BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033411
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P70582|NUP54_RAT Nuclear pore complex protein Nup54 OS=Rattus norvegicus GN=Nup54
           PE=1 SV=1
          Length = 510

 Score = 36.2 bits (82), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 50  PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
           P GV  I+W +A      +D+ D E+L P  + GFK+L  RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342


>sp|Q8BTS4|NUP54_MOUSE Nuclear pore complex protein Nup54 OS=Mus musculus GN=Nup54 PE=1
           SV=1
          Length = 510

 Score = 36.2 bits (82), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 50  PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
           P GV  I+W +A      +D+ D E+L P  + GFK+L  RLKV
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 342


>sp|Q7Z3B4|NUP54_HUMAN Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2
          Length = 507

 Score = 35.8 bits (81), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 50  PPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKV 93
           P GV  I+W +A      +D+ D E+L P  + GFK+L  RLKV
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKV 339


>sp|P08117|AMY3_WHEAT Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1
          Length = 413

 Score = 33.1 bits (74), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 49  KPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKVPVVYFRHVAFW 104
           K PG+   M  + +  ++  D+   +RLWP    +++QG+  +     +P +++ HV  W
Sbjct: 276 KAPGMIGWMPEKTVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDW 335


>sp|P17859|AMYA_VIGMU Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1
          Length = 421

 Score = 33.1 bits (74), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 49  KPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKVPVVYFRHVAFW 104
           KPPG+  +    A+  ++  D+   +RLWP    +++QG+  +      P +++ H   W
Sbjct: 289 KPPGMIGVKPENAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDW 348


>sp|P00693|AMY1_HORVU Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1
          Length = 438

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 38  LFSVTEPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKV 93
           L+ + +PQ   K PGV     A+A   ++  D+   + +WP    +++QG+  +     +
Sbjct: 286 LWRLIDPQG--KAPGVMGWWPAKAATFVDNHDTGSTQAMWPFPSDKVMQGYAYILTHPGI 343

Query: 94  PVVYFRHVAFW 104
           P +++ H   W
Sbjct: 344 PCIFYDHFFNW 354


>sp|P27934|AMY3E_ORYSJ Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4
           PE=2 SV=1
          Length = 437

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 49  KPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKVPVVYFRHVAFW 104
           K PG+   M  +A+  ++  D+   + LWP    +++QG+  +     +P +++ HV  W
Sbjct: 292 KAPGLMGWMPDQAVTFVDNHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDW 351


>sp|Q8LFG1|AMY2_ARATH Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1
          Length = 413

 Score = 29.3 bits (64), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 49  KPPGVSDIMWAEAMGKLEGMDSTDRERLWP----QLVQGFKDLSNRLKVPVVYFRHVAFW 104
           KPPGV     + A+  L+  D+   +  WP     +++G+  +     +P V++ H   W
Sbjct: 280 KPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSHHVMEGYAYILTHPGIPCVFYDHFYDW 339


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,262,182
Number of Sequences: 539616
Number of extensions: 1896955
Number of successful extensions: 4637
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4635
Number of HSP's gapped (non-prelim): 11
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)