BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033411
(120 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225425478|ref|XP_002279552.1| PREDICTED: nuclear pore complex protein Nup54-like [Vitis vinifera]
Length = 371
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/93 (84%), Positives = 88/93 (94%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL FSLA+RD+QAIV+AY++EP NPKYAFKHLLFSVT+PQFRVKP G SDIMWAE
Sbjct: 107 MAPVAPLPFSLADRDVQAIVEAYRDEPGNPKYAFKHLLFSVTDPQFRVKPAGASDIMWAE 166
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S+DRERLWPQLVQGFKDLS RLK+
Sbjct: 167 AMGKLEGMESSDRERLWPQLVQGFKDLSQRLKL 199
>gi|297738423|emb|CBI27624.3| unnamed protein product [Vitis vinifera]
Length = 265
Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/93 (84%), Positives = 88/93 (94%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL FSLA+RD+QAIV+AY++EP NPKYAFKHLLFSVT+PQFRVKP G SDIMWAE
Sbjct: 1 MAPVAPLPFSLADRDVQAIVEAYRDEPGNPKYAFKHLLFSVTDPQFRVKPAGASDIMWAE 60
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S+DRERLWPQLVQGFKDLS RLK+
Sbjct: 61 AMGKLEGMESSDRERLWPQLVQGFKDLSQRLKL 93
>gi|255547750|ref|XP_002514932.1| conserved hypothetical protein [Ricinus communis]
gi|223545983|gb|EEF47486.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats.
Identities = 80/93 (86%), Positives = 87/93 (93%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL FSL +RDIQAIVDAYKE+P NPKYAFK+LLFSVT+PQ RVKP GVSDIMWAE
Sbjct: 131 MAPVAPLPFSLCDRDIQAIVDAYKEDPGNPKYAFKYLLFSVTDPQHRVKPAGVSDIMWAE 190
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGM+S+DRERLWPQLVQGFKDLSNRLK+
Sbjct: 191 AMAKLEGMESSDRERLWPQLVQGFKDLSNRLKL 223
>gi|356566511|ref|XP_003551474.1| PREDICTED: uncharacterized protein LOC100797030 [Glycine max]
Length = 391
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 80/93 (86%), Positives = 86/93 (92%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAP+ FSLA+RD+Q IVDAYKE+P NPKYAFKHLLFSVTEPQFRVKP GVSDIMWAE
Sbjct: 125 MANVAPVPFSLADRDVQTIVDAYKEDPGNPKYAFKHLLFSVTEPQFRVKPAGVSDIMWAE 184
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S DRERLWPQLVQGFKDLS RLK+
Sbjct: 185 AMGKLEGMESADRERLWPQLVQGFKDLSQRLKI 217
>gi|224107623|ref|XP_002314540.1| predicted protein [Populus trichocarpa]
gi|222863580|gb|EEF00711.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 172 bits (435), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/93 (87%), Positives = 86/93 (92%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL FSLA+RDIQAIVDAYKEEP NPKYAFK+LL SVT+PQ RVKP GVS+IMWAE
Sbjct: 13 MAPVAPLPFSLADRDIQAIVDAYKEEPGNPKYAFKYLLLSVTDPQHRVKPAGVSEIMWAE 72
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGMDS DRERLWPQLVQGFKDLSNRLK+
Sbjct: 73 AMAKLEGMDSADRERLWPQLVQGFKDLSNRLKL 105
>gi|15221725|ref|NP_173841.1| uncharacterized protein [Arabidopsis thaliana]
gi|26450407|dbj|BAC42318.1| unknown protein [Arabidopsis thaliana]
gi|28827332|gb|AAO50510.1| unknown protein [Arabidopsis thaliana]
gi|332192394|gb|AEE30515.1| uncharacterized protein [Arabidopsis thaliana]
Length = 377
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/93 (82%), Positives = 88/93 (94%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ +SLA+RD+QAI++AYKE+PTNPKYAF+HLLFSVTEPQ+RVKP VSDIMWAE
Sbjct: 114 MAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAE 173
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGMDST+RERLWPQLVQGFKDLS RLK+
Sbjct: 174 AMSKLEGMDSTERERLWPQLVQGFKDLSQRLKL 206
>gi|297808793|ref|XP_002872280.1| hypothetical protein ARALYDRAFT_910872 [Arabidopsis lyrata subsp.
lyrata]
gi|297318117|gb|EFH48539.1| hypothetical protein ARALYDRAFT_910872 [Arabidopsis lyrata subsp.
lyrata]
Length = 263
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 88/93 (94%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ +SLA+RD+QAI++AYKE+PTNPKYAF+HLLFSVTEPQ+RVKP VSDIMWAE
Sbjct: 109 MAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAE 168
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGMDST+RERLWPQLVQGFKDLS RLK+
Sbjct: 169 AMSKLEGMDSTERERLWPQLVQGFKDLSQRLKL 201
>gi|2829886|gb|AAC00594.1| Hypothetical protein [Arabidopsis thaliana]
Length = 288
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 88/93 (94%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ +SLA+RD+QAI++AYKE+PTNPKYAF+HLLFSVTEPQ+RVKP VSDIMWAE
Sbjct: 114 MAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAE 173
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGMDST+RERLWPQLVQGFKDLS RLK+
Sbjct: 174 AMSKLEGMDSTERERLWPQLVQGFKDLSQRLKL 206
>gi|449435057|ref|XP_004135312.1| PREDICTED: uncharacterized protein LOC101211067 [Cucumis sativus]
gi|449494920|ref|XP_004159683.1| PREDICTED: uncharacterized LOC101211067 [Cucumis sativus]
Length = 389
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/93 (83%), Positives = 86/93 (92%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL FSLA+RDIQAIV+AYK++ NPKYAFKHLLFSVT+PQ+R KPPGVSDIMWAE
Sbjct: 125 MAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDIMWAE 184
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGM+S DRERLWPQLVQGFKDLS RLK+
Sbjct: 185 AMAKLEGMESADRERLWPQLVQGFKDLSQRLKI 217
>gi|297851152|ref|XP_002893457.1| hypothetical protein ARALYDRAFT_472914 [Arabidopsis lyrata subsp.
lyrata]
gi|297339299|gb|EFH69716.1| hypothetical protein ARALYDRAFT_472914 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/93 (81%), Positives = 86/93 (92%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ +SLA+RD+Q I++AYKE PTNPKYAF+HLLFSVTEPQ+RVKP VSDIMWAE
Sbjct: 113 MAPVAPIPYSLADRDVQVIIEAYKEGPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAE 172
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGMDST+RERLWPQLVQGFKDLS RLK+
Sbjct: 173 AMSKLEGMDSTERERLWPQLVQGFKDLSQRLKL 205
>gi|356538091|ref|XP_003537538.1| PREDICTED: nuclear pore complex protein Nup54-like [Glycine max]
Length = 349
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 86/93 (92%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAP+ FSLA+RD+Q IVDAYK++P NPKYAFKHLLFSVTEPQFRVKP GVSDIMWAE
Sbjct: 90 MANVAPVPFSLADRDVQTIVDAYKDDPGNPKYAFKHLLFSVTEPQFRVKPAGVSDIMWAE 149
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
A+GKL+GM+S DRERLWPQLVQGFKDLS RLK+
Sbjct: 150 AIGKLQGMESPDRERLWPQLVQGFKDLSQRLKI 182
>gi|357463049|ref|XP_003601806.1| Nuclear pore complex protein Nup54 [Medicago truncatula]
gi|355490854|gb|AES72057.1| Nuclear pore complex protein Nup54 [Medicago truncatula]
Length = 385
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 77/93 (82%), Positives = 85/93 (91%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAP+ FSLA+RDIQAI+D+YKE+ NPKYAFKHLLFSVT+PQFRVKP GVSDIMWAE
Sbjct: 114 MANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAE 173
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S DRERLWPQ VQGFKDLS RLK+
Sbjct: 174 AMGKLEGMESADRERLWPQQVQGFKDLSQRLKL 206
>gi|388515847|gb|AFK45985.1| unknown [Medicago truncatula]
Length = 396
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 77/93 (82%), Positives = 85/93 (91%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAP+ FSLA+RDIQAI+D+YKE+ NPKYAFKHLLFSVT+PQFRVKP GVSDIMWAE
Sbjct: 114 MANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAE 173
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S DRERLWPQ VQGFKDLS RLK+
Sbjct: 174 AMGKLEGMESADRERLWPQQVQGFKDLSQRLKL 206
>gi|217074002|gb|ACJ85361.1| unknown [Medicago truncatula]
Length = 384
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 77/93 (82%), Positives = 85/93 (91%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAP+ FSLA+RDIQAI+D+YKE+ NPKYAFKHLLFSVT+PQFRVKP GVSDIMWAE
Sbjct: 114 MANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAE 173
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGM+S DRERLWPQ VQGFKDLS RLK+
Sbjct: 174 AMGKLEGMESADRERLWPQQVQGFKDLSQRLKL 206
>gi|125599898|gb|EAZ39474.1| hypothetical protein OsJ_23902 [Oryza sativa Japonica Group]
Length = 231
Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 83/93 (89%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 130 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 189
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGMDS+DRERLWPQLVQGFKDLS RLKV
Sbjct: 190 AMGKLEGMDSSDRERLWPQLVQGFKDLSYRLKV 222
>gi|226500566|ref|NP_001143741.1| uncharacterized protein LOC100276495 [Zea mays]
gi|195626058|gb|ACG34859.1| hypothetical protein [Zea mays]
Length = 445
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/93 (80%), Positives = 82/93 (88%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 174 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 233
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS+RLK+
Sbjct: 234 AMGKLECMDSADRERLWPQLVQGFKDLSHRLKL 266
>gi|242043710|ref|XP_002459726.1| hypothetical protein SORBIDRAFT_02g009450 [Sorghum bicolor]
gi|241923103|gb|EER96247.1| hypothetical protein SORBIDRAFT_02g009450 [Sorghum bicolor]
Length = 437
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/93 (80%), Positives = 82/93 (88%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 166 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 225
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS+RLK+
Sbjct: 226 AMGKLECMDSADRERLWPQLVQGFKDLSHRLKL 258
>gi|224030731|gb|ACN34441.1| unknown [Zea mays]
gi|414884275|tpg|DAA60289.1| TPA: hypothetical protein ZEAMMB73_266834 [Zea mays]
Length = 445
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/93 (80%), Positives = 82/93 (88%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 174 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 233
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS+RLK+
Sbjct: 234 AMGKLECMDSADRERLWPQLVQGFKDLSHRLKL 266
>gi|218199458|gb|EEC81885.1| hypothetical protein OsI_25696 [Oryza sativa Indica Group]
Length = 381
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 76/93 (81%), Positives = 83/93 (89%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 139 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 198
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGMDS+DRERLWPQLVQGFKDLS RLK+
Sbjct: 199 AMGKLEGMDSSDRERLWPQLVQGFKDLSYRLKL 231
>gi|115471617|ref|NP_001059407.1| Os07g0295400 [Oryza sativa Japonica Group]
gi|34394986|dbj|BAC84534.1| unknown protein [Oryza sativa Japonica Group]
gi|50509044|dbj|BAD32058.1| unknown protein [Oryza sativa Japonica Group]
gi|113610943|dbj|BAF21321.1| Os07g0295400 [Oryza sativa Japonica Group]
gi|215765801|dbj|BAG87498.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 403
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/93 (81%), Positives = 83/93 (89%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVKP SDIMWAE
Sbjct: 130 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVKPVAASDIMWAE 189
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLEGMDS+DRERLWPQLVQGFKDLS RLK+
Sbjct: 190 AMGKLEGMDSSDRERLWPQLVQGFKDLSYRLKL 222
>gi|357111000|ref|XP_003557303.1| PREDICTED: uncharacterized protein LOC100830854 [Brachypodium
distachyon]
Length = 401
Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 81/93 (87%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVT+P RVKP SDIMWAE
Sbjct: 130 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTDPSQRVKPVAASDIMWAE 189
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS RLK+
Sbjct: 190 AMGKLECMDSADRERLWPQLVQGFKDLSGRLKL 222
>gi|326534188|dbj|BAJ89444.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 81/93 (87%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQA+VDAYKEEP NP+YAF+HLLFSVT+P RVKP SDIMWAE
Sbjct: 120 MAPVAPLPLSPSDRDIQAMVDAYKEEPGNPRYAFRHLLFSVTDPSQRVKPVAASDIMWAE 179
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS RLK+
Sbjct: 180 AMGKLECMDSADRERLWPQLVQGFKDLSCRLKL 212
>gi|326500610|dbj|BAJ94971.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 397
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 81/93 (87%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAPL S ++RDIQA+VDAYKEEP NP+YAF+HLLFSVT+P RVKP SDIMWAE
Sbjct: 126 MAPVAPLPLSPSDRDIQAMVDAYKEEPGNPRYAFRHLLFSVTDPSQRVKPVAASDIMWAE 185
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AMGKLE MDS DRERLWPQLVQGFKDLS RLK+
Sbjct: 186 AMGKLECMDSADRERLWPQLVQGFKDLSCRLKL 218
>gi|148910192|gb|ABR18177.1| unknown [Picea sitchensis]
Length = 446
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/93 (75%), Positives = 77/93 (82%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ L +RDIQAIVDAYK E NPKY FKH L SVT+P R+KP GVSDIMWAE
Sbjct: 160 MAPVAPVVTPLPDRDIQAIVDAYKSEAGNPKYGFKHFLLSVTDPSTRIKPVGVSDIMWAE 219
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEGM+S DRERLWP+LVQGFKDLS RLK+
Sbjct: 220 AMNKLEGMESADRERLWPELVQGFKDLSRRLKL 252
>gi|224100027|ref|XP_002311716.1| predicted protein [Populus trichocarpa]
gi|222851536|gb|EEE89083.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 72/93 (77%), Positives = 82/93 (88%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MA VAPL FSLA+RDIQAIVDAYKE+P N KYAFK+LL SVT+P+ R K GVSDIMWAE
Sbjct: 108 MALVAPLPFSLADRDIQAIVDAYKEDPGNLKYAFKYLLLSVTDPRHRGKLAGVSDIMWAE 167
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
+M KLEGM+ TDRERLWPQLV+GFKDLS+RLK+
Sbjct: 168 SMAKLEGMEGTDRERLWPQLVRGFKDLSHRLKL 200
>gi|168012954|ref|XP_001759166.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689479|gb|EDQ75850.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 486
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/93 (65%), Positives = 77/93 (82%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAE 60
MAPVAP+ +L +R+IQAIVDAY+++ NP+ FK+LL S+T+P R KP GVSDI+WAE
Sbjct: 199 MAPVAPVVATLPDREIQAIVDAYRDDIGNPQKGFKYLLLSITDPAARFKPVGVSDILWAE 258
Query: 61 AMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
AM KLEG+DS DRERLWP+LV GFKDLS R+K+
Sbjct: 259 AMNKLEGLDSMDRERLWPELVHGFKDLSRRMKL 291
>gi|168039195|ref|XP_001772084.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676685|gb|EDQ63165.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 423
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/81 (67%), Positives = 68/81 (83%)
Query: 13 ERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTD 72
+R+IQAIVDAY+++ NP+ FK+LL SVT+P R KP GVSDI+WAEAM KLEG+DS D
Sbjct: 148 DREIQAIVDAYRDDVGNPQDCFKYLLLSVTDPAARFKPAGVSDILWAEAMNKLEGLDSMD 207
Query: 73 RERLWPQLVQGFKDLSNRLKV 93
RERLWP+LV GFKDLS R+K+
Sbjct: 208 RERLWPELVHGFKDLSRRMKL 228
>gi|414884276|tpg|DAA60290.1| TPA: hypothetical protein ZEAMMB73_266834 [Zea mays]
Length = 271
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 43/49 (87%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVK 49
MAPVAPL S ++RDIQAIVDAYKE+P NP+YAF+HLLFSVTEP RVK
Sbjct: 174 MAPVAPLPLSPSDRDIQAIVDAYKEDPGNPRYAFRHLLFSVTEPSQRVK 222
>gi|307104027|gb|EFN52283.1| hypothetical protein CHLNCDRAFT_139025 [Chlorella variabilis]
Length = 433
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 12 AERDIQAIVDAYKEEPTNPKYAFKHLLFSVTE-PQFRVKPPGVSDIMWAEAMGKLEGMDS 70
A R++++I D+Y NP+Y F+HLL +V + P RVKP GV ++ W EA+ + G D+
Sbjct: 177 AIRELESIKDSYVAGAGNPRYRFQHLLLNVVDNPAARVKPAGVDELAWREALQRAGGADN 236
Query: 71 TDRERLWPQLVQGFKDLSNR 90
E LWP L GFKDL R
Sbjct: 237 P--EHLWPVLAHGFKDLLAR 254
>gi|255083759|ref|XP_002508454.1| predicted protein [Micromonas sp. RCC299]
gi|226523731|gb|ACO69712.1| predicted protein [Micromonas sp. RCC299]
Length = 585
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 13 ERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTD 72
ER++ AI AY +P NP + F+H +VTEP RV+PPGV ++ W + + G +
Sbjct: 256 ERELMAIAKAYNADPNNPDFRFRHFFHNVTEPHHRVRPPGVDELKWRNLLEDVGG--EHN 313
Query: 73 RERLWPQLVQGFKDLSNRLKV 93
LWP GFK L+ R V
Sbjct: 314 AAGLWPVPGDGFKCLAERAAV 334
>gi|384252943|gb|EIE26418.1| hypothetical protein COCSUDRAFT_39521 [Coccomyxa subellipsoidea
C-169]
Length = 451
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 1 MAPVA-----PLQFSLAE-RDIQAIVDAYKEEPTNPKYAFKHLLFSVTE-PQFRVKPPGV 53
MAP P Q LA ++++AI +AY P N +Y F HL +V + P KPPGV
Sbjct: 167 MAPATFASGLPPQPDLAAIKELEAIREAYTAAPGNTRYRFHHLFLNVVDNPAACQKPPGV 226
Query: 54 SDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNR 90
++ W EAM + G + + LWP L G KDL R
Sbjct: 227 DELRWREAMQRAGG--PGNAQHLWPVLAHGTKDLLAR 261
>gi|225467138|ref|XP_002262993.1| PREDICTED: uncharacterized protein LOC100256584 [Vitis vinifera]
Length = 257
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVT-EPQFRVKPPGVSDIMWA 59
MA VAPL SLA+ I+ IV+ YK+EP NPKYAFKH LFS +P+F GVS ++
Sbjct: 10 MASVAPLPLSLADHGIKTIVEVYKDEPRNPKYAFKHFLFSAQGQPRF-----GVSLCLFV 64
Query: 60 EAMGKL 65
+ + L
Sbjct: 65 DCLNTL 70
>gi|145341740|ref|XP_001415961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576184|gb|ABO94253.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 766
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 14 RDIQAIVDAYKEEPTNPKYAFKHLLFSVT-EPQFRVKPPGVSDIMWAEAMGKLEGMDSTD 72
R++Q IV+AY P +P Y F+ ++V +P+ RVKP VS+ W E + + G ++ D
Sbjct: 486 REVQEIVNAYN--PNHPDYRFRAYFYNVVKDPRMRVKPQNVSERKWRELLDAVGGENNPD 543
Query: 73 RERLWPQLVQGFKDLSNR 90
LWP GF+ L R
Sbjct: 544 --CLWPVQYDGFEGLIQR 559
>gi|302848538|ref|XP_002955801.1| hypothetical protein VOLCADRAFT_119185 [Volvox carteri f.
nagariensis]
gi|300258994|gb|EFJ43226.1| hypothetical protein VOLCADRAFT_119185 [Volvox carteri f.
nagariensis]
Length = 1149
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 12 AERDIQAIVDAYKEEPTNPKYAFKHLLFSVTE-PQFRVKPPG-VSDIMWAEAMGKLEGMD 69
A R + + AY P +P + F+ L SV E + RVKPPG V + W A+ ++G +
Sbjct: 891 AVRALTRLAAAYN--PGSPDFRFQTLFVSVVERAEQRVKPPGYVDENRWRAALAAIKGPN 948
Query: 70 STDRERLWPQLVQGFKDLSNRLKV 93
+ ++LWP + GF DL+ R ++
Sbjct: 949 NP--QKLWPVVANGFADLNTRSRM 970
>gi|159471574|ref|XP_001693931.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277098|gb|EDP02867.1| predicted protein [Chlamydomonas reinhardtii]
Length = 450
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 12 AERDIQAIVDAYKEEPTNPKYAFKHLLFSVTE-PQFRVKPPG-VSDIMWAEAMGKLEGMD 69
A R + + AY P++ Y F+ L SV E P+ RVKP G V + W A+ ++G D
Sbjct: 154 AVRALTRLAAAYT--PSSADYRFQTLFASVVERPEQRVKPAGHVDENRWRAALAAVKGPD 211
Query: 70 STDRERLWPQLVQGFKDLSNRLKV 93
+ ++LWP GF+DL+ R ++
Sbjct: 212 NP--QKLWPVAANGFRDLNTRSRM 233
>gi|147783075|emb|CAN66375.1| hypothetical protein VITISV_037549 [Vitis vinifera]
Length = 1347
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 16 IQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDI 56
+ AIV+ YK+EP N K FK+ FS+T+PQFR++ V DI
Sbjct: 1004 LSAIVEVYKDEPGNLKLVFKYSSFSITDPQFRIQSVDVVDI 1044
>gi|308799563|ref|XP_003074562.1| Nuclear pore complex, p54 component (sc Nup57) (ISS)
[Ostreococcus tauri]
gi|116000733|emb|CAL50413.1| Nuclear pore complex, p54 component (sc Nup57) (ISS)
[Ostreococcus tauri]
Length = 273
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 16 IQAIVDAYKEEPTNPKYAFKHLLFSV-TEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRE 74
+Q I++AY P +P Y F+ ++V +P+ RVKP VS+ W E + + G ++ D
Sbjct: 1 MQEIINAYN--PNHPDYKFRTYFYNVVKDPRMRVKPQNVSERKWRELLDAVGGENNPD-- 56
Query: 75 RLWPQLVQGFKDLSNR 90
LWP GF+ L R
Sbjct: 57 CLWPVQYDGFEGLMRR 72
>gi|412992198|emb|CCO19911.1| predicted protein [Bathycoccus prasinos]
Length = 718
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 14 RDIQAIVDAYKEEPTNPKYAFKHLLFSVTE-PQFRVKPPGVSDIMWAEAMGKLEGMDSTD 72
+++ +++AY P +P+Y FK +++ + P+ +VK + + W E + K+ G ++ +
Sbjct: 347 KELHDVMNAYN--PQHPEYRFKAFFYNIAQDPRQKVKIQNIDERTWHELLDKVGGEENEN 404
Query: 73 RERLWPQLVQGFKDLSNR 90
LWP V GF L R
Sbjct: 405 --GLWPCRVDGFDGLYQR 420
>gi|296090486|emb|CBI40817.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 23 YKEEPTNPKYAFKHLLFSVT-EPQFRVKPPGVSDIMWAEAMGKL 65
YK+EP NPKYAFKH LFS +P+F GVS ++ + + L
Sbjct: 56 YKDEPRNPKYAFKHFLFSAQGQPRF-----GVSLCLFVDCLNTL 94
>gi|384485845|gb|EIE78025.1| hypothetical protein RO3G_02729 [Rhizopus delemar RA 99-880]
Length = 417
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 26 EPTNPKYAFKHLLFSVT---EPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQ 82
+PT+P F+H +++ E V+PP + +W EA+ K + D L P L
Sbjct: 189 DPTSPLCHFRHYFYNMVPRNEVHLYVRPPNQDEHLWNEAVRK-----NPDPSCLVPVLAV 243
Query: 83 GFKDLSNRLKV 93
GF D+ R++V
Sbjct: 244 GFDDILKRMEV 254
>gi|8393855|ref|NP_059057.1| nuclear pore complex protein Nup54 [Rattus norvegicus]
gi|38257803|sp|P70582.1|NUP54_RAT RecName: Full=Nuclear pore complex protein Nup54; AltName: Full=54
kDa nucleoporin; AltName: Full=Nucleoporin Nup54
gi|1537070|gb|AAC52790.1| nucleoporin p54 [Rattus norvegicus]
gi|50927635|gb|AAH78858.1| Nucleoporin 54 [Rattus norvegicus]
gi|149033843|gb|EDL88639.1| nucleoporin 54 [Rattus norvegicus]
Length = 510
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|345795620|ref|XP_544935.3| PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein Nup54
isoform 1 [Canis lupus familiaris]
Length = 562
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 356 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 394
>gi|301778721|ref|XP_002924778.1| PREDICTED: nucleoporin p54-like isoform 1 [Ailuropoda melanoleuca]
Length = 562
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 356 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 394
>gi|39930543|ref|NP_899248.1| nuclear pore complex protein Nup54 [Mus musculus]
gi|38258076|sp|Q8BTS4.1|NUP54_MOUSE RecName: Full=Nuclear pore complex protein Nup54; AltName: Full=54
kDa nucleoporin; AltName: Full=Nucleoporin Nup54
gi|26353970|dbj|BAC40615.1| unnamed protein product [Mus musculus]
gi|56080064|gb|AAH68114.1| Nucleoporin 54 [Mus musculus]
gi|74187459|dbj|BAE36693.1| unnamed protein product [Mus musculus]
gi|74228777|dbj|BAE21878.1| unnamed protein product [Mus musculus]
gi|148673302|gb|EDL05249.1| mCG15625 [Mus musculus]
Length = 510
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|426231900|ref|XP_004009975.1| PREDICTED: nuclear pore complex protein Nup54-like [Ovis aries]
Length = 510
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|109074424|ref|XP_001097440.1| PREDICTED: nucleoporin p54 isoform 3 [Macaca mulatta]
Length = 562
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 356 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 394
>gi|410957410|ref|XP_003985320.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 2 [Felis
catus]
Length = 459
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|440903291|gb|ELR53973.1| Nuclear pore complex protein Nup54 [Bos grunniens mutus]
Length = 508
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|115497096|ref|NP_001068753.1| nucleoporin 54kDa [Bos taurus]
gi|89994059|gb|AAI14016.1| Nucleoporin 54kDa [Bos taurus]
Length = 510
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|26352776|dbj|BAC40018.1| unnamed protein product [Mus musculus]
Length = 364
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|410957408|ref|XP_003985319.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 1 [Felis
catus]
Length = 508
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|354501441|ref|XP_003512800.1| PREDICTED: nuclear pore complex protein Nup54-like [Cricetulus
griseus]
Length = 509
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 303 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 341
>gi|444730096|gb|ELW70492.1| Nuclear pore complex protein Nup54 [Tupaia chinensis]
Length = 419
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L +RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDAEKLIPVPMVGFKELLHRLKV 291
>gi|350587673|ref|XP_003129166.3| PREDICTED: nuclear pore complex protein Nup54 isoform 1 [Sus
scrofa]
Length = 510
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|296486425|tpg|DAA28538.1| TPA: nucleoporin 54kDa [Bos taurus]
Length = 480
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342
>gi|391335082|ref|XP_003741926.1| PREDICTED: nuclear pore complex protein Nup54-like [Metaseiulus
occidentalis]
Length = 668
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVY 97
PPG+ ++W +A D+ D +L P + GF+DLS R+K Y
Sbjct: 474 PPGIDALLWEQAKA-----DNPDPSKLIPVPLIGFEDLSRRMKFQCDY 516
>gi|344284877|ref|XP_003414191.1| PREDICTED: nuclear pore complex protein Nup54-like [Loxodonta
africana]
Length = 508
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|332233263|ref|XP_003265823.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 2
[Nomascus leucogenys]
Length = 459
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|281339371|gb|EFB14955.1| hypothetical protein PANDA_014184 [Ailuropoda melanoleuca]
Length = 408
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 202 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 240
>gi|194209049|ref|XP_001916035.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein
Nup54-like [Equus caballus]
Length = 507
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|395542002|ref|XP_003772924.1| PREDICTED: nuclear pore complex protein Nup54-like [Sarcophilus
harrisii]
Length = 637
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 431 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 469
>gi|443682434|gb|ELT87031.1| hypothetical protein CAPTEDRAFT_154507 [Capitella teleta]
Length = 390
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P G+ ++W +A +D+ D E+L P + GF DL+NRL++
Sbjct: 192 PTGIDPLIWQQAK-----LDNPDPEKLIPVPMTGFSDLNNRLQL 230
>gi|114594151|ref|XP_001150700.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Pan
troglodytes]
gi|397524738|ref|XP_003832341.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Pan
paniscus]
gi|426344710|ref|XP_004038903.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Gorilla
gorilla gorilla]
gi|194390170|dbj|BAG61847.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|109074428|ref|XP_001096676.1| PREDICTED: nucleoporin p54 isoform 1 [Macaca mulatta]
Length = 459
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|297673803|ref|XP_002814941.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 2 [Pongo
abelii]
Length = 459
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|395834238|ref|XP_003790116.1| PREDICTED: nuclear pore complex protein Nup54-like [Otolemur
garnettii]
Length = 508
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|358011008|ref|ZP_09142818.1| putative signal peptide-containing protein [Acinetobacter sp.
P8-3-8]
Length = 271
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 4 VAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAEAMG 63
VAPL + A I ++ AY E+ N +YA K F++T+P S+I E +
Sbjct: 26 VAPLSYLTANTQI-PVISAYAEQALNAEYALKQPSFTITQPDNT-----KSEIQTTEHLK 79
Query: 64 KLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFW 104
D P G +S ++ P+ Y +H W
Sbjct: 80 SATVFD-------LPLKDSGTYQISTQISYPLKYVQHNKEW 113
>gi|301778723|ref|XP_002924779.1| PREDICTED: nucleoporin p54-like isoform 2 [Ailuropoda melanoleuca]
Length = 508
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|62898265|dbj|BAD97072.1| nucleoporin 54kDa variant [Homo sapiens]
Length = 507
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|350587675|ref|XP_003482464.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Sus
scrofa]
Length = 459
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|119626180|gb|EAX05775.1| nucleoporin 54kDa, isoform CRA_a [Homo sapiens]
Length = 470
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|26051237|ref|NP_059122.2| nucleoporin p54 [Homo sapiens]
gi|38257923|sp|Q7Z3B4.2|NUP54_HUMAN RecName: Full=Nucleoporin p54; AltName: Full=54 kDa nucleoporin
gi|119626182|gb|EAX05777.1| nucleoporin 54kDa, isoform CRA_c [Homo sapiens]
gi|162317728|gb|AAI56686.1| Nucleoporin 54kDa [synthetic construct]
gi|189054782|dbj|BAG37604.1| unnamed protein product [Homo sapiens]
gi|261858894|dbj|BAI45969.1| nucleoporin 54kDa [synthetic construct]
Length = 507
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|332233261|ref|XP_003265822.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 1
[Nomascus leucogenys]
Length = 508
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|296196263|ref|XP_002745740.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Callithrix
jacchus]
gi|403281113|ref|XP_003932043.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 459
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 253 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 291
>gi|114594147|ref|XP_517215.2| PREDICTED: nuclear pore complex protein Nup54 isoform 6 [Pan
troglodytes]
gi|397524736|ref|XP_003832340.1| PREDICTED: nuclear pore complex protein Nup54 isoform 1 [Pan
paniscus]
gi|426344708|ref|XP_004038902.1| PREDICTED: nuclear pore complex protein Nup54 isoform 1 [Gorilla
gorilla gorilla]
gi|62897063|dbj|BAD96472.1| nucleoporin 54kDa variant [Homo sapiens]
gi|67970089|dbj|BAE01389.1| unnamed protein product [Macaca fascicularis]
gi|355687325|gb|EHH25909.1| hypothetical protein EGK_15770 [Macaca mulatta]
gi|355749303|gb|EHH53702.1| hypothetical protein EGM_14391 [Macaca fascicularis]
gi|380813808|gb|AFE78778.1| nucleoporin p54 [Macaca mulatta]
gi|383419235|gb|AFH32831.1| nucleoporin p54 [Macaca mulatta]
gi|384947722|gb|AFI37466.1| nucleoporin p54 [Macaca mulatta]
gi|410213890|gb|JAA04164.1| nucleoporin 54kDa [Pan troglodytes]
gi|410250058|gb|JAA12996.1| nucleoporin 54kDa [Pan troglodytes]
gi|410298816|gb|JAA28008.1| nucleoporin 54kDa [Pan troglodytes]
gi|410329189|gb|JAA33541.1| nucleoporin 54kDa [Pan troglodytes]
Length = 508
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|395735055|ref|XP_002814940.2| PREDICTED: nuclear pore complex protein Nup54-like isoform 1 [Pongo
abelii]
Length = 508
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|403281111|ref|XP_003932042.1| PREDICTED: nuclear pore complex protein Nup54 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 508
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 340
>gi|402869488|ref|XP_003898789.1| PREDICTED: nucleoporin p54 [Papio anubis]
Length = 418
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 212 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 250
>gi|390460728|ref|XP_002745739.2| PREDICTED: nuclear pore complex protein Nup54 isoform 1 [Callithrix
jacchus]
Length = 509
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 303 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 341
>gi|7022821|dbj|BAA91735.1| unnamed protein product [Homo sapiens]
Length = 484
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|355708429|gb|AES03265.1| nucleoporin 54kDa [Mustela putorius furo]
Length = 400
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 281 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 319
>gi|123998605|gb|ABM86904.1| nucleoporin 54kDa [synthetic construct]
gi|157929122|gb|ABW03846.1| nucleoporin 54kDa [synthetic construct]
Length = 493
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339
>gi|126330706|ref|XP_001365916.1| PREDICTED: nuclear pore complex protein Nup54 isoform 1
[Monodelphis domestica]
Length = 504
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 298 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 336
>gi|126330708|ref|XP_001365973.1| PREDICTED: nuclear pore complex protein Nup54 isoform 2
[Monodelphis domestica]
Length = 508
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 302 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 340
>gi|345325699|ref|XP_001509878.2| PREDICTED: nuclear pore complex protein Nup54-like, partial
[Ornithorhynchus anatinus]
Length = 482
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 282 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 320
>gi|432115965|gb|ELK37105.1| Nuclear pore complex protein Nup54 [Myotis davidii]
Length = 643
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 437 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 475
>gi|327274218|ref|XP_003221875.1| PREDICTED: nuclear pore complex protein Nup54-like [Anolis
carolinensis]
Length = 502
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 296 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 334
>gi|432885842|ref|XP_004074783.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 3
[Oryzias latipes]
Length = 540
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L+P + GFK+L RL++
Sbjct: 334 PAGVDPIIWEQAK-----VDNPDPEKLFPVPMVGFKELLRRLQI 372
>gi|432885840|ref|XP_004074782.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 2
[Oryzias latipes]
Length = 579
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L+P + GFK+L RL++
Sbjct: 373 PAGVDPIIWEQAK-----VDNPDPEKLFPVPMVGFKELLRRLQI 411
>gi|432885833|ref|XP_004074781.1| PREDICTED: nuclear pore complex protein Nup54-like isoform 1
[Oryzias latipes]
Length = 532
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L+P + GFK+L RL++
Sbjct: 326 PAGVDPIIWEQAK-----VDNPDPEKLFPVPMVGFKELLRRLQI 364
>gi|417402071|gb|JAA47894.1| Putative nuclear pore complex p54 component sc nup57 [Desmodus
rotundus]
Length = 509
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 303 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 341
>gi|387017430|gb|AFJ50833.1| Nuclear pore complex protein Nup54-like [Crotalus adamanteus]
Length = 496
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 50 PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
P GV I+W +A +D+ D E+L P + GFK+L RLKV
Sbjct: 290 PAGVDPIIWEQAK-----VDNPDPEKLIPVPMVGFKELLRRLKV 328
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,047,650,193
Number of Sequences: 23463169
Number of extensions: 79834622
Number of successful extensions: 206134
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 206096
Number of HSP's gapped (non-prelim): 101
length of query: 120
length of database: 8,064,228,071
effective HSP length: 87
effective length of query: 33
effective length of database: 6,022,932,368
effective search space: 198756768144
effective search space used: 198756768144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)