BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033417
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 23 IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
+A + A E K KGNEY KKG Y A+ R N+ V D EN++LY+NRA
Sbjct: 5 LAYINPELAQEEKNKGNEYFKKG--DYPTAM----RHYNEAVKRDPENAILYSNRAACLT 58
Query: 83 LLGNYRRALTDTEEALKLCPTNVKVVI 109
L ++RAL D + ++L +K I
Sbjct: 59 KLMEFQRALDDCDTCIRLDSKFIKGYI 85
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
A+ +K KGNE +KG Y A+ YT AI +N +++ LY+NRA L ++ A
Sbjct: 16 ALMVKNKGNECFQKG--DYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLA 69
Query: 91 LTDTEEALKLCPTNVK 106
L D EE ++L PT +K
Sbjct: 70 LKDCEECIQLEPTFIK 85
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
+K +A ELKE+GN G+K Y +A CY RAI +N L +V Y NRA L +
Sbjct: 4 MKSPSAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ 57
Query: 86 NYRRALTDTEEALKLCPTNVKV 107
+AL D AL+L +VK
Sbjct: 58 QPEQALADCRRALELDGQSVKA 79
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
+A ELKE+GN G+K Y +A CY RAI +N L +V Y NRA L + +
Sbjct: 3 SAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQ 56
Query: 90 ALTDTEEALKLCPTNVK 106
AL D AL+L +VK
Sbjct: 57 ALADCRRALELDGQSVK 73
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94
KE+GN K+G Y +A+ CY +Q + + +N V Y+N+A + LG Y +A+
Sbjct: 8 KEQGNSLFKQGL--YREAVHCY----DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 95 EEALKLCPTNVKVVI 109
++ L+ T V I
Sbjct: 62 QQGLRYTSTAEHVAI 76
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
ELKEKGN+ + G + DA+ CY+ AI D N VLY+NR+ G+Y++A
Sbjct: 6 ELKEKGNKALSVG--NIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Query: 93 DTEEALKLCP 102
D + + L P
Sbjct: 60 DGCKTVDLKP 69
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
GN Y K+G Y AI+ Y +A+ D N+ + R + G+Y++A+ D ++A
Sbjct: 50 GNAYYKQG--DYQKAIEYYQKALE----LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Query: 98 LKLCPTNVKV 107
L+L P N K
Sbjct: 104 LELDPNNAKA 113
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
++A K GN Y K+G Y AI+ Y +A+ D N+ + N + G+Y+
Sbjct: 7 NSAEAWKNLGNAYYKQG--DYQKAIEYYQKALE----LDPNNASAWYNLGNAYYKQGDYQ 60
Query: 89 RALTDTEEALKLCPTNVKV 107
+A+ ++AL+L P N K
Sbjct: 61 KAIEYYQKALELDPNNAKA 79
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 31 AIELKEKGNEYV--------KKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
AIEL + N Y+ + YY+ D + DS NS +Y +R +N
Sbjct: 263 AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNNSSVYYHRGQMNF 315
Query: 83 LLGNYRRALTDTEEALKLCPTNV--KVVILCSGSHPNQF 119
+L NY +A D ++A +L P N+ + + C N+F
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
K+ A+ LK+KGN++ + K Y DAI Y A L E+ V Y+N + + +G+
Sbjct: 2 KDKYALALKDKGNQFFR--NKKYDDAIKYYNWA-----LELKEDPVFYSNLSACYVSVGD 54
Query: 87 YRRALTDTEEALKLCPTNVKVVI 109
++ + + +AL+L P KV++
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLL 77
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93
LK +GNE +K +++ A+ Y +AI N N+V + NRA LGNY A+ D
Sbjct: 15 LKTEGNEQMKV--ENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 94 TEEALKLCPTNVKV 107
E A+ + P K
Sbjct: 69 CERAICIDPAYSKA 82
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
+LK +GN + +K Y AID YT+A++ N + +NRA G + +A
Sbjct: 13 KLKSEGNAAM--ARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAE 66
Query: 93 DTEEALKLCPTNVKV 107
D E A + P K
Sbjct: 67 DAELATVVDPKYSKA 81
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A+ ++A
Sbjct: 16 GNAYYKQG--DYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 98 LKLCPTNVKV 107
L+L P N +
Sbjct: 70 LELDPNNAEA 79
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A+ ++A
Sbjct: 16 GNAYYKQGD--YDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 98 LKLCPTNVKVVILCSGSHPNQ 118
L+L P N + ++ Q
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQ 90
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A+ ++A
Sbjct: 50 GNAYYKQGD--YDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 98 LKLCPTNVKV 107
L+L P N +
Sbjct: 104 LELDPNNAEA 113
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 44 KGKKHYYDAIDCYTRAINQ--------NVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95
+G+K Y+D + Y+ A+NQ N L + + +RA N +LG Y +T
Sbjct: 74 EGRK-YFDFLSSYS-AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF 131
Query: 96 EALKLCPTNVKV 107
K+ P N V
Sbjct: 132 NYHKVLPMNTGV 143
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-------YRRA 90
GN Y K+G Y +AI+ Y +A+ LY N A LGN Y A
Sbjct: 16 GNAYYKQGD--YDEAIEYYQKALE-----------LYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 91 LTDTEEALKLCPTNVKVVILCSGSHPNQ 118
+ ++AL+L P N + ++ Q
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQ 90
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 20/77 (25%)
Query: 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-------YRRA 90
GN Y K+G Y +AI+ Y +A+ LY N A LGN Y A
Sbjct: 50 GNAYYKQGD--YDEAIEYYQKALE-----------LYPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 91 LTDTEEALKLCPTNVKV 107
+ ++AL+L P N +
Sbjct: 97 IEYYQKALELYPNNAEA 113
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 52 AIDCYTRAINQN-VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102
A+ CYTRAI N +D+ ++N A ++ GN A+ ALKL P
Sbjct: 96 ALQCYTRAIQINPAFADA-----HSNLASIHKDSGNIPEAIASYRTALKLKP 142
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 44 KGKKHYYDAIDCYTRAINQ--------NVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95
+G+K Y+D + Y+ A+NQ N L + + +RA N +LG Y +T
Sbjct: 37 EGRK-YFDFLSSYS-AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF 94
Query: 96 EALKLCPTNVKV 107
K+ P N V
Sbjct: 95 NYHKVLPMNTGV 106
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 236 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 294
Query: 100 LCPTNVKVVILCSGS 114
L N ++ + GS
Sbjct: 295 LTAGN-QIGLFSYGS 308
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 237 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 295
Query: 100 LCPTNVKVVILCSGS 114
L N ++ + GS
Sbjct: 296 LTAGN-QIGLFSYGS 309
>pdb|3PAY|A Chain A, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|B Chain B, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|C Chain C, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|D Chain D, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
Length = 314
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 40 EYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93
E+V Y DA + ++++ V DS++ +L+ V L+G R +LTD
Sbjct: 18 EFVFDYNXEYADAFNPQVKSVDVLVF-DSDDKLLFTKSVKVAALVGGNRXSLTD 70
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 255 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 313
Query: 100 LCPTN 104
L N
Sbjct: 314 LTAGN 318
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 236 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 294
Query: 100 LCPTN 104
L N
Sbjct: 295 LTAGN 299
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 241 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 299
Query: 100 LCPTN 104
L N
Sbjct: 300 LTAGN 304
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99
Y K GKK I T A + +L+ E S++Y+ R NL G+ Y ++ E A
Sbjct: 241 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVG-NLYTGSLYLGLISLLENATT 299
Query: 100 LCPTN 104
L N
Sbjct: 300 LTAGN 304
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 27 KESAAIELKEKGNEYVKKGKKH-----YYDAIDCY--TRAINQNVLSDSENSVLYANRAH 79
K +A ++KE+GNE+ KK + + Y +A+D + T + +L D + ++
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI----EIS 89
Query: 80 VNLLLG-------NYRRALTDTEEALKLCPTNVKVV 108
NL L +Y +A+ + LK+ NVK +
Sbjct: 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL 125
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 31 AIELK-EKGNEYVKKGK-----KHYYDAIDCYTRAINQNVLSDSENSVLYANRA 78
AI+L E+ ++ KGK + Y +A+DCY I NV+ D N ++A +A
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVWAAKA 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,400,139
Number of Sequences: 62578
Number of extensions: 123033
Number of successful extensions: 268
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 49
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)