Query 033413
Match_columns 119
No_of_seqs 150 out of 1067
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 22:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.4E-47 4.9E-52 260.1 16.0 119 1-119 33-151 (151)
2 2r0j_A Ubiquitin carrier prote 100.0 1.3E-47 4.5E-52 259.8 15.1 119 1-119 30-148 (149)
3 2c2v_B Ubiquitin-conjugating e 100.0 9.5E-48 3.3E-52 261.7 13.2 119 1-119 34-152 (154)
4 2bep_A Ubiquitin-conjugating e 100.0 4.7E-47 1.6E-51 259.5 16.0 119 1-119 40-159 (159)
5 1z2u_A Ubiquitin-conjugating e 100.0 5.2E-47 1.8E-51 257.1 15.7 118 1-118 33-150 (150)
6 1fxt_A Ubiquitin-conjugating e 100.0 1.7E-47 5.6E-52 259.3 13.1 118 1-118 31-149 (149)
7 2ayv_A Ubiquitin-conjugating e 100.0 5.6E-47 1.9E-51 260.7 15.7 117 1-117 50-166 (166)
8 2c4o_A Ubiquitin-conjugating e 100.0 8.9E-47 3E-51 259.5 15.7 118 1-118 48-165 (165)
9 2aak_A UBC1, ubiquitin conjuga 100.0 1.3E-46 4.4E-51 255.6 15.8 118 1-118 33-150 (152)
10 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.4E-47 3.2E-51 260.2 15.1 118 1-118 33-150 (169)
11 1zdn_A Ubiquitin-conjugating e 100.0 6.5E-47 2.2E-51 258.6 13.6 117 1-117 42-158 (158)
12 1jat_A Ubiquitin-conjugating e 100.0 5.5E-47 1.9E-51 258.2 12.8 118 1-118 34-151 (155)
13 1yh2_A HSPC150 protein similar 100.0 2.4E-46 8.2E-51 258.2 16.0 119 1-119 33-155 (169)
14 3h8k_A Ubiquitin-conjugating e 100.0 2.5E-46 8.5E-51 257.0 15.8 119 1-119 33-164 (164)
15 2gjd_A Ubiquitin-conjugating e 100.0 3.9E-46 1.3E-50 254.5 15.4 118 1-118 38-157 (157)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 5E-46 1.7E-50 261.1 15.7 118 1-118 74-192 (193)
17 3rcz_B SUMO-conjugating enzyme 100.0 6.1E-46 2.1E-50 254.9 15.6 118 1-118 44-163 (163)
18 2grr_A Ubiquitin-conjugating e 100.0 6E-46 2.1E-50 254.5 15.5 119 1-119 41-161 (161)
19 3k9o_A Ubiquitin-conjugating e 100.0 6E-46 2.1E-50 262.4 15.9 119 1-119 37-156 (201)
20 2ucz_A UBC7, ubiquitin conjuga 100.0 5.5E-46 1.9E-50 255.5 14.7 118 1-118 34-164 (165)
21 2e2c_A Ubiquitin conjugating e 100.0 6E-46 2.1E-50 253.3 14.8 117 1-118 38-154 (156)
22 3bzh_A Ubiquitin-conjugating e 100.0 9.5E-46 3.3E-50 259.9 15.8 118 1-118 77-194 (194)
23 2pwq_A Ubiquitin conjugating e 100.0 6.2E-46 2.1E-50 264.5 14.0 119 1-119 52-171 (216)
24 2onu_A Ubiquitin-conjugating e 100.0 7.1E-46 2.4E-50 252.0 12.8 119 1-119 28-148 (152)
25 1i7k_A Ubiquitin-conjugating e 100.0 1.8E-45 6.3E-50 255.7 13.9 118 1-119 59-176 (179)
26 2z5d_A Ubiquitin-conjugating e 100.0 1.6E-45 5.5E-50 255.8 12.1 118 1-118 50-169 (179)
27 1tte_A Ubiquitin-conjugating e 100.0 7.4E-46 2.5E-50 263.9 10.7 119 1-119 32-151 (215)
28 1wzv_A Ubiquitin-conjugating e 100.0 3.3E-45 1.1E-49 249.4 13.4 117 1-118 34-151 (155)
29 3e46_A Ubiquitin-conjugating e 100.0 9.3E-45 3.2E-49 263.5 15.9 119 1-119 89-208 (253)
30 3fn1_B NEDD8-conjugating enzym 100.0 9.9E-45 3.4E-49 249.7 14.6 117 1-118 44-167 (167)
31 1yf9_A Ubiquitin carrier prote 100.0 7.7E-45 2.6E-49 251.0 12.6 118 1-118 37-156 (171)
32 1c4z_D UBCH7, ubiquitin conjug 100.0 8.1E-45 2.8E-49 247.2 11.4 118 1-119 32-150 (154)
33 2y9m_A Ubiquitin-conjugating e 100.0 4.6E-44 1.6E-48 247.4 15.2 117 1-117 47-167 (172)
34 3rz3_A Ubiquitin-conjugating e 100.0 1.2E-43 4.1E-48 247.4 14.1 118 1-118 37-173 (183)
35 1y8x_A Ubiquitin-conjugating e 100.0 1.7E-43 5.7E-48 242.1 14.3 114 1-115 34-147 (160)
36 1yrv_A Ubiquitin-conjugating l 100.0 1.6E-43 5.4E-48 244.1 12.5 114 1-115 52-168 (169)
37 2nvu_C NEDD8-conjugating enzym 100.0 4.6E-43 1.6E-47 243.9 13.8 114 1-115 54-167 (180)
38 2awf_A Ubiquitin-conjugating e 100.0 1.3E-43 4.3E-48 245.2 10.9 112 1-112 47-172 (172)
39 4ddg_A Ubiquitin-conjugating e 100.0 2E-42 6.8E-47 265.3 15.8 119 1-119 32-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 5.6E-42 1.9E-46 240.2 13.1 113 3-116 65-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.1E-39 3.8E-44 224.5 11.5 110 1-110 49-163 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 5.3E-39 1.8E-43 239.4 11.3 118 1-118 109-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 6.9E-39 2.4E-43 218.3 6.6 100 1-101 54-156 (156)
44 2a4d_A Ubiquitin-conjugating e 100.0 7.6E-37 2.6E-41 208.9 9.5 95 1-95 58-156 (160)
45 1jat_B Ubiquitin-conjugating e 100.0 8.3E-38 2.8E-42 209.3 3.7 97 1-98 39-138 (138)
46 2fo3_A Ubiquitin-conjugating e 100.0 5.7E-36 2E-40 197.3 10.5 87 1-87 35-122 (125)
47 2hlw_A Ubiquitin-conjugating e 100.0 1.5E-36 5.3E-41 209.2 6.9 95 1-95 68-166 (170)
48 2h2y_A Ubiquitin-conjugating e 100.0 2.9E-35 1E-39 196.5 10.8 86 1-86 49-135 (136)
49 2a7l_A Hypothetical ubiquitin- 100.0 1.9E-34 6.6E-39 192.4 10.8 82 1-82 53-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.9E-32 6.5E-37 191.4 12.7 105 1-107 43-153 (187)
51 1zuo_A Hypothetical protein LO 100.0 2.3E-34 7.7E-39 200.9 0.5 109 1-117 59-181 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.6E-24 5.4E-29 147.2 3.9 75 1-75 55-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 2.2E-20 7.5E-25 127.3 8.1 85 3-88 62-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 9.9E-18 3.4E-22 111.7 2.2 63 3-68 59-132 (168)
55 3obq_A Tumor susceptibility ge 99.6 3.7E-16 1.3E-20 104.8 6.9 77 1-83 53-138 (146)
56 2ebm_A RWD domain-containing p 96.2 0.027 9.3E-07 35.8 7.3 25 18-42 54-78 (128)
57 2daw_A RWD domain containing p 95.6 0.13 4.3E-06 34.0 8.7 23 20-42 76-98 (154)
58 2yz0_A Serine/threonine-protei 94.7 0.099 3.4E-06 33.6 6.1 24 19-42 62-85 (138)
59 2ebk_A RWD domain-containing p 94.2 0.3 1E-05 30.9 7.6 23 19-41 56-78 (128)
60 2day_A Ring finger protein 25; 94.2 0.17 5.7E-06 32.0 6.3 25 19-43 59-83 (128)
61 2dax_A Protein C21ORF6; RWD do 93.8 0.21 7.1E-06 32.7 6.4 24 20-43 74-97 (152)
62 3zqs_A E3 ubiquitin-protein li 93.2 0.38 1.3E-05 32.9 6.9 52 17-82 36-87 (186)
63 1ukx_A GCN2, GCN2 EIF2alpha ki 92.8 0.067 2.3E-06 34.3 2.6 23 19-41 63-85 (137)
64 2cwb_A Chimera of immunoglobul 91.9 0.029 1E-06 35.3 0.0 35 84-118 21-55 (108)
65 3qrl_A Transcription initiatio 56.3 38 0.0013 21.9 6.0 43 1-45 32-77 (140)
66 3rls_A YAF9, protein AF-9 homo 46.2 62 0.0021 21.7 5.8 40 2-43 33-72 (175)
67 2kru_A Light-independent proto 40.5 28 0.00096 19.4 2.9 28 91-118 7-34 (63)
68 1h3o_B Transcription initiatio 35.6 48 0.0017 19.0 3.5 41 77-117 11-51 (76)
69 2bum_A Protocatechuate 3,4-dio 35.2 37 0.0013 23.3 3.4 25 17-41 109-138 (209)
70 2jrw_A Cyclic extended PEP.1; 34.1 11 0.00039 16.7 0.4 16 32-47 4-19 (26)
71 2fkn_A Urocanate hydratase; ro 31.7 55 0.0019 25.8 4.1 26 92-117 278-303 (552)
72 2l09_A ASR4154 protein; proto- 31.6 27 0.00092 19.4 1.8 27 91-117 6-32 (62)
73 1x87_A Urocanase protein; stru 31.5 56 0.0019 25.8 4.1 26 92-117 277-302 (551)
74 1uwk_A Urocanate hydratase; hy 31.1 57 0.002 25.7 4.1 26 92-117 282-307 (557)
75 4g2e_A Peroxiredoxin; redox pr 30.4 42 0.0014 21.0 2.9 33 48-80 124-156 (157)
76 1zoq_C CREB-binding protein, i 30.3 27 0.00092 18.1 1.5 29 90-118 18-46 (47)
77 2yzh_A Probable thiol peroxida 28.7 33 0.0011 21.6 2.2 34 48-81 138-171 (171)
78 4gqc_A Thiol peroxidase, perox 28.5 57 0.0019 20.7 3.3 35 48-82 126-160 (164)
79 2f4m_B UV excision repair prot 28.1 66 0.0023 17.6 3.1 20 90-109 37-56 (61)
80 2jsy_A Probable thiol peroxida 26.4 47 0.0016 20.6 2.6 34 48-81 133-166 (167)
81 3zqs_A E3 ubiquitin-protein li 25.7 31 0.0011 23.4 1.7 54 19-77 124-179 (186)
82 1pve_A HHR23B, UV excision rep 25.7 67 0.0023 18.3 2.9 22 89-110 38-59 (72)
83 2ccv_A Helix pomatia agglutini 24.7 1.2E+02 0.004 18.1 4.2 25 18-43 28-52 (101)
84 2k6w_A Putative uncharacterize 23.3 89 0.003 19.3 3.4 26 4-29 82-107 (120)
85 3keb_A Probable thiol peroxida 23.1 62 0.0021 22.3 2.8 37 48-84 142-178 (224)
86 3kxt_A Chromatin protein CREN7 21.2 59 0.002 17.5 1.9 18 14-33 39-56 (56)
87 3pft_A Flavin reductase; desul 20.6 47 0.0016 21.3 1.7 30 33-62 42-74 (157)
88 2bum_B Protocatechuate 3,4-dio 20.5 56 0.0019 23.0 2.2 25 17-41 134-165 (241)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.4e-47 Score=260.12 Aligned_cols=119 Identities=66% Similarity=1.236 Sum_probs=117.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (151)
T 4gpr_A 33 IFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSL 112 (151)
T ss_dssp TTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 113 l~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 113 LTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp HHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred hcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999974
No 2
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.3e-47 Score=259.82 Aligned_cols=119 Identities=50% Similarity=0.964 Sum_probs=116.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+||+++|.++|+|+++|.+||.+|+++
T Consensus 30 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 109 (149)
T 2r0j_A 30 YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL 109 (149)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 110 l~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 110 LSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp HHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999974
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-48 Score=261.75 Aligned_cols=119 Identities=50% Similarity=0.958 Sum_probs=114.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 113 (154)
T 2c2v_B 34 ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQAL 113 (154)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHH
T ss_pred hheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 114 l~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 114 LSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999974
No 4
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.7e-47 Score=259.49 Aligned_cols=119 Identities=48% Similarity=0.934 Sum_probs=116.7
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||.+|++
T Consensus 40 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ 119 (159)
T 2bep_A 40 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 119 (159)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|+++|.++||+|+++||+|
T Consensus 120 ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 120 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999986
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=5.2e-47 Score=257.09 Aligned_cols=118 Identities=82% Similarity=1.475 Sum_probs=116.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (150)
T 1z2u_A 33 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 112 (150)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 113 l~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 113 LCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred hhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999996
No 6
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.7e-47 Score=259.30 Aligned_cols=118 Identities=51% Similarity=1.022 Sum_probs=116.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||.+|++
T Consensus 31 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ 110 (149)
T 1fxt_A 31 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQA 110 (149)
T ss_dssp SSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 111 ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 111 LLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp HHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999996
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-47 Score=260.67 Aligned_cols=117 Identities=81% Similarity=1.445 Sum_probs=115.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 50 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sl 129 (166)
T 2ayv_A 50 MFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSL 129 (166)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 130 l~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 130 LTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998
No 8
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=8.9e-47 Score=259.48 Aligned_cols=118 Identities=84% Similarity=1.464 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 48 l~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~l 127 (165)
T 2c4o_A 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSL 127 (165)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 128 l~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 128 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999996
No 9
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.3e-46 Score=255.64 Aligned_cols=118 Identities=45% Similarity=0.909 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 112 (152)
T 2aak_A 33 IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSL 112 (152)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 113 l~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 113 LCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp HTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999996
No 10
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.4e-47 Score=260.20 Aligned_cols=118 Identities=40% Similarity=0.843 Sum_probs=116.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 33 l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~l 112 (169)
T 1ayz_A 33 VMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSL 112 (169)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 113 l~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 113 FNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp HTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999995
No 11
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.5e-47 Score=258.60 Aligned_cols=117 Identities=40% Similarity=0.753 Sum_probs=115.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 42 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~l 121 (158)
T 1zdn_A 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCL 121 (158)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHH
T ss_pred hhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
|.+|++++|+|.+|+++|++|++.|.++||+|+++||
T Consensus 122 l~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 122 LIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp HHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998
No 12
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=5.5e-47 Score=258.23 Aligned_cols=118 Identities=48% Similarity=0.907 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~l 113 (155)
T 1jat_A 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQAL 113 (155)
T ss_dssp EEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred hhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|++.|.++||+|+++||+
T Consensus 114 l~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 114 LASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp HHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred HhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999996
No 13
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-46 Score=258.24 Aligned_cols=119 Identities=45% Similarity=0.896 Sum_probs=116.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc----cccCCcccHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLS 76 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~----~~W~p~~~i~~il~~ 76 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. ++|+|+++|.+||.+
T Consensus 33 l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~s 112 (169)
T 1yh2_A 33 MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTS 112 (169)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHH
T ss_pred hheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 77 ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 77 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 113 i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 113 IQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999964
No 14
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.5e-46 Score=257.00 Aligned_cols=119 Identities=39% Similarity=0.816 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-------------cccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+||+++|. ++|+|+
T Consensus 33 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~ 112 (164)
T 3h8k_A 33 FFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPV 112 (164)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTT
T ss_pred ccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+||++||.+|+++|.+|++++|+|.+|+++|++|+++|+++||+|++|++++
T Consensus 113 ~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~~~ 164 (164)
T 3h8k_A 113 QSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164 (164)
T ss_dssp CCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999874
No 15
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.9e-46 Score=254.49 Aligned_cols=118 Identities=35% Similarity=0.802 Sum_probs=115.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCccc--ccCCcccHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSIC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~--~W~p~~~i~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||.+|+
T Consensus 38 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 117 (157)
T 2gjd_A 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQ 117 (157)
T ss_dssp EEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 118 ~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 118 DLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp HHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999996
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5e-46 Score=261.11 Aligned_cols=118 Identities=49% Similarity=0.974 Sum_probs=115.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccccccccc-CCCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~-~~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++|.+||.+|++
T Consensus 74 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~s 153 (193)
T 2f4z_A 74 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQA 153 (193)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 154 ll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 154 MLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192 (193)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999997
No 17
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-46 Score=254.85 Aligned_cols=118 Identities=40% Similarity=0.860 Sum_probs=114.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccc--cCCcccHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSIC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~--W~p~~~i~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|... |+|+++|++||.+|+
T Consensus 44 l~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~ 123 (163)
T 3rcz_B 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQ 123 (163)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999764 999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
++|.+|++++|+|.+|+++|++|+++|.++||+|++|||.
T Consensus 124 ~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 124 DLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp HHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999983
No 18
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6e-46 Score=254.47 Aligned_cols=119 Identities=39% Similarity=0.831 Sum_probs=115.6
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCccc--ccCCcccHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSIC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~--~W~p~~~i~~il~~i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||.+|+
T Consensus 41 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~ 120 (161)
T 2grr_A 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ 120 (161)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999975 8999999999999999
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
++|.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 121 ~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 121 ELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp HHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 19
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6e-46 Score=262.38 Aligned_cols=119 Identities=48% Similarity=0.934 Sum_probs=116.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++
T Consensus 37 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ 116 (201)
T 3k9o_A 37 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 116 (201)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 117 ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 117 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999974
No 20
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-46 Score=255.52 Aligned_cols=118 Identities=39% Similarity=0.850 Sum_probs=115.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCc-------------ccccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l-------------~~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+||+++| .++|+|+
T Consensus 34 l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~ 113 (165)
T 2ucz_A 34 IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPV 113 (165)
T ss_dssp CSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTT
T ss_pred ccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCc
Confidence 579999999999999999999999999999999999999999999999999999999999 6899999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++++.
T Consensus 114 ~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~~ 164 (165)
T 2ucz_A 114 QSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLG 164 (165)
T ss_dssp CCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999975
No 21
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=6e-46 Score=253.32 Aligned_cols=117 Identities=39% Similarity=0.819 Sum_probs=114.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 38 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~l 117 (156)
T 2e2c_A 38 LFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSL 117 (156)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCceEECccccccCCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++| +|+++|+++||+|+++||.
T Consensus 118 l~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 118 LGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 8999999999999999984
No 22
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=9.5e-46 Score=259.94 Aligned_cols=118 Identities=64% Similarity=1.190 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 77 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~l 156 (194)
T 3bzh_A 77 IYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSL 156 (194)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECCCCceechhhhccCCCcCcHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 157 l~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 157 LTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp HHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999996
No 23
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=6.2e-46 Score=264.50 Aligned_cols=119 Identities=52% Similarity=1.044 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccccccccc-CCCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~-~~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .+|.||+++|.++|+|+++|.+||.+|++
T Consensus 52 l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~s 131 (216)
T 2pwq_A 52 FFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQA 131 (216)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHH
T ss_pred cceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 132 LL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 132 LLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred HHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999974
No 24
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=7.1e-46 Score=252.02 Aligned_cols=119 Identities=34% Similarity=0.789 Sum_probs=115.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHH-HH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-IC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~-i~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|++++.+||.+ |+
T Consensus 28 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~ 107 (152)
T 2onu_A 28 TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLP 107 (152)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHH
T ss_pred cceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999 68
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+||.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 108 ~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 108 QLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp HHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred HHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999973
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-45 Score=255.66 Aligned_cols=118 Identities=35% Similarity=0.701 Sum_probs=115.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 59 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sl 138 (179)
T 1i7k_A 59 LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSL 138 (179)
T ss_dssp EEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+|+++| +|+++|.++|++++++++++
T Consensus 139 l~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 139 LGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp HHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred HhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 99999999999999999875
No 26
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=255.82 Aligned_cols=118 Identities=36% Similarity=0.823 Sum_probs=115.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHH-HH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLS-IC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~-i~ 78 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||.+ |+
T Consensus 50 l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~ 129 (179)
T 2z5d_A 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLP 129 (179)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHH
T ss_pred CceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999998 9999999999999999999999999 99
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 130 ~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 130 QLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp HHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred HHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999996
No 27
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=7.4e-46 Score=263.91 Aligned_cols=119 Identities=50% Similarity=1.009 Sum_probs=116.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|++||.+||.+|++
T Consensus 32 l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~s 111 (215)
T 1tte_A 32 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQA 111 (215)
T ss_dssp CCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHH
T ss_pred ccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 112 LL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 112 LLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp HHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred HHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999964
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3.3e-45 Score=249.38 Aligned_cols=117 Identities=35% Similarity=0.822 Sum_probs=115.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCc-ccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l-~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++| .++|+|+++|.+||.+|++
T Consensus 34 l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ 112 (155)
T 1wzv_A 34 VLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNV 112 (155)
T ss_dssp TTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHH
Confidence 579999999 99999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||+
T Consensus 113 ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 113 LVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp HHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred HHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999996
No 29
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=9.3e-45 Score=263.48 Aligned_cols=119 Identities=48% Similarity=0.934 Sum_probs=116.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++
T Consensus 89 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ 168 (253)
T 3e46_A 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 168 (253)
T ss_dssp SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 169 ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 169 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp HHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred HhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999975
No 30
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=9.9e-45 Score=249.70 Aligned_cols=117 Identities=37% Similarity=0.688 Sum_probs=113.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCccc------ccCCcccHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE------QWSPALTISKVL 74 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~------~W~p~~~i~~il 74 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. +|+|+++|.+||
T Consensus 44 l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl 122 (167)
T 3fn1_B 44 LHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122 (167)
T ss_dssp TTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHH
T ss_pred ceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHH
Confidence 56899998 89999999999999999999999999999999999999999999999999975 799999999999
Q ss_pred HHHHHhhcC-CCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 75 LSICSLLTD-PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 75 ~~i~~ll~~-p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
.+|+++|.+ |++++|+|.||+++|++|+++|.++||+|+++||+
T Consensus 123 ~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp HHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999 69999999999999999999999999999999996
No 31
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-45 Score=251.04 Aligned_cols=118 Identities=31% Similarity=0.762 Sum_probs=115.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccC-CCceeccCcccccCCcccHHHHHHHH-H
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSI-C 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~-~G~vc~~~l~~~W~p~~~i~~il~~i-~ 78 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.++|+|+++|.+||.+| +
T Consensus 37 l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~ 116 (171)
T 1yf9_A 37 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLP 116 (171)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHH
T ss_pred ceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999995 99999999999999999999999997 7
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 79 SLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 79 ~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+||.+|++++|+|.+|+++|++|++.|.++||+|+++||+
T Consensus 117 ~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 117 QLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp HHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999996
No 32
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=8.1e-45 Score=247.25 Aligned_cols=118 Identities=42% Similarity=0.963 Sum_probs=112.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-cccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|. ++|+|++++.+||.+|++
T Consensus 32 l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ 110 (154)
T 1c4z_D 32 LLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIA 110 (154)
T ss_dssp SSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHH
T ss_pred hheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHH
Confidence 579999998 999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred hhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 80 LLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 80 ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
+|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 111 ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 111 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp HHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred HHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999963
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=4.6e-44 Score=247.43 Aligned_cols=117 Identities=32% Similarity=0.743 Sum_probs=114.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcc-cccccccc-CCCceeccCcc-cccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT-KVFHPNIN-SNGSICLDILK-EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~-~i~Hpnv~-~~G~vc~~~l~-~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.| ++|||||+ .+|.||+++|. ++|+|+++|.+||.+|
T Consensus 47 l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si 126 (172)
T 2y9m_A 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAV 126 (172)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHH
T ss_pred hhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHH
Confidence 579999999999999999999999999999999999999999 99999996 79999999998 8999999999999999
Q ss_pred HHhhcCCCCCCCCcHHHHHHHHH-CHHHHHHHHHHHHHHhc
Q 033413 78 CSLLTDPNPDDPLVPEIAHMYKT-DRNKYETTARSWTQKYA 117 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~a~~~~~~-~~~~f~~~~~~~~~~~a 117 (119)
+++|.+|++++|+|.+|+++|++ |+++|.++||+|+++++
T Consensus 127 ~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~~~ 167 (172)
T 2y9m_A 127 WRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAERE 167 (172)
T ss_dssp HHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999987
No 34
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.2e-43 Score=247.44 Aligned_cols=118 Identities=36% Similarity=0.833 Sum_probs=113.6
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-------------cccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||+++|. ++|+|+
T Consensus 37 l~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~ 116 (183)
T 3rz3_A 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPT 116 (183)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTSBBCCTTC--------------CCCCTT
T ss_pred hhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999996 889999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHH------CHHHHHHHHHHHHHHhcC
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT------DRNKYETTARSWTQKYAM 118 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~------~~~~f~~~~~~~~~~~a~ 118 (119)
++|++||.+|+++|.+||+++|+|.+|+++|++ |+++|+++||+++++++.
T Consensus 117 ~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~~~v~~s~~ 173 (183)
T 3rz3_A 117 QNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKV 173 (183)
T ss_dssp CCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 789999999999999863
No 35
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-43 Score=242.14 Aligned_cols=114 Identities=34% Similarity=0.748 Sum_probs=111.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 34 l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~l 112 (160)
T 1y8x_A 34 LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYL 112 (160)
T ss_dssp TTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHH
T ss_pred cceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHH
Confidence 57999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 115 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 115 (119)
|.+|++++|+|.+|+++|++|+++|.++||++++.
T Consensus 113 l~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 113 FLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp HHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred HhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999874
No 36
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-43 Score=244.07 Aligned_cols=114 Identities=35% Similarity=0.698 Sum_probs=110.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccc-cCCCceeccCcc--cccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI-NSNGSICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv-~~~G~vc~~~l~--~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||| +.+|.||+++|. ++|+|+++|++||.+|
T Consensus 52 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI 131 (169)
T 1yrv_A 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLAL 131 (169)
T ss_dssp SCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHH
T ss_pred cccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999 789999999998 8999999999999999
Q ss_pred HHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 033413 78 CSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 115 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 115 (119)
+++|.+|++++|+|.+|+++|++|+++|+++ ++++++
T Consensus 132 ~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 132 QVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp HHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred HHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 9999999999999999999999999999999 888764
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-43 Score=243.87 Aligned_cols=114 Identities=33% Similarity=0.716 Sum_probs=111.5
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|.+||.+|+++
T Consensus 54 l~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~l 132 (180)
T 2nvu_C 54 LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYL 132 (180)
T ss_dssp TTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHH
Confidence 57999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHH
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQK 115 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~ 115 (119)
|.+|++++|+|.+|+++|++|++.|.++||++++.
T Consensus 133 l~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 133 FLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred HhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999874
No 38
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.3e-43 Score=245.22 Aligned_cols=112 Identities=40% Similarity=0.957 Sum_probs=81.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcc-------------cccCCc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPA 67 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~-------------~~W~p~ 67 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+||+++|. ++|+|+
T Consensus 47 l~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~ 126 (172)
T 2awf_A 47 LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPI 126 (172)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTT
T ss_pred ccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999996 689999
Q ss_pred ccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHH-HHHHHHHHH
Q 033413 68 LTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRN-KYETTARSW 112 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~-~f~~~~~~~ 112 (119)
++|++||.+|+++|.+|++++|+|.+|+++|++|++ +|+++||+|
T Consensus 127 ~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 127 HTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp CCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 999999999999999999999999999999999999 999999986
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2e-42 Score=265.32 Aligned_cols=119 Identities=83% Similarity=1.438 Sum_probs=116.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+++|.||+++|.++|+|++|+.+||.+|+++
T Consensus 32 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~l 111 (399)
T 4ddg_A 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSL 111 (399)
T ss_dssp EEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCCeEeCcccccCCCccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 033413 81 LTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 119 (119)
Q Consensus 81 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 119 (119)
|.+|++++|+|.+|+++|++|++.|.++||+|+++||++
T Consensus 112 l~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 112 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp HHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred HcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999974
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=5.6e-42 Score=240.16 Aligned_cols=113 Identities=32% Similarity=0.662 Sum_probs=110.1
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHhhc
Q 033413 3 HWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~ 82 (119)
+|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|+++|++||.+|+++|.
T Consensus 65 ~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~ 143 (190)
T 3o2u_A 65 KLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFL 143 (190)
T ss_dssp EEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHh
Confidence 8999997 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHh
Q 033413 83 DPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKY 116 (119)
Q Consensus 83 ~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~ 116 (119)
+|++++|+|.+|+++|++|+++|.++||+|++..
T Consensus 144 ~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 144 EPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp SCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred CCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999654
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.1e-39 Score=224.51 Aligned_cols=110 Identities=27% Similarity=0.653 Sum_probs=104.0
Q ss_pred CeEEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHH-HH
Q 033413 1 MFHWQATIMGPPDSPYA--GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLL-SI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~--gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~-~i 77 (119)
|++|+++|.||++|||+ ||.|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.++|+|++++.++|. .|
T Consensus 49 l~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l 128 (167)
T 4ds2_A 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVL 128 (167)
T ss_dssp TTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHH
T ss_pred ccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHH
Confidence 57999999999999999 9999999999999999999999999999999999999999999999999999999754 56
Q ss_pred HHhhcC--CCCCCCCcHHHHHHHHHCHHHHHHHHH
Q 033413 78 CSLLTD--PNPDDPLVPEIAHMYKTDRNKYETTAR 110 (119)
Q Consensus 78 ~~ll~~--p~~~~~~n~~a~~~~~~~~~~f~~~~~ 110 (119)
++++.. |++++|+|.||+++|++|+++|+++||
T Consensus 129 ~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 129 DRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp HHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred HHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 777764 799999999999999999999999998
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=239.38 Aligned_cols=118 Identities=36% Similarity=0.675 Sum_probs=111.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccc-----cccccccCCCceeccCcc-------cccCCcc
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILK-------EQWSPAL 68 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~-----i~Hpnv~~~G~vc~~~l~-------~~W~p~~ 68 (119)
|+.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+ +|||||+.+|.||+++|. ++|+|++
T Consensus 109 l~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~ 188 (323)
T 3ceg_A 109 LDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQT 188 (323)
T ss_dssp TTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTT
T ss_pred ccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCc
Confidence 5789999999999999999999999999999999999999998 999999999999999996 6899999
Q ss_pred -cHHHHHHHHHHhhc--CCCCCCCCcHHH--HHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 69 -TISKVLLSICSLLT--DPNPDDPLVPEI--AHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 69 -~i~~il~~i~~ll~--~p~~~~~~n~~a--~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
+|.+||.+|++||. +|++++|+|.++ +.++++|++.|.++|++|+++||+
T Consensus 189 stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 189 SSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp CCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 89999999999997 667799999987 678999999999999999999996
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=6.9e-39 Score=218.32 Aligned_cols=100 Identities=27% Similarity=0.562 Sum_probs=94.1
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCce---eccCcccccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI---CLDILKEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~v---c~~~l~~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+|+| |+++|. +|+|+++|++||.+|
T Consensus 54 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI 132 (156)
T 2q0v_A 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISL 132 (156)
T ss_dssp CCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHH
T ss_pred ceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999 888886 599999999999999
Q ss_pred HHhhcCCCCCCCCcHHHHHHHHHC
Q 033413 78 CSLLTDPNPDDPLVPEIAHMYKTD 101 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~a~~~~~~~ 101 (119)
+++|.+|++++++|++|+.+|++|
T Consensus 133 ~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 133 RQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp HHHTTSTTTTTCCCCCTTCBC---
T ss_pred HHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999999999999998765
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=7.6e-37 Score=208.87 Aligned_cols=95 Identities=31% Similarity=0.566 Sum_probs=91.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccccccccc-CCCceeccCcc--cccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~-~~G~vc~~~l~--~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|+||+++|. ++|+|+++|++||.+|
T Consensus 58 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI 137 (160)
T 2a4d_A 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 137 (160)
T ss_dssp CCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHH
T ss_pred ceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 69999999997 8999999999999999
Q ss_pred HHhhc-CCCCCCCCcHHHH
Q 033413 78 CSLLT-DPNPDDPLVPEIA 95 (119)
Q Consensus 78 ~~ll~-~p~~~~~~n~~a~ 95 (119)
+++|. +||.++|+|.||+
T Consensus 138 ~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 138 RRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp HHHHTSTTTTTCCCCCTTC
T ss_pred HHHHccCCCCCCCCChhhc
Confidence 99995 6999999999986
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=8.3e-38 Score=209.27 Aligned_cols=97 Identities=30% Similarity=0.637 Sum_probs=91.9
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCC-Cce--eccCcccccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSI--CLDILKEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~-G~v--c~~~l~~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+.+ |+| |++++. +|+|++++++||.+|
T Consensus 39 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i 117 (138)
T 1jat_B 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDL 117 (138)
T ss_dssp CCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHH
T ss_pred ceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999985 999 899885 899999999999999
Q ss_pred HHhhcCCCCCCCCcHHHHHHH
Q 033413 78 CSLLTDPNPDDPLVPEIAHMY 98 (119)
Q Consensus 78 ~~ll~~p~~~~~~n~~a~~~~ 98 (119)
+++|.+|++++++|++|+.+|
T Consensus 118 ~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 118 RKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp HHHHTSHHHHTSCCCCTTCBC
T ss_pred HHHHcCCCCCCCCCcchhhcC
Confidence 999999999999999987653
No 46
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-36 Score=197.34 Aligned_cols=87 Identities=39% Similarity=0.736 Sum_probs=80.4
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccc-ccccccCCCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i-~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|+||+++|.++|+|++++++||.+|++
T Consensus 35 l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ 114 (125)
T 2fo3_A 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIIS 114 (125)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred hhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhcCCCCC
Q 033413 80 LLTDPNPD 87 (119)
Q Consensus 80 ll~~p~~~ 87 (119)
+|.+|+.+
T Consensus 115 ll~~p~~~ 122 (125)
T 2fo3_A 115 MLSSAKEK 122 (125)
T ss_dssp HHC-----
T ss_pred HHhCcccc
Confidence 99998764
No 47
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=209.24 Aligned_cols=95 Identities=31% Similarity=0.566 Sum_probs=91.2
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccccccccc-CCCceeccCcc--cccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILK--EQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~-~~G~vc~~~l~--~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+ .+|.||+++|. ++|+|+++|++||.+|
T Consensus 68 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI 147 (170)
T 2hlw_A 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQEL 147 (170)
T ss_dssp CCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHH
T ss_pred ceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999 79999999997 8999999999999999
Q ss_pred HHhhc-CCCCCCCCcHHHH
Q 033413 78 CSLLT-DPNPDDPLVPEIA 95 (119)
Q Consensus 78 ~~ll~-~p~~~~~~n~~a~ 95 (119)
+++|. .||.++|+|.||+
T Consensus 148 ~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 148 RRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp HHHHHSTTTSSSCCCSSCC
T ss_pred HHHHccCCCCCCCCCcccc
Confidence 99997 4899999999976
No 48
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.9e-35 Score=196.46 Aligned_cols=86 Identities=38% Similarity=0.743 Sum_probs=83.3
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEcccc-ccccccCCCceeccCcccccCCcccHHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICS 79 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i-~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ 79 (119)
|++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||+.+|+||+++|.++|+|++++.+||.+|++
T Consensus 49 l~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~s 128 (136)
T 2h2y_A 49 IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIIS 128 (136)
T ss_dssp TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHH
T ss_pred ccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred hhcCCCC
Q 033413 80 LLTDPNP 86 (119)
Q Consensus 80 ll~~p~~ 86 (119)
+|.+|+.
T Consensus 129 ll~~p~~ 135 (136)
T 2h2y_A 129 MLSSAKE 135 (136)
T ss_dssp HHSSSCC
T ss_pred HHhCcCc
Confidence 9999864
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-34 Score=192.43 Aligned_cols=82 Identities=43% Similarity=0.870 Sum_probs=80.0
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccc--cccccCCCceeccCcccccCCcccHHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSIC 78 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~--Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~ 78 (119)
|++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++ ||||+.+|+||+++|.++|+|+++|++||.+|+
T Consensus 53 l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~ 132 (136)
T 2a7l_A 53 ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132 (136)
T ss_dssp CEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHH
T ss_pred cceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred Hhhc
Q 033413 79 SLLT 82 (119)
Q Consensus 79 ~ll~ 82 (119)
++|.
T Consensus 133 slL~ 136 (136)
T 2a7l_A 133 SMLS 136 (136)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-32 Score=191.37 Aligned_cols=105 Identities=25% Similarity=0.597 Sum_probs=83.7
Q ss_pred CeEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCc---ccccCCcccHHHHHHHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSI 77 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l---~~~W~p~~~i~~il~~i 77 (119)
|++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||+|+.+|.||+++| .++|+|+++|.+||.+|
T Consensus 43 l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si 120 (187)
T 2f4w_A 43 ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGL 120 (187)
T ss_dssp EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTSCBC----------CCTTCCHHHHHHHH
T ss_pred cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHH
Confidence 5799999999999999999999999999999999999999999 999999999999999 68999999999999999
Q ss_pred HHhhcCCCCCCC---CcHHHHHHHHHCHHHHHH
Q 033413 78 CSLLTDPNPDDP---LVPEIAHMYKTDRNKYET 107 (119)
Q Consensus 78 ~~ll~~p~~~~~---~n~~a~~~~~~~~~~f~~ 107 (119)
+++|.+|+++.. ......+.+..+...|..
T Consensus 121 ~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~ 153 (187)
T 2f4w_A 121 LSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNL 153 (187)
T ss_dssp HHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcccccChHHHHHHHHHHHHHhh
Confidence 999999988633 233334444444444433
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.98 E-value=2.3e-34 Score=200.94 Aligned_cols=109 Identities=23% Similarity=0.554 Sum_probs=96.6
Q ss_pred CeEEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCeeEEccccccc-cccCCCceeccCcc-cccCC
Q 033413 1 MFHWQATIMGP-PDSPYAG-----------GVFLVTIHFPPDYPFKPPKVAFRTKVFHP-NINSNGSICLDILK-EQWSP 66 (119)
Q Consensus 1 l~~w~~~i~Gp-~~tpy~g-----------g~f~~~l~fp~~yP~~pP~i~f~~~i~Hp-nv~~~G~vc~~~l~-~~W~p 66 (119)
|++|+++|.|| ++|||+| |.|+++|.||++||++||+|+|.+++||| ||+.+|.||+++|. ++|+|
T Consensus 59 l~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP 138 (186)
T 1zuo_A 59 LYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSS 138 (186)
T ss_dssp EEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCT
T ss_pred cceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCC
Confidence 57999999998 9999998 89999999999999999999999999999 69999999999997 78999
Q ss_pred cccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 67 ALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 67 ~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
+++|++||.+|+++|.+|+... .|+.+++.|.+++++++.+.+
T Consensus 139 ~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~~~~~ 181 (186)
T 1zuo_A 139 AYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQSYNSI 181 (186)
T ss_dssp TSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHHHHHH
Confidence 9999999999999999986532 344456777777777777654
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.90 E-value=1.6e-24 Score=147.18 Aligned_cols=75 Identities=19% Similarity=0.336 Sum_probs=69.7
Q ss_pred CeEEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEccc-cccccccCCCceeccCc-cc---ccC
Q 033413 1 MFHWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK-VFHPNINSNGSICLDIL-KE---QWS 65 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg----------~f~~~l~fp~~yP~~pP~i~f~~~-i~Hpnv~~~G~vc~~~l-~~---~W~ 65 (119)
++.|.+++.||.||+|+|| .|.+++.||++||.+||+|+|.+. ++|||||.+|+||++++ .. .|+
T Consensus 55 ~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~ 134 (172)
T 2z6o_A 55 DNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNV 134 (172)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHT
T ss_pred cceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCCcEechhhccccccccC
Confidence 4689999999999999999 999999999999999999999997 99999999999999999 43 566
Q ss_pred CcccHHHHHH
Q 033413 66 PALTISKVLL 75 (119)
Q Consensus 66 p~~~i~~il~ 75 (119)
|.++|.++|.
T Consensus 135 P~~~IahiL~ 144 (172)
T 2z6o_A 135 PKFGLAHLMA 144 (172)
T ss_dssp TSCCHHHHHH
T ss_pred CccCHHHHHh
Confidence 9999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=2.2e-20 Score=127.30 Aligned_cols=85 Identities=32% Similarity=0.556 Sum_probs=74.3
Q ss_pred EEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEccc----------cc-cccccCCCceeccCcccccCC-c
Q 033413 3 HWQATIMGPPDSPYAGGV---FLVTIHFPPDYPFKPPKVAFRTK----------VF-HPNINSNGSICLDILKEQWSP-A 67 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg~---f~~~l~fp~~yP~~pP~i~f~~~----------i~-Hpnv~~~G~vc~~~l~~~W~p-~ 67 (119)
++-..+.|.-.++|+|+. |.+.|.||++||++||.|.|.++ ++ |||||++|+||+++| ++|+| +
T Consensus 62 ~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~ 140 (162)
T 3r3q_A 62 QLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAA 140 (162)
T ss_dssp EEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG-GSCCGGG
T ss_pred heEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCccc-ccCCCCc
Confidence 345566666668999999 88999999999999999988651 77 999999999999999 57999 5
Q ss_pred ccHHHHHHHHHHhhcCCCCCC
Q 033413 68 LTISKVLLSICSLLTDPNPDD 88 (119)
Q Consensus 68 ~~i~~il~~i~~ll~~p~~~~ 88 (119)
.++.++|.+|+++|.+|+++.
T Consensus 141 s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 141 MNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CCHHHHHHHHHHTTSCCCCCC
T ss_pred CcHHHHHHHHHHHhcCCCCCC
Confidence 799999999999999999874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.67 E-value=9.9e-18 Score=111.74 Aligned_cols=63 Identities=24% Similarity=0.506 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEccc-cccccccCCCceeccCcccccCCcc
Q 033413 3 HWQATIMGPPDSPYAGG----------VFLVTIHFPPDYPFKPPKVAFRTK-VFHPNINSNGSICLDILKEQWSPAL 68 (119)
Q Consensus 3 ~w~~~i~Gp~~tpy~gg----------~f~~~l~fp~~yP~~pP~i~f~~~-i~Hpnv~~~G~vc~~~l~~~W~p~~ 68 (119)
.|...+.||.||+|.|+ .|++++.||.+||.+||+|+|.+. .+||++|.+|+||+++. |+|.+
T Consensus 59 dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 59 HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence 59999999999999999 899999999999999999999995 89999999999999986 65543
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.64 E-value=3.7e-16 Score=104.77 Aligned_cols=77 Identities=22% Similarity=0.519 Sum_probs=67.8
Q ss_pred CeEEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEccc------cccccccCCCceeccCcccccCC-cccHH
Q 033413 1 MFHWQATIMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK------VFHPNINSNGSICLDILKEQWSP-ALTIS 71 (119)
Q Consensus 1 l~~w~~~i~Gp~~tpy~gg~f~--~~l~fp~~yP~~pP~i~f~~~------i~Hpnv~~~G~vc~~~l~~~W~p-~~~i~ 71 (119)
|++|.++|. .+|+|+.|. +.|.||++||++||.| |.++ ..|||||.+|+||++.|. +|++ ..+|.
T Consensus 53 LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-~W~~~~snL~ 126 (146)
T 3obq_A 53 LMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHPQSDLL 126 (146)
T ss_dssp EEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH-TCCTTTCCHH
T ss_pred EEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc-ccCCCCCCHH
Confidence 468899997 579999999 4999999999999999 6555 489999999999999994 5998 77999
Q ss_pred HHHHHHHHhhcC
Q 033413 72 KVLLSICSLLTD 83 (119)
Q Consensus 72 ~il~~i~~ll~~ 83 (119)
+++..|++.|.+
T Consensus 127 ~ll~~l~~~F~~ 138 (146)
T 3obq_A 127 GLIQVMIVVFGD 138 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.027 Score=35.83 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.3
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEcc
Q 033413 18 GGVFLVTIHFPPDYPFKPPKVAFRT 42 (119)
Q Consensus 18 gg~f~~~l~fp~~yP~~pP~i~f~~ 42 (119)
.-.+.+.+.+|++||.+||.|...+
T Consensus 54 ~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 54 TVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred ceeEEEEEEeCCCCCCCCceEEEEc
Confidence 3468899999999999999997654
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.56 E-value=0.13 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCCCCCCeeEEcc
Q 033413 20 VFLVTIHFPPDYPFKPPKVAFRT 42 (119)
Q Consensus 20 ~f~~~l~fp~~yP~~pP~i~f~~ 42 (119)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 78999999999999999998654
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.099 Score=33.61 Aligned_cols=24 Identities=21% Similarity=0.696 Sum_probs=21.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEcc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFRT 42 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~~ 42 (119)
-.+.+.+.+|++||.++|.|...+
T Consensus 62 ~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 62 SSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CEEEEEEECCSSTTSSCCEEEEEC
T ss_pred eEEEEEEECCCCCCCCCCeEEEec
Confidence 468899999999999999998754
No 59
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.3 Score=30.86 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFR 41 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~ 41 (119)
-.+.+.+.+|++||..+|.|...
T Consensus 56 ~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 56 IPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECSSTTSSCCCCCCC
T ss_pred eEEEEEEECCCCCCCCCCeEEEE
Confidence 46889999999999999998654
No 60
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.21 E-value=0.17 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.700 Sum_probs=21.6
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
-.+.+.+.+|++||..+|.|...+.
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 4688999999999999999987753
No 61
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.85 E-value=0.21 Score=32.71 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCCCCCCeeEEccc
Q 033413 20 VFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 20 ~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
.+.+.+.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999986654
No 62
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=93.15 E-value=0.38 Score=32.95 Aligned_cols=52 Identities=19% Similarity=0.440 Sum_probs=39.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEccccccccccCCCceeccCcccccCCcccHHHHHHHHHHhhc
Q 033413 17 AGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP~~pP~i~f~~~i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~ 82 (119)
.|....++|.++.+||.++|.+.-.-|. |. .-.|++..++.+++.+.+..+.
T Consensus 36 ~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 36 SGREHLITLKLKAKYPAESPDYFVDFPV--PF------------CASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp TSCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------ccccCCCccHHHHHHHHHHHHH
Confidence 4577889999999999999988655443 11 1479999999988887776664
No 63
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=92.83 E-value=0.067 Score=34.30 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.3
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEc
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFR 41 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~ 41 (119)
-.+.+.+.+|++||.++|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46889999999999999999874
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=91.94 E-value=0.029 Score=35.28 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 84 PNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 84 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
.....|.+.+.|++|+++++.|.+.|+.|+.-+|.
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 34567899999999999999999999999977663
No 65
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=56.32 E-value=38 Score=21.92 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=31.9
Q ss_pred CeEEE--EEEeCCCCCCCC-CcEEEEEEEcCCCCCCCCCeeEEccccc
Q 033413 1 MFHWQ--ATIMGPPDSPYA-GGVFLVTIHFPPDYPFKPPKVAFRTKVF 45 (119)
Q Consensus 1 l~~w~--~~i~Gp~~tpy~-gg~f~~~l~fp~~yP~~pP~i~f~~~i~ 45 (119)
+.+|. +.+.|+.|.... .-+=++...+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 57898 899999888664 4566788888898874 7766665544
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=46.18 E-value=62 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=29.6
Q ss_pred eEEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 2 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 2 ~~w~~~i~Gp~~tpy~gg~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
.+|.+.+.|+.+.-...-+=++...+.+.||. |.-.+..+
T Consensus 33 H~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 33 HLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp EEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred EEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 58999999987755555677788999999975 55555444
No 67
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=40.54 E-value=28 Score=19.39 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=22.2
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 91 VPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 91 n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
.+||...+++-+-..+.+||.-+++||.
T Consensus 7 t~EAe~~LkkIP~FVR~kvrr~tE~~Ar 34 (63)
T 2kru_A 7 TAEAEKMLGKVPFFVRKKVRKNTDNYAR 34 (63)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4577777777777778889999999983
No 68
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=35.57 E-value=48 Score=19.05 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHhhcCCCCCCCCcHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 77 ICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 77 i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
|+.|+..-++...+.+++..+..+=-+.|...+-..+.+.|
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lA 51 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLA 51 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433556678888888888888889988888777776
No 69
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=35.25 E-value=37 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYPF-----KPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP~-----~pP~i~f~ 41 (119)
+.|.|.|+-..|--||. .||-|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46889999999999998 78877664
No 70
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=34.06 E-value=11 Score=16.69 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=8.7
Q ss_pred CCCCCeeEEccccccc
Q 033413 32 PFKPPKVAFRTKVFHP 47 (119)
Q Consensus 32 P~~pP~i~f~~~i~Hp 47 (119)
|...|.-.|..+.|||
T Consensus 4 pmtlpenyfserpyhp 19 (26)
T 2jrw_A 4 PMTLPENYFSERPYHP 19 (26)
T ss_dssp CCCCSSSSCCSSSCCS
T ss_pred ccccchhhcccCCCCC
Confidence 3344444566666665
No 71
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=31.73 E-value=55 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+..+..+|++.|.++|++...++.
T Consensus 278 ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 278 DEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777788999999999999988774
No 72
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=31.60 E-value=27 Score=19.39 Aligned_cols=27 Identities=15% Similarity=0.040 Sum_probs=20.5
Q ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 91 VPEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 91 n~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.+||...+++-+-..+.+||.-+++||
T Consensus 6 t~EAe~~LkkIP~FVR~kvrr~tE~~A 32 (62)
T 2l09_A 6 TSEAKTKLKNIPFFARSQAKARIEQLA 32 (62)
T ss_dssp CHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356666777777667788999999988
No 73
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=31.54 E-value=56 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+..+..+|++.|.++|++...++.
T Consensus 277 ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 277 DEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777788999999999999988774
No 74
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=31.08 E-value=57 Score=25.75 Aligned_cols=26 Identities=8% Similarity=-0.041 Sum_probs=22.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHhc
Q 033413 92 PEIAHMYKTDRNKYETTARSWTQKYA 117 (119)
Q Consensus 92 ~~a~~~~~~~~~~f~~~~~~~~~~~a 117 (119)
.|+..+..+|++.|.++|++...++.
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 56777788999999999999988774
No 75
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=30.37 E-value=42 Score=21.01 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=21.1
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHh
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSL 80 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~l 80 (119)
-||++|+|-...+...+....++.+++..|++|
T Consensus 124 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 367788886554444444445677888777664
No 76
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=30.34 E-value=27 Score=18.13 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred CcHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 033413 90 LVPEIAHMYKTDRNKYETTARSWTQKYAM 118 (119)
Q Consensus 90 ~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 118 (119)
.+..+....+.|+..-...+|.-+.+|++
T Consensus 18 qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 34567777899999998888888888875
No 77
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=28.73 E-value=33 Score=21.63 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=21.1
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHhh
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll 81 (119)
-||++|+|-............+..+++..|+.++
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 3457888876555444444456778888777654
No 78
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=28.47 E-value=57 Score=20.66 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=21.8
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHhhc
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSLLT 82 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~ 82 (119)
-||++|+|-.........-.-++.++|..|+.+..
T Consensus 126 lID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 126 IVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred EECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 45678888654443333333467888888877653
No 79
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=28.12 E-value=66 Score=17.62 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHCHHHHHHHH
Q 033413 90 LVPEIAHMYKTDRNKYETTA 109 (119)
Q Consensus 90 ~n~~a~~~~~~~~~~f~~~~ 109 (119)
.|++.+.+..+|.+.|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 57889999999999998875
No 80
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=26.40 E-value=47 Score=20.61 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=22.1
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHhh
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSLL 81 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll 81 (119)
-||++|+|-...........-++.+++..|+.++
T Consensus 133 lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 133 VLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp EECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred EEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 3457888876655444444456778888887765
No 81
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=25.75 E-value=31 Score=23.38 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=34.3
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEccc--cccccccCCCceeccCcccccCCcccHHHHHHHH
Q 033413 19 GVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSI 77 (119)
Q Consensus 19 g~f~~~l~fp~~yP~~pP~i~f~~~--i~Hpnv~~~G~vc~~~l~~~W~p~~~i~~il~~i 77 (119)
..-.+.|.+....|...|.++|.-+ ..+|.-. +++---..|++..++.+=|..|
T Consensus 124 ~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~-----~~~~nl~~Wd~~~~i~~NL~~i 179 (186)
T 3zqs_A 124 NNVSINIEVDPRHPTMLPECFFLGADHVVKPLGI-----KLSRNIHLWDPENSVLQNLKDV 179 (186)
T ss_dssp TTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHH-----HHHHHGGGCCTTSCHHHHHHHH
T ss_pred CCcEEEEEECCCCCCcCCceEEECChHHHHHHHH-----HHhhhHhhcCCCCCHHHHHHHH
Confidence 3366889999999999999999854 2222111 1100015799998876655544
No 82
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=25.68 E-value=67 Score=18.26 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=19.2
Q ss_pred CCcHHHHHHHHHCHHHHHHHHH
Q 033413 89 PLVPEIAHMYKTDRNKYETTAR 110 (119)
Q Consensus 89 ~~n~~a~~~~~~~~~~f~~~~~ 110 (119)
..|++.+++...|.+.|.+...
T Consensus 38 ~~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 38 RENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHH
T ss_pred hHCHHHHHHHHHCHHHHHHHHc
Confidence 3688999999999999998874
No 83
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=24.71 E-value=1.2e+02 Score=18.11 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEccc
Q 033413 18 GGVFLVTIHFPPDYPFKPPKVAFRTK 43 (119)
Q Consensus 18 gg~f~~~l~fp~~yP~~pP~i~f~~~ 43 (119)
+..+...+.|+..|+. +|.|.+.-.
T Consensus 28 ~R~~~~~V~F~~~F~~-~P~V~v~l~ 52 (101)
T 2ccv_A 28 TRELAKNITFASPYCR-PPVVLLSIT 52 (101)
T ss_dssp CEEEEEEEECSSCCSS-CCEEEEEEE
T ss_pred ceEEEEEeEeCcccCC-CCEEEEEeE
Confidence 3467888999999995 999877533
No 84
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=23.34 E-value=89 Score=19.33 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCCCCCcEEEEEEEcCC
Q 033413 4 WQATIMGPPDSPYAGGVFLVTIHFPP 29 (119)
Q Consensus 4 w~~~i~Gp~~tpy~gg~f~~~l~fp~ 29 (119)
.|+.+.|.+..+=+|..+.+.|.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 57888888888888999999999864
No 85
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=23.11 E-value=62 Score=22.29 Aligned_cols=37 Identities=0% Similarity=-0.162 Sum_probs=25.0
Q ss_pred cccCCCceeccCcccccCCcccHHHHHHHHHHhhcCC
Q 033413 48 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDP 84 (119)
Q Consensus 48 nv~~~G~vc~~~l~~~W~p~~~i~~il~~i~~ll~~p 84 (119)
-||++|.|-...+.......-+..++|..|+.+....
T Consensus 142 vID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~ 178 (224)
T 3keb_A 142 LADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA 178 (224)
T ss_dssp EECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence 3557888876555444444456888888888876654
No 86
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=21.18 E-value=59 Score=17.52 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=11.5
Q ss_pred CCCCCcEEEEEEEcCCCCCC
Q 033413 14 SPYAGGVFLVTIHFPPDYPF 33 (119)
Q Consensus 14 tpy~gg~f~~~l~fp~~yP~ 33 (119)
+|=.|.. |+-.+|++||.
T Consensus 39 ~P~tGk~--fR~k~pddy~~ 56 (56)
T 3kxt_A 39 DPETGKY--FRHKLPDDYPI 56 (56)
T ss_dssp CTTTCCE--EEEECCTTCCC
T ss_pred CCCCCcE--eeeeCcCcCCC
Confidence 3444554 45678999984
No 87
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=20.62 E-value=47 Score=21.25 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=24.2
Q ss_pred CCCCeeEEc---cccccccccCCCceeccCccc
Q 033413 33 FKPPKVAFR---TKVFHPNINSNGSICLDILKE 62 (119)
Q Consensus 33 ~~pP~i~f~---~~i~Hpnv~~~G~vc~~~l~~ 62 (119)
..||.|.+. +.--|++|..+|.+|++++.+
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 578998885 345688999999999999854
No 88
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=20.47 E-value=56 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=21.0
Q ss_pred CCcEEEEEEEcCCCCC-------CCCCeeEEc
Q 033413 17 AGGVFLVTIHFPPDYP-------FKPPKVAFR 41 (119)
Q Consensus 17 ~gg~f~~~l~fp~~yP-------~~pP~i~f~ 41 (119)
+.|.|.|+-.+|--|| ..||-|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 5788999999999998 368888775
Done!