Query 033412
Match_columns 120
No_of_seqs 101 out of 240
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 22:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3ha1 g.39.1.3 (A:8-42) Leup 76.2 0.52 3.8E-05 25.7 1.4 13 41-53 8-20 (35)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 68.4 1 7.6E-05 24.6 1.4 13 44-56 2-14 (33)
3 d2dara2 g.39.1.3 (A:8-52) PDZ 62.6 1.7 0.00012 25.2 1.6 15 39-53 16-30 (45)
4 d1u5sb1 g.39.1.3 (B:72-102) Pi 53.9 1.4 0.0001 23.8 0.1 14 40-53 4-17 (31)
5 d2dj7a1 g.39.1.3 (A:44-74) Act 47.9 3.3 0.00024 22.2 1.1 11 43-53 1-11 (31)
6 d1dcqa2 g.45.1.1 (A:247-368) P 44.7 3.9 0.00028 26.9 1.3 33 37-88 11-43 (122)
7 d1j2oa1 g.39.1.3 (A:1-30) Rhom 41.6 5.5 0.0004 21.1 1.4 14 39-52 1-14 (30)
8 d2c7na1 g.39.1.15 (A:18-73) Ra 39.8 33 0.0024 20.2 5.0 12 81-92 16-27 (56)
9 d1u5ka2 g.45.1.2 (A:81-237) Re 37.1 5.7 0.00042 26.2 1.2 12 77-88 87-98 (157)
10 d1x4la1 g.39.1.3 (A:8-36) Four 32.7 8.4 0.00061 20.2 1.2 15 44-58 1-15 (29)
11 d1bgfa_ a.90.1.1 (A:) Transcri 24.7 21 0.0015 23.7 2.4 16 90-105 104-119 (124)
12 d1joca1 g.50.1.1 (A:1348-1411) 24.3 17 0.0013 20.9 1.7 35 40-89 7-41 (64)
13 d1x68a1 g.39.1.3 (A:8-36) Four 23.6 17 0.0012 18.9 1.3 15 44-58 1-15 (29)
14 d1y02a2 g.50.1.1 (A:20-70) Rif 23.6 19 0.0014 20.2 1.7 32 42-88 1-32 (51)
15 d1rutx1 g.39.1.3 (X:19-48) LIM 22.7 16 0.0012 19.1 1.2 12 41-52 2-13 (30)
No 1
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.23 E-value=0.52 Score=25.73 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCC
Q 033412 41 GPKCPVTGKRIQG 53 (120)
Q Consensus 41 ~pkC~~cg~~L~G 53 (120)
+|+|+.|+.+|-|
T Consensus 8 apkC~~C~~~I~g 20 (35)
T d1x3ha1 8 SPKCGGCNRPVLE 20 (35)
T ss_dssp SCBCTTTCCBCCS
T ss_pred ChhhhhcCCcccc
Confidence 6899999999987
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.39 E-value=1 Score=24.59 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=11.9
Q ss_pred CCCCCCCCCCccC
Q 033412 44 CPVTGKRIQGIPH 56 (120)
Q Consensus 44 C~~cg~~L~GI~~ 56 (120)
|..|+..|.|||=
T Consensus 2 CvvC~~~LDGvPF 14 (33)
T d2dloa2 2 CVVCHRGLDGIPF 14 (33)
T ss_dssp CSSSCCBCTTSCE
T ss_pred eeEcCcccCCCcE
Confidence 8899999999983
No 3
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.56 E-value=1.7 Score=25.17 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCC
Q 033412 39 ASGPKCPVTGKRIQG 53 (120)
Q Consensus 39 ~~~pkC~~cg~~L~G 53 (120)
...|.|+.|++++.|
T Consensus 16 ~r~P~C~~C~~pI~g 30 (45)
T d2dara2 16 KRTPMCAHCNQVIRG 30 (45)
T ss_dssp TCCCBBSSSCCBCCS
T ss_pred CCCeeccccCCcccC
Confidence 456889999999987
No 4
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.95 E-value=1.4 Score=23.79 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCC
Q 033412 40 SGPKCPVTGKRIQG 53 (120)
Q Consensus 40 ~~pkC~~cg~~L~G 53 (120)
..|.|+.|.+|+-|
T Consensus 4 g~p~C~~C~~PI~~ 17 (31)
T d1u5sb1 4 GVPICGACRRPIEG 17 (31)
T ss_dssp CCCEETTTTEECCS
T ss_pred CCcchhhcCCchhh
Confidence 46889999999987
No 5
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.92 E-value=3.3 Score=22.22 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=9.9
Q ss_pred CCCCCCCCCCC
Q 033412 43 KCPVTGKRIQG 53 (120)
Q Consensus 43 kC~~cg~~L~G 53 (120)
+|-.|+..|+|
T Consensus 1 kC~~C~~vL~g 11 (31)
T d2dj7a1 1 KCQTCSVILTG 11 (31)
T ss_dssp BCSSSCCBCSS
T ss_pred CccccCccccc
Confidence 59999999997
No 6
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.72 E-value=3.9 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=22.5
Q ss_pred cCCCCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 37 KRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 37 K~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
+.+.--.|+|||.+= | .-+|=.||=.+|..|--
T Consensus 11 ~~p~N~~CaDC~~~~-------p------------~w~s~n~GvfvC~~Csg 43 (122)
T d1dcqa2 11 RMTGNDVCCDCGAPD-------P------------TWLSTNLGILTCIECSG 43 (122)
T ss_dssp HSTTTTBCTTTCCBS-------C------------CEEETTTTEEECHHHHH
T ss_pred hCCCCCccCCCCCCC-------C------------CeEEecCCEEEchhhhH
Confidence 445555799998542 1 13455799999999954
No 7
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.55 E-value=5.5 Score=21.10 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 033412 39 ASGPKCPVTGKRIQ 52 (120)
Q Consensus 39 ~~~pkC~~cg~~L~ 52 (120)
++.+.|+.|+.++.
T Consensus 1 G~~~~CaGC~~~I~ 14 (30)
T d1j2oa1 1 GSLLTCGGCQQNIG 14 (30)
T ss_dssp CCCBCBSSSCSCBC
T ss_pred CCCcccCCCCCcch
Confidence 45678999998864
No 8
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.78 E-value=33 Score=20.18 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=9.8
Q ss_pred cchHHHHHHHHH
Q 033412 81 VLSGAAVRERII 92 (120)
Q Consensus 81 ~lC~kCVr~rI~ 92 (120)
-+|.+|-+|.+.
T Consensus 16 g~CSkCyr~~~~ 27 (56)
T d2c7na1 16 GFCSKCWREEYH 27 (56)
T ss_dssp TCCHHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 489999999763
No 9
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.05 E-value=5.7 Score=26.18 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=9.5
Q ss_pred ccCCcchHHHHH
Q 033412 77 AYGGVLSGAAVR 88 (120)
Q Consensus 77 aYGG~lC~kCVr 88 (120)
.-||.+|+.|-.
T Consensus 87 ~~Gg~~C~~c~~ 98 (157)
T d1u5ka2 87 LGGQLLCSKCAA 98 (157)
T ss_dssp TTSSEECTTTCS
T ss_pred cCCeeECCCCCC
Confidence 349999999943
No 10
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.69 E-value=8.4 Score=20.19 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.3
Q ss_pred CCCCCCCCCCccCCC
Q 033412 44 CPVTGKRIQGIPHLR 58 (120)
Q Consensus 44 C~~cg~~L~GI~~~R 58 (120)
|+.|.+||-|+--.+
T Consensus 1 C~~C~kPItg~gg~k 15 (29)
T d1x4la1 1 CAGCTNPISGLGGTK 15 (29)
T ss_dssp BTTTTBCCCCSSSCS
T ss_pred CCccCCcccccCCce
Confidence 889999999987543
No 11
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.68 E-value=21 Score=23.72 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033412 90 RIIRAFLVEEQKIVKK 105 (120)
Q Consensus 90 rI~rAFL~EEqkivk~ 105 (120)
+||+-.|.||.+||..
T Consensus 104 ~iI~~cL~~E~riv~~ 119 (124)
T d1bgfa_ 104 VVISNCLREERRILAA 119 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6999999999999853
No 12
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.35 E-value=17 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHHH
Q 033412 40 SGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVRE 89 (120)
Q Consensus 40 ~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr~ 89 (120)
..+.|..|+.++.=+ ..|+--|.=|.++|+.|...
T Consensus 7 ~~~~C~~C~~~F~~~---------------~rrHHCR~CG~v~C~~Cs~~ 41 (64)
T d1joca1 7 EVQNCMACGKGFSVT---------------VRRHHCRQCGNIFCAECSAK 41 (64)
T ss_dssp GCCBCTTTCCBCCSS---------------SCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCcCCcccCC---------------ccccchhhhCCeecccccCC
Confidence 455699998877521 13688899999999999654
No 13
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.58 E-value=17 Score=18.95 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.1
Q ss_pred CCCCCCCCCCccCCC
Q 033412 44 CPVTGKRIQGIPHLR 58 (120)
Q Consensus 44 C~~cg~~L~GI~~~R 58 (120)
|..|.+||-|+.-.+
T Consensus 1 C~~C~kPItg~gG~k 15 (29)
T d1x68a1 1 CVACSKPISGLTGAK 15 (29)
T ss_dssp CTTTCCCCCTTTTCC
T ss_pred CccccccccccCCce
Confidence 788999999987543
No 14
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.58 E-value=19 Score=20.19 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCccCCCchhhhcccCCCCCCccccccCCcchHHHHH
Q 033412 42 PKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGAAVR 88 (120)
Q Consensus 42 pkC~~cg~~L~GI~~~Rp~~~~~~rlsk~~ktvsRaYGG~lC~kCVr 88 (120)
|-|-.|+.+..=+ ..|+--|.=|+++|.+|..
T Consensus 1 p~C~~C~~~F~~~---------------~rkhhCr~CG~~fC~~Cs~ 32 (51)
T d1y02a2 1 PSCKSCGAHFANT---------------ARKQTCLDCKKNFCMTCSS 32 (51)
T ss_dssp CCCTTTCCCCSSG---------------GGCEECTTTCCEECGGGEE
T ss_pred CCccccCCcccCC---------------ccCcccccCCcccCccccC
Confidence 5688888776411 1368889999999999964
No 15
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.66 E-value=16 Score=19.06 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q 033412 41 GPKCPVTGKRIQ 52 (120)
Q Consensus 41 ~pkC~~cg~~L~ 52 (120)
...|+.||.+|.
T Consensus 2 ~~~CaGC~~~I~ 13 (30)
T d1rutx1 2 WKRCAGCGGKIA 13 (30)
T ss_dssp CCBBTTTCCBCC
T ss_pred ccccCCCCCccc
Confidence 346999998864
Done!