BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033414
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2
PE=2 SV=1
Length = 322
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 92/119 (77%)
Query: 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYM 60
MT D+DKL S GK AQYLCKIL+VY+ YH AY KGVYLHDP +L A PSLFTY
Sbjct: 204 MTADDKDKLASSKGKLAQYLCKILDVYYDYHLTAYEIKGVYLHDPATILAAFLPSLFTYT 263
Query: 61 EAVIRVQTSGITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMDS 119
E V RVQTSGITRGLTLLYN KRF E EWSDKP VKVAVTVDAPAV KL MDRLM+S
Sbjct: 264 EGVARVQTSGITRGLTLLYNNLKRFEEANEWSDKPTVKVAVTVDAPAVVKLIMDRLMES 322
>sp|Q6ZJ05|URH1_ORYSJ Probable uridine nucleosidase 1 OS=Oryza sativa subsp. japonica
GN=URH1 PE=2 SV=1
Length = 324
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%)
Query: 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYM 60
TD D +L S GKHAQ+LC + + Y +H ++ G++LHDP + V+P FT+
Sbjct: 206 FTDEDLLELRNSKGKHAQFLCDMCQFYRDWHAESDGFHGIFLHDPVSFTALVHPEYFTFK 265
Query: 61 EAVIRVQTSGITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLM 117
+ V+RV+T GI G TL+ K++ WS + VA TVD P V + LM
Sbjct: 266 KGVVRVETQGICTGHTLMDQGLKKWNSENPWSGYKPISVAWTVDVPNVLAFVKELLM 322
>sp|Q652Q8|URH2_ORYSJ Probable uridine nucleosidase 2 OS=Oryza sativa subsp. japonica
GN=URH2 PE=2 SV=1
Length = 337
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%)
Query: 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYM 60
TD D +L S GKHAQ+LC I + Y +H +Y ++LHDP + V+P FT+
Sbjct: 218 FTDKDMLELRNSKGKHAQFLCDICKFYRDWHVHSYGVDALFLHDPVSFTALVHPEYFTFK 277
Query: 61 EAVIRVQTSGITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAV 108
+ V+RV+T GI +G T + K++ W+ + VA TVD P V
Sbjct: 278 KGVVRVETQGICKGHTSMDMGLKKWNSDNPWTGYSPISVAWTVDVPKV 325
>sp|Q9SJM7|URH1_ARATH Uridine nucleosidase 1 OS=Arabidopsis thaliana GN=URH1 PE=1 SV=2
Length = 336
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYM 60
++D D +L GKH++ + + + Y +H + GVYLHDP + + V P LFTY
Sbjct: 218 LSDDDLLELGNCKGKHSKLISDMCKFYRDWHVKSDGVYGVYLHDPVSFVAVVRPDLFTYK 277
Query: 61 EAVIRVQTSGITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLM 117
+ V+RV+T GI G TL+ KR+ W + VA TVD V + +LM
Sbjct: 278 KGVVRVETQGICVGHTLMDQGLKRWNGSNPWVGYSPISVAWTVDVEGVLEYVKAKLM 334
>sp|Q324P5|RIHA_SHIBS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
boydii serotype 4 (strain Sb227) GN=rihA PE=3 SV=1
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T+ +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLTD--NKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7N9Q7|RIHA_ECOLU Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rihA PE=3
SV=1
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNASVMVDVDRQGFVDLLADRL 307
>sp|B4SYM0|RIHA_SALNS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
newport (strain SL254) GN=rihA PE=3 SV=1
Length = 311
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ +F YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFFEYHKDEKWGFIGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ F +KP V V VD L +RL
Sbjct: 261 VGVETQGKYTQGMTVV---DYYFLS----GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B1IYF7|RIHA_ECOLC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rihA PE=3
SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTSVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B5YQK2|RIHA_ECO5E Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O157:H7 (strain EC4115 / EHEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|Q8XBL8|RIHA_ECO57 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O157:H7 GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|Q8FJY8|RIHA_ECOL6 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rihA
PE=3 SV=2
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|A1A8R9|RIHA_ECOK1 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O1:K1 / APEC GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7MFR7|RIHA_ECO45 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7UKT4|RIHA_ECO27 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|P41409|RIHA_ECOLI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain K12) GN=rihA PE=1 SV=2
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTSVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|C4ZWD8|RIHA_ECOBW Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain K12 / MC4100 / BW2952) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTSVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|A8AJF8|RIHA_CITK8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rihA PE=3 SV=1
Length = 312
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRATGNPVSTIVAELLDFFLEYHKDEKWGFTGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V +D L +RL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDIDRQGFVDLLAERL 307
>sp|B2TU69|RIHA_SHIB3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rihA
PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|Q83LY1|RIHA_SHIFL Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
flexneri GN=rihA PE=3 SV=4
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVIVDVDRQGFVDLLADRL 307
>sp|Q0T6R1|RIHA_SHIF8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
flexneri serotype 5b (strain 8401) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVIVDVDRQGFVDLLADRL 307
>sp|B1LLA1|RIHA_ECOSM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain SMS-3-5 / SECEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B6I163|RIHA_ECOSE Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain SE11) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7L9J7|RIHA_ECO55 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain 55989 / EAEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|A7ZJ42|RIHA_ECO24 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|A7ZXS0|RIHA_ECOHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O9:H4 (strain HS) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|Q0TK29|RIHA_ECOL5 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7MRT1|RIHA_ECO81 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O81 (strain ED1a) GN=rihA PE=3 SV=1
Length = 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|Q8Z8H0|RIHA_SALTI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
typhi GN=rihA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 20 LCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTL 77
+ ++L+ +F YH D + G LHDP + + P +FT +E + V+T G T+G+T+
Sbjct: 216 VAELLDFFFEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTV 275
Query: 78 LYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ + +T +KP V V VD L +RL
Sbjct: 276 V-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|A9MUJ0|RIHA_SALPB Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rihA PE=3
SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 20 LCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTL 77
+ ++L+ +F YH D + G LHDP + + P +FT +E + V+T G T+G+T+
Sbjct: 216 VAELLDFFFEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTV 275
Query: 78 LYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ + +T +KP V V VD L +RL
Sbjct: 276 V-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|C0PW90|RIHA_SALPC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi C (strain RKS4594) GN=rihA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 20 LCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTL 77
+ ++L+ +F YH D + G LHDP + + P +FT +E + V+T G T+G+T+
Sbjct: 216 VAELLDFFFEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETKGKYTQGMTV 275
Query: 78 LYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ + +T +KP V V VD L +RL
Sbjct: 276 V-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Photobacterium
profundum GN=rihA PE=3 SV=1
Length = 310
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTY 59
+ D D +K+ N AQ ++L+ + YH D + +G LHDP + + P LF
Sbjct: 197 IMDEDIEKIRKINNPVAQVTAELLDFFMIYHRDPKWGFEGAPLHDPCTIAWLLEPELFAS 256
Query: 60 MEAVIRVQTSGI-TRGLTLL 78
+ + ++T G T G+T++
Sbjct: 257 INCWVGIETQGSHTLGMTVV 276
>sp|Q3Z4E1|RIHA_SHISS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
sonnei (strain Ss046) GN=rihA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G ++G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYSQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B7M5H8|RIHA_ECO8A Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O8 (strain IAI1) GN=rihA PE=3 SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G ++G+T++ + +T +KP V V VD L DRL
Sbjct: 261 VGVETQGKYSQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLADRL 307
>sp|B5R809|RIHA_SALG2 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rihA PE=3
SV=1
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD+ L +RL
Sbjct: 260 WVGVETKGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDSQGFVDLLAERL 307
>sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rihA PE=3 SV=1
Length = 312
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 DADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYME 61
D D ++ AQ + +L+ + YH D + G LHDP + + P LFT +
Sbjct: 199 DEDIARIRAIENPIAQCVADLLDFFILYHRDPKWGFTGAPLHDPCTIAWLLKPELFTAQQ 258
Query: 62 AVIRVQTSGI-TRGLTLL 78
A + ++T G T+G+T++
Sbjct: 259 AWVGIETKGEHTQGMTVV 276
>sp|B7NM03|RIHA_ECO7I Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B7LKV4|RIHA_ESCF3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rihA PE=3 SV=1
Length = 311
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 5 DRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAV 63
D ++ + + ++L+ + YH D + G LHDP + + P LFT +E
Sbjct: 201 DTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERW 260
Query: 64 IRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 261 VGVETQGKYTQGMTVV-----DYYYLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B5EZA2|RIHA_SALA4 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
agona (strain SL483) GN=rihA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B4TPY1|RIHA_SALSV Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
schwarzengrund (strain CVM19633) GN=rihA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B5BCD9|RIHA_SALPK Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi A (strain AKU_12601) GN=rihA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|Q5PM78|RIHA_SALPA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rihA PE=3
SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|Q8ZQY4|RIHA_SALTY Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rihA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B5FNA2|RIHA_SALDC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
dublin (strain CT_02021853) GN=rihA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B4TB65|RIHA_SALHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
heidelberg (strain SL476) GN=rihA PE=3 SV=1
Length = 311
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B5QVR2|RIHA_SALEP Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
enteritidis PT4 (strain P125109) GN=rihA PE=3 SV=1
Length = 311
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETKGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
>sp|B5XWV7|RIHA_KLEP3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Klebsiella
pneumoniae (strain 342) GN=rihA PE=3 SV=1
Length = 311
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + +YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRQIGNPVSTIVAELLDFFMAYHKDEKWGFDGAPLHDPCTIAWLLKPEIFTTIER 259
Query: 63 VIRVQTSG-ITRGLTLL 78
+ V+T G T+G+T++
Sbjct: 260 WVGVETEGKYTQGMTVV 276
>sp|A6T9S2|RIHA_KLEP7 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rihA PE=3 SV=1
Length = 311
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + +YH D + G LHDP + + P +FT +E
Sbjct: 200 ADIERFRQIGNPVSTIVAELLDFFMAYHKDEKWGFDGAPLHDPCTIAWLLKPEIFTTIER 259
Query: 63 VIRVQTSG-ITRGLTLL 78
+ V+T G T+G+T++
Sbjct: 260 WVGVETEGKYTQGMTVV 276
>sp|A4W829|RIHA_ENT38 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Enterobacter
sp. (strain 638) GN=rihA PE=3 SV=1
Length = 313
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHH-DAYNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ A + ++L+ + YH + + G LHDP + + P LFT ++
Sbjct: 200 ADVERFRAIGNPVATTVAELLDFFMEYHKAEKWGFHGAPLHDPCTIAWLLKPELFTTVDR 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP + V +D L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYSLT--GNKPNTTLMVDIDRQGFVDLLAERL 307
>sp|A9MKC6|RIHA_SALAR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rihA PE=3 SV=1
Length = 311
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 4 ADRDKLVCSNGKHAQYLCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEA 62
AD ++ + + ++L+ + YH D + G LHDP + + LFT +E
Sbjct: 200 ADIERFRAIGNPISTIVAELLDFFLEYHKDEKWGFTGAPLHDPCTIAWLLKAELFTTVER 259
Query: 63 VIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ V+T G T+G+T++ + +T +KP V V VD L +RL
Sbjct: 260 WVGVETQGKYTQGMTVV-----DYYFLT--GNKPNATVMVDVDREGFVDLLAERL 307
>sp|Q57RR6|RIHA_SALCH Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
choleraesuis (strain SC-B67) GN=rihA PE=3 SV=1
Length = 311
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 20 LCKILEVYFSYHHDA-YNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTL 77
+ ++L+ +F YH D + G LH P + + P +FT +E + V+T G T+G+T+
Sbjct: 216 VAELLDFFFEYHKDEKWGFVGAPLHAPCTIAWLLKPEIFTTVERWVGVETKGKYTQGMTV 275
Query: 78 LYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116
+ + +T +KP V V VD L +RL
Sbjct: 276 V-----DYYFLT--GNKPNATVMVDVDRQGFVDLLAERL 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,898,356
Number of Sequences: 539616
Number of extensions: 1557096
Number of successful extensions: 2901
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2807
Number of HSP's gapped (non-prelim): 110
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)