Query 033411
Match_columns 120
No_of_seqs 103 out of 109
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpq_B ATG29, KLTH0D11660P; au 33.0 28 0.00095 26.3 2.6 30 82-111 122-157 (159)
2 4djc_B Sodium channel protein 29.6 27 0.00092 19.8 1.6 29 53-84 2-30 (35)
3 2kne_B CAM, ATPase, Ca++ trans 29.5 45 0.0015 18.4 2.5 18 84-102 9-26 (28)
4 2dk7_A Transcription elongatio 29.4 24 0.00083 23.4 1.6 33 35-67 31-65 (73)
5 3tsh_A Pollen allergen PHL P 4 24.1 36 0.0012 28.1 2.1 14 14-29 472-485 (500)
6 2d7c_C RAB11 family-interactin 23.9 94 0.0032 18.4 3.4 24 84-107 3-26 (42)
7 2v6u_A Pterin-4A-carbinolamine 23.0 34 0.0012 23.2 1.5 24 1-26 1-27 (104)
8 3g36_A Protein DPY-30 homolog; 22.5 33 0.0011 21.3 1.2 35 75-111 16-50 (55)
9 2hv8_D RAB11 family-interactin 21.4 95 0.0032 20.0 3.3 24 84-107 25-48 (64)
10 3nmd_A CGMP dependent protein 21.3 93 0.0032 20.5 3.3 24 85-108 43-66 (72)
11 1zr6_A Glucooligosaccharide ox 20.2 47 0.0016 27.6 2.1 14 14-29 455-468 (503)
No 1
>4hpq_B ATG29, KLTH0D11660P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=32.96 E-value=28 Score=26.34 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=18.4
Q ss_pred ccHHHHHHHhhchHHHHHHH------HHHHHhhhhc
Q 033411 82 QGFKDLSNRLKVPVVYFRHV------AFWLEIHVHS 111 (120)
Q Consensus 82 ~GF~dL~~R~k~Q~~~v~~~------~~~l~~~~h~ 111 (120)
.|-.+|.++.+.|.++++.+ ++||+-|-|-
T Consensus 122 l~Ld~Li~LY~~QNeQLq~l~d~la~~~~~~~~~~~ 157 (159)
T 4hpq_B 122 LPLEKLVQLYKLQNDQLHSLFNTLAGQFYLNAHHHH 157 (159)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhheeecccccc
Confidence 57899999999999999988 7899888763
No 2
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=29.56 E-value=27 Score=19.78 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=20.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCccceecccH
Q 033411 53 VSDIMWAEAMGKLEGMDSTDRERLWPQLVQGF 84 (120)
Q Consensus 53 vd~~~W~eAl~k~pg~dnpdp~~liPVl~~GF 84 (120)
++..+|-+||.+....+ |.+-||=+-.=|
T Consensus 2 ~~Qkk~y~amkKl~~kk---p~K~iprP~nk~ 30 (35)
T 4djc_B 2 NAQKKYYNAMKKLGSKK---PQKPIPRPLNKY 30 (35)
T ss_pred HhHHHHHHHHHHHcccC---CCCCcCCCCCcc
Confidence 46789999998865444 778787654433
No 3
>2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide, calcium pump, calmodulin, acetylation, calcium, isopeptide bond, methylation; NMR {Homo sapiens}
Probab=29.52 E-value=45 Score=18.40 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=13.1
Q ss_pred HHHHHHHhhchHHHHHHHH
Q 033411 84 FKDLSNRLKVPVVYFRHVA 102 (120)
Q Consensus 84 F~dL~~R~k~Q~~~v~~~~ 102 (120)
|..|. |++.|-..|..++
T Consensus 9 ~RgL~-riqtQ~rvi~af~ 26 (28)
T 2kne_B 9 FRGLN-RIQTQIKVVKAFH 26 (28)
T ss_dssp HHHHH-HHHHHHHHHHHHH
T ss_pred eccHH-HHHHHHHHHHhhh
Confidence 44555 9999988887764
No 4
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.43 E-value=24 Score=23.42 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=20.8
Q ss_pred eeeecc-CCCCCCcCCCCCC-CHHHHHHHHhcCCC
Q 033411 35 KHLLFS-VTEPQFRVKPPGV-SDIMWAEAMGKLEG 67 (120)
Q Consensus 35 k~~fYN-vvdp~~~~kP~gv-d~~~W~eAl~k~pg 67 (120)
|.|||| .+-..+-.+|... +..+-+.||++-|-
T Consensus 31 R~fyyN~~Tk~S~WekP~eLk~~~e~dr~l~~~P~ 65 (73)
T 2dk7_A 31 RVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPH 65 (73)
T ss_dssp CEEEEETTTTEECSSCCTTTTTCSHHHHHHHSCTT
T ss_pred CEEEecCcccceeccCChHhcCHHHHHHHHhcCCc
Confidence 589999 5555565666543 44456688875443
No 5
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=24.15 E-value=36 Score=28.13 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=12.1
Q ss_pred HHHHHHHHhhccCCCC
Q 033411 14 RDIQAIVDAYKEEPTN 29 (120)
Q Consensus 14 ~qi~~Ik~aW~~DP~s 29 (120)
+.|.+||.+| ||.|
T Consensus 472 ~RL~~IK~ky--DP~n 485 (500)
T 3tsh_A 472 ERLAITKGKV--DPTD 485 (500)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--Cccc
Confidence 4689999999 9885
No 6
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=23.93 E-value=94 Score=18.44 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=20.8
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Q 033411 84 FKDLSNRLKVPVVYFRHVAFWLEI 107 (120)
Q Consensus 84 F~dL~~R~k~Q~~~v~~~~~~l~~ 107 (120)
.+||.+-++-|++...+++.|+|.
T Consensus 3 ~~eL~~~l~~qee~n~~Le~YID~ 26 (42)
T 2d7c_C 3 RDELMEAIQKQEEINFRLQDYIDR 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999988899999874
No 7
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=22.96 E-value=34 Score=23.17 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=16.4
Q ss_pred CCCCCCcccCchHHHHHHHHH---hhccC
Q 033411 1 MAPVAPLQFSLAERDIQAIVD---AYKEE 26 (120)
Q Consensus 1 ~~~~~~~~~~~~~~qi~~Ik~---aW~~D 26 (120)
|+|+|+.+ |+++|++..-. .|+-+
T Consensus 1 ~~~~~~~~--Ls~~ei~~~L~~l~gW~~~ 27 (104)
T 2v6u_A 1 MAPLARLA--ANSARLLQLHKTVPQWHLT 27 (104)
T ss_dssp CCSSCCCC--TTCHHHHHHHTTSTTSEEC
T ss_pred CCCccCCC--CCHHHHHHHhhcCCCCeEe
Confidence 89999877 56667766444 58543
No 8
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=22.50 E-value=33 Score=21.33 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.4
Q ss_pred CccceecccHHHHHHHhhchHHHHHHHHHHHHhhhhc
Q 033411 75 RLWPQLVQGFKDLSNRLKVPVVYFRHVAFWLEIHVHS 111 (120)
Q Consensus 75 ~liPVl~~GF~dL~~R~k~Q~~~v~~~~~~l~~~~h~ 111 (120)
.++|+++.|..+|.+. .=.+=|.-+..||-.|++.
T Consensus 16 ~V~p~L~~GL~~lak~--rP~DPi~~LA~~Ll~~~~~ 50 (55)
T 3g36_A 16 TVVPILLQGMAVLAKE--RPPNPIEFLASYLLKNKAQ 50 (55)
T ss_dssp TTHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHGGG
T ss_pred HhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhCcc
Confidence 4889999999999973 2345577777788777654
No 9
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=21.44 E-value=95 Score=19.97 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=21.3
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Q 033411 84 FKDLSNRLKVPVVYFRHVAFWLEI 107 (120)
Q Consensus 84 F~dL~~R~k~Q~~~v~~~~~~l~~ 107 (120)
.+||.+-++-|++...+++.|+|.
T Consensus 25 ~deL~~~l~eqee~n~~Le~YID~ 48 (64)
T 2hv8_D 25 RDELMEAIQKQEEINFRLQDYIDR 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999988999999885
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.27 E-value=93 Score=20.49 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=17.9
Q ss_pred HHHHHHhhchHHHHHHHHHHHHhh
Q 033411 85 KDLSNRLKVPVVYFRHVAFWLEIH 108 (120)
Q Consensus 85 ~dL~~R~k~Q~~~v~~~~~~l~~~ 108 (120)
.+|.+|+.-.++.|+.++.-|+++
T Consensus 43 ~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777888888888776
No 11
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=20.25 E-value=47 Score=27.64 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=11.9
Q ss_pred HHHHHHHHhhccCCCC
Q 033411 14 RDIQAIVDAYKEEPTN 29 (120)
Q Consensus 14 ~qi~~Ik~aW~~DP~s 29 (120)
+.|.+||.+| ||.+
T Consensus 455 ~RL~~iK~ky--DP~~ 468 (503)
T 1zr6_A 455 EKLQAIKAKY--DPED 468 (503)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--Cchh
Confidence 5789999999 8874
Done!