Query 033414
Match_columns 119
No_of_seqs 166 out of 1015
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t8j_A Purine nucleosidase, (I 99.9 4.7E-27 1.6E-31 165.3 12.9 114 1-118 195-310 (311)
2 3t8i_A Purine nucleosidase, (I 99.9 1.5E-27 5.3E-32 167.3 10.4 110 1-117 195-305 (306)
3 1q8f_A Pyrimidine nucleoside h 99.9 1.7E-26 6E-31 162.7 11.4 111 1-118 197-308 (313)
4 3fz0_A Nucleoside hydrolase, p 99.9 3.4E-27 1.2E-31 168.4 7.3 118 1-119 216-359 (360)
5 2mas_A Inosine-uridine nucleos 99.9 3.1E-26 1.1E-30 161.5 11.5 111 1-118 198-309 (314)
6 1yoe_A Hypothetical protein YB 99.9 6E-26 2E-30 160.4 11.9 111 1-118 208-320 (322)
7 3epw_A IAG-nucleoside hydrolas 99.9 1.3E-23 4.5E-28 149.3 9.8 107 1-118 229-337 (338)
8 2c40_A Inosine-uridine preferr 99.8 3.2E-21 1.1E-25 135.8 8.3 105 1-118 204-309 (312)
9 2k9i_A Plasmid PRN1, complete 23.9 70 0.0024 15.2 3.4 30 2-31 17-50 (55)
10 2ba3_A NIKA; dimer, bacterial 23.7 71 0.0024 15.3 2.8 23 1-23 22-48 (51)
11 2xv9_A ABA-1A1 repeat UNIT; li 23.2 1.2E+02 0.004 18.4 3.7 29 1-29 21-52 (134)
12 2k5j_A Uncharacterized protein 22.8 99 0.0034 16.6 4.2 26 6-31 24-50 (80)
13 2kp7_A Crossover junction endo 22.7 41 0.0014 18.6 1.5 28 2-29 56-83 (87)
14 2cpg_A REPA protein, transcrip 22.6 68 0.0023 14.6 3.6 26 5-30 16-42 (45)
15 1sf9_A YFHH hypothetical prote 21.7 39 0.0013 20.3 1.3 19 45-63 68-87 (128)
16 2lc0_A Putative uncharacterize 20.9 62 0.0021 19.4 2.2 29 1-29 66-94 (132)
No 1
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus}
Probab=99.95 E-value=4.7e-27 Score=165.28 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcce-eeeeeEEEEecC-cccceeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFT-YMEAVIRVQTSG-ITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~-~~~~~v~Ve~~g-~trG~tv~ 78 (119)
+|++++++|++.+++.++|+.+++++|.+++++.+|..|+++|||+|++++++|++|+ +++.+|+||++| ++||+|++
T Consensus 195 lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lhD~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~ 274 (311)
T 3t8j_A 195 VTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHPDAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLV 274 (311)
T ss_dssp BCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSSBCCHHHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEE
T ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEE
Confidence 4789999999999999999999999999998888899999999999999999999997 799999999987 89999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
|+++.. +.+++.+|++|++++|.++|+++|+++|.+
T Consensus 275 d~~~~~----~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 310 (311)
T 3t8j_A 275 DRFDAD----TSWSDKPNAEIVYEINKKSFMEKIYDLLNW 310 (311)
T ss_dssp ECSCSS----SCSCSSCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred ecCCCc----ccCCCCCCEEEeeccCHHHHHHHHHHHHhh
Confidence 987521 113457899999999999999999999875
No 2
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.5e-27 Score=167.29 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcc-eeeeeeEEEEecCcccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLF-TYMEAVIRVQTSGITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~-~~~~~~v~Ve~~g~trG~tv~d 79 (119)
+|++++++|++.+++.++|+.+++++|++|+++.+|..|+++|||+|++++++|+++ ++++++|+||++|.+||+|++|
T Consensus 195 ~t~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~~hD~lava~~l~P~l~~~~~~~~v~Ve~~g~t~G~tv~D 274 (306)
T 3t8i_A 195 LNERDWEYISKLNTKLSNFFINVNKTLKEYTTKNQGISGSIHPDSLTVSIAHDNSIILDSSLKYVDVELCSKSRGAMLID 274 (306)
T ss_dssp EEHHHHHHHHHHCCHHHHHHHHHTHHHHHHHHHHHSSSEEECHHHHHHHHHHCGGGEEEEEEECEEECCSGGGTTCEEEC
T ss_pred CCHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcCCCCCcCCCHHHhhhhccccceeEEEEEEEEEEECCCCCeeEEec
Confidence 468899999999999999999999999999888889999999999999999999985 5889999999998899999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLM 117 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~ 117 (119)
+++. +++.+|++|++++|.++|+++|+++|.
T Consensus 275 ~~~~-------~~~~~n~~V~~~vD~~~f~~~~~~~l~ 305 (306)
T 3t8i_A 275 WYSL-------HKNKPNAEIVLKADGGKFKNLLFNSLS 305 (306)
T ss_dssp TTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHH
T ss_pred cccc-------CCCCCCeEEEeccCHHHHHHHHHHHhh
Confidence 8753 345789999999999999999999885
No 3
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=99.94 E-value=1.7e-26 Score=162.66 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
+|++++++|++.+++.++++.+++++|.++|++.+|..|+++|||+|++++++|++|++++.+|+||++| ++||+|++|
T Consensus 197 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lhD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d 276 (313)
T 1q8f_A 197 CTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCD 276 (313)
T ss_dssp ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCSSEECTTHHHHHHHHCGGGEEEEEECEEECCCSSTTTTCEEEC
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCcCCCccchHHHHHHHcCcceeEEEEEEEEEEeCCCCCCCeEEEe
Confidence 4789999999989999999999999999998877788899999999999999999999999999999987 899999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+.+. ++..+|++|++++|.++|+++|+++|.+
T Consensus 277 ~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 308 (313)
T 1q8f_A 277 ELGV-------LGKPANTKVGITIDTDWFWGLVEECVRG 308 (313)
T ss_dssp TTCT-------TCCCCCEEEEEEECHHHHHHHHHHHHHT
T ss_pred cccc-------CCCCCCEEEEEecCHHHHHHHHHHHHHH
Confidence 8642 2356899999999999999999999864
No 4
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=99.94 E-value=3.4e-27 Score=168.45 Aligned_cols=118 Identities=20% Similarity=0.168 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHcCCh-hh----------HHHHHHHHHHHHhchhh-------------cCCCcccCchHHHHHHHhcCCc
Q 033414 1 MTDADRDKLVCSNGK-HA----------QYLCKILEVYFSYHHDA-------------YNTKGVYLHDPTALLVAVNPSL 56 (119)
Q Consensus 1 lt~~~~~~l~~~~~~-~~----------~~~~~~~~~y~~~~~~~-------------~g~~g~~lhD~lava~ll~P~l 56 (119)
+|++++++|++.+++ .+ +|+.+++++|.+||+.. .|+.+|++|||||++|+++|++
T Consensus 216 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~g~~~~~lHD~lava~~l~P~l 295 (360)
T 3fz0_A 216 MTWGFYDKLVNRESTPNGRVAVNQNKWQEFIEKLFQRLEAFTRIHDDGTRADTGDAEATQDVTCVVPDAVAVLVAIRPES 295 (360)
T ss_dssp EEHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHC------------------CEECCHHHHHHHHHHCGGG
T ss_pred cCHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHhhhccccccccccccccCcCCCccccHHHHHHHhChhh
Confidence 467889999877766 67 99999999999876532 4567799999999999999999
Q ss_pred ce-eeeeeEEEEecC-cccceeeeeccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhccC
Q 033414 57 FT-YMEAVIRVQTSG-ITRGLTLLYNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMDS 119 (119)
Q Consensus 57 ~~-~~~~~v~Ve~~g-~trG~tv~d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~~ 119 (119)
|+ +++++|+||++| ++||||++|+++..... ..++..+|++|++++|.++|+++|+++|..|
T Consensus 296 ~~~~~~~~V~Ve~~g~~trG~Tv~D~~~~~~~~-~~~~~~~n~~V~~~vD~~~f~~~~~~~l~~~ 359 (360)
T 3fz0_A 296 VLDSFLTYVTVELHGRETRGATCIDWYGTEQSM-AKKGRWRNCNVITKVDNEMFLKALRDIVEYV 359 (360)
T ss_dssp EEEEEEECEEECSSCSSCTTCEEECSSCCHHHH-HHTTCCCCEEEEEEECHHHHHHHHHHHHTCC
T ss_pred eeeEEEEEEEEEeCCCCcceEEEeccccccCcc-cccCCCCCeEEeEecCHHHHHHHHHHHhccc
Confidence 96 899999999998 79999999987631100 0112238999999999999999999999765
No 5
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=99.94 E-value=3.1e-26 Score=161.48 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~d 79 (119)
+|++++++|++.+++.++++.+++++|.++|++.+|..|+++|||+|++++++|++|++++.+|+||++| ++||+|++|
T Consensus 198 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lhD~lava~~~~p~~~~~~~~~v~Ve~~g~~t~G~tv~d 277 (314)
T 2mas_A 198 ATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVAD 277 (314)
T ss_dssp ECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSSEECCHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEEC
T ss_pred cCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccCCCCCcCCcHHHHHHHcChhheEEEEEeEEEEeCCCCCCceEEEe
Confidence 4789999999999999999999999999998877788899999999999999999999999999999998 699999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+++. ++..+|++|++++|.++|+++|+++|.+
T Consensus 278 ~~~~-------~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 309 (314)
T 2mas_A 278 FRNP-------RPEHCHTQVAVKLDFEKFWGLVLDALER 309 (314)
T ss_dssp CCSS-------CCSSCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred cccc-------CCCCCCEEEEeecCHHHHHHHHHHHHHh
Confidence 8652 2346799999999999999999998853
No 6
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=99.93 E-value=6e-26 Score=160.44 Aligned_cols=111 Identities=27% Similarity=0.451 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHHhch-hhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecC-cccceeee
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFSYHH-DAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSG-ITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~-~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g-~trG~tv~ 78 (119)
+|++++++|++.+++.++++.+++++|.++|. +.+|..|+++|||+|++++++|++|++++.+|+||++| ++||+|++
T Consensus 208 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lhD~lava~~~~P~~~~~~~~~v~Ve~~g~~t~G~tv~ 287 (322)
T 1yoe_A 208 IHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVV 287 (322)
T ss_dssp ECHHHHHHHHHHCSHHHHHHHHHHHHHHC-----CCCCSSEECCTHHHHHHHHCGGGEEEEEECEEECCSCSSCTTCEEE
T ss_pred CCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhcccCCCCCccccHHHhhheecccceEEEEEEEEEEeCCCCCCceEEE
Confidence 47899999999899999999999999998654 45678899999999999999999999999999999987 89999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
|+++. +++.+|++|++++|.++|+++|+++|.+
T Consensus 288 d~~~~-------~~~~~n~~v~~~vD~~~f~~~~~~~l~~ 320 (322)
T 1yoe_A 288 DYYYL-------TGNKPNATVMVDVDRQGFVDLLADRLKF 320 (322)
T ss_dssp CTTCC-------SSCCCCEEEEEEECHHHHHHHHHHHHGG
T ss_pred ecccc-------CCCCCCeEEEeecCHHHHHHHHHHHHHh
Confidence 98653 2356899999999999999999999864
No 7
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=99.90 E-value=1.3e-23 Score=149.27 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHcC-ChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEe-cCcccceeee
Q 033414 1 MTDADRDKLVCSN-GKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQT-SGITRGLTLL 78 (119)
Q Consensus 1 lt~~~~~~l~~~~-~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~-~g~trG~tv~ 78 (119)
+|++++++|++.+ ++.++|+.+++.+|..++. ..+..|+++|||+|++++++|++|++++.+|+||+ +|++||+|++
T Consensus 229 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lhDplAva~~l~P~l~~~~~~~v~Ve~~~g~t~G~Tv~ 307 (338)
T 3epw_A 229 VRSPYVQRFGEQTNFLLSILVGTMWAMCTHCEL-LRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVR 307 (338)
T ss_dssp CCHHHHHGGGGGTTSHHHHHHHHHHHTTTTHHH-HSTTCCCBCHHHHHHHHHHCGGGCEEEEEEEEECCSSSTTTTCEEE
T ss_pred CCHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh-hccCCCCcCchHHHHHHHcCccceEEEEEEEEEEeCCCCCCceEEE
Confidence 5789999998765 5899999998877643332 23446889999999999999999999999999999 5699999999
Q ss_pred eccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 79 YNKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
|+++ ..+|++|++++|.++|+++|+++|.+
T Consensus 308 d~~~----------~~~n~~V~~~vD~~~F~~~~~~~l~~ 337 (338)
T 3epw_A 308 TDAE----------NYPLTFVARNPEAEFFLDMLLRSARA 337 (338)
T ss_dssp CCCT----------TCCEEEEEESCCHHHHHHHHHHHTTC
T ss_pred ecCC----------CCCceEEeeccCHHHHHHHHHHHHhh
Confidence 9753 35799999999999999999999875
No 8
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=99.84 E-value=3.2e-21 Score=135.76 Aligned_cols=105 Identities=14% Similarity=0.067 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHcC-ChhhHHHHHHHHHHHHhchhhcCCCcccCchHHHHHHHhcCCcceeeeeeEEEEecCcccceeeee
Q 033414 1 MTDADRDKLVCSN-GKHAQYLCKILEVYFSYHHDAYNTKGVYLHDPTALLVAVNPSLFTYMEAVIRVQTSGITRGLTLLY 79 (119)
Q Consensus 1 lt~~~~~~l~~~~-~~~~~~~~~~~~~y~~~~~~~~g~~g~~lhD~lava~ll~P~l~~~~~~~v~Ve~~g~trG~tv~d 79 (119)
+|++++++|++.+ ++.++++.+++++|..+ ....+..++++|||+|++++++|++|++++.+|+|+++|.+||+|++|
T Consensus 204 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lhD~lava~~~~p~l~~~~~~~v~V~~~g~~~G~tv~d 282 (312)
T 2c40_A 204 LTIDIREQWAKERKYIGIDFLGQCYAIVPPL-VHFAKNSTYYLWDVLTAAFVGKADLAKVQTINSIVHTYGPSQGRTVET 282 (312)
T ss_dssp CCHHHHHHHHHTTTSHHHHHHHHHHHTSCCC---------CBCHHHHHHHHHHCGGGSEEEEEEEEECCSSTTTTCEEEE
T ss_pred cCHHHHHHHHhcCCChHHHHHHHHHHhhhhh-hhhcccCCCcccCHHHHHHHcCccceeeEEEEEEEEeCCCCCceEEEe
Confidence 5789999999876 58888888876644111 111124578999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCceEEEeecCHHHHHHHHHHHhcc
Q 033414 80 NKQKRFAEITEWSDKPWVKVAVTVDAPAVYKLFMDRLMD 118 (119)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~vD~~~f~~~~~~~l~~ 118 (119)
+.+ ++++|++++|.++|+++|+++|.+
T Consensus 283 ~~~------------~~~~v~~~vD~~~f~~~~~~~l~~ 309 (312)
T 2c40_A 283 DDG------------RPVHVVYDVNHDRFFDYITRLAKK 309 (312)
T ss_dssp EEE------------EEEEEEECCCHHHHHHHHHHHHC-
T ss_pred cCC------------CceEEEeecCHHHHHHHHHHHHhh
Confidence 642 459999999999999999999875
No 9
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=23.89 E-value=70 Score=15.24 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.1
Q ss_pred CHHHHHHHH----HcCChhhHHHHHHHHHHHHhc
Q 033414 2 TDADRDKLV----CSNGKHAQYLCKILEVYFSYH 31 (119)
Q Consensus 2 t~~~~~~l~----~~~~~~~~~~~~~~~~y~~~~ 31 (119)
+++..++|. ..+-..+.++.+.+..|.+.+
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~ 50 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNH 50 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 445555444 246778899999988887643
No 10
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.75 E-value=71 Score=15.26 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=14.1
Q ss_pred CCHHHHHHHHH----cCChhhHHHHHH
Q 033414 1 MTDADRDKLVC----SNGKHAQYLCKI 23 (119)
Q Consensus 1 lt~~~~~~l~~----~~~~~~~~~~~~ 23 (119)
||+++.+.|.+ .|-.++.|+.++
T Consensus 22 lt~eE~~~l~~~A~~~g~s~SeyiR~~ 48 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLTVSAYIRNA 48 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46777777763 344566666554
No 11
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=23.21 E-value=1.2e+02 Score=18.38 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred CCHHHH---HHHHHcCChhhHHHHHHHHHHHH
Q 033414 1 MTDADR---DKLVCSNGKHAQYLCKILEVYFS 29 (119)
Q Consensus 1 lt~~~~---~~l~~~~~~~~~~~~~~~~~y~~ 29 (119)
||+++. .++.+.|...+.....++.||-.
T Consensus 21 Lt~eQk~EI~kMk~~gksk~~v~~KI~efye~ 52 (134)
T 2xv9_A 21 LSQEQKDELLKMKKDGKAKKELEAKILHYYDE 52 (134)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455554 45555666788999999999874
No 12
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=22.75 E-value=99 Score=16.58 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHH-HcCChhhHHHHHHHHHHHHhc
Q 033414 6 RDKLV-CSNGKHAQYLCKILEVYFSYH 31 (119)
Q Consensus 6 ~~~l~-~~~~~~~~~~~~~~~~y~~~~ 31 (119)
++.+. ..+...+.++.+.++.|...+
T Consensus 24 Ld~la~~~g~srselireAi~~yl~~~ 50 (80)
T 2k5j_A 24 LDDLEVQRNLPRADLLREAVDQYLINQ 50 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34444 356778899999999888654
No 13
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=22.72 E-value=41 Score=18.65 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.2
Q ss_pred CHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 033414 2 TDADRDKLVCSNGKHAQYLCKILEVYFS 29 (119)
Q Consensus 2 t~~~~~~l~~~~~~~~~~~~~~~~~y~~ 29 (119)
++.++..|...|..+++.+.+.+.-|.+
T Consensus 56 s~~e~~~L~giG~ki~~~L~e~L~~~c~ 83 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDEKLKQHLA 83 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777776654
No 14
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=22.58 E-value=68 Score=14.61 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=18.2
Q ss_pred HHHHHHH-cCChhhHHHHHHHHHHHHh
Q 033414 5 DRDKLVC-SNGKHAQYLCKILEVYFSY 30 (119)
Q Consensus 5 ~~~~l~~-~~~~~~~~~~~~~~~y~~~ 30 (119)
.++.+.+ .|-+.+.++.+.++.|.+.
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3444443 4667889999999888764
No 15
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=21.73 E-value=39 Score=20.29 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCcce-eeeee
Q 033414 45 PTALLVAVNPSLFT-YMEAV 63 (119)
Q Consensus 45 ~lava~ll~P~l~~-~~~~~ 63 (119)
.+|=+|++||+-|. ...+.
T Consensus 68 ~mAkSYLvDp~~f~~G~~Y~ 87 (128)
T 1sf9_A 68 TMAKAYLLNPEDYSPGETYR 87 (128)
T ss_dssp HHHHHHHSCGGGSCTTCEEE
T ss_pred HHHHHHcCCHhhccCCCEEE
Confidence 35778999999887 44443
No 16
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=20.89 E-value=62 Score=19.42 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 033414 1 MTDADRDKLVCSNGKHAQYLCKILEVYFS 29 (119)
Q Consensus 1 lt~~~~~~l~~~~~~~~~~~~~~~~~y~~ 29 (119)
|++++.++|...+..+++-+.+.+.-|.+
T Consensus 66 Ls~~D~~~l~~~~~~l~~el~~~l~~~a~ 94 (132)
T 2lc0_A 66 LGVHDFEKLGADPELKSTGFARDLADYIQ 94 (132)
T ss_dssp EEHHHHHHHCSCSHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 46788888877666666666665555543
Done!