Query 033409
Match_columns 120
No_of_seqs 100 out of 179
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 22:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 66.1 4 0.00029 19.3 3.1 18 72-89 5-22 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 45.8 13 0.00091 19.0 3.2 20 70-89 6-25 (37)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 29.4 30 0.0022 16.6 3.3 18 70-88 12-29 (32)
4 d2gmha2 d.16.1.8 (A:237-335) E 27.9 9.6 0.0007 23.4 1.1 15 96-110 63-77 (99)
5 d1dwka2 d.72.1.1 (A:87-156) Cy 23.9 14 0.001 21.5 1.1 21 97-117 8-28 (70)
6 d1wjza_ a.2.3.1 (A:) CSL-type 23.4 8.2 0.0006 23.1 0.1 12 98-109 16-27 (94)
7 d2iuba2 f.17.3.1 (A:286-349) M 22.9 19 0.0014 19.7 1.7 16 14-29 7-22 (64)
8 d1q90g_ f.23.26.1 (G:) PetG su 15.8 40 0.0029 16.0 1.7 17 15-31 5-21 (30)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 14.7 59 0.0043 14.9 2.1 8 74-81 2-9 (27)
10 d1xbla_ a.2.3.1 (A:) DnaJ chap 11.6 18 0.0013 20.4 -0.5 12 99-110 4-15 (75)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=66.09 E-value=4 Score=19.25 Aligned_cols=18 Identities=33% Similarity=0.932 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033409 72 LSLVLLWVIMIILIYYIK 89 (120)
Q Consensus 72 l~lv~GW~l~~~L~y~i~ 89 (120)
+.+-+.|+.++.|+|.+.
T Consensus 5 laiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 5 LAIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445568999999999876
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=45.83 E-value=13 Score=19.01 Aligned_cols=20 Identities=20% Similarity=0.713 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033409 70 SNLSLVLLWVIMIILIYYIK 89 (120)
Q Consensus 70 ~~l~lv~GW~l~~~L~y~i~ 89 (120)
.-+++-+-|+.++.|++.+.
T Consensus 6 Aql~ly~Fw~FFagLi~YL~ 25 (37)
T d1eysh2 6 AQITIWAFWLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567779999999998875
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=29.45 E-value=30 Score=16.63 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033409 70 SNLSLVLLWVIMIILIYYI 88 (120)
Q Consensus 70 ~~l~lv~GW~l~~~L~y~i 88 (120)
..-++.+||.+-+.| .+|
T Consensus 12 sfglifvgwglgall-lki 29 (32)
T d2e74f1 12 SFGLIFVGWGLGVLL-LKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHH-HHH
T ss_pred HhhHHHHHhHHHHHH-hhh
Confidence 455678899998777 444
No 4
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=27.85 E-value=9.6 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=12.4
Q ss_pred CccchhhHhHhhhhh
Q 033409 96 TRFGTWGLRFRYKES 110 (120)
Q Consensus 96 ~~fDPYeIL~~~~~~ 110 (120)
.-.+||+.|+++|.-
T Consensus 63 ~~~~p~~~lq~fK~H 77 (99)
T d2gmha2 63 PYLSPFREFQRWKHH 77 (99)
T ss_dssp TTCCHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhcC
Confidence 347999999999963
No 5
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.91 E-value=14 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=16.5
Q ss_pred ccchhhHhHhhhhhhhhhhhc
Q 033409 97 RFGTWGLRFRYKESISETFHT 117 (120)
Q Consensus 97 ~fDPYeIL~~~~~~~~~~~~~ 117 (120)
+|-=||++++|-+++.|..|.
T Consensus 8 iYR~yE~v~vYG~~~K~li~E 28 (70)
T d1dwka2 8 MYRFYEMLQVYGTTLKALVHE 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcHHHHHHHHH
Confidence 345599999999888877763
No 6
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.40 E-value=8.2 Score=23.05 Aligned_cols=12 Identities=0% Similarity=-0.291 Sum_probs=10.0
Q ss_pred cchhhHhHhhhh
Q 033409 98 FGTWGLRFRYKE 109 (120)
Q Consensus 98 fDPYeIL~~~~~ 109 (120)
=|+|+||++-..
T Consensus 16 ~d~Y~iLgv~~~ 27 (94)
T d1wjza_ 16 KDWYSILGADPS 27 (94)
T ss_dssp SCHHHHTTCCTT
T ss_pred cChHHHcCCCCC
Confidence 599999998654
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=22.88 E-value=19 Score=19.67 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhhhHH
Q 033409 14 FILTIMALPLVPYTIL 29 (120)
Q Consensus 14 FvLt~l~lvLIP~T~~ 29 (120)
-.||.++.+.+|+|..
T Consensus 7 k~lT~it~iflP~t~i 22 (64)
T d2iuba2 7 KVLTIIATIFMPLTFI 22 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3689999999999973
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=15.82 E-value=40 Score=16.03 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhhhHHhh
Q 033409 15 ILTIMALPLVPYTILKL 31 (120)
Q Consensus 15 vLt~l~lvLIP~T~~~l 31 (120)
+++-+.+=|||.|+.=+
T Consensus 5 ll~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHH
Confidence 35556677889887533
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.69 E-value=59 Score=14.87 Aligned_cols=8 Identities=50% Similarity=0.775 Sum_probs=4.9
Q ss_pred HHHHHHHH
Q 033409 74 LVLLWVIM 81 (120)
Q Consensus 74 lv~GW~l~ 81 (120)
+++||+.+
T Consensus 2 ~~lgwv~l 9 (27)
T d2e74h1 2 DVLGWVAL 9 (27)
T ss_dssp HHHHHHHH
T ss_pred cchhHhHH
Confidence 45677654
No 10
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=11.61 E-value=18 Score=20.38 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=9.2
Q ss_pred chhhHhHhhhhh
Q 033409 99 GTWGLRFRYKES 110 (120)
Q Consensus 99 DPYeIL~~~~~~ 110 (120)
|.|+||++-..+
T Consensus 4 dyY~vLgv~~~A 15 (75)
T d1xbla_ 4 DYYEILGVSKTA 15 (75)
T ss_dssp CTTTTTCCSSSC
T ss_pred CHHHHcCCCCCc
Confidence 889999886543
Done!