BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033411
MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE
AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHVHSFVCCFHVDG

High Scoring Gene Products

Symbol, full name Information P value
AT1G24310 protein from Arabidopsis thaliana 1.4e-39

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033411
        (120 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2032417 - symbol:AT1G24310 "AT1G24310" species...   422  1.4e-39   1


>TAIR|locus:2032417 [details] [associations]
            symbol:AT1G24310 "AT1G24310" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005635 "nuclear
            envelope" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
            process" evidence=RCA] InterPro:IPR024864 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005635 GO:GO:0005730
            UniGene:At.41446 UniGene:At.41449 InterPro:IPR025712
            PANTHER:PTHR13000 Pfam:PF13874 KO:K14308 EMBL:BT004977
            EMBL:AK117665 IPI:IPI00520945 RefSeq:NP_173841.1
            ProteinModelPortal:Q8GYF7 SMR:Q8GYF7 IntAct:Q8GYF7 STRING:Q8GYF7
            PRIDE:Q8GYF7 EnsemblPlants:AT1G24310.1 GeneID:839047
            KEGG:ath:AT1G24310 TAIR:At1g24310 HOGENOM:HOG000006392
            InParanoid:Q8GYF7 OMA:MDSADRE PhylomeDB:Q8GYF7
            ProtClustDB:CLSN2682392 ArrayExpress:Q8GYF7 Genevestigator:Q8GYF7
            Uniprot:Q8GYF7
        Length = 377

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 77/93 (82%), Positives = 88/93 (94%)

Query:     1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
             MAPVAP+ +SLA+RD+QAI++AYKE+PTNPKYAF+HLLFSVTEPQ+RVKP  VSDIMWAE
Sbjct:   114 MAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAE 173

Query:    61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
             AM KLEGMDST+RERLWPQLVQGFKDLS RLK+
Sbjct:   174 AMSKLEGMDSTERERLWPQLVQGFKDLSQRLKL 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       120   0.00091  102 3  11 22  0.44    30
                                                     29  0.48    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.15u 0.09s 13.24t   Elapsed:  00:00:01
  Total cpu time:  13.15u 0.09s 13.24t   Elapsed:  00:00:01
  Start:  Sat May 11 02:18:00 2013   End:  Sat May 11 02:18:01 2013

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