Query 033413
Match_columns 119
No_of_seqs 150 out of 1067
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4E-51 8.6E-56 272.1 13.0 119 1-119 30-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2E-49 4.2E-54 268.6 13.7 118 1-118 35-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.8E-46 3.9E-51 255.8 14.8 119 1-119 31-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 9.4E-46 2E-50 251.1 14.5 118 1-118 30-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.7E-45 3.6E-50 239.7 12.3 117 1-117 33-149 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.7E-44 1.5E-48 238.2 12.9 116 1-116 35-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 6.7E-44 1.5E-48 235.2 12.4 119 1-119 38-158 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 3.1E-42 6.8E-47 236.2 11.2 117 3-119 37-154 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.3E-40 2.8E-45 224.0 12.8 113 1-113 27-140 (140)
10 smart00212 UBCc Ubiquitin-conj 100.0 6.2E-40 1.3E-44 221.9 14.5 117 1-117 28-145 (145)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.5E-39 5.4E-44 218.1 12.9 113 1-113 28-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 4E-38 8.6E-43 205.5 11.6 117 1-117 34-163 (165)
13 KOG0416 Ubiquitin-protein liga 100.0 1.5E-37 3.2E-42 210.3 10.1 118 1-118 29-148 (189)
14 KOG0421 Ubiquitin-protein liga 100.0 2.8E-37 6E-42 204.1 9.7 115 1-116 58-172 (175)
15 KOG0422 Ubiquitin-protein liga 100.0 6.7E-36 1.5E-40 196.4 13.0 117 1-118 32-149 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 3.2E-34 7E-39 194.3 10.4 115 3-118 61-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2.2E-32 4.7E-37 185.9 6.6 115 5-119 43-157 (223)
18 KOG0427 Ubiquitin conjugating 99.9 4E-25 8.6E-30 144.4 8.3 84 1-84 43-127 (161)
19 KOG0429 Ubiquitin-conjugating 99.9 2.2E-23 4.7E-28 146.7 11.1 113 2-115 49-167 (258)
20 KOG0894 Ubiquitin-protein liga 99.9 7.2E-22 1.6E-26 138.6 10.3 84 1-86 34-120 (244)
21 KOG0428 Non-canonical ubiquiti 99.7 1.3E-17 2.8E-22 119.4 8.3 81 1-83 39-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 3.3E-16 7.3E-21 129.5 6.2 82 5-86 884-974 (1101)
23 KOG0896 Ubiquitin-conjugating 99.6 3.1E-15 6.8E-20 98.3 6.8 83 1-83 38-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.4 1.2E-12 2.6E-17 108.9 8.5 84 1-84 311-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 99.0 2.6E-09 5.6E-14 71.3 7.8 67 17-83 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 2.1E-08 4.6E-13 64.5 5.7 90 21-111 13-108 (122)
27 PF05743 UEV: UEV domain; Int 98.6 7.3E-08 1.6E-12 63.4 5.3 68 15-83 42-117 (121)
28 KOG2391 Vacuolar sorting prote 97.9 5.6E-05 1.2E-09 57.2 6.7 72 13-85 60-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.7 0.018 3.8E-07 38.0 7.8 70 11-82 34-120 (122)
30 PF08694 UFC1: Ubiquitin-fold 95.5 0.02 4.3E-07 38.6 3.6 65 10-74 56-135 (161)
31 PF14457 Prok-E2_A: Prokaryoti 95.4 0.03 6.5E-07 38.7 4.3 61 23-83 57-126 (162)
32 PF05773 RWD: RWD domain; Int 95.3 0.043 9.2E-07 34.5 4.5 30 14-43 44-73 (113)
33 smart00591 RWD domain in RING 94.2 0.064 1.4E-06 33.5 3.3 26 18-43 40-65 (107)
34 PF06113 BRE: Brain and reprod 88.6 1.8 3.9E-05 33.3 6.0 59 15-79 61-122 (333)
35 KOG3357 Uncharacterized conser 87.8 1.4 3E-05 29.4 4.4 65 9-73 58-137 (167)
36 PF14460 Prok-E2_D: Prokaryoti 87.4 0.98 2.1E-05 31.4 3.8 44 41-87 89-135 (175)
37 TIGR03737 PRTRC_B PRTRC system 83.3 2.3 5E-05 31.0 4.1 41 42-86 131-175 (228)
38 KOG4018 Uncharacterized conser 78.5 2.3 5E-05 30.6 2.7 21 20-40 50-70 (215)
39 PF03366 YEATS: YEATS family; 71.6 19 0.0004 22.0 5.2 42 1-44 1-42 (84)
40 PF09765 WD-3: WD-repeat regio 65.6 3.8 8.2E-05 30.9 1.5 50 19-82 137-187 (291)
41 KOG0177 20S proteasome, regula 60.0 5.2 0.00011 28.4 1.2 63 21-83 98-166 (200)
42 cd00421 intradiol_dioxygenase 59.1 16 0.00035 24.4 3.5 25 17-41 64-89 (146)
43 KOG0309 Conserved WD40 repeat- 59.0 23 0.00051 30.5 5.0 37 6-43 453-491 (1081)
44 cd03457 intradiol_dioxygenase_ 55.6 19 0.00042 25.3 3.5 25 17-41 85-109 (188)
45 PF06113 BRE: Brain and reprod 54.9 18 0.00038 28.0 3.4 24 20-43 307-330 (333)
46 KOG2851 Eukaryotic-type DNA pr 54.0 30 0.00066 27.1 4.5 33 48-80 331-369 (412)
47 cd07981 TAF12 TATA Binding Pro 52.4 46 0.001 19.5 4.6 42 76-117 6-47 (72)
48 cd03459 3,4-PCD Protocatechuat 51.1 26 0.00057 23.9 3.5 25 17-41 71-100 (158)
49 PF12018 DUF3508: Domain of un 45.7 35 0.00075 25.5 3.7 31 87-117 236-266 (281)
50 KOG4445 Uncharacterized conser 44.6 31 0.00067 26.5 3.3 25 19-43 45-69 (368)
51 cd05845 Ig2_L1-CAM_like Second 43.4 60 0.0013 20.2 4.0 26 16-43 16-41 (95)
52 PF08369 PCP_red: Proto-chloro 40.6 58 0.0012 17.4 3.2 26 92-117 3-28 (45)
53 KOG1047 Bifunctional leukotrie 40.4 30 0.00065 28.7 2.8 29 14-43 248-279 (613)
54 PF11333 DUF3135: Protein of u 40.1 68 0.0015 19.6 3.8 24 93-116 8-31 (83)
55 PF09943 DUF2175: Uncharacteri 39.5 31 0.00068 22.0 2.3 20 3-24 2-21 (101)
56 PF01175 Urocanase: Urocanase; 36.2 65 0.0014 26.5 4.1 26 92-117 272-297 (546)
57 PF14455 Metal_CEHH: Predicted 36.1 93 0.002 21.5 4.3 22 21-43 55-76 (177)
58 TIGR02423 protocat_alph protoc 35.9 57 0.0012 23.1 3.4 25 17-41 95-124 (193)
59 KOG4064 Cysteine dioxygenase C 35.6 77 0.0017 21.9 3.8 49 64-116 7-60 (196)
60 PRK05414 urocanate hydratase; 35.3 45 0.00097 27.4 3.1 26 92-117 282-307 (556)
61 PF02563 Poly_export: Polysacc 35.3 66 0.0014 19.0 3.2 36 48-83 34-69 (82)
62 KOG0662 Cyclin-dependent kinas 34.4 44 0.00095 24.2 2.6 54 33-86 167-224 (292)
63 TIGR01228 hutU urocanate hydra 34.3 69 0.0015 26.3 3.9 26 92-117 273-298 (545)
64 PF12652 CotJB: CotJB protein; 33.4 1.1E+02 0.0024 18.4 3.9 30 88-117 25-54 (78)
65 cd03463 3,4-PCD_alpha Protocat 33.3 67 0.0015 22.6 3.4 24 18-41 92-120 (185)
66 cd01145 TroA_c Periplasmic bin 32.7 92 0.002 21.7 4.1 47 64-116 111-157 (203)
67 PF03847 TFIID_20kDa: Transcri 31.5 1.1E+02 0.0024 17.8 4.7 42 76-117 4-45 (68)
68 COG3866 PelB Pectate lyase [Ca 30.5 99 0.0021 23.9 4.1 40 3-42 198-240 (345)
69 KOG3696 Aspartyl beta-hydroxyl 28.7 44 0.00094 25.7 1.9 25 29-53 303-327 (334)
70 PF09280 XPC-binding: XPC-bind 28.2 1.1E+02 0.0023 17.4 3.1 23 89-111 33-55 (59)
71 cd01020 TroA_b Metal binding p 27.1 1.5E+02 0.0032 21.6 4.5 47 64-116 98-144 (264)
72 PF13950 Epimerase_Csub: UDP-g 27.1 51 0.0011 18.7 1.6 18 63-80 37-54 (62)
73 TIGR02439 catechol_proteo cate 27.0 94 0.002 23.5 3.4 25 17-41 179-221 (285)
74 cd01018 ZntC Metal binding pro 26.7 1.4E+02 0.0029 21.8 4.2 47 64-116 115-161 (266)
75 cd01019 ZnuA Zinc binding prot 25.6 1.3E+02 0.0028 22.2 4.0 48 64-117 124-171 (286)
76 COG4847 Uncharacterized protei 25.4 82 0.0018 19.9 2.4 26 91-116 75-100 (103)
77 COG2847 Copper(I)-binding prot 24.9 1.6E+02 0.0035 20.1 4.0 27 4-30 105-131 (151)
78 PF11745 DUF3304: Protein of u 24.4 32 0.00069 22.2 0.5 20 51-70 49-68 (118)
79 PF09892 DUF2119: Uncharacteri 24.0 2.7E+02 0.0059 19.8 6.1 78 34-116 105-190 (193)
80 cd03461 1,2-HQD Hydroxyquinol 23.9 1.2E+02 0.0025 22.9 3.4 16 17-32 171-186 (277)
81 COG1225 Bcp Peroxiredoxin [Pos 23.8 1.1E+02 0.0023 21.0 3.0 31 48-80 125-155 (157)
82 PF00779 BTK: BTK motif; Inte 23.7 30 0.00064 17.2 0.2 15 44-58 2-17 (32)
83 PF01774 UreD: UreD urease acc 23.4 89 0.0019 22.1 2.7 26 5-30 1-26 (209)
84 COG2819 Predicted hydrolase of 23.0 1.4E+02 0.003 22.3 3.7 30 13-42 15-46 (264)
85 KOG3203 Mitochondrial/chloropl 22.9 47 0.001 22.9 1.1 15 42-57 49-63 (165)
86 PF05678 VQ: VQ motif; InterP 22.6 41 0.0009 16.6 0.6 20 98-117 8-27 (31)
87 cd03460 1,2-CTD Catechol 1,2 d 22.5 1.3E+02 0.0028 22.7 3.4 16 17-32 175-190 (282)
88 cd01016 TroA Metal binding pro 21.5 1.9E+02 0.0042 21.2 4.2 47 64-116 104-150 (276)
89 smart00803 TAF TATA box bindin 21.0 1.8E+02 0.0039 16.6 4.9 29 89-117 19-47 (65)
90 TIGR02438 catachol_actin catec 20.4 1.5E+02 0.0033 22.3 3.5 16 17-32 183-198 (281)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-51 Score=272.06 Aligned_cols=119 Identities=81% Similarity=1.462 Sum_probs=117.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||.|||||||+|.+.|.||++||++||+|+|.|+||||||+.+|+||+|+|+++|+|+.+|..||.+|+++
T Consensus 30 l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sL 109 (148)
T KOG0417|consen 30 LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSL 109 (148)
T ss_pred eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+||+++|++++++++|+.|+++|.++||+|++|||++
T Consensus 110 L~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 110 LSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred hcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-49 Score=268.62 Aligned_cols=118 Identities=58% Similarity=1.208 Sum_probs=116.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++||||||+|++.|.||++||++||+|+|.++|||||||++|+||+++|.+.|+|++++++||.+|+++
T Consensus 35 l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~sl 114 (153)
T COG5078 35 LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSL 114 (153)
T ss_pred ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+||.++|+|.||+++|++|+++|.++||+++++||.
T Consensus 115 L~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 115 LLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.8e-46 Score=255.79 Aligned_cols=119 Identities=50% Similarity=0.959 Sum_probs=116.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+++|.||+++|.++|+|++|+.+||.+|+++
T Consensus 31 ~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~l 110 (152)
T PTZ00390 31 YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL 110 (152)
T ss_pred ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+||++|++|+++|.++|++|+++||++
T Consensus 111 l~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 111 LSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred HhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999964
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=9.4e-46 Score=251.09 Aligned_cols=118 Identities=75% Similarity=1.388 Sum_probs=115.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+.+|.||+++|.++|+|++|+++||.+|+++
T Consensus 30 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~l 109 (147)
T PLN00172 30 LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSL 109 (147)
T ss_pred hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|+++|++|+++||.
T Consensus 110 l~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 110 LTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred HhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999983
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=239.74 Aligned_cols=117 Identities=43% Similarity=0.919 Sum_probs=114.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|+.|+++|+||.+|||+||+|++.|.|+++||.+||.|+|++.+||||||++|.+|+|+|...|+|++++..||.+||+|
T Consensus 33 iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQsl 112 (152)
T KOG0419|consen 33 IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSL 112 (152)
T ss_pred eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
|.+|++++|+|.|||++|++|+.+|.+++|+.++|..
T Consensus 113 L~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 113 LNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred hcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988754
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-44 Score=238.22 Aligned_cols=116 Identities=37% Similarity=0.892 Sum_probs=112.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-------------cccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-------------~~W~p~ 67 (119)
+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+.+||||||++|+||+++|. +.|+|.
T Consensus 35 if~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv 114 (171)
T KOG0425|consen 35 IFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPV 114 (171)
T ss_pred eeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999993 579999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
.|+++||++|.+||.+||.++|+|.+|++.|++++++|+++|+++|.+.
T Consensus 115 ~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 115 QTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred cchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-44 Score=235.21 Aligned_cols=119 Identities=40% Similarity=0.876 Sum_probs=115.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccc--cCCcccHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSIC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~--W~p~~~i~~il~~i~ 78 (119)
+++|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||++|.||+++|.++ |+|++||.+||..||
T Consensus 38 l~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIq 117 (158)
T KOG0424|consen 38 LMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQ 117 (158)
T ss_pred eEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999865 999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+||.+||..+|+|.||..+|++|+..|.++||.++++||.+
T Consensus 118 dLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 118 DLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred HHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999963
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-42 Score=236.25 Aligned_cols=117 Identities=49% Similarity=0.946 Sum_probs=114.2
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHHhh
Q 033413 3 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ll 81 (119)
+-++.|.||+|||||||.|.+.|++|++||++||+|+|.|.||||||.+ +|.||+|++.+.|.+++|++.+|++||++|
T Consensus 37 ~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL 116 (200)
T KOG0418|consen 37 EIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALL 116 (200)
T ss_pred hceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 82 TDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 82 ~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
..|++.+|...+.+++|.+|++.|.+.||.|+..||+|
T Consensus 117 ~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 117 CAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred cCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999986
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.3e-40 Score=224.02 Aligned_cols=113 Identities=59% Similarity=1.209 Sum_probs=104.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCccc-ccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-QWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~-~W~p~~~i~~il~~i~~ 79 (119)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.||+++|.. .|+|++++.+||.+|++
T Consensus 27 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ 106 (140)
T PF00179_consen 27 LFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQS 106 (140)
T ss_dssp TTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHH
T ss_pred hheEEEEEeccCccceecccccccccccccccccccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999985 59999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHH
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWT 113 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 113 (119)
+|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 107 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 107 LLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp HHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999984
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=6.2e-40 Score=221.93 Aligned_cols=117 Identities=61% Similarity=1.220 Sum_probs=114.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-cccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-~~W~p~~~i~~il~~i~~ 79 (119)
+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|.||++.+. ++|+|++++.+||.+|++
T Consensus 28 ~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~ 107 (145)
T smart00212 28 LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQS 107 (145)
T ss_pred hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
+|.+|+.++++|.||+++|++|++.|+++|+++++|++
T Consensus 108 ~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 108 LLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999985
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.5e-39 Score=218.06 Aligned_cols=113 Identities=58% Similarity=1.175 Sum_probs=109.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccc-cCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~-W~p~~~i~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|++.|.||++||.+||.|+|.+.++||||+.+|.||++++... |+|++++.+||.+|++
T Consensus 28 ~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~ 107 (141)
T cd00195 28 LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQS 107 (141)
T ss_pred hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999877 9999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHH
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWT 113 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 113 (119)
+|.+|+.++++|.+|+.+|++|++.|+++|++|+
T Consensus 108 ~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 108 LLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred HHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-38 Score=205.52 Aligned_cols=117 Identities=39% Similarity=0.880 Sum_probs=112.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-------------cccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-------------~~W~p~ 67 (119)
+++|.|.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||+++|+||+++|. +.|+|.
T Consensus 34 fF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPV 113 (165)
T KOG0426|consen 34 FFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPV 113 (165)
T ss_pred eeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChH
Confidence 4799999999999999999999999999999999999999999999999999999999982 579999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
++++.||.++.+||.+||-++.+|.+|+.++++||++|.+.|+..+.|.-
T Consensus 114 QSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 114 QSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998854
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=210.27 Aligned_cols=118 Identities=42% Similarity=0.886 Sum_probs=113.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHH-HH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-IC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~-i~ 78 (119)
|.+.++.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||++ +|.||++.+..-|+|.+.+..|+.. |-
T Consensus 29 m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLP 108 (189)
T KOG0416|consen 29 MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLP 108 (189)
T ss_pred ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhH
Confidence 568899999999999999999999999999999999999999999999996 9999999999999999999999876 57
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
.||..||+.+|+|.|||.+|.++++.|++++|++++|||+
T Consensus 109 QLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 109 QLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred HHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999996
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=204.08 Aligned_cols=115 Identities=41% Similarity=0.865 Sum_probs=111.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|+.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|.++.||||||-.|.||+|+|.+.|+..++++.||.+||++
T Consensus 58 lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSL 137 (175)
T KOG0421|consen 58 LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSL 137 (175)
T ss_pred eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
|-+||.++|+|..||.++. |.++|++.+.++-++.
T Consensus 138 LGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 138 LGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred hCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999998 9999999998887654
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-36 Score=196.39 Aligned_cols=117 Identities=39% Similarity=0.926 Sum_probs=113.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-cccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-~~W~p~~~i~~il~~i~~ 79 (119)
++.|++.|. |.+-||..|.|+++|.||.+||+.||+|.|.|.|||||||+.|.||+.++. ++|.|++++.+||+.|.+
T Consensus 32 ll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~ 110 (153)
T KOG0422|consen 32 LLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIA 110 (153)
T ss_pred ceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHH
Confidence 578999998 789999999999999999999999999999999999999999999999885 899999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
++.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus 111 liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 111 LINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred HhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=194.31 Aligned_cols=115 Identities=37% Similarity=0.774 Sum_probs=110.3
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHhhc
Q 033413 3 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~ 82 (119)
+.+.+|. |.++.|+||.|.|.+.+|+.||+.||+|.++|.+||||||.+|.||+++|.++|+|+.+|.+|+-.|+.+|.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~ 139 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFL 139 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhc
Confidence 4677887 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 83 DPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 83 ~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+|++++|+|.|||..+++|++.|.++||.....++-
T Consensus 140 epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 140 EPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999998877653
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-32 Score=185.88 Aligned_cols=115 Identities=43% Similarity=0.793 Sum_probs=111.9
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHhhcCC
Q 033413 5 QATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 84 (119)
Q Consensus 5 ~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~p 84 (119)
.+.|.||.||||++|+|+..+.+..+||.+||+-+|+|.||||||-.+|+||.+.|..+|+|+.+|..||..|+++|..|
T Consensus 43 qa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~P 122 (223)
T KOG0423|consen 43 QADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEP 122 (223)
T ss_pred HhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 85 NPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 85 ~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
++++.+|.||.++..++.+.|.++||-+++-||++
T Consensus 123 nPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 123 NPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999863
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4e-25 Score=144.39 Aligned_cols=84 Identities=40% Similarity=0.860 Sum_probs=80.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccc-ccccccCCCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i-~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|.+|.+.+.|.+||.|+|..|.+.+.||+.||++.|.|.|..++ .||+||+||.||+++|.++|+|++++.+|.++|.+
T Consensus 43 lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlS 122 (161)
T KOG0427|consen 43 LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILS 122 (161)
T ss_pred hheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999764 79999999999999999999999999999999999
Q ss_pred hhcCC
Q 033413 80 LLTDP 84 (119)
Q Consensus 80 ll~~p 84 (119)
||++-
T Consensus 123 MLSSs 127 (161)
T KOG0427|consen 123 MLSSS 127 (161)
T ss_pred HHccC
Confidence 99964
No 19
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=146.69 Aligned_cols=113 Identities=29% Similarity=0.538 Sum_probs=103.6
Q ss_pred eEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEccccccccccC-CCceeccCcccccCCcc-cHHHHHHHH
Q 033413 2 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF--KPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPAL-TISKVLLSI 77 (119)
Q Consensus 2 ~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~--~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~-~i~~il~~i 77 (119)
+.|-++|++ +.+.|.||+|+|.|.+|++||. +-|+|.|.+.++||+|.+ ++.+|+......|+..- +|+++|..|
T Consensus 49 l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~yl 127 (258)
T KOG0429|consen 49 LLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYL 127 (258)
T ss_pred ceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHH
Confidence 579999996 5678999999999999999995 689999999999999996 99999998878899876 699999999
Q ss_pred HHhhcCCCCCCC--CcHHHHHHHHHCHHHHHHHHHHHHHH
Q 033413 78 CSLLTDPNPDDP--LVPEIAHMYKTDRNKYETTARSWTQK 115 (119)
Q Consensus 78 ~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~~ 115 (119)
|.++.+|+.+.+ .|+||+.+|+++++.|.++|+++++.
T Consensus 128 qriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 128 QRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred HHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999987654 59999999999999999999999974
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.2e-22 Score=138.60 Aligned_cols=84 Identities=35% Similarity=0.875 Sum_probs=76.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCc---ccccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l---~~~W~p~~~i~~il~~i 77 (119)
|++||.+|.||++|||+||.|+.+|.||++||++||.|+..|+ +..+-.+-++|+++- .+.|+|++++..||..|
T Consensus 34 ILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktntRLCLSiSDfHPdsWNP~WsVStILtGL 111 (244)
T KOG0894|consen 34 ILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGL 111 (244)
T ss_pred eeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecCceEEEeccccCcCcCCCcccHHHHHHHH
Confidence 5899999999999999999999999999999999999999998 555556789999776 48999999999999999
Q ss_pred HHhhcCCCC
Q 033413 78 CSLLTDPNP 86 (119)
Q Consensus 78 ~~ll~~p~~ 86 (119)
.++|.+..+
T Consensus 112 lSFM~e~~p 120 (244)
T KOG0894|consen 112 LSFMTEDSP 120 (244)
T ss_pred HHHHhcCCC
Confidence 999987544
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=119.44 Aligned_cols=81 Identities=37% Similarity=0.842 Sum_probs=73.7
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc---cccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~---~~W~p~~~i~~il~~i 77 (119)
|++|+.+|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+.-+-+||+++-+ +.|.|+++|+..|..|
T Consensus 39 lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAl 116 (314)
T KOG0428|consen 39 LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVNKKICLSISGYHPETWQPSWSIRTALLAL 116 (314)
T ss_pred eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeCceEEEEecCCCccccCcchhHHHHHHHH
Confidence 6899999999999999999999999999999999999999988 5566667889998874 7899999999999999
Q ss_pred HHhhcC
Q 033413 78 CSLLTD 83 (119)
Q Consensus 78 ~~ll~~ 83 (119)
..+|-.
T Consensus 117 IgFmPt 122 (314)
T KOG0428|consen 117 IGFMPT 122 (314)
T ss_pred HccccC
Confidence 998864
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.3e-16 Score=129.55 Aligned_cols=82 Identities=38% Similarity=0.867 Sum_probs=74.5
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccc--cccccccCCCceeccCcc-------cccCCcccHHHHHH
Q 033413 5 QATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILK-------EQWSPALTISKVLL 75 (119)
Q Consensus 5 ~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~--i~Hpnv~~~G~vc~~~l~-------~~W~p~~~i~~il~ 75 (119)
.++|.||.||||.+|+|.|.+.||++||.+||.+...+. .++||.|++|+||+++|. +.|+|+.++.++|.
T Consensus 884 ~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~ 963 (1101)
T KOG0895|consen 884 RAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLV 963 (1101)
T ss_pred HHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHH
Confidence 467899999999999999999999999999999999864 679999999999999994 67999999999999
Q ss_pred HHHHhhcCCCC
Q 033413 76 SICSLLTDPNP 86 (119)
Q Consensus 76 ~i~~ll~~p~~ 86 (119)
+||.|+...++
T Consensus 964 s~q~l~l~~~p 974 (1101)
T KOG0895|consen 964 SIQGLVLNEEP 974 (1101)
T ss_pred Hhhhhhccccc
Confidence 99999886443
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.1e-15 Score=98.25 Aligned_cols=83 Identities=30% Similarity=0.583 Sum_probs=74.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCc--ccccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDIL--KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l--~~~W~p~~~i~~il~~i 77 (119)
|.+|.+.|.||+.|+||+.+|+++|.+..+||..||+++|.+++.-..|+. +|.|.-..+ -.+|...+++..+|.++
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 568999999999999999999999999999999999999999999999985 788876433 28999999999999999
Q ss_pred HHhhcC
Q 033413 78 CSLLTD 83 (119)
Q Consensus 78 ~~ll~~ 83 (119)
+.+|..
T Consensus 118 r~~m~~ 123 (138)
T KOG0896|consen 118 RKEMMS 123 (138)
T ss_pred hHHHHH
Confidence 976654
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=108.88 Aligned_cols=84 Identities=40% Similarity=0.816 Sum_probs=76.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccc---cccccccCCCceeccCcc-------cccCCc-cc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK---VFHPNINSNGSICLDILK-------EQWSPA-LT 69 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~---i~Hpnv~~~G~vc~~~l~-------~~W~p~-~~ 69 (119)
|...+++|.||.||||++|+|.|.|.||..||..||.+.+.+. .+.||.|.+|+||+++|. +.|+|. .+
T Consensus 311 Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~s 390 (1101)
T KOG0895|consen 311 MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSS 390 (1101)
T ss_pred cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccc
Confidence 4566899999999999999999999999999999999999876 679999999999999883 679998 78
Q ss_pred HHHHHHHHHHhhcCC
Q 033413 70 ISKVLLSICSLLTDP 84 (119)
Q Consensus 70 i~~il~~i~~ll~~p 84 (119)
|.++|.+||.++...
T Consensus 391 l~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 391 LLQVLESIQGLILNE 405 (1101)
T ss_pred hhhhhhhhhhhhccc
Confidence 999999999999865
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=99.00 E-value=2.6e-09 Score=71.34 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=61.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEcccc---ccccccCCCceec---cCcccccCCcccHHHHHHHHHHhhcC
Q 033413 17 AGGVFLVTIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP~~pP~i~f~~~i---~Hpnv~~~G~vc~---~~l~~~W~p~~~i~~il~~i~~ll~~ 83 (119)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +..-+.|+|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6799999999999 77779999999999999999999984
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.1e-08 Score=64.47 Aligned_cols=90 Identities=20% Similarity=0.469 Sum_probs=65.8
Q ss_pred EEEEEEcCCCCCCCCCeeEEccccc-cccccCCCceeccCcc-cccCCcccHHHHHHHHHHhhcCCCC--CCCCcHHHHH
Q 033413 21 FLVTIHFPPDYPFKPPKVAFRTKVF-HPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNP--DDPLVPEIAH 96 (119)
Q Consensus 21 f~~~l~fp~~yP~~pP~i~f~~~i~-Hpnv~~~G~vc~~~l~-~~W~p~~~i~~il~~i~~ll~~p~~--~~~~n~~a~~ 96 (119)
.-+.+.|+++||+.||.+|-..++- ..-|-.+|.||+.++. +.|+.+++++.++++|..++..... ..+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567789999999999998765532 2344478999999995 7899999999999999999998754 355554433
Q ss_pred HHH--HCHHHHHHHHHH
Q 033413 97 MYK--TDRNKYETTARS 111 (119)
Q Consensus 97 ~~~--~~~~~f~~~~~~ 111 (119)
+|. .--+.|+..++.
T Consensus 92 ~~s~~qa~~sfksLv~~ 108 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQI 108 (122)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 443 234455555554
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.63 E-value=7.3e-08 Score=63.44 Aligned_cols=68 Identities=25% Similarity=0.659 Sum_probs=49.5
Q ss_pred CCCCcEEE--EEEEcCCCCCCCCCeeEEccccc-----cccccCCCceeccCcccccCC-cccHHHHHHHHHHhhcC
Q 033413 15 PYAGGVFL--VTIHFPPDYPFKPPKVAFRTKVF-----HPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLTD 83 (119)
Q Consensus 15 py~gg~f~--~~l~fp~~yP~~pP~i~f~~~i~-----Hpnv~~~G~vc~~~l~~~W~p-~~~i~~il~~i~~ll~~ 83 (119)
.|+|..|. +.|.+|.+||.+||.+....... +.+||++|+|.+..| ++|++ ..++.+++..+.+.|.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHhH
Confidence 48888875 67778999999999998863322 449999999999988 88998 67899999999988764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=5.6e-05 Score=57.21 Aligned_cols=72 Identities=22% Similarity=0.541 Sum_probs=58.1
Q ss_pred CCCCCCcEEE--EEEEcCCCCCCCCCeeEEccc-----cccccccCCCceeccCcccccCC-cccHHHHHHHHHHhhcCC
Q 033413 13 DSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLTDP 84 (119)
Q Consensus 13 ~tpy~gg~f~--~~l~fp~~yP~~pP~i~f~~~-----i~Hpnv~~~G~vc~~~l~~~W~p-~~~i~~il~~i~~ll~~p 84 (119)
-.+|.|..|. +.|-+.+.||..||.+..... -.|-+||++|.|-+..| .+|.+ +.++..++..|.+.|.++
T Consensus 60 p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 60 PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHhcCC
Confidence 4578888876 566689999999999976522 23899999999999999 78995 557999999998888864
Q ss_pred C
Q 033413 85 N 85 (119)
Q Consensus 85 ~ 85 (119)
.
T Consensus 139 p 139 (365)
T KOG2391|consen 139 P 139 (365)
T ss_pred C
Confidence 3
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.72 E-value=0.018 Score=37.98 Aligned_cols=70 Identities=20% Similarity=0.419 Sum_probs=48.3
Q ss_pred CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCce--eccCc--------------ccccCCcc-cHHHH
Q 033413 11 PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDIL--------------KEQWSPAL-TISKV 73 (119)
Q Consensus 11 p~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~v--c~~~l--------------~~~W~p~~-~i~~i 73 (119)
.+.+.|....-.+.|.+|..||..+|.+.+..+-.... ..|.+ |-+.. ...|+|.. +|.+.
T Consensus 34 LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~ 111 (122)
T PF14462_consen 34 LPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTH 111 (122)
T ss_pred CCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHH
Confidence 45667999999999999999999998877665422111 11222 22111 35799987 69999
Q ss_pred HHHHHHhhc
Q 033413 74 LLSICSLLT 82 (119)
Q Consensus 74 l~~i~~ll~ 82 (119)
|..|...|.
T Consensus 112 l~~v~~~L~ 120 (122)
T PF14462_consen 112 LARVEHALA 120 (122)
T ss_pred HHHHHHHHh
Confidence 998888775
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.55 E-value=0.02 Score=38.63 Aligned_cols=65 Identities=23% Similarity=0.458 Sum_probs=31.6
Q ss_pred CCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEcccc-ccccccCCCceeccCcc-ccc---CCcccHHHHH
Q 033413 10 GPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILK-EQW---SPALTISKVL 74 (119)
Q Consensus 10 Gp~~tpy~gg~----------f~~~l~fp~~yP~~pP~i~f~~~i-~Hpnv~~~G~vc~~~l~-~~W---~p~~~i~~il 74 (119)
-+.||-|.|.+ |.+++.+|..||..+|.|..-.-- --.-.|..|+||++.-. .-| .|.++|...|
T Consensus 56 n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 56 NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 35566666655 567777899999999999764210 01233568999997553 445 4566776665
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.44 E-value=0.03 Score=38.65 Aligned_cols=61 Identities=34% Similarity=0.557 Sum_probs=47.4
Q ss_pred EEEEcCCCCCCCCCeeEEccccc---cccccCC-----CceeccCcc-cccCCcccHHHHHHHHHHhhcC
Q 033413 23 VTIHFPPDYPFKPPKVAFRTKVF---HPNINSN-----GSICLDILK-EQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 23 ~~l~fp~~yP~~pP~i~f~~~i~---Hpnv~~~-----G~vc~~~l~-~~W~p~~~i~~il~~i~~ll~~ 83 (119)
+.|.|+.+||..+|.+.+.-..| +||+... ..+|+---. ..|.+..++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999876654322 5777754 679985432 6799999999999999988774
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.29 E-value=0.043 Score=34.53 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=21.6
Q ss_pred CCCCCcEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 14 SPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 14 tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
+.-....+.+.+.||++||..+|.|...+.
T Consensus 44 ~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 44 ESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp TTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 334556799999999999999999987655
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.24 E-value=0.064 Score=33.48 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=21.8
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 18 GGVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 18 gg~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
.-.+.+.+.+|++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999987654
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=88.61 E-value=1.8 Score=33.26 Aligned_cols=59 Identities=25% Similarity=0.539 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeeEEc-cccccccccCCCceeccCcccccCCcc--cHHHHHHHHHH
Q 033413 15 PYAGGVFLVTIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSICS 79 (119)
Q Consensus 15 py~gg~f~~~l~fp~~yP~~pP~i~f~-~~i~Hpnv~~~G~vc~~~l~~~W~p~~--~i~~il~~i~~ 79 (119)
||.|...+-.|.|...+|..||.+.|. ..-|+|... . +..+ .+|++.- .+..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHHH
Confidence 688888888999999999999999996 334777422 1 1223 6798765 35566555543
No 35
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.79 E-value=1.4 Score=29.41 Aligned_cols=65 Identities=23% Similarity=0.463 Sum_probs=40.5
Q ss_pred eCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeeEEcccc-ccccccCCCceecc-CcccccCC---cccHHHH
Q 033413 9 MGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLD-ILKEQWSP---ALTISKV 73 (119)
Q Consensus 9 ~Gp~~tpy~gg~----------f~~~l~fp~~yP~~pP~i~f~~~i-~Hpnv~~~G~vc~~-~l~~~W~p---~~~i~~i 73 (119)
.-++||-|-|.+ |.+++.+|-.||...|.|....-- ----.|..|.||+. ....-|.. ..+|...
T Consensus 58 sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 58 SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 346777777765 556777899999999998653110 01123457999994 45556754 4455444
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=87.40 E-value=0.98 Score=31.37 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=27.9
Q ss_pred cccccc---ccccCCCceeccCcccccCCcccHHHHHHHHHHhhcCCCCC
Q 033413 41 RTKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPD 87 (119)
Q Consensus 41 ~~~i~H---pnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~p~~~ 87 (119)
.|++|| +||+.+|+||+.... .|.......+....+.+.+....
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCcc
Confidence 456676 599999999997642 34444455566666655543333
No 37
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=83.28 E-value=2.3 Score=31.01 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=29.1
Q ss_pred ccccc---ccccCCCceeccCcccccCCcc-cHHHHHHHHHHhhcCCCC
Q 033413 42 TKVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTDPNP 86 (119)
Q Consensus 42 ~~i~H---pnv~~~G~vc~~~l~~~W~p~~-~i~~il~~i~~ll~~p~~ 86 (119)
|++|| +||+++|+||+.... .|.. ++.+ +....+.|.+..+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~F 175 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRF 175 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcc
Confidence 55666 499999999997653 5554 5666 8888887776444
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.55 E-value=2.3 Score=30.64 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEEEEcCCCCCCCCCeeEE
Q 033413 20 VFLVTIHFPPDYPFKPPKVAF 40 (119)
Q Consensus 20 ~f~~~l~fp~~yP~~pP~i~f 40 (119)
.+.+.+.++++||..+|.|.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 688999999999999999943
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=71.60 E-value=19 Score=22.01 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=29.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV 44 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i 44 (119)
+.+|.+.+.|+.+.....-+=++...+.+.|+. |...+..+.
T Consensus 1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pP 42 (84)
T PF03366_consen 1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPP 42 (84)
T ss_dssp -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTT
T ss_pred CcEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCC
Confidence 478999999988876666777888889999886 666555553
No 40
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=65.63 E-value=3.8 Score=30.90 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=32.3
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCC-cccHHHHHHHHHHhhc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSP-ALTISKVLLSICSLLT 82 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p-~~~i~~il~~i~~ll~ 82 (119)
....++|.++.+||.++|.+...-++ .+...|.+ ..++.+++...+..+.
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCSLDLPI--------------PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEECS-TTS---------------HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceeeCCCCc--------------chhhhhcccccCHHHHHHHHHHHHH
Confidence 44678999999999999976433321 11246887 5677777766655554
No 41
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=5.2 Score=28.39 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=39.6
Q ss_pred EEEEEEcCCCCCCCCCeeEEcccc--ccc----cccCCCceeccCcccccCCcccHHHHHHHHHHhhcC
Q 033413 21 FLVTIHFPPDYPFKPPKVAFRTKV--FHP----NINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 21 f~~~l~fp~~yP~~pP~i~f~~~i--~Hp----nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~ 83 (119)
|++.+.+.--=|.+-|...+..-. -++ --.-.+..|++++.+.|+|.+|.++.+.-++.++.+
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 445555543335555766665321 111 111257899999999999999999888777666543
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=59.13 E-value=16 Score=24.42 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.1
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYP-FKPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP-~~pP~i~f~ 41 (119)
+.|.|.|.-..|-.|| ..||-|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4588999999999999 999999775
No 43
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.02 E-value=23 Score=30.52 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=24.8
Q ss_pred EEEeCCCCCCCCCcE-EEEEEEcCCCCCC-CCCeeEEccc
Q 033413 6 ATIMGPPDSPYAGGV-FLVTIHFPPDYPF-KPPKVAFRTK 43 (119)
Q Consensus 6 ~~i~Gp~~tpy~gg~-f~~~l~fp~~yP~-~pP~i~f~~~ 43 (119)
+.+.||-.. -.|-+ .++.|.||.+||. .+|.++|..+
T Consensus 453 vsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 453 VSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 445554322 23434 4789999999997 5899999743
No 44
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=55.59 E-value=19 Score=25.32 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYPFKPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP~~pP~i~f~ 41 (119)
+.|.|.|+-.+|--||..+|-|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4688999999999999999999886
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=54.93 E-value=18 Score=27.96 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCCCCCCeeEEccc
Q 033413 20 VFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 20 ~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
.|-+.+.+|..||...|.++|.+-
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEee
Confidence 366778889999999999999764
No 46
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=54.03 E-value=30 Score=27.12 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=26.1
Q ss_pred cccC-CCceeccCcc---cccCCcc--cHHHHHHHHHHh
Q 033413 48 NINS-NGSICLDILK---EQWSPAL--TISKVLLSICSL 80 (119)
Q Consensus 48 nv~~-~G~vc~~~l~---~~W~p~~--~i~~il~~i~~l 80 (119)
.|.+ +|+||.++=- ++..|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 4554 9999997642 6788876 899999999888
No 47
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=52.41 E-value=46 Score=19.46 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 76 SICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 76 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+.++..-++...+.++|...+.+--+.|...+-+.+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655666778899999999989999988877777766
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.05 E-value=26 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.7
Q ss_pred CCcEEEEEEEcCCCCC-----CCCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYP-----FKPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP-----~~pP~i~f~ 41 (119)
+.|.|.|+-.+|--|| ..||-|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 3577999999999999 899998775
No 49
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=45.66 E-value=35 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=27.2
Q ss_pred CCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 87 DDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 87 ~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
....+.+|+..|.++++.|.+.+.+.+++.+
T Consensus 236 y~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 236 YAFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EEeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 3457899999999999999999999998765
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=44.59 E-value=31 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
-.+.+.+..+..||...|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4578999999999999999998765
No 51
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=43.42 E-value=60 Score=20.15 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 16 YAGGVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 16 y~gg~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788899998999999 599998865
No 52
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=40.62 E-value=58 Score=17.37 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=17.8
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.||...+..-+-...+++|..+++||
T Consensus 3 ~eA~~~L~~iP~fvR~~~r~~~E~~A 28 (45)
T PF08369_consen 3 DEAEARLDRIPFFVRKKLRDAAEKYA 28 (45)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 35555565666666678899999888
No 53
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=40.37 E-value=30 Score=28.71 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeEEccc
Q 033413 14 SPYAGGVFLVTIHFPPDYPF---KPPKVAFRTK 43 (119)
Q Consensus 14 tpy~gg~f~~~l~fp~~yP~---~pP~i~f~~~ 43 (119)
+||.=|.|.+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5788899987 457999996 7899999987
No 54
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=40.08 E-value=68 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 93 EIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 93 ~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
+...++++|+++|.+..++.+++.
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 566788999999999988877653
No 55
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=39.46 E-value=31 Score=21.96 Aligned_cols=20 Identities=35% Similarity=0.773 Sum_probs=17.2
Q ss_pred EEEEEEeCCCCCCCCCcEEEEE
Q 033413 3 HWQATIMGPPDSPYAGGVFLVT 24 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg~f~~~ 24 (119)
+|.|.|=| +..|+|-.|.|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 79999987 679999999873
No 56
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.21 E-value=65 Score=26.50 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+.++-++|++.|.++|++...++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 46777778999999999999988774
No 57
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=36.11 E-value=93 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCCCeeEEccc
Q 033413 21 FLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 21 f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
-.+++.| .||-..||.|.|+.+
T Consensus 55 ~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 55 LRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred eEEEEec-cccCcCCCceEEecc
Confidence 4556666 789999999999876
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=35.94 E-value=57 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.3
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYPF-----KPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP~-----~pP~i~f~ 41 (119)
+.|.|.|+-..|-.||. .||-|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45779999999999998 77777664
No 59
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=35.59 E-value=77 Score=21.93 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=33.3
Q ss_pred cCCcc-cHHHHHHHHHHhhcCCCCCCCCcHH----HHHHHHHCHHHHHHHHHHHHHHh
Q 033413 64 WSPAL-TISKVLLSICSLLTDPNPDDPLVPE----IAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 64 W~p~~-~i~~il~~i~~ll~~p~~~~~~n~~----a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
..|.+ ++.+++.+|..++.... +|.| .-..|+.|+..+++.|+.-.-+|
T Consensus 7 ~~p~~~sl~dLv~~lh~~F~~~~----vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 7 LKPRMISLVDLVVQLHEIFQQKL----VNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred cCchhhhHHHHHHHHHHHHHhcc----cCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 34444 78899999999887543 3332 33457889999988887655544
No 60
>PRK05414 urocanate hydratase; Provisional
Probab=35.34 E-value=45 Score=27.45 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+..+-++|++.|+++|++...++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57778888999999999999988774
No 61
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=35.33 E-value=66 Score=19.04 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHhhcC
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 83 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~ 83 (119)
-|+++|.|.+..++.-=-.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 467899999999876666778888888888877765
No 62
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=34.36 E-value=44 Score=24.16 Aligned_cols=54 Identities=28% Similarity=0.535 Sum_probs=40.5
Q ss_pred CCCCeeEEcccccccccc--CCCceeccCccccc--CCcccHHHHHHHHHHhhcCCCC
Q 033413 33 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNP 86 (119)
Q Consensus 33 ~~pP~i~f~~~i~Hpnv~--~~G~vc~~~l~~~W--~p~~~i~~il~~i~~ll~~p~~ 86 (119)
..||.|.|-.+.|.-.|| +.|-|--++....| -|+..+.+-|..|..++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcc
Confidence 479999999999999998 45554445554444 4778888888888888877654
No 63
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=34.27 E-value=69 Score=26.31 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+..+-.+|++.|.++|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777778999999999999988774
No 64
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=33.44 E-value=1.1e+02 Score=18.42 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 88 DPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 88 ~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|-+.+|...|++-.+..++..++..++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578899999998888888888888877764
No 65
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=33.35 E-value=67 Score=22.57 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.9
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEc
Q 033413 18 GGVFLVTIHFPPDYPF-----KPPKVAFR 41 (119)
Q Consensus 18 gg~f~~~l~fp~~yP~-----~pP~i~f~ 41 (119)
.|.|.|+-.+|--||. .||-|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4779999999999995 66666543
No 66
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.66 E-value=92 Score=21.72 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=34.0
Q ss_pred cCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 64 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
|..-..+..+...|...|.+-+++ -+..|++|.+.|.++.++..+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPS------EQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 776677888888888888765432 35578888888888876655544
No 67
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=31.46 E-value=1.1e+02 Score=17.80 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 76 SICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 76 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+.++..-++...+.+++..+..+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776777788899988888888888888877777665
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=30.50 E-value=99 Score=23.88 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCC-CCCCcEEEEEEEcC--CCCCCCCCeeEEcc
Q 033413 3 HWQATIMGPPDS-PYAGGVFLVTIHFP--PDYPFKPPKVAFRT 42 (119)
Q Consensus 3 ~w~~~i~Gp~~t-py~gg~f~~~l~fp--~~yP~~pP~i~f~~ 42 (119)
+|+..|.|-+++ -|++|.+++.+.-. ++-=.+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 578899998876 78899888776521 22234677999964
No 69
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=44 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=19.9
Q ss_pred CCCCCCCCeeEEccccccccccCCC
Q 033413 29 PDYPFKPPKVAFRTKVFHPNINSNG 53 (119)
Q Consensus 29 ~~yP~~pP~i~f~~~i~Hpnv~~~G 53 (119)
++=+...|+|.|.-.+|||+|-+--
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~~~ 327 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQPAE 327 (334)
T ss_pred CCCcccCceEEEEEeccCccccccc
Confidence 4445678999999999999997543
No 70
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=28.20 E-value=1.1e+02 Score=17.39 Aligned_cols=23 Identities=4% Similarity=0.215 Sum_probs=19.4
Q ss_pred CCcHHHHHHHHHCHHHHHHHHHH
Q 033413 89 PLVPEIAHMYKTDRNKYETTARS 111 (119)
Q Consensus 89 ~~n~~a~~~~~~~~~~f~~~~~~ 111 (119)
..|++.+.+..+|++.|.+...+
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLNE 55 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHHS
T ss_pred ccCHHHHHHHHHCHHHHHHHHcC
Confidence 46889999999999999987643
No 71
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.13 E-value=1.5e+02 Score=21.58 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=34.0
Q ss_pred cCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 64 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
|..-.....+...|.+.|..-+++ | +..|++|.+.|.++.++..+++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~---~---~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPD---N---KKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCcc---c---HHHHHHHHHHHHHHHHHHHHHH
Confidence 766677888889999988865443 2 4578888888888876665544
No 72
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=27.05 E-value=51 Score=18.73 Aligned_cols=18 Identities=11% Similarity=0.493 Sum_probs=11.5
Q ss_pred ccCCcccHHHHHHHHHHh
Q 033413 63 QWSPALTISKVLLSICSL 80 (119)
Q Consensus 63 ~W~p~~~i~~il~~i~~l 80 (119)
+|.|.++|.++|...-.-
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 799999999999876553
No 73
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=27.04 E-value=94 Score=23.50 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.4
Q ss_pred CCcEEEEEEEcCCCCC------------------CCCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYP------------------FKPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP------------------~~pP~i~f~ 41 (119)
+.|.|.|+-..|.-|| ..||-|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4678999999999997 567877765
No 74
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.70 E-value=1.4e+02 Score=21.81 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=33.7
Q ss_pred cCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 64 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
|..-..+..+...|...|..-+++ -+..|++|-+.|.++.++..+++
T Consensus 115 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~ 161 (266)
T cd01018 115 WLSPANAKIMAENIYEALAELDPQ------NATYYQANLDALLAELDALDSEI 161 (266)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 766667888889999988865543 35577788888888776655543
No 75
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.57 E-value=1.3e+02 Score=22.23 Aligned_cols=48 Identities=13% Similarity=0.282 Sum_probs=35.4
Q ss_pred cCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 64 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
|-....+..++..|..-|..-++ +-+..|++|-+.|.++.++.-+++.
T Consensus 124 Wldp~n~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 124 WLSPENAAEVAQAVAEKLSALDP------DNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCc------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666778888888888875433 3456889999999998877666553
No 76
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.36 E-value=82 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=19.9
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 91 VPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 91 n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
.+++++.-++.+.++.+.|-.-++|.
T Consensus 75 seeake~irq~rq~~EklAg~lTkki 100 (103)
T COG4847 75 SEEAKESIRQVRQEVEKLAGDLTKKI 100 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888887777664
No 77
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=24.95 E-value=1.6e+02 Score=20.13 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033413 4 WQATIMGPPDSPYAGGVFLVTIHFPPD 30 (119)
Q Consensus 4 w~~~i~Gp~~tpy~gg~f~~~l~fp~~ 30 (119)
.|+.+.|++...=+|..+.+++.|-+.
T Consensus 105 yHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 105 YHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred EEEEEeccCCCccCCCEEEEEEEEecC
Confidence 588999999988899999999999654
No 78
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=24.43 E-value=32 Score=22.18 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=15.9
Q ss_pred CCCceeccCcccccCCcccH
Q 033413 51 SNGSICLDILKEQWSPALTI 70 (119)
Q Consensus 51 ~~G~vc~~~l~~~W~p~~~i 70 (119)
..|.+|.-.+.+.|+|.+++
T Consensus 49 GGg~~CC~~~p~~W~pg~tv 68 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTV 68 (118)
T ss_pred CCceEEEEEcCCCCCCCCEE
Confidence 35667888888999999874
No 79
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=24.05 E-value=2.7e+02 Score=19.84 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=42.2
Q ss_pred CCCeeEEccccccccc--------cCCCceeccCcccccCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHH
Q 033413 34 KPPKVAFRTKVFHPNI--------NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKY 105 (119)
Q Consensus 34 ~pP~i~f~~~i~Hpnv--------~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f 105 (119)
.||-|-+...+.-..| .+.-.+|+.+--.+|...-+...++.-|.-...+.+.+ |.-...++.-..=
T Consensus 105 VPplidl~ngVLigSVSP~iR~k~F~k~~~C~TlEvP~~~~~~~~~~~~~iL~~~~~s~~Rd-----e~i~kl~~~YP~q 179 (193)
T PF09892_consen 105 VPPLIDLGNGVLIGSVSPIIRRKYFKKEDFCMTLEVPNWKSDESKEEVLEILEIIKESKNRD-----EFIEKLKKKYPEQ 179 (193)
T ss_pred CCCeeeccCCeEEeecCHHHHhcccCccceEEEEEcCCCccHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHhhHH
Confidence 4777766554433333 23457898776667876666666655555555554433 2222223333333
Q ss_pred HHHHHHHHHHh
Q 033413 106 ETTARSWTQKY 116 (119)
Q Consensus 106 ~~~~~~~~~~~ 116 (119)
.++|+..+++|
T Consensus 180 ~~~A~~~a~~f 190 (193)
T PF09892_consen 180 AKKAKEYAKEF 190 (193)
T ss_pred HHHHHHHHHHh
Confidence 55666666665
No 80
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=23.88 E-value=1.2e+02 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=14.3
Q ss_pred CCcEEEEEEEcCCCCC
Q 033413 17 AGGVFLVTIHFPPDYP 32 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP 32 (119)
+.|.|.|+-..|.-||
T Consensus 171 ~~G~y~F~Ti~Pg~Yp 186 (277)
T cd03461 171 EDGRYAFRTLRPTPYP 186 (277)
T ss_pred CCCCEEEEEECCCCcC
Confidence 4688999999999998
No 81
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.85 E-value=1.1e+02 Score=21.05 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=24.4
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
-|+++|.|..-+ .++++.-+..++|..|..+
T Consensus 125 vId~dG~I~~~~--~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 125 VIDPDGKIRYVW--RKVKVKGHADEVLAALKKL 155 (157)
T ss_pred EECCCCeEEEEe--cCCCCcccHHHHHHHHHHh
Confidence 567788888765 6778888888998888765
No 82
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.65 E-value=30 Score=17.25 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=9.0
Q ss_pred cccccccCCCc-eecc
Q 033413 44 VFHPNINSNGS-ICLD 58 (119)
Q Consensus 44 i~Hpnv~~~G~-vc~~ 58 (119)
.|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999997766 4554
No 83
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=23.41 E-value=89 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=16.1
Q ss_pred EEEEeCCCCCCCCCcEEEEEEEcCCC
Q 033413 5 QATIMGPPDSPYAGGVFLVTIHFPPD 30 (119)
Q Consensus 5 ~~~i~Gp~~tpy~gg~f~~~l~fp~~ 30 (119)
|+.+..+.++...|..++++|.+.++
T Consensus 1 h~yl~~~~gGl~~GD~l~~~i~v~~g 26 (209)
T PF01774_consen 1 HVYLMNPSGGLLGGDRLRIDITVGPG 26 (209)
T ss_dssp -EEEEE--S-B-TT-EEEEEEEE-TT
T ss_pred CEEEEeCCCcCcCCCEEEEEEEECCC
Confidence 45677799999999999999999765
No 84
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.99 E-value=1.4e+02 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCCCCCcEEEEEEEcCCCCCCCC--CeeEEcc
Q 033413 13 DSPYAGGVFLVTIHFPPDYPFKP--PKVAFRT 42 (119)
Q Consensus 13 ~tpy~gg~f~~~l~fp~~yP~~p--P~i~f~~ 42 (119)
.+.+.|..|++-+..|.+||-.- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 57899999999999999999877 9998874
No 85
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=22.90 E-value=47 Score=22.90 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=10.6
Q ss_pred cccccccccCCCceec
Q 033413 42 TKVFHPNINSNGSICL 57 (119)
Q Consensus 42 ~~i~Hpnv~~~G~vc~ 57 (119)
.++|||+.| .|.+|.
T Consensus 49 KPiYhP~~D-cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD-CGDHVV 63 (165)
T ss_pred CCccCCccC-CCCEEE
Confidence 468999988 555543
No 86
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=22.57 E-value=41 Score=16.59 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=14.9
Q ss_pred HHHCHHHHHHHHHHHHHHhc
Q 033413 98 YKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 98 ~~~~~~~f~~~~~~~~~~~a 117 (119)
++.|...|+..||+.+-+-+
T Consensus 8 i~~d~~~Fr~lVQ~LTG~~~ 27 (31)
T PF05678_consen 8 IHTDPSNFRALVQRLTGAPS 27 (31)
T ss_pred EEeCHHHHHHHHHHhHCcCC
Confidence 34678899999998875543
No 87
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.47 E-value=1.3e+02 Score=22.72 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.1
Q ss_pred CCcEEEEEEEcCCCCC
Q 033413 17 AGGVFLVTIHFPPDYP 32 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP 32 (119)
+.|.|.|+-..|.-||
T Consensus 175 ~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 175 ADGRYRFRSIMPSGYG 190 (282)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4688999999999996
No 88
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.48 E-value=1.9e+02 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=32.9
Q ss_pred cCCcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 64 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 64 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
|-.-.....+...|...|..-+++ -+..|++|.+.|.++.++.-+++
T Consensus 104 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~ 150 (276)
T cd01016 104 WFDVKLWKYAVKAVAEVLSEKLPE------HKDEFQANSEAYVEELDSLDAYA 150 (276)
T ss_pred ccCHHHHHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667788888888888865443 25568888888888776655543
No 89
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=21.01 E-value=1.8e+02 Score=16.64 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 89 PLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 89 ~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.++.+++....++-+.+.+.+-+.+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999988888887776
No 90
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=20.35 E-value=1.5e+02 Score=22.32 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.7
Q ss_pred CCcEEEEEEEcCCCCC
Q 033413 17 AGGVFLVTIHFPPDYP 32 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP 32 (119)
+.|.|.|+-..|..||
T Consensus 183 adG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQ 198 (281)
T ss_pred CCCCEEEEEECCCCcC
Confidence 4688999999998887
Done!