Query 033416
Match_columns 119
No_of_seqs 105 out of 200
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 22:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efv_A Hypothetical protein MJ 22.1 26 0.00089 24.4 0.7 16 27-42 59-74 (92)
2 2do3_A Transcription elongatio 17.3 30 0.001 22.7 0.2 16 56-71 15-30 (69)
3 1w6g_A Phenylethylamine oxidas 15.2 33 0.0011 30.6 -0.0 17 56-72 292-308 (646)
4 1ksi_A Copper amine oxidase; P 14.6 34 0.0011 30.4 -0.2 16 56-71 291-306 (642)
5 2qnu_A Uncharacterized protein 14.1 47 0.0016 25.6 0.6 29 38-66 6-40 (226)
6 1spu_A Copper amine oxidase; o 13.7 36 0.0012 30.6 -0.2 16 56-71 379-394 (727)
7 2gfg_A BH2851; antiparallel ba 12.5 57 0.002 23.6 0.6 16 57-72 39-54 (193)
8 3tj7_A GBAA_1210 protein; stru 12.0 60 0.0021 24.0 0.6 16 57-72 39-54 (195)
9 1bpo_A Protein (clathrin); cla 11.7 37 0.0012 29.7 -0.8 34 32-68 348-381 (494)
10 1yb0_A Prophage lambdaba02, N- 10.5 64 0.0022 22.7 0.3 31 34-66 114-149 (159)
No 1
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=22.13 E-value=26 Score=24.40 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHhCCC
Q 033416 27 SSEEEEAALKKKYGGI 42 (119)
Q Consensus 27 ~~~~eE~kL~~KYG~L 42 (119)
..+++|+++..|||+.
T Consensus 59 tLsdeEe~IieKyGKa 74 (92)
T 2efv_A 59 TLTEEEEVIIQRLGKS 74 (92)
T ss_dssp ECCHHHHHHHHHHGGG
T ss_pred EecHHHHHHHHHHhHH
Confidence 4678999999999963
No 2
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=17.28 E-value=30 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.0
Q ss_pred CccccchhhhhhhcCC
Q 033416 56 RAYFDSADWALGKQGV 71 (119)
Q Consensus 56 RKYFDSgDyam~Kag~ 71 (119)
||||.-||+..-=+|+
T Consensus 15 rK~F~~GDHVkVi~G~ 30 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGR 30 (69)
T ss_dssp CSSCCTTCEEEESSST
T ss_pred eeeccCCCeEEEeccE
Confidence 8999999987666664
No 3
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=15.23 E-value=33 Score=30.55 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=13.2
Q ss_pred CccccchhhhhhhcCCC
Q 033416 56 RAYFDSADWALGKQGVE 72 (119)
Q Consensus 56 RKYFDSgDyam~Kag~~ 72 (119)
+.|||+|||-|+.....
T Consensus 292 k~afD~GeyG~G~~an~ 308 (646)
T 1w6g_A 292 QNYFDTGEYLVGQYANS 308 (646)
T ss_dssp CEEECCCCCCGGGGBCC
T ss_pred ceeeeccCcCCcccccc
Confidence 46999999998775443
No 4
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=14.61 E-value=34 Score=30.44 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=12.2
Q ss_pred CccccchhhhhhhcCC
Q 033416 56 RAYFDSADWALGKQGV 71 (119)
Q Consensus 56 RKYFDSgDyam~Kag~ 71 (119)
+.|||+|||-|+....
T Consensus 291 k~~fD~GeyG~G~~a~ 306 (642)
T 1ksi_A 291 KTFFDSGEFGFGLSTV 306 (642)
T ss_dssp CEECHHHHHCTTTTBC
T ss_pred ceeeeccccCcccccc
Confidence 4699999998866443
No 5
>2qnu_A Uncharacterized protein PA0076; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MLZ PGE; 2.05A {Pseudomonas aeruginosa PAO1}
Probab=14.14 E-value=47 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=19.2
Q ss_pred HhCCCCCCCCcccccccc------Cccccchhhhh
Q 033416 38 KYGGIVPKKPPLISKDHE------RAYFDSADWAL 66 (119)
Q Consensus 38 KYG~L~~Kk~~L~~k~ke------RKYFDSgDyam 66 (119)
-|||||.+.+|+..++.. -.+|..|=.++
T Consensus 6 ~fGKlPa~GDFV~~~lp~~~v~~wD~Wlq~~l~~~ 40 (226)
T 2qnu_A 6 FYGXLAGRGDFVSRGLPNTFVEPWDAWLASGMRAS 40 (226)
T ss_dssp EEECCTTCSSCEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 399999999998777621 23555554443
No 6
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=13.67 E-value=36 Score=30.56 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=12.3
Q ss_pred CccccchhhhhhhcCC
Q 033416 56 RAYFDSADWALGKQGV 71 (119)
Q Consensus 56 RKYFDSgDyam~Kag~ 71 (119)
+.|||+|||-|+....
T Consensus 379 k~~fD~GeyG~G~~a~ 394 (727)
T 1spu_A 379 KAYLDSGDYGMGTLTS 394 (727)
T ss_dssp CEECHHHHHCTTTTBC
T ss_pred ceeeeccCcCCccccc
Confidence 4699999998866443
No 7
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=12.49 E-value=57 Score=23.56 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=14.7
Q ss_pred ccccchhhhhhhcCCC
Q 033416 57 AYFDSADWALGKQGVE 72 (119)
Q Consensus 57 KYFDSgDyam~Kag~~ 72 (119)
-|||..|..|.+++..
T Consensus 39 ~YfDTpd~~L~~~~~a 54 (193)
T 2gfg_A 39 HYFETDDFQLKKQSSA 54 (193)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EeeeCCCHHHHhCCCE
Confidence 6999999999999975
No 8
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=11.97 E-value=60 Score=24.04 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=14.6
Q ss_pred ccccchhhhhhhcCCC
Q 033416 57 AYFDSADWALGKQGVE 72 (119)
Q Consensus 57 KYFDSgDyam~Kag~~ 72 (119)
-|||..|+.|.+++..
T Consensus 39 ~YfDTpd~~L~~~~~~ 54 (195)
T 3tj7_A 39 HYFETPNSSLKEAGSA 54 (195)
T ss_dssp EEEECTTCHHHHTTCE
T ss_pred EEEeCCcHhHHhCCCE
Confidence 6999999999999975
No 9
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=11.70 E-value=37 Score=29.71 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCCCCccccccccCccccchhhhhhh
Q 033416 32 EAALKKKYGGIVPKKPPLISKDHERAYFDSADWALGK 68 (119)
Q Consensus 32 E~kL~~KYG~L~~Kk~~L~~k~keRKYFDSgDyam~K 68 (119)
-.+|..+|| ||.--++++++.+ .||..|||.=+.
T Consensus 348 A~~lA~R~~-LpGAd~L~~~~F~--~l~~~g~y~~AA 381 (494)
T 1bpo_A 348 ALRMAVRNN-LAGAEELFARKFN--ALFAQGNYSEAA 381 (494)
T ss_dssp HHHHHHHTT-CSSCHHHHHHHHH--HHHHTTCHHHHH
T ss_pred HHHHHHhcC-CccHHHHHHHHHH--HHHHcCCHHHHH
Confidence 346667777 8888778888887 599999996554
No 10
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Probab=10.47 E-value=64 Score=22.69 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHHHHhCCCCCCCCccccccccCc-----cccchhhhh
Q 033416 34 ALKKKYGGIVPKKPPLISKDHERA-----YFDSADWAL 66 (119)
Q Consensus 34 kL~~KYG~L~~Kk~~L~~k~keRK-----YFDSgDyam 66 (119)
.|.++|| |++. .++.|++-.|| +|+.|.|.-
T Consensus 114 ~l~~~y~-i~~~-~I~gH~di~~k~cPg~~~~~~~W~~ 149 (159)
T 1yb0_A 114 QLMSMYN-IPIE-NVRTHQSWSGKYCPHRMLAEGRWGA 149 (159)
T ss_dssp HHHHHHT-CCGG-GEEEHHHHHCCCCSHHHHHTTCHHH
T ss_pred HHHHHhC-CChh-hEEccccCCCCCCCcccccCCcHHH
Confidence 3778898 6654 46777653333 677666653
Done!