BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033411
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 38 LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
L+ + +PQ K PGV A+A+ ++ D+ + +WP +++QG+ + +
Sbjct: 262 LWRLIDPQG--KAPGVMGWWPAKAVTFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 319
Query: 94 PVVYFRHVAFW 104
P +++ H W
Sbjct: 320 PCIFYDHFFNW 330
>pdb|3FD5|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD5|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Ampcp
pdb|3FD6|A Chain A, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
pdb|3FD6|B Chain B, Crystal Structure Of Human Selenophosphate Synthetase 1
Complex With Adp And Phosphate
Length = 394
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 62 MGKLEGMDSTDRERLWPQLVQGFKD 86
+G M +R+++ P ++QGFKD
Sbjct: 128 LGVSNKMTDRERDKVMPLIIQGFKD 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,877,732
Number of Sequences: 62578
Number of extensions: 153376
Number of successful extensions: 409
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 11
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)