Query 033414
Match_columns 119
No_of_seqs 166 out of 1015
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 13:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 9.5E-28 2.1E-32 168.2 11.9 111 1-118 198-309 (311)
2 PRK09955 rihB ribonucleoside h 99.9 7.9E-27 1.7E-31 165.2 12.4 111 1-118 197-308 (313)
3 PLN02717 uridine nucleosidase 99.9 2.3E-26 4.9E-31 163.2 13.2 119 1-119 198-316 (316)
4 PRK10443 rihA ribonucleoside h 99.9 2.9E-25 6.4E-30 157.2 12.4 111 1-118 197-309 (311)
5 cd02653 nuc_hydro_3 NH_3: A su 99.9 1.6E-24 3.4E-29 154.0 12.4 111 1-118 198-308 (320)
6 cd02651 nuc_hydro_IU_UC_XIUA n 99.9 1.4E-23 3E-28 148.3 12.4 108 1-116 194-302 (302)
7 cd02649 nuc_hydro_CeIAG nuc_hy 99.9 1.4E-23 3.1E-28 148.3 10.8 105 1-113 200-306 (306)
8 PRK10768 ribonucleoside hydrol 99.9 6.1E-23 1.3E-27 145.1 11.8 106 1-118 196-302 (304)
9 cd02650 nuc_hydro_CaPnhB NH_hy 99.9 1.7E-22 3.7E-27 142.8 11.7 108 1-113 196-304 (304)
10 cd00455 nuc_hydro nuc_hydro: N 99.9 1.5E-21 3.3E-26 137.5 11.6 103 1-112 193-295 (295)
11 PTZ00313 inosine-adenosine-gua 99.9 2.7E-21 5.9E-26 137.8 12.2 105 1-117 218-324 (326)
12 cd02654 nuc_hydro_CjNH nuc_hyd 99.9 1.9E-21 4E-26 138.2 9.5 103 1-112 213-318 (318)
13 PF01156 IU_nuc_hydro: Inosine 99.8 2.4E-20 5.2E-25 132.2 10.9 108 1-118 200-311 (312)
14 cd02647 nuc_hydro_TvIAG nuc_hy 99.8 7.7E-20 1.7E-24 129.6 9.4 93 1-109 207-304 (312)
15 cd02648 nuc_hydro_1 NH_1: A su 99.7 3.5E-17 7.6E-22 117.3 8.6 77 6-82 252-349 (367)
16 KOG2938 Predicted inosine-urid 97.7 8.7E-05 1.9E-09 53.7 5.1 99 13-118 234-334 (350)
17 cd02652 nuc_hydro_2 NH_2: A su 92.3 0.14 3E-06 36.6 2.7 22 40-61 228-251 (293)
18 PF14372 DUF4413: Domain of un 69.1 12 0.00026 22.2 3.9 39 9-55 26-64 (101)
19 PF09281 Taq-exonuc: Taq polym 63.3 5.7 0.00012 25.0 1.7 25 33-57 78-102 (138)
20 PF12651 RHH_3: Ribbon-helix-h 53.6 28 0.00061 17.3 4.1 30 2-31 10-43 (44)
21 PRK07571 bidirectional hydroge 44.1 31 0.00067 22.7 2.9 46 1-46 52-97 (169)
22 PRK05988 formate dehydrogenase 42.4 28 0.0006 22.5 2.4 37 1-37 39-75 (156)
23 PF09832 DUF2059: Uncharacteri 38.7 63 0.0014 17.1 3.3 25 1-25 17-42 (64)
24 TIGR01958 nuoE_fam NADH-quinon 38.6 52 0.0011 20.9 3.2 37 1-37 32-68 (148)
25 PRK07539 NADH dehydrogenase su 35.0 69 0.0015 20.5 3.4 37 1-37 38-74 (154)
26 PF12419 DUF3670: SNF2 Helicas 34.4 44 0.00096 21.1 2.4 45 1-49 84-139 (141)
27 PF02406 MmoB_DmpM: MmoB/DmpM 30.9 97 0.0021 18.0 3.2 28 43-70 14-43 (87)
28 cd06128 DNA_polA_exo DEDDy 3'- 30.8 34 0.00073 21.3 1.4 16 41-56 78-93 (151)
29 cd08318 Death_NMPP84 Death dom 27.0 1.3E+02 0.0028 17.2 4.1 30 1-30 30-59 (86)
30 PF02807 ATP-gua_PtransN: ATP: 26.1 39 0.00085 19.1 1.0 30 1-30 14-43 (76)
31 PF01402 RHH_1: Ribbon-helix-h 25.5 86 0.0019 14.5 3.6 24 6-29 14-38 (39)
32 COG0554 GlpK Glycerol kinase [ 22.9 27 0.00058 27.0 -0.1 81 32-112 37-125 (499)
33 PF12401 DUF3662: Protein of u 21.3 31 0.00068 21.1 -0.0 28 1-28 59-86 (116)
34 cd08313 Death_TNFR1 Death doma 20.7 1.8E+02 0.0039 16.5 4.8 30 1-30 23-52 (80)
35 PF03038 Herpes_UL95: UL95 fam 20.4 2.8E+02 0.0062 20.6 4.7 36 14-53 148-183 (348)
36 cd08787 CARD_NOD2_1_CARD15 Cas 20.4 1.6E+02 0.0034 17.1 2.7 26 1-26 34-59 (87)
37 PRK12373 NADH dehydrogenase su 20.2 1.6E+02 0.0035 22.3 3.4 36 1-36 53-88 (400)
38 PF09604 Potass_KdpF: F subuni 20.0 69 0.0015 14.0 1.0 9 49-57 17-25 (25)
39 PF00633 HHH: Helix-hairpin-he 20.0 49 0.0011 15.0 0.5 19 2-20 9-27 (30)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=99.95 E-value=9.5e-28 Score=168.15 Aligned_cols=111 Identities=31% Similarity=0.500 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
+|++.++++++.+++.++++.++++||.++|+..+|..|+++|||||++|+++|++|++++++|+||+.| +|+|+|++|
T Consensus 198 ~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g~~~hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d 277 (311)
T COG1957 198 LTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDGAPLHDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVD 277 (311)
T ss_pred CCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEE
Confidence 4788999999999999999999999999999998899999999999999999999999999999999998 999999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+++. ++..+|++|+.++|.++|++++.++|.+
T Consensus 278 ~~~~-------~~~~~n~~v~~~vD~~~f~~~i~~~l~~ 309 (311)
T COG1957 278 WRGV-------LGKPPNAQVAVDVDVEGFLDLILEALAR 309 (311)
T ss_pred eccc-------CCCCCCeEEeeccCHHHHHHHHHHHHhc
Confidence 9853 4567999999999999999999999875
No 2
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=99.95 E-value=7.9e-27 Score=165.18 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
+|++++++|++.+++.++++.+++++|+++|.+.+|.+|+++|||+|++++++|++|++.+.+|+||+.| ++||||++|
T Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lhD~la~a~~~~P~l~~~~~~~v~Ve~~g~~t~G~tv~d 276 (313)
T PRK09955 197 CTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCD 276 (313)
T ss_pred cCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHcChhhEEEEEeeEEEEeCCCCCCceEEec
Confidence 5789999999989999999999999999998888889999999999999999999999999999999986 899999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+++. ++..+|++|++++|.++|+++|+++|..
T Consensus 277 ~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T PRK09955 277 ELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_pred cccc-------CCCCCCCEEeeecCHHHHHHHHHHHHHH
Confidence 7652 2456899999999999999999998853
No 3
>PLN02717 uridine nucleosidase
Probab=99.94 E-value=2.3e-26 Score=163.19 Aligned_cols=119 Identities=57% Similarity=0.894 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecCcccceeeeec
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSGITRGLTLLYN 80 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g~trG~tv~d~ 80 (119)
++++++++|.+.+++.++++.+++++|.++|.+.+|..|+++|||+|++++++|++|++++.+|+||++|.+||||++|+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~la~a~~~~P~~~~~~~~~v~Ve~~g~trG~tv~d~ 277 (316)
T PLN02717 198 LTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDGIYLHDPTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDN 277 (316)
T ss_pred cCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhcCCCcccCCcHHHhHHhcCccceEEEEecEEEEeCCCCCceEeeec
Confidence 57899999998889999999999999999988888899999999999999999999999999999999999999999997
Q ss_pred cccccccccCCCCCCceEEEeecCHHHHHHHHHHHhccC
Q 033414 81 KQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMDS 119 (119)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~~ 119 (119)
+.........+++.+|++|+.++|.++|+++|+++|.++
T Consensus 278 ~~~~~~~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~~ 316 (316)
T PLN02717 278 GLKRWNGENAWTGRPPVKVAVTVDAPAVVELVKERLMAS 316 (316)
T ss_pred cccccccccccCCCCCCEEeeecCHHHHHHHHHHHhccC
Confidence 421111111234567999999999999999999999765
No 4
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=99.93 E-value=2.9e-25 Score=157.21 Aligned_cols=111 Identities=30% Similarity=0.483 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchh-hcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHD-AYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~-~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~ 78 (119)
+|++++++|.+.+++.++++.+++++|.++|.+ .+|..|+++||++|++++++|++|++.+.+|+||++| .+||||++
T Consensus 197 ~t~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~ 276 (311)
T PRK10443 197 IMDEDIERIRAIGNPVATIVAELLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGEYTQGMTVV 276 (311)
T ss_pred cCHHHHHHHHhcCChHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCHHHhHHhcCcceEEEEEeCEEEEcCCCCCCceEEE
Confidence 578999999998999999999999999998875 6788999999999999999999999999999999998 79999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
|..+. ++..+|++|++++|.++|+++|+++|.+
T Consensus 277 ~~~~~-------~~~~~n~~v~~~vd~~~f~~~l~~~l~~ 309 (311)
T PRK10443 277 DYYQL-------TGNKPNATVLVDVDRQGFVDLLAERLKF 309 (311)
T ss_pred ecccc-------CCCCCCCEEEeecCHHHHHHHHHHHHHh
Confidence 86542 2346899999999999999999999864
No 5
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=99.92 E-value=1.6e-24 Score=154.00 Aligned_cols=111 Identities=24% Similarity=0.416 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecCcccceeeeec
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSGITRGLTLLYN 80 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g~trG~tv~d~ 80 (119)
+|++++++|.+.+++.++++.+++++|+++|++..+..++++|||+|++++++|++|++.+.+|+||++|..+|||++|+
T Consensus 198 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lhD~lAva~~~~P~l~~~~~~~v~Ve~~g~~~G~tv~d~ 277 (320)
T cd02653 198 LTPNLLERLARAKDSVGAFIEDALRFYFEFHWAYGHGYGAVIHDPLAAAVALNPNLARGRPAYVDVECTGVLTGQTVVDW 277 (320)
T ss_pred cCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHhcChhheEEEEeeEEEEeCCCCCceEEEec
Confidence 57889999999889999999999999999887655556899999999999999999999999999999995569999998
Q ss_pred cccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 81 KQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
++. +...+|++|+.++|.++|+++|+++|.+
T Consensus 278 ~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (320)
T cd02653 278 AGF-------WGKGANAEILTKVDSQDFMALFIERVLA 308 (320)
T ss_pred ccc-------CCCCCCcEEeeccCHHHHHHHHHHHHHH
Confidence 653 2456899999999999999999998754
No 6
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=99.91 E-value=1.4e-23 Score=148.27 Aligned_cols=108 Identities=28% Similarity=0.415 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
++++++++|.+.+++.++|+.+++++|.++|.+.. ..++++||++|++++++|++|++++.+|+||++| ++||+|++|
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~la~~~~~~p~~~~~~~~~v~Ve~~g~~~rG~tv~d 272 (302)
T cd02651 194 ATPEVIERIRALGNPVGKMLAELLDFFAETYGSAF-TEGPPLHDPCAVAYLLDPELFTTKRANVDVETEGELTRGRTVVD 272 (302)
T ss_pred cCHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhhc-cCCCCCCcHHHhHHhcCccceEEEEeeEEEEcCCCCCCceEEEe
Confidence 57899999999889999999999999998776654 6789999999999999999999999999999998 899999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHh
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRL 116 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l 116 (119)
+.+. ....+|++|++++|.++|+++|+++|
T Consensus 273 ~~~~-------~~~~~~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 273 LRGV-------TGRPANAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred cccc-------CCCCCCcEEeeecCHHHHHHHHHHhC
Confidence 7642 13468999999999999999999875
No 7
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=99.90 E-value=1.4e-23 Score=148.29 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeee-eeEEEEecC-cccceeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYME-AVIRVQTSG-ITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~-~~v~Ve~~g-~trG~tv~ 78 (119)
++++++++|++. ++.++|+.+++++|.++|++.+|..|+++|||+|++++++|++|++.. .+|+||++| ++||||++
T Consensus 200 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~g~~~~G~tv~ 278 (306)
T cd02649 200 LDWEFEDKWANR-LEKALFAESLNRREYAFASEGLGGDGWVPCDALAVAAALDPSIITRRLTYAVDVELHGELTRGQMVV 278 (306)
T ss_pred cCHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhhcCCCCCCCCcHHHHHHHcCHhHEEEEEeeeEEEEECCCCCcceEEE
Confidence 578899999876 588999999999999998887888999999999999999999999765 569999988 79999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHH
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFM 113 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~ 113 (119)
|+.+. +...+|++|++++|.++|+++|+
T Consensus 279 d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~ 306 (306)
T cd02649 279 DWLGT-------LKKKPNARVITKIDREKFKELLY 306 (306)
T ss_pred ecccc-------CCCCCCCEEehhcCHHHHHHHhC
Confidence 97642 23568999999999999999874
No 8
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=99.90 E-value=6.1e-23 Score=145.07 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
+|++++++|++. ++.++|+.+++++|++++. ..|+++||++|++++++|++|++++.+|+||++| ++||||++|
T Consensus 196 ~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~----~~g~~~hD~la~a~~~~P~~~~~~~~~v~Ve~~g~~trG~tv~d 270 (304)
T PRK10768 196 LTPDYLATLPEL-NRTGKMLHALFSHYRSGSM----QTGLRMHDVCAIAYLLRPELFTLKPCFVDVETQGEFTAGATVVD 270 (304)
T ss_pred cCHHHHHHHHhc-ChHHHHHHHHHHHHHhhcc----cCCCCcCcHHHhhheeCcccEEEEEecEEEEeCCCCCCceEEEe
Confidence 578999999876 6889999999999987654 2578999999999999999999999999999998 699999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+.+. ++..+|++|++++|.++|+++|+++|.+
T Consensus 271 ~~~~-------~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 302 (304)
T PRK10768 271 IDGR-------LGKPANAQVALDIDVDGFQKWFAEVLAL 302 (304)
T ss_pred cccc-------CCCCCCcEEEeecCHHHHHHHHHHHHHh
Confidence 7642 2346899999999999999999999864
No 9
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=99.89 E-value=1.7e-22 Score=142.84 Aligned_cols=108 Identities=42% Similarity=0.653 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecCcccceeeeec
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSGITRGLTLLYN 80 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g~trG~tv~d~ 80 (119)
++++++++|.+.+++.++|+.+++++|.+++.+.++..|+++||++|++++++|++|++++.+++||++|++||+|++|+
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~D~la~~~~~~P~~~~~~~~~v~Ve~~g~~~G~tv~d~ 275 (304)
T cd02650 196 LTREDLDELRDSGGKAGQFLADMLDYYIDFYQESPGLRGCALHDPLAVAAAVDPSLFTTREGVVRVETEGPTRGRTIGDR 275 (304)
T ss_pred cCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCcccCCcHHHHHhhcCccceEEEEeeEEEEeCCCCCceEEEec
Confidence 57899999998889999999999999999888777788999999999999999999999999999999999999999998
Q ss_pred cccccccccCCCCCCceEEEeecCH-HHHHHHHH
Q 033414 81 KQKRFAEITEWSDKPWVKVAVTVDA-PAVYKLFM 113 (119)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~vD~-~~f~~~~~ 113 (119)
++..+ |+..+|.++.+.+|. ++|+++|+
T Consensus 276 ~~~~~-----~~~~~~~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 276 DGRRF-----WDSSPNATVAVDVDVDERFLKRLM 304 (304)
T ss_pred ccccc-----ccCCCCceEEEEEChhHHHHHHhC
Confidence 75311 234567555555555 99999874
No 10
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=99.87 E-value=1.5e-21 Score=137.53 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecCcccceeeeec
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSGITRGLTLLYN 80 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g~trG~tv~d~ 80 (119)
++++++++|.+.+++.++++.+++++|.++|++ ++..++++||++|++++++|++|+..+.+|+|+++|+++|+|++|+
T Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~lAv~~~~~P~~~~~~~~~v~V~~~g~~~G~t~~d~ 271 (295)
T cd00455 193 LTPPMVERIFEQGTSIGLLIKPMIDYYYKAYQK-PGIEGSPIHDPLAVAYLLNPSMFDYSKVPVDVDTDGLTRGQTIADF 271 (295)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-CCCCcCCCChHHHHHHhcCcccEEEEEEeEEEEeCCCCCceEEEec
Confidence 477889999998899999999999999998877 7788999999999999999999999999999999999999999997
Q ss_pred cccccccccCCCCCCceEEEeecCHHHHHHHH
Q 033414 81 KQKRFAEITEWSDKPWVKVAVTVDAPAVYKLF 112 (119)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~ 112 (119)
.+. + ..+|++|+.++|.++|+++|
T Consensus 272 ~~~-------~-~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 272 REN-------P-GNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred ccC-------C-CCCCcEEEEecCHHHHHhhC
Confidence 642 1 35799999999999999864
No 11
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=99.87 E-value=2.7e-21 Score=137.77 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHcCC-hhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeee
Q 033414 1 MTDADRDKLVCSNG-KHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~-~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~ 78 (119)
+|++++++|++.++ +.++|+.+++.++.. +....+..|+++|||+|++++++|++|++++++|+||++| ++||+|++
T Consensus 218 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~hD~lA~a~~~~Pel~~~~~~~v~Ve~~~~~t~G~tv~ 296 (326)
T PTZ00313 218 VTSEVVKKFGAQNKYLLSQFVGSTWAMCTH-HELLRPGDGYYAWDVLTAAYVIERNLAELEPVPLEVVVEKAKNEGRTRR 296 (326)
T ss_pred CCHHHHHHHHhcCcchHHHHHHHHHhhhhh-hhhhcCCCCCcCcHHHHHHHhcChheEEEEEEEEEEEeCCCCCCceEEe
Confidence 57899999988766 689999988765432 2211234789999999999999999999999999999986 89999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhc
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLM 117 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~ 117 (119)
|.. ..+|++|++++|.++|+++|+++|.
T Consensus 297 ~~~-----------~~~~~~V~~~vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 297 AAE-----------GAACTYVAKNTNAELFYDMVLDSAR 324 (326)
T ss_pred CCC-----------CCCceEEEecCCHHHHHHHHHHHHh
Confidence 753 2367999999999999999999875
No 12
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=99.86 E-value=1.9e-21 Score=138.25 Aligned_cols=103 Identities=24% Similarity=0.247 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCC-CcccCchHHHHHHHhcCCcceeeee-eEEEEecCcccceeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNT-KGVYLHDPTALLVAVNPSLFTYMEA-VIRVQTSGITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~-~g~~lhD~lava~ll~P~l~~~~~~-~v~Ve~~g~trG~tv~ 78 (119)
+++++++++ ++.++++.+++++|.++|.+.++. .|+++||++|++++++|++|++.+. +|+||++|.+||+|++
T Consensus 213 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~hD~lava~~~~P~l~~~~~~~~v~Ve~~~~~~G~tv~ 288 (318)
T cd02654 213 LTPEQIKAD----DPLRDFIRETLDLPIDYAKEFVGTGDGLPMWDELASAVALDPELATSSETFYIDVQTDSDGGGQLIW 288 (318)
T ss_pred CCHHHHhcc----CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHcCHhHccceEeEEEEEEeCCCcCCeEEe
Confidence 356666544 677999999999999988776664 7999999999999999999998877 9999998789999999
Q ss_pred eccccccccccCCC-CCCceEEEeecCHHHHHHHH
Q 033414 79 YNKQKRFAEITEWS-DKPWVKVAVTVDAPAVYKLF 112 (119)
Q Consensus 79 d~~~~~~~~~~~~~-~~~~~~v~~~vD~~~f~~~~ 112 (119)
|+.+.. ..+ ..+|++|+.++|.++|+++|
T Consensus 289 d~~~~~-----~~~~~~~n~~v~~~vD~~~f~~~~ 318 (318)
T cd02654 289 PEDLLL-----AKGLRPYHVKVITAVDVAAFLNLI 318 (318)
T ss_pred ecccCC-----CCCCCCCCCEEeecccHHHHHhhC
Confidence 976421 011 25799999999999999874
No 13
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=99.84 E-value=2.4e-20 Score=132.23 Aligned_cols=108 Identities=36% Similarity=0.591 Sum_probs=92.9
Q ss_pred CCHHHHHHHHH-cCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHH-hcCCcce-eeeeeEEEEecC-ccccee
Q 033414 1 MTDADRDKLVC-SNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVA-VNPSLFT-YMEAVIRVQTSG-ITRGLT 76 (119)
Q Consensus 1 lt~~~~~~l~~-~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~l-l~P~l~~-~~~~~v~Ve~~g-~trG~t 76 (119)
++++++++|.+ .+++.++++.+++++|.+++++. ..++++||++|++++ ++|++|. +++.+++|+++| ++||+|
T Consensus 200 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~la~~~~~~~P~~~~~~~~~~v~V~~~~~~~~G~t 277 (312)
T PF01156_consen 200 LTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG--SDGFPLHDPLAAAYAELDPELFTEFERGPVDVETDGGLTRGQT 277 (312)
T ss_dssp EEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH--SSSEE-HHHHHHHHH-H-GGGEEEEEEEEEEEESSSSTTTTEE
T ss_pred CCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc--cCCcccCCHHHHHHHHhCCccceecceEEEEEEECCCCCCceE
Confidence 36788999987 67899999999999999887643 678999999999999 9999977 999999999998 999999
Q ss_pred eeeccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 77 LLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 77 v~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
++|+.+ +...+|++|+.++|.++|+++|+++|.+
T Consensus 278 ~~d~~~--------~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 311 (312)
T PF01156_consen 278 VVDREG--------SSGGPNVRVATDVDVDAFFDLLLERLAR 311 (312)
T ss_dssp EEETTS--------TTSSECEEEEEEE-HHHHHHHHHHHHHH
T ss_pred EEeccc--------cCCCCcEEEeeecCHHHHHHHHHHHHhc
Confidence 999632 2457899999999999999999999875
No 14
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=99.82 E-value=7.7e-20 Score=129.57 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCHH----HHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeee-EEEEecCcccce
Q 033414 1 MTDA----DRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAV-IRVQTSGITRGL 75 (119)
Q Consensus 1 lt~~----~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~-v~Ve~~g~trG~ 75 (119)
++++ +++++.+.+++.++|+.+++++|++++ |..|+++||++|++++++|+++++.+.+ ++||++|.+|||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~hD~lava~~~~p~~~~~~~~~~v~Ve~~g~t~G~ 282 (312)
T cd02647 207 LTREFLETDRQRFAAQRLPASDLAGQGYALVKPLE----FNSTYYMWDVLTTLVLGAKEVDNTKESLILEVDTDGLSAGQ 282 (312)
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc----CCCCccccHHHHHHHHcCchhcccccccceEEEECCCCCce
Confidence 3556 667888888999999999999999876 6789999999999999999999999999 999999999999
Q ss_pred eeeeccccccccccCCCCCCceEEEeecCHHHHH
Q 033414 76 TLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVY 109 (119)
Q Consensus 76 tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~ 109 (119)
|++|++ .+|++|++++|.+...
T Consensus 283 Tv~d~~------------~~n~~v~~~vd~~~~~ 304 (312)
T cd02647 283 TVTSPN------------GRPLTLVTSNNSYGSN 304 (312)
T ss_pred EEEcCC------------CCCeEEEEeeCcccch
Confidence 999964 2689999999998733
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=99.72 E-value=3.5e-17 Score=117.27 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=64.9
Q ss_pred HHHHHH--cCChhhHHH-----HHHHHHHHHhchhhcCCCcc---cCchHHHHHHHhcCC----------cceeeeeeEE
Q 033414 6 RDKLVC--SNGKHAQYL-----CKILEVYFSYHHDAYNTKGV---YLHDPTALLVAVNPS----------LFTYMEAVIR 65 (119)
Q Consensus 6 ~~~l~~--~~~~~~~~~-----~~~~~~y~~~~~~~~g~~g~---~lhD~lava~ll~P~----------l~~~~~~~v~ 65 (119)
++.+++ .+++.++|+ .+++.+|.++|.+.++..|+ ++|||+|++++++|+ +|++++++|+
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lHD~lava~~i~p~~~~~~~~~~~~~~~~~~~v~ 331 (367)
T cd02648 252 VTPRDAPERGSPLARWLEHVFISTFLTHPRAFTPEEFLPDRSELFEMHDPLAVWYAIFADMPATGSIDGNGWKHTPRDFR 331 (367)
T ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCcHHHhHhhcCcccccccccccceEEEEEecEE
Confidence 455666 678999964 44555899888877766666 999999999999999 8999999999
Q ss_pred EEecC-cccceeeeeccc
Q 033414 66 VQTSG-ITRGLTLLYNKQ 82 (119)
Q Consensus 66 Ve~~g-~trG~tv~d~~~ 82 (119)
||+.| +||||||+|+++
T Consensus 332 Ve~~g~~trG~tV~D~~~ 349 (367)
T cd02648 332 VETSGQWTRGMCVVDRRG 349 (367)
T ss_pred EEeCCCCCCceEEEecCC
Confidence 99998 899999999765
No 16
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=97.69 E-value=8.7e-05 Score=53.67 Aligned_cols=99 Identities=17% Similarity=0.059 Sum_probs=68.9
Q ss_pred CChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceee--eeeEEEEecCcccceeeeeccccccccccC
Q 033414 13 NGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYM--EAVIRVQTSGITRGLTLLYNKQKRFAEITE 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~--~~~v~Ve~~g~trG~tv~d~~~~~~~~~~~ 90 (119)
.+++..++.-...++. -+...+|..+.+.+|..+++.++.|+.+... -..+.+.+.++++||.++++-...
T Consensus 234 ~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------ 306 (350)
T KOG2938|consen 234 HPILESYLSLGTARQQ-VYNGAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDVLLDSPTRGQMVVDHLPAK------ 306 (350)
T ss_pred CchhHHhhhhhHHhhh-cccccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeeeeecCcceeeeEEecchhh------
Confidence 3444444444333333 2344567777888999999999999987744 455666667799999999843211
Q ss_pred CCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 91 WSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 91 ~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
.....|+.....+|.+.|+..+...+.+
T Consensus 307 ~~~~~~v~~~~~~~~~~f~~~~~~~l~~ 334 (350)
T KOG2938|consen 307 LDYPANVTKITTVDVVKFLTLRIQVLGR 334 (350)
T ss_pred hcccccceeecccccchheehhhhhhhh
Confidence 1246899999999999999999887653
No 17
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=92.30 E-value=0.14 Score=36.61 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=18.7
Q ss_pred ccCchHHHHHHHhcCC--cceeee
Q 033414 40 VYLHDPTALLVAVNPS--LFTYME 61 (119)
Q Consensus 40 ~~lhD~lava~ll~P~--l~~~~~ 61 (119)
.++||+++++|+++|+ +|...+
T Consensus 228 ~~~wD~~t~l~av~~~~~~F~~~~ 251 (293)
T cd02652 228 RPLWDPLTLLAAVRGGGMLFDLRE 251 (293)
T ss_pred ccchHHHHHHHeeCCcCCcccccc
Confidence 7899999999999997 777443
No 18
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=69.15 E-value=12 Score=22.20 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=24.8
Q ss_pred HHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCC
Q 033414 9 LVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPS 55 (119)
Q Consensus 9 l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~ 55 (119)
+...+.-+..++.+|.+-|.++.. . .+..+++|.++||.
T Consensus 26 ~~~~d~~l~~ma~~M~~KfdKYw~------~--~~~~l~ia~ILDPR 64 (101)
T PF14372_consen 26 WNNDDPDLKNMAKKMKEKFDKYWK------D--CNLLLAIATILDPR 64 (101)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH------H--hHHHHHHHHHhchH
Confidence 333334456667777666666543 1 34459999999995
No 19
>PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif. The domain confers 5'-3' exonuclease activity to the polymerase []. ; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 4DF4_A 3T3F_A 1QSY_A 3OJS_A 3PO5_A 3OJU_A 1QTM_A 1QSS_A 3PY8_A 4DFJ_A ....
Probab=63.29 E-value=5.7 Score=25.02 Aligned_cols=25 Identities=20% Similarity=-0.024 Sum_probs=12.8
Q ss_pred hhcCCCcccCchHHHHHHHhcCCcc
Q 033414 33 DAYNTKGVYLHDPTALLVAVNPSLF 57 (119)
Q Consensus 33 ~~~g~~g~~lhD~lava~ll~P~l~ 57 (119)
+..|..--|=-||+-++|++||+.-
T Consensus 78 ~~~G~~v~PGDDPlLlAYLlDPsNt 102 (138)
T PF09281_consen 78 LREGVVVEPGDDPLLLAYLLDPSNT 102 (138)
T ss_dssp HHTT----B---HHHHHHHH-TT--
T ss_pred HhcCcccCCCCCcchhhhhcCccCC
Confidence 3567777788999999999999753
No 20
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=53.57 E-value=28 Score=17.33 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=21.1
Q ss_pred CHHHHHHHH----HcCChhhHHHHHHHHHHHHhc
Q 033414 2 TDADRDKLV----CSNGKHAQYLCKILEVYFSYH 31 (119)
Q Consensus 2 t~~~~~~l~----~~~~~~~~~~~~~~~~y~~~~ 31 (119)
+.+..++|. +.+-|.++++.+.++-|.+-|
T Consensus 10 ~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 10 DKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 344444444 357889999999999887654
No 21
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=44.06 E-value=31 Score=22.71 Aligned_cols=46 Identities=4% Similarity=-0.075 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHH
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPT 46 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~l 46 (119)
++++.++.+++.-+=-...++.+..||..|+.+..|..-..+++-.
T Consensus 52 Ip~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~P~Gk~~I~VC~g~ 97 (169)
T PRK07571 52 LERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVVCTGT 97 (169)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHHccccCcCCCCCEEEEEcCCh
Confidence 3556666666432222345677777887776554444333344443
No 22
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=42.39 E-value=28 Score=22.53 Aligned_cols=37 Identities=3% Similarity=0.081 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCC
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNT 37 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~ 37 (119)
++++.++.+++.-+=-...++++..||-.|+.+..|.
T Consensus 39 Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f~~~p~Gk 75 (156)
T PRK05988 39 VPEDAVPVIAEALNLSRAEVHGVITFYHDFRTHPPGR 75 (156)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHhhccCCCCCCC
Confidence 4566677776542333356788888998887655454
No 23
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=38.71 E-value=63 Score=17.06 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=16.0
Q ss_pred CCHHHHHHHHH-cCChhhHHHHHHHH
Q 033414 1 MTDADRDKLVC-SNGKHAQYLCKILE 25 (119)
Q Consensus 1 lt~~~~~~l~~-~~~~~~~~~~~~~~ 25 (119)
+|.++++.+.. .++|+|+-+.+...
T Consensus 17 ft~~El~~i~~FY~Sp~Gqk~~~~~~ 42 (64)
T PF09832_consen 17 FTEEELDAILAFYESPLGQKIVAKEP 42 (64)
T ss_dssp S-HHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCHHhHHHHHHhH
Confidence 46777777766 46787776655544
No 24
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=38.57 E-value=52 Score=20.91 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCC
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNT 37 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~ 37 (119)
++++.++.+++.-+=-...++.+..||-.|+.+..|.
T Consensus 32 i~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~p~gk 68 (148)
T TIGR01958 32 VTPEAIAAVAEMLGIPPVWVYEVATFYSMFDTEPVGR 68 (148)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcCCCCC
Confidence 4667777777543333356788899999887765553
No 25
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=34.97 E-value=69 Score=20.51 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCC
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNT 37 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~ 37 (119)
++++.++.+++.-+--...++.+..||..|+.+..|.
T Consensus 38 ip~~~~~~iA~~l~v~~~~v~~v~tFY~~f~~~p~gk 74 (154)
T PRK07539 38 VPDEAIEAVADYLGMPAIDVEEVATFYSMIFRQPVGR 74 (154)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHHHhhhCcCCCCC
Confidence 4566777776543333456788889998887654443
No 26
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=34.42 E-value=44 Score=21.06 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHcCChhhH-----------HHHHHHHHHHHhchhhcCCCcccCchHHHHH
Q 033414 1 MTDADRDKLVCSNGKHAQ-----------YLCKILEVYFSYHHDAYNTKGVYLHDPTALL 49 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~-----------~~~~~~~~y~~~~~~~~g~~g~~lhD~lava 49 (119)
||++++++|.+.+.|+-+ -+..+.+++.+. .+..+..+.|.+.++
T Consensus 84 Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~----~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 84 LSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA----PKGEKLTLAEALRAA 139 (141)
T ss_pred CCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc----cccCCCCHHHHHHHh
Confidence 689999999988877633 466666655442 111147788888765
No 27
>PF02406 MmoB_DmpM: MmoB/DmpM family ; InterPro: IPR003454 This family consists of monooxygenase components such as MmoB methane monooxygenase (1.14.13.25 from EC) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilises intermediates required for the activation of dioxygen []. Also found in this family is DmpM or Phenol hydroxylase (1.14.13.7 from EC) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase []. Phenol hydroxylase catabolises phenol and some of its methylated derivatives in the first step of phenol biodegradation, and is required for growth on phenol. The multicomponent enzyme is made up of P0, P1, P2, P3, P4 and P5 polypeptides.; GO: 0004497 monooxygenase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2INN_L 2INP_L 1CKV_A 3Q3M_H 3GE3_E 1G11_A 2BF2_B 3I5J_E 3Q3O_E 3I63_E ....
Probab=30.88 E-value=97 Score=18.01 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.7
Q ss_pred chHHHHHHHh-cCCcc-eeeeeeEEEEecC
Q 033414 43 HDPTALLVAV-NPSLF-TYMEAVIRVQTSG 70 (119)
Q Consensus 43 hD~lava~ll-~P~l~-~~~~~~v~Ve~~g 70 (119)
-++++-+... +|++. +....+++|+..|
T Consensus 14 ~~~iveai~~dNP~v~V~d~~a~vrI~a~g 43 (87)
T PF02406_consen 14 ARAIVEAIEEDNPGVTVEDRPAYVRIDAPG 43 (87)
T ss_dssp HHHHHHHHHHHSSTEEEEEESSEEEEEESS
T ss_pred HHHHHHHHHhhCCCeEEEecCCEEEEecCC
Confidence 3455555555 89964 4889999999875
No 28
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases. The 3'-5' exonuclease domain of family-A DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-A DNA polymerases contain a DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-B DNA polymerases. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four invariant acidic residues that serve as ligands for the two metal ions required for catalysis. The Klenow fragment (KF) of Escherichia coli Pol I, the Thermus aquaticus (Taq) Pol I, and Bacillus stearothermophilus (BF) Pol I are examples of family-A DNA polymerases. They are involved in nucleotide excision repair and in the processing of Okazaki fragments that are generated during lagging strand synthesis. The N-terminal domains of BF Pol I and Taq Po
Probab=30.83 E-value=34 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=13.8
Q ss_pred cCchHHHHHHHhcCCc
Q 033414 41 YLHDPTALLVAVNPSL 56 (119)
Q Consensus 41 ~lhD~lava~ll~P~l 56 (119)
+.+|..-++|+++|+-
T Consensus 78 ~~fD~~LAaYLL~p~~ 93 (151)
T cd06128 78 IAFDTMLEAYLLDPVA 93 (151)
T ss_pred cchhHHHHHHHcCCCC
Confidence 4699999999999953
No 29
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.99 E-value=1.3e+02 Score=17.15 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHh
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSY 30 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~ 30 (119)
++..+++.+.........-..+++..|.+.
T Consensus 30 ls~~dI~~i~~~~~~~~eq~~~mL~~W~~r 59 (86)
T cd08318 30 MKDKEIRAIESDSEDIKMQAKQLLVAWQDR 59 (86)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 467788888865555567778888877653
No 30
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=26.15 E-value=39 Score=19.15 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHh
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSY 30 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~ 30 (119)
||++.+++|+...|+.+--+.++++.=.+.
T Consensus 14 LT~e~y~~lk~k~T~~g~tl~~~I~~gv~n 43 (76)
T PF02807_consen 14 LTPEVYEKLKDKKTPSGFTLDDCIQSGVDN 43 (76)
T ss_dssp --HHHHHHHTTBB-TTS-BHHHHHHHHHHT
T ss_pred CCHHHHHHHhcCCCCCCCcHHHHHHHhhcc
Confidence 577777888777777777777776655443
No 31
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.49 E-value=86 Score=14.54 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHH-HcCChhhHHHHHHHHHHHH
Q 033414 6 RDKLV-CSNGKHAQYLCKILEVYFS 29 (119)
Q Consensus 6 ~~~l~-~~~~~~~~~~~~~~~~y~~ 29 (119)
++++. +.|...+.++..+++.|.+
T Consensus 14 l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 14 LDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34444 3577788899888887754
No 32
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=22.95 E-value=27 Score=27.02 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=40.5
Q ss_pred hhhcCCCcccCchHHHHHHHhcCCcc----eeeeeeEEEEecCcc--cceeeeecc--ccccccccCCCCCCceEEEeec
Q 033414 32 HDAYNTKGVYLHDPTALLVAVNPSLF----TYMEAVIRVQTSGIT--RGLTLLYNK--QKRFAEITEWSDKPWVKVAVTV 103 (119)
Q Consensus 32 ~~~~g~~g~~lhD~lava~ll~P~l~----~~~~~~v~Ve~~g~t--rG~tv~d~~--~~~~~~~~~~~~~~~~~v~~~v 103 (119)
.+.+..+|++=|||+-+.....--+- ...-.+-+|..-|.| |..||+-.+ |++..+.-.|.+.....+|.++
T Consensus 37 ~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L 116 (499)
T COG0554 37 TQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEEL 116 (499)
T ss_pred hhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHH
Confidence 34456689999999976654432221 122234455555643 666666433 2222222234444445555554
Q ss_pred CHHHHHHHH
Q 033414 104 DAPAVYKLF 112 (119)
Q Consensus 104 D~~~f~~~~ 112 (119)
..+...+.+
T Consensus 117 ~~~g~~~~i 125 (499)
T COG0554 117 KADGYEERI 125 (499)
T ss_pred Hhcchhhhh
Confidence 444443333
No 33
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.31 E-value=31 Score=21.09 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHH
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYF 28 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~ 28 (119)
|++++.++|...+..+++-+.+.+.-+.
T Consensus 59 Ls~~D~~~l~~~~~~l~~el~~~l~~~a 86 (116)
T PF12401_consen 59 LSPEDYERLSPWGDRLARELADYLAEHA 86 (116)
T ss_dssp EEHHHHHHH-S-SHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4578888887765556555555554443
No 34
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.66 E-value=1.8e+02 Score=16.53 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHh
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSY 30 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~ 30 (119)
||+..++.+........+-.+++++-|.+.
T Consensus 23 lse~~Id~ie~~~~~~~Eq~yqmL~~W~~~ 52 (80)
T cd08313 23 LSDNEIERVELDHRRCRDAQYQMLKVWKER 52 (80)
T ss_pred CCHHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 577788888765556678889999888653
No 35
>PF03038 Herpes_UL95: UL95 family; InterPro: IPR004280 Members of this family are functionally uncharacterised proteins from herpesviruses.
Probab=20.44 E-value=2.8e+02 Score=20.61 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=26.3
Q ss_pred ChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhc
Q 033414 14 GKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVN 53 (119)
Q Consensus 14 ~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~ 53 (119)
-.+..++.++++.-.. -..+.++..-||++.+||+-
T Consensus 148 ~nK~~~I~~~L~~l~~----P~~w~~~~p~Dpl~llWLLF 183 (348)
T PF03038_consen 148 LNKDSIIEKALELLAT----PGLWDHLNPCDPLPLLWLLF 183 (348)
T ss_pred cCHHHHHHHHHHhhCC----CccCCCCCcCCHHHHHHHHH
Confidence 4467888888875421 22357888999999999983
No 36
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=20.43 E-value=1.6e+02 Score=17.08 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHH
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEV 26 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~ 26 (119)
|++++.+.+.-.+.|+......+++-
T Consensus 34 lswEDYe~~~~~~~PL~~~aR~LLD~ 59 (87)
T cd08787 34 LSWEDYEGFHVLGQPLSHNARQLLDT 59 (87)
T ss_pred hhHHHHhhhhhcCCchHHHHHHHHHH
Confidence 46788888888888888777777663
No 37
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=20.15 E-value=1.6e+02 Score=22.35 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcC
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYN 36 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g 36 (119)
|+++.++.+.+.-+=--..++++..||..|+.+..|
T Consensus 53 Ip~~ai~~VAe~Lgvp~~~V~eVATFYtmF~~~P~G 88 (400)
T PRK12373 53 VTRAAIEKVADMLDMAYIRVLEVATFYTQFQLQPVG 88 (400)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHhhcccccCCC
Confidence 355556666543222234577888888888766555
No 38
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=20.04 E-value=69 Score=14.04 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=4.8
Q ss_pred HHHhcCCcc
Q 033414 49 LVAVNPSLF 57 (119)
Q Consensus 49 a~ll~P~l~ 57 (119)
.++++||-|
T Consensus 17 ~aLl~PErF 25 (25)
T PF09604_consen 17 YALLRPERF 25 (25)
T ss_pred HHHhCcccC
Confidence 345666643
No 39
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=20.03 E-value=49 Score=15.03 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=9.4
Q ss_pred CHHHHHHHHHcCChhhHHH
Q 033414 2 TDADRDKLVCSNGKHAQYL 20 (119)
Q Consensus 2 t~~~~~~l~~~~~~~~~~~ 20 (119)
+.+++.++...|...|+.+
T Consensus 9 s~eeL~~lpGIG~~tA~~I 27 (30)
T PF00633_consen 9 SIEELMKLPGIGPKTANAI 27 (30)
T ss_dssp SHHHHHTSTT-SHHHHHHH
T ss_pred CHHHHHhCCCcCHHHHHHH
Confidence 3455555655555554443
Done!