Query 033411
Match_columns 120
No_of_seqs 103 out of 109
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 13:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3091 Nuclear pore complex, 99.9 2.4E-24 5.2E-29 187.8 7.0 100 1-108 258-360 (508)
2 PF13874 Nup54: Nucleoporin co 99.7 2.7E-18 5.9E-23 127.1 1.5 55 48-107 1-55 (141)
3 PF08031 BBE: Berberine and be 76.7 2 4.3E-05 26.4 1.8 14 14-29 25-38 (47)
4 PRK05939 hypothetical protein; 46.3 16 0.00035 30.9 2.3 37 72-109 249-285 (397)
5 PF00611 FCH: Fes/CIP4, and EF 46.2 35 0.00076 21.9 3.5 32 76-107 3-34 (91)
6 PRK07812 O-acetylhomoserine am 43.0 18 0.00038 31.3 2.1 31 79-109 288-318 (436)
7 PRK08045 cystathionine gamma-s 42.7 19 0.0004 30.4 2.1 30 79-108 240-269 (386)
8 TIGR02080 O_succ_thio_ly O-suc 41.5 22 0.00047 29.9 2.3 31 79-109 239-269 (382)
9 PRK09028 cystathionine beta-ly 40.2 21 0.00046 30.5 2.1 38 71-109 241-278 (394)
10 COG1242 Predicted Fe-S oxidore 39.8 29 0.00063 29.9 2.8 45 10-64 64-112 (312)
11 PF10650 zf-C3H1: Putative zin 39.4 14 0.00031 20.4 0.7 10 28-37 13-22 (23)
12 PF01053 Cys_Met_Meta_PP: Cys/ 38.4 23 0.00049 30.3 2.0 36 72-108 239-274 (386)
13 PRK05967 cystathionine beta-ly 38.3 26 0.00056 30.1 2.4 54 54-109 226-281 (395)
14 PRK08861 cystathionine gamma-s 38.3 22 0.00047 30.2 1.9 36 73-109 236-271 (388)
15 PRK06084 O-acetylhomoserine am 38.2 23 0.0005 30.3 2.0 31 79-109 279-309 (425)
16 smart00055 FCH Fes/CIP4 homolo 37.2 63 0.0014 20.9 3.6 32 76-107 3-34 (87)
17 PRK08248 O-acetylhomoserine am 36.5 26 0.00057 30.1 2.1 31 79-109 284-314 (431)
18 PRK05613 O-acetylhomoserine am 35.0 29 0.00062 30.1 2.1 31 79-109 293-323 (437)
19 PF10436 BCDHK_Adom3: Mitochon 34.1 22 0.00048 26.9 1.2 55 52-111 78-132 (164)
20 COG0626 MetC Cystathionine bet 33.8 33 0.00071 30.0 2.3 54 53-108 226-282 (396)
21 PLN03044 GTP cyclohydrolase I; 33.0 35 0.00075 27.1 2.1 32 80-111 97-135 (188)
22 PRK08114 cystathionine beta-ly 32.8 32 0.00069 29.6 2.1 54 54-109 226-281 (395)
23 PRK06176 cystathionine gamma-s 31.7 36 0.00079 28.5 2.2 30 79-108 237-266 (380)
24 PF01227 GTP_cyclohydroI: GTP 30.7 36 0.00077 26.8 1.9 31 81-111 92-129 (179)
25 TIGR01326 OAH_OAS_sulfhy OAH/O 30.0 42 0.00091 28.4 2.3 38 72-110 270-307 (418)
26 cd00642 GTP_cyclohydro1 GTP cy 29.9 42 0.00091 26.5 2.1 32 80-111 96-134 (185)
27 TIGR00063 folE GTP cyclohydrol 29.4 43 0.00094 26.3 2.1 31 81-111 92-129 (180)
28 PRK08064 cystathionine beta-ly 28.1 49 0.0011 27.7 2.4 30 80-109 242-271 (390)
29 TIGR01324 cysta_beta_ly_B cyst 27.7 57 0.0012 27.4 2.7 54 54-109 212-267 (377)
30 PRK07269 cystathionine gamma-s 26.2 47 0.001 27.7 1.9 31 79-109 239-269 (364)
31 KOG0053 Cystathionine beta-lya 26.1 49 0.0011 29.4 2.1 54 54-108 240-294 (409)
32 PRK09347 folE GTP cyclohydrola 25.9 56 0.0012 25.8 2.2 32 80-111 99-137 (188)
33 KOG3819 Uncharacterized conser 25.7 51 0.0011 30.2 2.2 29 80-108 87-115 (513)
34 PRK08134 O-acetylhomoserine am 24.9 52 0.0011 28.3 2.0 31 79-109 284-314 (433)
35 PRK07671 cystathionine beta-ly 24.6 57 0.0012 27.2 2.1 30 79-108 237-266 (377)
36 PRK12606 GTP cyclohydrolase I; 23.8 63 0.0014 25.9 2.2 32 80-111 111-149 (201)
37 PRK07582 cystathionine gamma-l 23.2 62 0.0013 26.8 2.1 31 79-109 235-265 (366)
38 PRK06702 O-acetylhomoserine am 23.2 57 0.0012 28.4 1.9 31 79-109 281-311 (432)
39 PF06760 DUF1221: Protein of u 22.5 18 0.00039 29.6 -1.1 15 104-118 85-99 (217)
40 PRK08574 cystathionine gamma-s 22.1 63 0.0014 27.1 2.0 31 79-109 240-270 (385)
41 PRK05994 O-acetylhomoserine am 21.8 69 0.0015 27.3 2.2 31 79-109 283-313 (427)
42 PF06301 Lambda_Kil: Bacteriop 20.9 65 0.0014 20.4 1.4 12 53-64 19-30 (43)
43 KOG0424 Ubiquitin-protein liga 20.7 24 0.00051 27.8 -0.8 24 20-45 65-89 (158)
44 PRK06434 cystathionine gamma-l 20.6 66 0.0014 27.4 1.8 53 54-108 224-278 (384)
45 PF01056 Myc_N: Myc amino-term 20.5 34 0.00073 29.4 0.0 28 34-61 19-52 (329)
46 PRK07811 cystathionine gamma-s 20.3 75 0.0016 26.6 2.0 31 79-109 249-279 (388)
47 PRK07810 O-succinylhomoserine 20.0 74 0.0016 26.9 2.0 30 79-108 258-287 (403)
No 1
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-24 Score=187.84 Aligned_cols=100 Identities=27% Similarity=0.430 Sum_probs=91.7
Q ss_pred CCCCCCcccCchHHHHHHHHHhhccCCCCCCCcceeeeccCC---CCCCcCCCCCCCHHHHHHHHhcCCCCCCCCCCCcc
Q 033411 1 MAPVAPLQFSLAERDIQAIVDAYKEEPTNPKYAFKHLLFSVT---EPQFRVKPPGVSDIMWAEAMGKLEGMDSTDRERLW 77 (120)
Q Consensus 1 ~~~~~~~~~~~~~~qi~~Ik~aW~~DP~sp~c~Fk~~fYNvv---dp~~~~kP~gvd~~~W~eAl~k~pg~dnpdp~~li 77 (120)
|++++|.|-+|.| +.+++.+.| +++.|+|++.+|+||.+ |+.+|.||+|||+++|+||| +||||++++|
T Consensus 258 ~a~~~~~p~~~~~-~~q~~~~~~--~~n~~~t~~~afv~~~~~q~e~~L~~kP~gVd~~~W~QA~-----~dnp~s~kli 329 (508)
T KOG3091|consen 258 VAGRIPAPQSLND-QVQKTLKEW--LLNTPKTRVLAFVYLSVAQTEAYLETKPAGVDQRIWRQAM-----KDNPPSNKLI 329 (508)
T ss_pred cccCCCcchhHHH-HHHHHHHHH--hhcCCcchhhhhhccCHHHHHHHhcCCCCCcCHHHHHHHh-----hcCCCccccc
Confidence 5677888888988 888889999 99999999999999943 56678999999999999999 6999999999
Q ss_pred ceecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 78 PQLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 78 PVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
||+|+||+||++|+|+|++++++|+.+|++-
T Consensus 330 PVpvvGF~dL~~R~K~Q~q~~~~~r~ri~~i 360 (508)
T KOG3091|consen 330 PVPVVGFEDLRQRLKVQDQEVKQHRIRINAI 360 (508)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998863
No 2
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=99.70 E-value=2.7e-18 Score=127.12 Aligned_cols=55 Identities=29% Similarity=0.538 Sum_probs=8.3
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHh
Q 033411 48 VKPPGVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEI 107 (120)
Q Consensus 48 ~kP~gvd~~~W~eAl~k~pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~ 107 (120)
+||+|+|+.+|++|+ .+||||++||||+++||+||.+|+++|++++++++.+|+.
T Consensus 1 ~~P~~~d~~~W~~A~-----~~nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~ 55 (141)
T PF13874_consen 1 QPPPGIDEELWEQAL-----RDNPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKE 55 (141)
T ss_dssp --------------------------------------------------HHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHH-----HHCcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999 5899999999999999999999999999999999888763
No 3
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=76.68 E-value=2 Score=26.41 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=10.8
Q ss_pred HHHHHHHHhhccCCCC
Q 033411 14 RDIQAIVDAYKEEPTN 29 (120)
Q Consensus 14 ~qi~~Ik~aW~~DP~s 29 (120)
+.|.+||.+| ||.|
T Consensus 25 ~rL~~iK~~y--DP~n 38 (47)
T PF08031_consen 25 DRLRAIKRKY--DPDN 38 (47)
T ss_dssp HHHHHHHHHH---TT-
T ss_pred HHHHHHHHHh--Cccc
Confidence 5799999999 8875
No 4
>PRK05939 hypothetical protein; Provisional
Probab=46.26 E-value=16 Score=30.91 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 72 DRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 72 dp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+|..-| .+.+|-+.|.-|++.|.+....+..||+.|-
T Consensus 249 ~p~~a~-l~~rgl~tl~~R~~~~~~na~~la~~L~~~p 285 (397)
T PRK05939 249 SSEAAH-RIAIGAETLALRVDRSCSNALALAQFLEAHP 285 (397)
T ss_pred CHHHHH-HHHcCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444 5669999999999999999999999999864
No 5
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=46.22 E-value=35 Score=21.90 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=26.2
Q ss_pred ccceecccHHHHHHHhhchHHHHHHHHHHHHh
Q 033411 76 LWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEI 107 (120)
Q Consensus 76 liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~ 107 (120)
||--+-.||+-|.+|++.....+..+..+++.
T Consensus 3 F~~~~~~g~~~l~~~~~~~~~~~~~l~~~~ke 34 (91)
T PF00611_consen 3 FWSDLWDGFEVLFKRLKQGIKLLEELASFFKE 34 (91)
T ss_dssp TTSTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556689999999999999988888877764
No 6
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.04 E-value=18 Score=31.34 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=28.9
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+++|-+.|..|++.|.+....+..||+.|-
T Consensus 288 l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p 318 (436)
T PRK07812 288 LIAQGLETLSLRIERHVANAQRVAEFLEARD 318 (436)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999873
No 7
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=42.72 E-value=19 Score=30.36 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=27.6
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
..++|.+.|..|++.|.+....+..||+.|
T Consensus 240 l~~rgl~tl~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 240 LLLRGLRTLVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 467788999999999999999999999986
No 8
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=41.47 E-value=22 Score=29.86 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=27.9
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
...+|.+.|..|++.|.+....+..||+.|-
T Consensus 239 l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p 269 (382)
T TIGR02080 239 LTLRGLRTLVARMRLQQRNAQAIVEYLQTQP 269 (382)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3488999999999999999999999999754
No 9
>PRK09028 cystathionine beta-lyase; Provisional
Probab=40.25 E-value=21 Score=30.49 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 71 TDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 71 pdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+|.--| .+.+|-+-|.-|++.|.+....+..||+.|-
T Consensus 241 ~~p~~a~-l~~rgl~TL~lR~~~~~~na~~la~~L~~~p 278 (394)
T PRK09028 241 TSPDDVY-LAMRGLRTLGVRLAQHEKNALKVANWLATRP 278 (394)
T ss_pred CCHHHHH-HHHcccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444445 6789999999999999999999999999873
No 10
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.81 E-value=29 Score=29.93 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=30.2
Q ss_pred CchHHHHHHHHH----hhccCCCCCCCcceeeeccCCCCCCcCCCCCCCHHHHHHHHhc
Q 033411 10 SLAERDIQAIVD----AYKEEPTNPKYAFKHLLFSVTEPQFRVKPPGVSDIMWAEAMGK 64 (120)
Q Consensus 10 ~~~~~qi~~Ik~----aW~~DP~sp~c~Fk~~fYNvvdp~~~~kP~gvd~~~W~eAl~k 64 (120)
||++ |+..+++ +|+ .-+|-.||++-+..-. |..+-.++|++||+.
T Consensus 64 ~i~~-Q~~~q~~~~~kK~~------~~kyiaYFQ~~TNTyA---pvevLre~ye~aL~~ 112 (312)
T COG1242 64 SIAE-QFKEQAERMHKKWK------RGKYIAYFQAYTNTYA---PVEVLREMYEQALSE 112 (312)
T ss_pred CHHH-HHHHHHHHHHHhhc------CCcEEEEEeccccccC---cHHHHHHHHHHHhCc
Confidence 4554 5555555 993 2339999999664432 345667899999964
No 11
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=39.40 E-value=14 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.3
Q ss_pred CCCCCcceee
Q 033411 28 TNPKYAFKHL 37 (120)
Q Consensus 28 ~sp~c~Fk~~ 37 (120)
++++|.||||
T Consensus 13 nd~~C~~QHf 22 (23)
T PF10650_consen 13 NDPDCEFQHF 22 (23)
T ss_pred CCCCCCcccc
Confidence 4778999986
No 12
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=38.42 E-value=23 Score=30.33 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 72 DRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 72 dp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
+|.--| .+.+|-+.|.-|++.|.+....+..||+.|
T Consensus 239 ~p~da~-ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~h 274 (386)
T PF01053_consen 239 SPFDAW-LLLRGLRTLPLRMERQNENAEALAEFLEEH 274 (386)
T ss_dssp -HHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHH-HHhcCCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444 567899999999999999999999999987
No 13
>PRK05967 cystathionine beta-lyase; Provisional
Probab=38.34 E-value=26 Score=30.09 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=39.4
Q ss_pred CHHHHHHHH--hcCCCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 54 SDIMWAEAM--GKLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 54 d~~~W~eAl--~k~pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+++.|++.. .+.-| ...+|.--| .+.+|-+.|.-|++.|.+....+..||+.|=
T Consensus 226 ~~~~~~~l~~~~~~~G-~~~~p~da~-l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp 281 (395)
T PRK05967 226 NEKCWPQLLEAHGTLG-LCAGPDDTY-QILRGLRTMGIRLEHHRKSALEIARWLEGRP 281 (395)
T ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHH-HHHcCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566777543 22212 224444455 7889999999999999999999999999883
No 14
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=38.30 E-value=22 Score=30.21 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 73 RERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 73 p~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
|..-| .+.+|-+-|.-|++.|.+...++..||+.|-
T Consensus 236 p~~a~-l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p 271 (388)
T PRK08861 236 PFDSY-MTLRGIRTLGARMRVHEESAQQILAYLQTQS 271 (388)
T ss_pred hHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344 7899999999999999999999999999874
No 15
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.16 E-value=23 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=28.4
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
++..|-+.|..|++.|.+....+..||+.|=
T Consensus 279 l~lrgl~tl~~R~~~~~~na~~la~~L~~~p 309 (425)
T PRK06084 279 LILQGLETLALRMERHTENALKVARYLQQHP 309 (425)
T ss_pred HHHcCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678999999999999999999999999863
No 16
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=37.16 E-value=63 Score=20.89 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=25.0
Q ss_pred ccceecccHHHHHHHhhchHHHHHHHHHHHHh
Q 033411 76 LWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEI 107 (120)
Q Consensus 76 liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~ 107 (120)
+|-.+-.||+-|.+|++.-.+....+..++..
T Consensus 3 f~~~~~~g~~~L~~~~~~~~~~~~~~~~f~~~ 34 (87)
T smart00055 3 FWSELDDGFEALLSRLKNGLRLLEDLKKFIRE 34 (87)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556789999999998888888777766653
No 17
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.50 E-value=26 Score=30.08 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=29.0
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+++|-+.|.-|++.|.+....+..||+.|-
T Consensus 284 l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p 314 (431)
T PRK08248 284 LLLQGLETLHLRMERHSENALAVAKFLEEHE 314 (431)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999874
No 18
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.00 E-value=29 Score=30.06 Aligned_cols=31 Identities=32% Similarity=0.230 Sum_probs=28.4
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+.+|-+.|.-|++.|.+....+..||+.|=
T Consensus 293 l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp 323 (437)
T PRK05613 293 VTAQGLDTLSLRLERHNENAIKVAEFLNNHE 323 (437)
T ss_pred HHHcccCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4679999999999999999999999999873
No 19
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=34.06 E-value=22 Score=26.95 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhhhc
Q 033411 52 GVSDIMWAEAMGKLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 52 gvd~~~W~eAl~k~pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
..+..++.+.|++.-... ...+|.++.||.|++++.+.. ..-.+++.+||.|.-|
T Consensus 78 ~~~~~~F~~~l~~i~~~H----~~vv~~lA~G~~E~~~~~~~~-~~~~~i~~fLd~f~~s 132 (164)
T PF10436_consen 78 LEDNEKFTELLERILDRH----SDVVPTLAQGVLELKKYLQSS-ESEEQIQSFLDRFYRS 132 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT----TTHHHHHHHHHHHHHHHC--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHH
Confidence 456888999887654444 348999999999999998222 1223667777776554
No 20
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.85 E-value=33 Score=30.02 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCHHHHHHH--HhcC-CCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 53 VSDIMWAEA--MGKL-EGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 53 vd~~~W~eA--l~k~-pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
-++..|+.. ..++ =| ..++|..-| .+.+|-+.|.-|++.|.+....+..||+.|
T Consensus 226 ~~~~~~~~~~~~~~~~~G-~~l~p~dA~-l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~ 282 (396)
T COG0626 226 PNEELYELLFFAQRANTG-AVLSPFDAW-LLLRGLRTLALRMERHNENALKIAEFLADH 282 (396)
T ss_pred ChHHHHHHHHHHHHhhcC-CCCCHHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 356777775 3322 22 222333332 578999999999999999999999999984
No 21
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=33.03 E-value=35 Score=27.09 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.8
Q ss_pred ecccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 80 LVQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 80 l~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
.+.|++-| ++|+++|++.+.++...|....+.
T Consensus 97 ~ViGLSKl~RiV~~~arRlQiQERLT~qIa~~l~~~l~p 135 (188)
T PLN03044 97 VILGLSKLARIAEVYARRLQTQERLTRQIADAIVESVEP 135 (188)
T ss_pred ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhhCC
Confidence 46788766 579999999999999999887765
No 22
>PRK08114 cystathionine beta-lyase; Provisional
Probab=32.82 E-value=32 Score=29.59 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=38.0
Q ss_pred CHHHHHHHHh--cCCCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 54 SDIMWAEAMG--KLEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 54 d~~~W~eAl~--k~pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+++.|++... +.-|. ..+|..-| .+.+|-+-|.-|++.|.+....+..||+.|-
T Consensus 226 ~~~~~~~l~~~~~~~G~-~~~p~~a~-l~~rgl~TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 226 NARCWEQLRENSYLMGQ-MVDADTAY-MTSRGLRTLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred CHHHHHHHHHHHHhccC-CCCHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666764321 11121 23444444 5679999999999999999999999999874
No 23
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=31.68 E-value=36 Score=28.49 Aligned_cols=30 Identities=33% Similarity=0.323 Sum_probs=27.4
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
...+|.+.|..|++.|.+....+..||+.|
T Consensus 237 l~~~gl~tl~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 237 LLQRGIKTLGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 446899999999999999999999999987
No 24
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=30.70 E-value=36 Score=26.78 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=23.5
Q ss_pred cccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 81 VQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 81 ~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
+.|+.-| ++|+++|++.+.++...|+.....
T Consensus 92 viGLSKl~RiV~~~arRlQlQERLT~qIa~~l~~~l~p 129 (179)
T PF01227_consen 92 VIGLSKLARIVDFFARRLQLQERLTRQIADALEEILGP 129 (179)
T ss_dssp EE-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHHTS
T ss_pred ccChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCC
Confidence 4566654 579999999999999999988653
No 25
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=30.04 E-value=42 Score=28.38 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhhh
Q 033411 72 DRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHVH 110 (120)
Q Consensus 72 dp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~h 110 (120)
.|.--| .++.|.+.|.-|++.|.+....+..||..|-+
T Consensus 270 ~p~~a~-~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~ 307 (418)
T TIGR01326 270 SPFNAF-LLLQGLETLSLRMERHVENALKVAEFLEAHPK 307 (418)
T ss_pred CHHHHH-HHHCCcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444 47899999999999999999999999998753
No 26
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=29.93 E-value=42 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=26.2
Q ss_pred ecccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 80 LVQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 80 l~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
.+.|++-| ++|+++|++.+.+...-|....+.
T Consensus 96 ~ViGLSKl~RiV~~~arRlQiQERLt~qIa~al~~~l~~ 134 (185)
T cd00642 96 KVIGLSKLARIVEFFSRRLQVQERLTKQIAVAIQEILGP 134 (185)
T ss_pred eeeeHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCC
Confidence 35777765 579999999999999999887654
No 27
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=29.43 E-value=43 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred cccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 81 VQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 81 ~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
+.|++-| ++|+++|++.+.+....|......
T Consensus 92 ViGLSKl~RiV~~~arRlQiQERlT~qIa~~l~~~l~p 129 (180)
T TIGR00063 92 VIGLSKIARIVEFFARRPQVQERLTQQIAEALQEILEP 129 (180)
T ss_pred eecHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCC
Confidence 5677765 579999999999999999877665
No 28
>PRK08064 cystathionine beta-lyase; Provisional
Probab=28.08 E-value=49 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=27.6
Q ss_pred ecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 80 LVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 80 l~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
...|.+.|..|++.|.+....+..||+.|-
T Consensus 242 ~~~gl~tl~~R~~~~~~~a~~la~~L~~~~ 271 (390)
T PRK08064 242 VLRGLKTLHVRLEHSSETANKIALYLQEHP 271 (390)
T ss_pred HHcccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 559999999999999999999999999873
No 29
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=27.73 E-value=57 Score=27.40 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.9
Q ss_pred CHHHHHHHHhc--CCCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 54 SDIMWAEAMGK--LEGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 54 d~~~W~eAl~k--~pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+++.|+..... .-|. ..+|..-| ...+|-+.|.-|++.|.+....+..||+.|-
T Consensus 212 ~~~~~~~l~~~~~~~G~-~l~p~~a~-~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p 267 (377)
T TIGR01324 212 NARTWDQLREHSYLMGQ-MVDADDAY-TTLRGLRTLGVRLKQHQESSLAIAKWLSEQP 267 (377)
T ss_pred CHHHHHHHHHHHHHhCC-CCCHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45666644321 1121 23444333 4558999999999999999999999999873
No 30
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=26.20 E-value=47 Score=27.71 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=28.2
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+..+|-+-|..|++.|.+....++.||+.|-
T Consensus 239 l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p 269 (364)
T PRK07269 239 LLMRGLKTLSLRMERSTANAQEVVAFLKKSP 269 (364)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678999999999999999999999999764
No 31
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.09 E-value=49 Score=29.37 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=39.7
Q ss_pred CHHHHHHHHhcCCCC-CCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 54 SDIMWAEAMGKLEGM-DSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 54 d~~~W~eAl~k~pg~-dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
+++.|.+.+.-.... .++||..++ -+.+||+.|.-|++.|.+..-....||+.|
T Consensus 240 ~~~~~~~l~~~~~~lg~~~~p~~~~-ll~Rglktl~lRi~~~~ena~~~A~~Le~~ 294 (409)
T KOG0053|consen 240 SEELASRLKFLQEDLGWCEDPFDLF-LLSRGLKTLHLRINKHSENALKIALLLEAH 294 (409)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCcchhhhhHHHHHHHHHHHHHHhhhC
Confidence 577888776543222 233443333 457999999999999999999999999987
No 32
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=25.87 E-value=56 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=25.7
Q ss_pred ecccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 80 LVQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 80 l~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
-+.|++-| ++|+++|++.+.+...-|......
T Consensus 99 ~ViGLSKl~Riv~~~arRlQiQERlT~qIa~al~~~l~p 137 (188)
T PRK09347 99 KVIGLSKIARIVDFFARRPQVQERLTAQIADALQEILGP 137 (188)
T ss_pred ccccHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCC
Confidence 46787765 579999999999999998876543
No 33
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=25.67 E-value=51 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.9
Q ss_pred ecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 80 LVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 80 l~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
.+.|-+|+++|++.+.+++..+.-+|++|
T Consensus 87 eir~lK~~nqKlq~~nqElrdL~cflddd 115 (513)
T KOG3819|consen 87 EIRGLKDANQKLQQDNQELRDLCCFLDDD 115 (513)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 46799999999999999999887777765
No 34
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.86 E-value=52 Score=28.34 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=28.1
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+..|-+.|..|++.|.+....+..||+.|-
T Consensus 284 l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p 314 (433)
T PRK08134 284 QLLQGIETLPLRMERHVANTRKVVAFLASHP 314 (433)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678999999999999999999999999763
No 35
>PRK07671 cystathionine beta-lyase; Provisional
Probab=24.58 E-value=57 Score=27.24 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=27.0
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
.+..|-+.|..|++.|.+....+..||+.|
T Consensus 237 l~~~~l~tl~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 237 LLLRGLKTLGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred HHHcCcChHHHHHHHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999999986
No 36
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=23.80 E-value=63 Score=25.92 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.0
Q ss_pred ecccHHHH-------HHHhhchHHHHHHHHHHHHhhhhc
Q 033411 80 LVQGFKDL-------SNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 80 l~~GF~dL-------~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
.+.|+.-| ++|+++|++.+.++..-|..+...
T Consensus 111 ~VvGLSKl~RiV~~~arRlQvQERLT~qIa~~l~~~l~p 149 (201)
T PRK12606 111 KVLGLSKIARIVDMFARRLQIQENLTRQIATAVVTVTQA 149 (201)
T ss_pred ccccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCC
Confidence 35777765 579999999999999999877654
No 37
>PRK07582 cystathionine gamma-lyase; Validated
Probab=23.19 E-value=62 Score=26.81 Aligned_cols=31 Identities=19% Similarity=0.022 Sum_probs=28.2
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
...+|-+.|..|++.|.+....++.||+.|-
T Consensus 235 l~~r~l~tl~~R~~~~~~na~~la~~L~~~p 265 (366)
T PRK07582 235 LAHRSLGTLGLRFARQCANALAVAELLAGHP 265 (366)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6678999999999999999999999999864
No 38
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.18 E-value=57 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=28.5
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
++.+|-+-|..|++.|.+....+..||+.|-
T Consensus 281 l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p 311 (432)
T PRK06702 281 ISNIGLETLHLRMERHSENALAVAKWLADHE 311 (432)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999999874
No 39
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=22.49 E-value=18 Score=29.63 Aligned_cols=15 Identities=40% Similarity=0.999 Sum_probs=12.8
Q ss_pred HHHhhhhcceeeeee
Q 033411 104 WLEIHVHSFVCCFHV 118 (120)
Q Consensus 104 ~l~~~~h~~~~~~~~ 118 (120)
-.+.|.|..+|||-|
T Consensus 85 cVE~hiHnlL~c~~v 99 (217)
T PF06760_consen 85 CVEFHIHNLLWCFPV 99 (217)
T ss_pred hHHHHHHHHHHHHHH
Confidence 468999999999864
No 40
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=22.13 E-value=63 Score=27.12 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=27.6
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
..+.|.+-|..|++.|.+....+..||+.|-
T Consensus 240 l~l~~l~tL~~R~~~~~~na~~la~~L~~~p 270 (385)
T PRK08574 240 LVLRGLKTLEVRFERQCRNAMAIAEFLSEHP 270 (385)
T ss_pred HHHcccCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999998653
No 41
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.75 E-value=69 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.3
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
.+..|-+.|..|++.|.+....+..||+-|=
T Consensus 283 l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p 313 (427)
T PRK05994 283 LILTGIETLPLRMQRHSDNALAVAEWLKGHP 313 (427)
T ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999998764
No 42
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=20.90 E-value=65 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=9.7
Q ss_pred CCHHHHHHHHhc
Q 033411 53 VSDIMWAEAMGK 64 (120)
Q Consensus 53 vd~~~W~eAl~k 64 (120)
-|..+|.||+..
T Consensus 19 GD~~mw~eA~e~ 30 (43)
T PF06301_consen 19 GDEKMWSEANEA 30 (43)
T ss_pred ccHHHHHHHHHH
Confidence 388999999864
No 43
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=24 Score=27.75 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=17.6
Q ss_pred HHhhccCCCCCCCcceeeecc-CCCCC
Q 033411 20 VDAYKEEPTNPKYAFKHLLFS-VTEPQ 45 (120)
Q Consensus 20 k~aW~~DP~sp~c~Fk~~fYN-vvdp~ 45 (120)
.+.| --+-|+|+|++=||- .|.|.
T Consensus 65 ~~dy--P~~PPkckF~~pl~HPNVyps 89 (158)
T KOG0424|consen 65 PDDY--PSSPPKCKFKPPLFHPNVYPS 89 (158)
T ss_pred CccC--CCCCCccccCCCCcCCCcCCC
Confidence 3566 445579999999998 56665
No 44
>PRK06434 cystathionine gamma-lyase; Validated
Probab=20.58 E-value=66 Score=27.40 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=37.3
Q ss_pred CHHHHHHHHhcC--CCCCCCCCCCccceecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 54 SDIMWAEAMGKL--EGMDSTDRERLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 54 d~~~W~eAl~k~--pg~dnpdp~~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
|+..|+++...+ -|. +.+|-.-+ +.+.|-+-|..|++.|.+...++..||+-|
T Consensus 224 ~~~~~~~~~~~~~~~G~-~~~~~~A~-l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 224 NKSIFNNLVERRKTLGS-NPDPIQAY-LALRGLKTLGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred cHHHHHHHHHHHHhcCC-CCCHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 566777654322 121 12222223 568999999999999999999999999976
No 45
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=20.50 E-value=34 Score=29.41 Aligned_cols=28 Identities=14% Similarity=0.446 Sum_probs=0.0
Q ss_pred ceeeeccCCCCCCcC------CCCCCCHHHHHHH
Q 033411 34 FKHLLFSVTEPQFRV------KPPGVSDIMWAEA 61 (120)
Q Consensus 34 Fk~~fYNvvdp~~~~------kP~gvd~~~W~eA 61 (120)
+|+|||.=.|..||. .|+.-++.+|+.-
T Consensus 19 ~qp~Fy~d~~edfy~~~~~~~~~~aPsEDIWKKF 52 (329)
T PF01056_consen 19 LQPYFYPDEDEDFYRSGPDFSQPTAPSEDIWKKF 52 (329)
T ss_dssp ----------------------------------
T ss_pred cccccccCcccccccccccccCCCCchHHHHhhc
Confidence 689999633335663 3556789999875
No 46
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.26 E-value=75 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=27.0
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIHV 109 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~ 109 (120)
+...|-+.|..|++.|.+....+..||+.|-
T Consensus 249 l~~~~L~tl~~R~~~~~~na~~la~~L~~~p 279 (388)
T PRK07811 249 LTLRGLKTLAVRMDRHSENAEAVAEFLAGHP 279 (388)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3457889999999999999999999999764
No 47
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=20.01 E-value=74 Score=26.94 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=27.7
Q ss_pred eecccHHHHHHHhhchHHHHHHHHHHHHhh
Q 033411 79 QLVQGFKDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 79 Vl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
..+.|.+.|..|++.|.+....+..||+.|
T Consensus 258 l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 258 VLLKGLETLALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 477899999999999999999999999976
Done!