Query 033412
Match_columns 120
No_of_seqs 101 out of 240
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_g 60S ribosomal protein L 100.0 1.4E-64 4.8E-69 371.5 10.8 116 1-118 1-116 (121)
2 4a18_L RPL34; ribosome, eukary 100.0 6.5E-64 2.2E-68 368.8 9.7 118 1-120 1-120 (123)
3 3iz5_i 60S ribosomal protein L 100.0 5.7E-64 2E-68 367.4 -1.5 115 1-115 1-115 (119)
4 3j21_d 50S ribosomal protein L 100.0 1.5E-41 5.2E-46 238.1 7.5 83 10-95 2-84 (89)
5 2vqe_N 30S ribosomal protein S 47.1 15 0.0005 23.3 2.7 19 72-92 31-49 (61)
6 1joc_A EEA1, early endosomal a 31.2 22 0.00074 24.8 1.7 35 40-89 68-102 (125)
7 1bgf_A STAT-4; transcription f 29.2 38 0.0013 24.0 2.8 16 90-105 104-119 (124)
8 1u5k_A Hypothetical protein; O 27.4 21 0.00072 26.6 1.2 30 40-88 149-178 (244)
9 2crr_A Stromal membrane-associ 26.9 32 0.0011 24.8 2.0 31 39-88 27-57 (141)
10 2olm_A Nucleoporin-like protei 26.1 29 0.00098 25.0 1.7 32 38-88 22-53 (140)
11 1wig_A KIAA1808 protein; LIM d 25.9 32 0.0011 21.0 1.6 13 41-53 5-17 (73)
12 1qxf_A GR2, 30S ribosomal prot 25.6 64 0.0022 20.9 3.1 31 20-51 5-36 (66)
13 2k5c_A Uncharacterized protein 25.6 13 0.00045 25.7 -0.2 12 41-52 8-19 (95)
14 1e7l_A GP49, recombination end 25.5 22 0.00074 26.6 0.9 45 41-89 20-64 (157)
15 3t7l_A Zinc finger FYVE domain 25.1 36 0.0012 22.2 1.9 37 41-92 20-56 (90)
16 2xzm_N RPS29E; ribosome, trans 24.9 66 0.0023 19.9 3.0 19 72-90 27-45 (55)
17 2yw8_A RUN and FYVE domain-con 24.6 33 0.0011 22.0 1.6 36 40-90 18-53 (82)
18 3iz6_N 40S ribosomal protein S 24.4 69 0.0024 19.9 3.0 38 31-89 7-45 (56)
19 2iqj_A Stromal membrane-associ 24.1 31 0.0011 24.6 1.5 31 39-88 25-55 (134)
20 2b0o_E UPLC1; arfgap, structur 23.6 32 0.0011 26.0 1.6 36 33-87 34-69 (301)
21 1l8d_A DNA double-strand break 23.5 21 0.00072 23.6 0.5 10 43-52 49-58 (112)
22 2crw_A ARF GAP 3, ADP-ribosyla 23.4 35 0.0012 25.0 1.7 32 37-87 25-56 (149)
23 1y02_A CARP2, FYVE-ring finger 23.2 37 0.0013 23.9 1.7 35 41-90 19-53 (120)
24 2owa_A Arfgap-like finger doma 22.7 34 0.0012 24.7 1.5 33 36-87 31-63 (138)
25 3mpx_A FYVE, rhogef and PH dom 22.6 18 0.00062 28.8 0.0 42 41-97 375-416 (434)
26 2jrp_A Putative cytoplasmic pr 22.5 23 0.00078 23.8 0.5 14 43-56 33-46 (81)
27 1x62_A C-terminal LIM domain p 22.5 48 0.0017 20.2 2.0 15 39-53 13-27 (79)
28 3bbn_N Ribosomal protein S14; 21.5 50 0.0017 22.6 2.1 17 72-90 70-86 (100)
29 1j2o_A FLIN2, fusion of rhombo 20.9 43 0.0015 22.0 1.6 16 39-54 1-16 (114)
30 2qfa_B Borealin; three-helical 20.5 48 0.0016 21.1 1.7 13 86-98 1-13 (62)
31 3ung_C CMR2DHD; ferredoxin fol 20.5 1E+02 0.0035 27.9 4.4 51 40-99 266-316 (693)
No 1
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=100.00 E-value=1.4e-64 Score=371.50 Aligned_cols=116 Identities=53% Similarity=0.822 Sum_probs=110.7
Q ss_pred CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412 1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG 80 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG 80 (120)
||||||||||++|||+||++++++||||+|||||++|+++.|+|||||.+|+||+++||.+++ +||+++|+|||||||
T Consensus 1 M~qR~tyrrR~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~--rlsK~~KtvsRaYGG 78 (121)
T 3u5e_g 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYA--TVSKTHKTVSRAYGG 78 (121)
T ss_dssp -CCCCCCSSSCCSCCGGGBCCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGG--SSCGGGSCCSSTTTT
T ss_pred CCcceEecCcCCCcCCcCeeEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHH--hcccCCCCcccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033412 81 VLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAA 118 (120)
Q Consensus 81 ~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k~~~ 118 (120)
++||+||+|||++||||||||||++||++|++++++++
T Consensus 79 ~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~~ 116 (121)
T 3u5e_g 79 SRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSE 116 (121)
T ss_dssp TSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998776554
No 2
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=100.00 E-value=6.5e-64 Score=368.80 Aligned_cols=118 Identities=50% Similarity=0.780 Sum_probs=105.8
Q ss_pred CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCC--CCCCCccCCCchhhhcccCCCCCCcccccc
Q 033412 1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTG--KRIQGIPHLRPAEYKRSRLPRNRRTVNRAY 78 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg--~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaY 78 (120)
||||||||||++|||+||++++++||||+|||||+||+++.|+||||| .+|+||+++||.+++ +||+++|+|||||
T Consensus 1 m~qR~tyrrr~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~cg~~~~L~GI~~~RP~e~~--rlsK~~KtvsRaY 78 (123)
T 4a18_L 1 MAQRITYRRRCSYNTRSNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYA--TIARSAKTVSRVY 78 (123)
T ss_dssp -CCCCCCSSSCCSCCGGGCEEEEECTTSCEEEEECCCCCCCCBCCSTTTCCBCSSSCCCCTTGGG--TSCHHHHCCSSTT
T ss_pred CCcceEecCCCCCcCCCCeeEEEECCCCCEEEEEeccCCCCCcCCCCCCccccCCcCCCcHHHHH--hccccCCCcccCC
Confidence 999999999999999999999999999999999999999999999999 999999999999999 9999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033412 79 GGVLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQAAKS 120 (120)
Q Consensus 79 GG~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k~~~~~ 120 (120)
||++||+||+|||++||||||||||++||++|+++++++++|
T Consensus 79 GG~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~~~~ 120 (123)
T 4a18_L 79 GGELCHTCVRSRIIRAFLTEEVKIVKRKMISKPKTDKKKKRS 120 (123)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988877654
No 3
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=100.00 E-value=5.7e-64 Score=367.38 Aligned_cols=115 Identities=92% Similarity=1.325 Sum_probs=110.5
Q ss_pred CccceeecCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCC
Q 033412 1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGG 80 (120)
Q Consensus 1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG 80 (120)
||||||||+|++|||+||++++++||||+|||||+||+++.|+|||||.+|+||+++||.++.+.+||+++|+|||||||
T Consensus 1 m~qR~tyrrr~sYnTrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG 80 (119)
T 3iz5_i 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGG 80 (119)
T ss_dssp CHHHHHHHHCSCCSSSSCSSBCCCCSSCCCCBCCCSCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCC
T ss_pred CCcceEecccCcccCCCCeeEEEECCCCCEEEEEeccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999222999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033412 81 VLSGAAVRERIIRAFLVEEQKIVKKVLKIQKAKEK 115 (120)
Q Consensus 81 ~lC~kCVr~rI~rAFL~EEqkivk~v~k~~~~~~k 115 (120)
++||+||+|||++||||||||||++||++|++++|
T Consensus 81 ~lC~~CVr~rI~rAFLiEEqKivkkvlk~~~~~~k 115 (119)
T 3iz5_i 81 VLSGPAVRERIIRAFLVEEQKIVKKVLKIQKTKEK 115 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTTTSSCCCCCSCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999887554
No 4
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-41 Score=238.09 Aligned_cols=83 Identities=27% Similarity=0.580 Sum_probs=81.3
Q ss_pred CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412 10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE 89 (120)
Q Consensus 10 r~~Y~TrSnk~~~vrTPGgrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~ 89 (120)
+++|||+||+++++|||||+|||||+||+++.|+|||||.+|+||+++||.|++ +|+|++|+|||||| ++||+||+|
T Consensus 2 ~p~Y~TrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~--rlsK~~KtvsRaYG-~lC~~Cvr~ 78 (89)
T 3j21_d 2 KPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMR--KLPKTKKRPERPMP-HLCPRCMRK 78 (89)
T ss_dssp CCCSCCSSCCEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGG--GSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred CCccccccCceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHH--hcccCCCCcCCCcc-cchHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999 99999999999999 999999999
Q ss_pred HHHHHH
Q 033412 90 RIIRAF 95 (120)
Q Consensus 90 rI~rAF 95 (120)
+|++|-
T Consensus 79 rI~~~~ 84 (89)
T 3j21_d 79 VMKEQI 84 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 5
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=47.07 E-value=15 Score=23.27 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=14.9
Q ss_pred CccccccCCcchHHHHHHHHH
Q 033412 72 RTVNRAYGGVLSGAAVRERII 92 (120)
Q Consensus 72 ktvsRaYGG~lC~kCVr~rI~ 92 (120)
+-+-|.|| ||--|.+|.-.
T Consensus 31 rg~iRkfg--lcR~~FRe~A~ 49 (61)
T 2vqe_N 31 RSVYRFFG--LCRICLRELAH 49 (61)
T ss_dssp TTCCTTTS--SCHHHHHHHHH
T ss_pred ceeeccCc--eeHHHHHHHHh
Confidence 45678898 99999998643
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.18 E-value=22 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE 89 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~ 89 (120)
..+.|..|+.+..-+ ..|+--|.=|.++|+.|...
T Consensus 68 ~~~~C~~C~~~Fs~~---------------~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVT---------------VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSS---------------SCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccc---------------cccccCCCCCeEEChHHhCC
Confidence 345699999876521 23788999999999999654
No 7
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=29.20 E-value=38 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 033412 90 RIIRAFLVEEQKIVKK 105 (120)
Q Consensus 90 rI~rAFL~EEqkivk~ 105 (120)
+||+-+|-+|++||..
T Consensus 104 ~~i~~~L~~E~~iv~~ 119 (124)
T 1bgf_A 104 VVISNCLREERRILAA 119 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999999953
No 8
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=27.36 E-value=21 Score=26.63 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
....|+.||.+ +. . ..+-..||.+|..|..
T Consensus 149 ~l~~C~~cg~~--~~-----~------------~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 149 QTARCARCGAP--DP-----E------------HPDPLGGQLLCSKCAA 178 (244)
T ss_dssp CCSBCTTTCCB--SC-----C------------EECTTTSSEECTTTCS
T ss_pred CcCccccCCCC--CC-----C------------cEecccCEEECcccCC
Confidence 33469999987 11 1 3445689999998843
No 9
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.86 E-value=32 Score=24.76 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 39 ASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 39 ~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
+.--.|+|||.+- |. -+|=.||=.+|-.|--
T Consensus 27 p~N~~CaDCga~~-------P~------------WaS~n~GvfiC~~Csg 57 (141)
T 2crr_A 27 EDNKYCADCEAKG-------PR------------WASWNIGVFICIRCAG 57 (141)
T ss_dssp GGGSSCSSSCCSS-------CC------------SEETTTTEECCHHHHH
T ss_pred ccCCcCCCCCCCC-------CC------------eEEeccCeEEhhhhhH
Confidence 3445699998762 21 2334589999999853
No 10
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=26.15 E-value=29 Score=25.00 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 38 RASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 38 ~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
.+.--.|+|||.+- |. -+|=.||=.+|-.|--
T Consensus 22 ~p~N~~CaDCg~~~-------P~------------WaS~n~GvfiC~~Csg 53 (140)
T 2olm_A 22 LPHNRKCFDCDQRG-------PT------------YVNMTVGSFVCTSCSG 53 (140)
T ss_dssp SGGGGSCTTTCSSC-------CC------------EEETTTTEEECHHHHH
T ss_pred CcCCCcCCCCCCCC-------CC------------ceeeccCEEEchhccc
Confidence 34445699999762 21 2334578888888853
No 11
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=32 Score=20.96 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q 033412 41 GPKCPVTGKRIQG 53 (120)
Q Consensus 41 ~pkC~~cg~~L~G 53 (120)
.++|+.|+.+|.|
T Consensus 5 ~~~C~~C~~~I~~ 17 (73)
T 1wig_A 5 SSGCDSCEKYITG 17 (73)
T ss_dssp CCSCSSSCCCCSS
T ss_pred cCCcccCCCEecC
Confidence 5789999999887
No 12
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.62 E-value=64 Score=20.93 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=24.7
Q ss_pred eEEeecCC-CceEEEeeecCCCCCCCCCCCCCC
Q 033412 20 HRVVKTPG-GKLVYQSTKKRASGPKCPVTGKRI 51 (120)
Q Consensus 20 ~~~vrTPG-grlv~~y~KK~~~~pkC~~cg~~L 51 (120)
...|+=|| +.+.+.| -.-.++..|..||..|
T Consensus 5 Fm~VKCp~C~niq~VF-ShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIF-DHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEEECTTTCCEEEEE-SSCSSCEECSSSCCEE
T ss_pred eEEEECCCCCCceEEE-ecCceEEEcccCCCEE
Confidence 67889999 8888888 4456666799999877
No 13
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.58 E-value=13 Score=25.69 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q 033412 41 GPKCPVTGKRIQ 52 (120)
Q Consensus 41 ~pkC~~cg~~L~ 52 (120)
-++|+.||.+|.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 356999999875
No 14
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=25.53 E-value=22 Score=26.57 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE 89 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~ 89 (120)
...|+.|+.+|.|.... ..+= .=..-.=...--+=|.||..|=.-
T Consensus 20 ~g~C~IC~~~l~~~~~~--~~vD--HdH~~~g~~tG~VRGlLC~~CN~~ 64 (157)
T 1e7l_A 20 NGKCLICQRELNPDVQA--NHLD--HDHELNGPKAGKVRGLLCNLCDAA 64 (157)
T ss_dssp TTBCTTTCCBCCSSGGG--SEEE--ECCCCSSTTTTBEEEEECHHHHHH
T ss_pred CCcCcccCCcccccccc--cccc--CCCCCCCCCCCcchhhccHhHhch
Confidence 45799999999874321 1110 101000002223448999999653
No 15
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.14 E-value=36 Score=22.25 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHHHHH
Q 033412 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERII 92 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~rI~ 92 (120)
...|..|+.+..-+ ..|+--|.=|+++|+.|...++.
T Consensus 20 ~~~C~~C~~~F~~~---------------~RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 20 APNCMNCQVKFTFT---------------KRRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp CCBCTTTCCBCCSS---------------SCCEECTTTCCEECGGGSCEEEE
T ss_pred CCcCcCCCCcccch---------------hhCccccCCCCEECCcccCCeee
Confidence 44599998876521 23688899999999999876553
No 16
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=24.93 E-value=66 Score=19.89 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.9
Q ss_pred CccccccCCcchHHHHHHH
Q 033412 72 RTVNRAYGGVLSGAAVRER 90 (120)
Q Consensus 72 ktvsRaYGG~lC~kCVr~r 90 (120)
+-+-|.||=.||--|.+|.
T Consensus 27 rg~iRkfgl~lcR~cFRe~ 45 (55)
T 2xzm_N 27 QGLITKYEMMTCRRCFREQ 45 (55)
T ss_dssp STTCCCSSSCCCHHHHHHH
T ss_pred cchHHHhCCchhhHHHHHH
Confidence 3566889999999999985
No 17
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.56 E-value=33 Score=21.99 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHHH
Q 033412 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRER 90 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~r 90 (120)
..+.|..|+.+..-+ ..|+--|.=|.++|+.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~---------------~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSIS---------------RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTT---------------BCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCc---------------cccccCCCCCCEEChHHhCCe
Confidence 455699999876511 237888999999999987543
No 18
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=24.41 E-value=69 Score=19.89 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=25.0
Q ss_pred EEEeeecCCCCC-CCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412 31 VYQSTKKRASGP-KCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE 89 (120)
Q Consensus 31 v~~y~KK~~~~p-kC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~ 89 (120)
.+-+.++-+... .|..||.+ +-+-|-||=.+|--|.+|
T Consensus 7 ~~sh~r~~G~g~~rC~vcGr~---------------------~g~iRkfGL~~cR~cfRe 45 (56)
T 3iz6_N 7 WNSHPKNYGAGSRVCRVCGNS---------------------HGLIRKYGLMCCRQCFRS 45 (56)
T ss_dssp --CCCCCCCCCCCCCSSCCCS---------------------CCCTTTTSCTTHHHHHHT
T ss_pred ccCCccccCCCcceeecCCCC---------------------cccccccCCcHHHHHHHH
Confidence 334556666654 49999875 234467888889988886
No 19
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.10 E-value=31 Score=24.64 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 39 ASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 39 ~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
+.--.|+|||.+- |. -+|=.||=.+|-.|--
T Consensus 25 p~N~~CaDCg~~~-------P~------------WaS~n~GvfiC~~Csg 55 (134)
T 2iqj_A 25 EDNKFCADCQSKG-------PR------------WASWNIGVFICIRCAG 55 (134)
T ss_dssp GGGGBCTTTCCBS-------CC------------EEETTTTEEECHHHHH
T ss_pred cCCCcCCcCcCCC-------CC------------eEEecCCEEEhHhhhH
Confidence 3344699999763 21 2334689999998853
No 20
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=23.64 E-value=32 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=24.1
Q ss_pred EeeecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHH
Q 033412 33 QSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAV 87 (120)
Q Consensus 33 ~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCV 87 (120)
..+.+.+.-..|+|||.+- |. -+|=.||-.+|..|-
T Consensus 34 ~~~~~~~~n~~c~dc~~~~-------p~------------w~s~~~g~~~c~~cs 69 (301)
T 2b0o_E 34 AEVKSRPGNSQCCDCGAAD-------PT------------WLSTNLGVLTCIQCS 69 (301)
T ss_dssp HHHHTSTTTTBCTTTCCBS-------CC------------EEETTTTEEECHHHH
T ss_pred HHHhcCCCCCcCCCCCCCC-------CC------------eEEeecCeEEcHHHH
Confidence 3345666677799999762 21 223468999999984
No 21
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.54 E-value=21 Score=23.64 Aligned_cols=10 Identities=50% Similarity=1.255 Sum_probs=8.8
Q ss_pred CCCCCCCCCC
Q 033412 43 KCPVTGKRIQ 52 (120)
Q Consensus 43 kC~~cg~~L~ 52 (120)
.||.||.+|+
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 4999999987
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.37 E-value=35 Score=24.97 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=20.9
Q ss_pred cCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHH
Q 033412 37 KRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAV 87 (120)
Q Consensus 37 K~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCV 87 (120)
+.+.-..|+|||.+-+ . =+|=.||=.+|-.|-
T Consensus 25 ~~p~N~~CaDCga~~P-------~------------WaS~n~GvfiC~~Cs 56 (149)
T 2crw_A 25 SVPTNKVCFDCGAKNP-------S------------WASITYGVFLCIDCS 56 (149)
T ss_dssp HSTTTSBCSSSCCBSC-------C------------CEETTTTEECCHHHH
T ss_pred cCcCCCcCCCCcCCCC-------C------------cEEeccCEEEchhcc
Confidence 3445556999997632 1 233467888888885
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.22 E-value=37 Score=23.87 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHHH
Q 033412 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRER 90 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~r 90 (120)
.+.|-.|+.+..=+ +.|+--|.=|+..|++|...+
T Consensus 19 ~~~C~~C~~~Fs~~---------------~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANT---------------ARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSG---------------GGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCccccc---------------cccccCCCCCCeeCHHHhCCC
Confidence 35799998876421 237889999999999996544
No 24
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=22.69 E-value=34 Score=24.65 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=21.5
Q ss_pred ecCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHH
Q 033412 36 KKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAV 87 (120)
Q Consensus 36 KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCV 87 (120)
.+.+.-..|+|||.+- |. =+|=.||=.+|-.|-
T Consensus 31 ~~~p~N~~CaDCga~~-------P~------------WaS~n~GvfiC~~Cs 63 (138)
T 2owa_A 31 RNRPENRTCFDCESRN-------PT------------WLSLSFAVFICLNCS 63 (138)
T ss_dssp HHSGGGGBCTTTCCBS-------CC------------EEETTTTEEECHHHH
T ss_pred HcCcCCCcCCCCcCCC-------CC------------eEEecCCEEEhHhhh
Confidence 3444455699999762 21 234468888998885
No 25
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.64 E-value=18 Score=28.76 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHHHHHHHHHH
Q 033412 41 GPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLV 97 (120)
Q Consensus 41 ~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~rI~rAFL~ 97 (120)
...|..|+.+.. +- ..++-.|.=|+++|..|...++.-.|..
T Consensus 375 ~~~c~~c~~~f~-~~--------------~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~ 416 (434)
T 3mpx_A 375 VMMCMNCGCDFS-LT--------------LRRHHCHACGKIVCRNCSRNKYPLKYLK 416 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCC-Cc--------------chhhhcccCcCEeehhhCCCeeeCCCCC
Confidence 456889987763 11 1368899999999999998877655543
No 26
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.54 E-value=23 Score=23.76 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCccC
Q 033412 43 KCPVTGKRIQGIPH 56 (120)
Q Consensus 43 kC~~cg~~L~GI~~ 56 (120)
-|++||.+|+-.++
T Consensus 33 fCPeCgq~Le~lkA 46 (81)
T 2jrp_A 33 LCPDCRQPLQVLKA 46 (81)
T ss_dssp ECSSSCSCCCEEEE
T ss_pred cCcchhhHHHHHHh
Confidence 69999999987665
No 27
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.54 E-value=48 Score=20.22 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCC
Q 033412 39 ASGPKCPVTGKRIQG 53 (120)
Q Consensus 39 ~~~pkC~~cg~~L~G 53 (120)
...++|+.|+++|.|
T Consensus 13 ~~~~~C~~C~~~I~~ 27 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG 27 (79)
T ss_dssp CCCCCCSSSCCCCCS
T ss_pred CCCCccccCCCCccC
Confidence 456889999999887
No 28
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.48 E-value=50 Score=22.63 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=13.0
Q ss_pred CccccccCCcchHHHHHHH
Q 033412 72 RTVNRAYGGVLSGAAVRER 90 (120)
Q Consensus 72 ktvsRaYGG~lC~kCVr~r 90 (120)
+-+-|.|| ||--|.++.
T Consensus 70 rg~~r~fg--lsR~~fRe~ 86 (100)
T 3bbn_N 70 RANIRDFG--LSGHILREM 86 (100)
T ss_dssp SSBCTTTC--SBTTHHHHH
T ss_pred ceeecccC--cHHHHHHHH
Confidence 46677888 888888874
No 29
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.89 E-value=43 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCc
Q 033412 39 ASGPKCPVTGKRIQGI 54 (120)
Q Consensus 39 ~~~pkC~~cg~~L~GI 54 (120)
++.++|+.|++++.+-
T Consensus 1 g~~~~C~~C~~~I~~~ 16 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDR 16 (114)
T ss_dssp CCCBCBSSSCSCBCSS
T ss_pred CcCCCCcCCCCeeCCc
Confidence 3567788888777653
No 30
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=20.53 E-value=48 Score=21.11 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 033412 86 AVRERIIRAFLVE 98 (120)
Q Consensus 86 CVr~rI~rAFL~E 98 (120)
|||++.+.|||.+
T Consensus 1 ~~r~~KLasFLkD 13 (62)
T 2qfa_B 1 SLRRRKLASFLKD 13 (62)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHH
Confidence 7999999999975
No 31
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=20.47 E-value=1e+02 Score=27.88 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHHHHHHHHHHHH
Q 033412 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRERIIRAFLVEE 99 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~rI~rAFL~EE 99 (120)
.+-+|..||..+.=....+-.......+. =|=.||+-|.-.|...-||.||
T Consensus 266 ~g~kc~lcGE~~~~~~~~~~~~~~~~~~k---------~~E~Lc~~c~~KR~~p~~~~~~ 316 (693)
T 3ung_C 266 KGWKCHVCGENLAIFGDMYDHDNLKSLWL---------DEEPLCPMCLIKRYYPVWIRSK 316 (693)
T ss_dssp -CCBCSSSSSSBCTTTTTSCHHHHHHHBG---------GGCCCCHHHHHHHHHHHHHHHH
T ss_pred CCceeeccCcccccccchhhhhhhhhhcc---------cccccchhHHHHHhhHHHHHhh
Confidence 45579999988552233322211000111 1348999999999999997766
Done!