Query 033417
Match_columns 119
No_of_seqs 136 out of 1884
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 13:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.7 2.4E-17 5.1E-22 114.2 9.0 85 28-118 78-162 (304)
2 KOG0548 Molecular co-chaperone 99.7 4E-16 8.6E-21 114.6 11.1 97 14-116 341-437 (539)
3 PRK15359 type III secretion sy 99.7 1.2E-15 2.7E-20 97.3 11.1 96 14-115 41-136 (144)
4 PRK15359 type III secretion sy 99.6 5.1E-15 1.1E-19 94.4 11.5 91 18-117 14-104 (144)
5 KOG0547 Translocase of outer m 99.6 9.3E-16 2E-20 112.1 7.9 83 28-116 112-194 (606)
6 PF13414 TPR_11: TPR repeat; P 99.6 5.8E-15 1.3E-19 82.7 8.9 67 30-102 2-69 (69)
7 PRK15363 pathogenicity island 99.5 1.1E-13 2.4E-18 88.8 10.0 92 20-117 23-115 (157)
8 KOG0551 Hsp90 co-chaperone CNS 99.5 7.4E-14 1.6E-18 98.2 9.5 113 3-117 47-165 (390)
9 TIGR02552 LcrH_SycD type III s 99.5 2.1E-13 4.6E-18 85.3 10.1 92 19-116 5-96 (135)
10 KOG4234 TPR repeat-containing 99.5 9.5E-14 2.1E-18 92.2 7.9 87 29-117 93-180 (271)
11 PLN03088 SGT1, suppressor of 99.5 4.7E-13 1E-17 96.6 11.3 97 13-115 18-114 (356)
12 PF13432 TPR_16: Tetratricopep 99.5 7.5E-13 1.6E-17 73.3 8.9 65 35-105 1-65 (65)
13 KOG0553 TPR repeat-containing 99.5 4E-13 8.6E-18 93.3 9.4 94 14-113 98-191 (304)
14 PRK10370 formate-dependent nit 99.5 7.1E-13 1.5E-17 88.7 9.9 99 13-117 55-156 (198)
15 KOG0550 Molecular chaperone (D 99.5 2E-13 4.3E-18 98.4 7.4 89 27-117 245-333 (486)
16 PRK11189 lipoprotein NlpI; Pro 99.4 2.6E-12 5.7E-17 90.6 11.7 96 15-116 44-143 (296)
17 PLN03088 SGT1, suppressor of 99.4 1E-12 2.2E-17 94.9 9.5 80 32-117 3-82 (356)
18 TIGR00990 3a0801s09 mitochondr 99.4 2.4E-12 5.2E-17 98.5 10.6 95 15-115 349-443 (615)
19 KOG0543 FKBP-type peptidyl-pro 99.4 2.3E-12 4.9E-17 92.7 9.0 86 30-117 207-303 (397)
20 PRK11189 lipoprotein NlpI; Pro 99.4 6.7E-12 1.5E-16 88.6 11.2 88 13-106 80-167 (296)
21 KOG4626 O-linked N-acetylgluco 99.4 2.1E-12 4.5E-17 97.4 8.9 92 16-113 407-498 (966)
22 PRK15363 pathogenicity island 99.4 8.5E-12 1.8E-16 80.1 10.5 83 13-101 51-133 (157)
23 KOG4626 O-linked N-acetylgluco 99.4 3.6E-12 7.8E-17 96.1 9.5 98 13-116 370-467 (966)
24 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 3E-16 77.0 10.8 90 13-108 33-122 (135)
25 TIGR00990 3a0801s09 mitochondr 99.4 5.8E-12 1.3E-16 96.4 10.5 99 13-117 381-479 (615)
26 KOG0548 Molecular co-chaperone 99.4 1.4E-12 3.1E-17 96.2 6.6 80 31-116 2-81 (539)
27 PRK12370 invasion protein regu 99.4 6.5E-12 1.4E-16 95.3 10.2 96 13-114 320-415 (553)
28 KOG4648 Uncharacterized conser 99.3 3.1E-12 6.6E-17 91.1 5.9 80 30-115 96-175 (536)
29 PF13371 TPR_9: Tetratricopept 99.3 2.6E-11 5.7E-16 68.3 8.4 70 38-113 2-71 (73)
30 PRK12370 invasion protein regu 99.3 3.3E-11 7.2E-16 91.4 10.7 101 13-117 277-384 (553)
31 PRK09782 bacteriophage N4 rece 99.3 3.7E-11 7.9E-16 96.0 11.1 98 13-117 592-689 (987)
32 PF14559 TPR_19: Tetratricopep 99.3 2.8E-11 6.2E-16 67.3 7.1 66 42-113 2-67 (68)
33 PRK15179 Vi polysaccharide bio 99.3 4.9E-11 1.1E-15 92.4 10.6 100 12-117 101-200 (694)
34 KOG4642 Chaperone-dependent E3 99.3 1.2E-11 2.6E-16 84.0 5.5 82 30-117 9-90 (284)
35 KOG0547 Translocase of outer m 99.2 2.7E-11 5.8E-16 89.1 6.9 97 15-117 344-440 (606)
36 PRK09782 bacteriophage N4 rece 99.2 5.1E-11 1.1E-15 95.2 8.8 98 13-116 625-722 (987)
37 PF13424 TPR_12: Tetratricopep 99.2 1E-10 2.2E-15 66.8 7.7 73 27-101 1-76 (78)
38 KOG1125 TPR repeat-containing 99.2 2.6E-11 5.6E-16 90.2 6.2 90 22-117 419-510 (579)
39 PRK02603 photosystem I assembl 99.2 2.1E-10 4.6E-15 74.9 9.9 87 27-116 31-117 (172)
40 KOG0545 Aryl-hydrocarbon recep 99.2 8.6E-11 1.9E-15 80.3 7.8 85 30-116 177-275 (329)
41 KOG1126 DNA-binding cell divis 99.2 2.2E-11 4.7E-16 91.7 5.3 93 20-118 410-502 (638)
42 PLN02789 farnesyltranstransfer 99.2 2.9E-10 6.2E-15 81.2 10.7 97 15-115 90-186 (320)
43 KOG1155 Anaphase-promoting com 99.2 3.6E-10 7.7E-15 82.9 11.1 100 14-115 347-476 (559)
44 KOG1155 Anaphase-promoting com 99.2 2.2E-10 4.8E-15 83.9 9.6 80 30-115 329-408 (559)
45 PLN02789 farnesyltranstransfer 99.2 7.5E-10 1.6E-14 79.1 12.2 101 11-116 51-153 (320)
46 PF12895 Apc3: Anaphase-promot 99.2 2.4E-10 5.2E-15 66.3 8.0 78 13-97 5-84 (84)
47 PRK10370 formate-dependent nit 99.2 2.5E-10 5.5E-15 76.4 8.9 87 13-105 89-178 (198)
48 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 1.5E-10 3.3E-15 84.9 7.7 69 26-100 70-141 (453)
49 PRK15174 Vi polysaccharide exp 99.1 5E-10 1.1E-14 86.6 10.5 94 16-115 269-362 (656)
50 TIGR02521 type_IV_pilW type IV 99.1 7.8E-10 1.7E-14 73.3 10.2 95 15-115 49-179 (234)
51 PRK15174 Vi polysaccharide exp 99.1 4.2E-10 9.1E-15 87.0 10.0 99 13-117 228-330 (656)
52 cd00189 TPR Tetratricopeptide 99.1 9E-10 1.9E-14 62.7 9.1 74 35-114 4-77 (100)
53 CHL00033 ycf3 photosystem I as 99.1 1.2E-09 2.5E-14 71.1 10.6 86 28-116 32-117 (168)
54 COG3063 PilF Tfp pilus assembl 99.1 2.7E-10 6E-15 77.0 7.7 97 16-116 88-184 (250)
55 TIGR02521 type_IV_pilW type IV 99.1 1.1E-09 2.5E-14 72.5 10.7 81 30-116 30-110 (234)
56 COG5010 TadD Flp pilus assembl 99.1 7.1E-10 1.5E-14 75.9 9.0 93 18-116 87-179 (257)
57 KOG0624 dsRNA-activated protei 99.1 4E-10 8.6E-15 80.4 7.9 87 26-118 33-119 (504)
58 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.3E-09 7.2E-14 64.3 10.8 91 13-109 18-114 (119)
59 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.4E-09 2.9E-14 66.0 8.9 80 31-116 2-87 (119)
60 KOG1126 DNA-binding cell divis 99.1 3.7E-10 8E-15 85.2 7.6 98 13-116 471-568 (638)
61 cd00189 TPR Tetratricopeptide 99.1 2.6E-09 5.6E-14 60.7 9.3 85 13-103 16-100 (100)
62 COG3063 PilF Tfp pilus assembl 99.1 2E-09 4.3E-14 72.9 9.2 96 15-116 53-150 (250)
63 KOG0543 FKBP-type peptidyl-pro 99.0 5.3E-09 1.1E-13 75.6 11.3 78 31-114 257-334 (397)
64 TIGR03302 OM_YfiO outer membra 99.0 1.2E-09 2.7E-14 74.2 7.9 85 27-117 29-119 (235)
65 PF13429 TPR_15: Tetratricopep 99.0 1.5E-09 3.3E-14 75.7 8.0 88 28-117 143-260 (280)
66 KOG0376 Serine-threonine phosp 99.0 8.1E-11 1.8E-15 86.3 1.6 81 31-117 4-84 (476)
67 PRK11447 cellulose synthase su 99.0 2.4E-09 5.1E-14 87.3 10.0 98 13-116 285-396 (1157)
68 PRK15331 chaperone protein Sic 99.0 2.5E-09 5.5E-14 69.1 7.9 89 23-117 29-117 (165)
69 TIGR02917 PEP_TPR_lipo putativ 99.0 3.7E-09 8.1E-14 82.0 10.1 96 14-116 787-882 (899)
70 PRK11447 cellulose synthase su 99.0 4.2E-09 9.1E-14 85.9 10.6 99 13-117 367-507 (1157)
71 PRK15179 Vi polysaccharide bio 99.0 6.2E-09 1.3E-13 80.9 10.5 100 12-117 67-166 (694)
72 TIGR02917 PEP_TPR_lipo putativ 99.0 5.3E-09 1.1E-13 81.2 10.0 97 14-116 142-238 (899)
73 PF13414 TPR_11: TPR repeat; P 99.0 1.1E-09 2.4E-14 61.0 4.6 49 69-117 1-49 (69)
74 PRK10049 pgaA outer membrane p 99.0 8.4E-09 1.8E-13 81.1 10.7 95 14-115 66-160 (765)
75 PF12895 Apc3: Anaphase-promot 98.9 1.1E-09 2.5E-14 63.4 4.0 65 48-117 4-70 (84)
76 PRK10803 tol-pal system protei 98.9 2.3E-08 5E-13 69.7 10.8 90 15-107 161-253 (263)
77 COG4783 Putative Zn-dependent 98.9 1.3E-08 2.7E-13 75.0 9.8 99 13-117 322-420 (484)
78 KOG1125 TPR repeat-containing 98.9 3.7E-09 8E-14 79.0 6.8 85 13-103 446-530 (579)
79 PRK02603 photosystem I assembl 98.9 3.7E-08 8E-13 64.3 10.7 87 13-105 51-154 (172)
80 TIGR03302 OM_YfiO outer membra 98.9 1.8E-08 3.8E-13 68.5 9.4 90 13-108 49-152 (235)
81 PRK11788 tetratricopeptide rep 98.9 1.7E-08 3.6E-13 73.0 9.8 102 13-116 51-152 (389)
82 PRK11788 tetratricopeptide rep 98.9 2.9E-08 6.4E-13 71.7 10.5 96 15-116 125-225 (389)
83 PRK10049 pgaA outer membrane p 98.9 2.1E-08 4.6E-13 78.9 10.4 97 13-116 31-127 (765)
84 PF06552 TOM20_plant: Plant sp 98.9 6.3E-08 1.4E-12 63.4 10.8 94 14-111 8-120 (186)
85 KOG1173 Anaphase-promoting com 98.9 7E-09 1.5E-13 77.5 7.0 99 16-116 399-500 (611)
86 KOG3060 Uncharacterized conser 98.9 6.9E-08 1.5E-12 66.4 10.6 95 13-113 136-233 (289)
87 COG4235 Cytochrome c biogenesi 98.9 4.2E-08 9.1E-13 68.6 9.8 97 15-117 140-239 (287)
88 PF13525 YfiO: Outer membrane 98.8 4E-08 8.6E-13 66.0 9.4 85 30-117 4-91 (203)
89 CHL00033 ycf3 photosystem I as 98.8 9.1E-08 2E-12 62.2 10.8 87 13-105 51-154 (168)
90 PRK10866 outer membrane biogen 98.8 7.5E-08 1.6E-12 66.4 10.3 80 30-115 31-116 (243)
91 PF00515 TPR_1: Tetratricopept 98.8 1.4E-08 3.1E-13 48.9 4.7 34 71-104 1-34 (34)
92 PF13428 TPR_14: Tetratricopep 98.8 2.4E-08 5.2E-13 51.1 5.8 44 71-114 1-44 (44)
93 PRK15331 chaperone protein Sic 98.8 5.9E-08 1.3E-12 62.8 8.8 86 14-106 54-139 (165)
94 PF13512 TPR_18: Tetratricopep 98.8 9.1E-08 2E-12 60.7 9.4 84 31-117 10-96 (142)
95 KOG2076 RNA polymerase III tra 98.8 1E-07 2.2E-12 74.4 10.8 97 14-116 156-252 (895)
96 KOG0624 dsRNA-activated protei 98.8 5.7E-08 1.2E-12 69.6 8.5 92 16-113 57-151 (504)
97 KOG4234 TPR repeat-containing 98.8 2.3E-07 4.9E-12 62.2 10.7 76 30-111 133-208 (271)
98 KOG4162 Predicted calmodulin-b 98.8 1.2E-07 2.6E-12 73.1 10.2 99 13-117 666-766 (799)
99 KOG0550 Molecular chaperone (D 98.7 9.6E-09 2.1E-13 74.6 3.9 82 30-117 48-129 (486)
100 KOG2002 TPR-containing nuclear 98.7 7.8E-08 1.7E-12 75.6 8.2 97 14-115 147-243 (1018)
101 COG5010 TadD Flp pilus assembl 98.7 2.1E-07 4.6E-12 63.9 9.1 96 14-115 117-212 (257)
102 KOG4555 TPR repeat-containing 98.7 3.4E-07 7.3E-12 57.5 9.0 80 30-115 42-125 (175)
103 PRK10803 tol-pal system protei 98.7 2.5E-07 5.3E-12 64.6 9.4 80 31-116 142-228 (263)
104 PF13429 TPR_15: Tetratricopep 98.7 7.7E-08 1.7E-12 67.1 6.7 98 15-117 95-192 (280)
105 PF07719 TPR_2: Tetratricopept 98.7 9.3E-08 2E-12 45.8 5.1 34 71-104 1-34 (34)
106 PRK11906 transcriptional regul 98.6 2.8E-07 6E-12 68.1 8.9 89 13-107 320-408 (458)
107 PRK10153 DNA-binding transcrip 98.6 4.4E-07 9.5E-12 68.7 10.0 75 27-108 416-490 (517)
108 KOG1173 Anaphase-promoting com 98.6 5.1E-07 1.1E-11 67.8 10.0 79 30-114 454-532 (611)
109 cd05804 StaR_like StaR_like; a 98.6 2E-07 4.3E-12 66.7 7.3 92 19-116 102-197 (355)
110 KOG2076 RNA polymerase III tra 98.6 4.4E-07 9.6E-12 71.0 9.0 85 28-117 411-495 (895)
111 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-06 2.3E-11 64.5 10.4 96 13-117 185-280 (395)
112 KOG1308 Hsp70-interacting prot 98.6 1.8E-08 4E-13 71.6 1.1 81 29-115 112-192 (377)
113 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.7E-07 3.7E-12 69.1 6.0 52 66-117 70-124 (453)
114 PF12688 TPR_5: Tetratrico pep 98.6 1.2E-06 2.6E-11 54.3 8.8 81 13-99 17-103 (120)
115 cd05804 StaR_like StaR_like; a 98.6 5.9E-07 1.3E-11 64.3 8.5 99 16-117 62-160 (355)
116 KOG4648 Uncharacterized conser 98.5 3.4E-07 7.4E-12 65.8 7.1 92 14-111 114-205 (536)
117 PF04733 Coatomer_E: Coatomer 98.5 3.4E-07 7.4E-12 64.7 7.0 98 14-115 148-245 (290)
118 PRK14574 hmsH outer membrane p 98.5 1.1E-06 2.4E-11 69.7 10.3 96 15-116 52-147 (822)
119 PF09976 TPR_21: Tetratricopep 98.5 1.5E-06 3.3E-11 55.2 9.1 98 16-117 30-130 (145)
120 PRK14720 transcript cleavage f 98.5 5E-07 1.1E-11 71.8 7.8 100 13-116 47-161 (906)
121 KOG2003 TPR repeat-containing 98.5 1.6E-07 3.4E-12 69.6 4.4 94 16-115 475-568 (840)
122 KOG4162 Predicted calmodulin-b 98.5 7.2E-07 1.6E-11 68.9 8.1 87 13-105 700-788 (799)
123 PRK11906 transcriptional regul 98.5 2E-06 4.3E-11 63.7 9.6 100 12-115 273-382 (458)
124 COG4785 NlpI Lipoprotein NlpI, 98.5 9.9E-07 2.2E-11 59.8 7.4 84 27-116 61-144 (297)
125 PF13432 TPR_16: Tetratricopep 98.5 6.3E-07 1.4E-11 49.1 5.2 53 13-71 13-65 (65)
126 PF13431 TPR_17: Tetratricopep 98.4 3.2E-07 6.8E-12 44.4 3.3 33 55-91 1-33 (34)
127 PF13371 TPR_9: Tetratricopept 98.4 1.7E-06 3.7E-11 48.3 6.6 61 13-79 11-71 (73)
128 KOG1128 Uncharacterized conser 98.4 5.5E-07 1.2E-11 69.3 5.7 82 30-117 484-565 (777)
129 KOG1156 N-terminal acetyltrans 98.4 1.1E-06 2.3E-11 67.0 6.8 94 16-115 26-119 (700)
130 KOG0376 Serine-threonine phosp 98.4 3.3E-07 7.2E-12 67.7 3.7 96 13-114 20-115 (476)
131 KOG3060 Uncharacterized conser 98.4 6.4E-06 1.4E-10 56.9 9.6 96 15-116 104-199 (289)
132 COG4785 NlpI Lipoprotein NlpI, 98.4 8.1E-07 1.7E-11 60.3 5.0 85 15-105 83-167 (297)
133 PF13512 TPR_18: Tetratricopep 98.4 1.2E-05 2.6E-10 51.0 9.9 89 16-107 29-135 (142)
134 KOG2002 TPR-containing nuclear 98.4 3.4E-06 7.4E-11 66.7 8.9 82 28-115 304-386 (1018)
135 PRK10153 DNA-binding transcrip 98.3 9.7E-06 2.1E-10 61.5 10.7 101 13-116 358-464 (517)
136 TIGR00540 hemY_coli hemY prote 98.3 8E-06 1.7E-10 60.1 9.8 99 13-117 100-199 (409)
137 KOG1174 Anaphase-promoting com 98.3 7.8E-06 1.7E-10 60.0 9.3 92 13-111 420-511 (564)
138 COG1729 Uncharacterized protei 98.3 9.6E-06 2.1E-10 56.3 9.3 81 32-115 142-225 (262)
139 PF13181 TPR_8: Tetratricopept 98.3 1.9E-06 4.2E-11 41.1 4.2 33 72-104 2-34 (34)
140 PF14559 TPR_19: Tetratricopep 98.3 2.9E-06 6.3E-11 46.8 5.5 61 13-79 7-67 (68)
141 PF09976 TPR_21: Tetratricopep 98.3 8.2E-06 1.8E-10 51.8 8.2 79 13-98 64-145 (145)
142 PRK10747 putative protoheme IX 98.3 8.7E-06 1.9E-10 59.8 9.1 82 13-101 310-391 (398)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.8E-06 1.5E-10 60.4 8.1 79 14-98 217-295 (395)
144 PF06552 TOM20_plant: Plant sp 98.2 6.7E-06 1.4E-10 54.1 6.9 66 48-117 6-81 (186)
145 PF13428 TPR_14: Tetratricopep 98.2 3.6E-06 7.8E-11 42.8 4.6 42 32-79 2-43 (44)
146 PRK10866 outer membrane biogen 98.2 2.2E-05 4.7E-10 54.3 9.8 88 15-105 50-158 (243)
147 PRK14574 hmsH outer membrane p 98.2 1.5E-05 3.3E-10 63.4 9.7 86 13-104 84-169 (822)
148 COG4783 Putative Zn-dependent 98.2 1.1E-05 2.3E-10 59.9 8.2 84 28-117 303-386 (484)
149 TIGR00540 hemY_coli hemY prote 98.2 1.7E-05 3.6E-10 58.5 9.2 79 14-99 316-398 (409)
150 KOG4642 Chaperone-dependent E3 98.2 9.3E-06 2E-10 55.7 7.0 80 15-100 28-107 (284)
151 KOG4555 TPR repeat-containing 98.2 3.3E-05 7.1E-10 48.7 8.9 90 14-105 60-149 (175)
152 COG4105 ComL DNA uptake lipopr 98.2 4.9E-05 1.1E-09 52.5 10.6 85 31-118 34-121 (254)
153 PF12688 TPR_5: Tetratrico pep 98.2 8.5E-05 1.8E-09 46.0 10.6 81 32-115 2-85 (120)
154 PF12569 NARP1: NMDA receptor- 98.2 2.8E-05 6E-10 59.1 10.0 80 30-115 3-82 (517)
155 PF00515 TPR_1: Tetratricopept 98.2 7.1E-06 1.5E-10 39.2 4.6 34 31-70 1-34 (34)
156 KOG1128 Uncharacterized conser 98.1 1E-05 2.2E-10 62.5 7.3 90 13-108 501-590 (777)
157 KOG1129 TPR repeat-containing 98.1 1.1E-05 2.5E-10 57.8 7.0 84 18-108 244-327 (478)
158 COG2956 Predicted N-acetylgluc 98.1 2.8E-05 6.1E-10 55.5 8.9 95 15-115 159-259 (389)
159 PRK10747 putative protoheme IX 98.1 4.7E-05 1E-09 56.0 10.5 81 31-117 118-199 (398)
160 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 1.8E-05 4E-10 42.0 6.1 40 72-111 2-41 (53)
161 COG4235 Cytochrome c biogenesi 98.1 4.4E-05 9.5E-10 53.7 9.2 86 15-104 174-260 (287)
162 PF07719 TPR_2: Tetratricopept 98.1 1.2E-05 2.7E-10 38.1 4.7 34 31-70 1-34 (34)
163 KOG1840 Kinesin light chain [C 98.1 5.2E-05 1.1E-09 57.4 10.1 84 15-100 217-312 (508)
164 KOG1129 TPR repeat-containing 98.1 9E-06 1.9E-10 58.3 5.0 89 21-115 314-405 (478)
165 KOG0545 Aryl-hydrocarbon recep 98.0 9.1E-05 2E-09 51.3 9.4 73 30-108 229-301 (329)
166 KOG1127 TPR repeat-containing 98.0 4.5E-05 9.7E-10 61.0 8.7 73 38-116 9-82 (1238)
167 PF04733 Coatomer_E: Coatomer 98.0 5.8E-05 1.3E-09 53.5 8.5 89 13-107 183-272 (290)
168 KOG1174 Anaphase-promoting com 98.0 4.6E-05 9.9E-10 56.1 7.8 64 48-115 315-378 (564)
169 PF13525 YfiO: Outer membrane 98.0 0.00013 2.8E-09 49.0 9.6 90 14-106 22-125 (203)
170 PF12569 NARP1: NMDA receptor- 98.0 6.8E-05 1.5E-09 57.0 9.0 72 33-110 196-267 (517)
171 PF13424 TPR_12: Tetratricopep 98.0 6.2E-06 1.3E-10 46.7 2.6 50 68-117 2-58 (78)
172 KOG1310 WD40 repeat protein [G 98.0 3.1E-05 6.8E-10 58.5 6.7 84 27-116 370-456 (758)
173 KOG1840 Kinesin light chain [C 98.0 6.9E-05 1.5E-09 56.7 8.5 92 24-117 192-295 (508)
174 PRK10941 hypothetical protein; 97.9 0.0002 4.4E-09 50.2 10.1 76 32-113 182-257 (269)
175 KOG2003 TPR repeat-containing 97.9 0.00015 3.3E-09 54.2 9.9 95 15-115 508-602 (840)
176 KOG1156 N-terminal acetyltrans 97.9 7.3E-05 1.6E-09 57.3 8.4 97 13-115 57-153 (700)
177 COG1729 Uncharacterized protei 97.9 0.00021 4.7E-09 49.7 9.9 80 30-112 177-256 (262)
178 smart00028 TPR Tetratricopepti 97.9 3.1E-05 6.7E-10 35.2 4.0 33 72-104 2-34 (34)
179 KOG1308 Hsp70-interacting prot 97.9 2.2E-06 4.8E-11 61.2 -0.1 83 13-101 130-212 (377)
180 KOG1127 TPR repeat-containing 97.9 5.1E-05 1.1E-09 60.7 7.2 93 16-114 581-673 (1238)
181 PF13174 TPR_6: Tetratricopept 97.9 5.3E-05 1.1E-09 35.6 4.3 32 73-104 2-33 (33)
182 PF03704 BTAD: Bacterial trans 97.8 0.00078 1.7E-08 42.5 10.9 68 26-99 57-124 (146)
183 KOG0551 Hsp90 co-chaperone CNS 97.8 0.00016 3.6E-09 51.8 7.9 72 30-107 118-189 (390)
184 COG2956 Predicted N-acetylgluc 97.8 0.0003 6.5E-09 50.4 8.7 85 13-103 196-281 (389)
185 PF13176 TPR_7: Tetratricopept 97.8 2.7E-05 5.9E-10 37.9 2.5 27 74-100 2-28 (36)
186 KOG3081 Vesicle coat complex C 97.8 0.0011 2.5E-08 46.3 11.2 94 16-113 156-249 (299)
187 PF10300 DUF3808: Protein of u 97.7 0.00035 7.6E-09 52.6 8.8 94 13-109 249-342 (468)
188 PRK14720 transcript cleavage f 97.7 0.00061 1.3E-08 54.8 10.2 78 16-100 101-178 (906)
189 KOG0495 HAT repeat protein [RN 97.7 0.00043 9.4E-09 53.7 8.7 60 48-111 666-725 (913)
190 KOG3824 Huntingtin interacting 97.6 0.00048 1E-08 49.3 7.6 78 31-114 116-193 (472)
191 COG3071 HemY Uncharacterized e 97.6 0.00092 2E-08 48.8 8.8 80 14-100 311-390 (400)
192 PF14938 SNAP: Soluble NSF att 97.5 0.00054 1.2E-08 48.2 6.7 84 15-100 92-184 (282)
193 PF13181 TPR_8: Tetratricopept 97.5 0.00031 6.7E-09 33.2 3.8 30 31-62 1-30 (34)
194 KOG0495 HAT repeat protein [RN 97.5 0.002 4.2E-08 50.2 9.7 93 13-111 667-759 (913)
195 KOG2053 Mitochondrial inherita 97.4 0.0016 3.6E-08 51.7 9.4 95 14-115 26-120 (932)
196 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3E-09 34.9 2.4 32 20-53 2-33 (34)
197 COG4976 Predicted methyltransf 97.4 0.00032 6.9E-09 48.1 4.8 58 41-104 5-62 (287)
198 PF13176 TPR_7: Tetratricopept 97.4 0.00045 9.8E-09 33.4 3.9 28 33-62 1-28 (36)
199 PF12862 Apc5: Anaphase-promot 97.3 0.0022 4.8E-08 37.8 7.0 59 41-101 8-71 (94)
200 KOG2796 Uncharacterized conser 97.3 0.00071 1.5E-08 47.5 5.3 68 31-104 252-319 (366)
201 KOG1130 Predicted G-alpha GTPa 97.3 0.00017 3.6E-09 53.4 2.3 84 30-115 194-285 (639)
202 KOG3364 Membrane protein invol 97.3 0.011 2.4E-07 37.5 9.9 78 30-110 31-110 (149)
203 KOG4507 Uncharacterized conser 97.3 0.0021 4.7E-08 49.5 8.0 91 15-111 625-716 (886)
204 KOG2471 TPR repeat-containing 97.3 0.00034 7.4E-09 52.6 3.7 85 30-116 282-380 (696)
205 COG4700 Uncharacterized protei 97.2 0.009 2E-07 40.1 9.9 94 16-115 75-170 (251)
206 COG0457 NrfG FOG: TPR repeat [ 97.2 0.016 3.4E-07 36.8 10.7 77 30-112 166-243 (291)
207 PF03704 BTAD: Bacterial trans 97.2 0.011 2.4E-07 37.2 9.7 81 34-116 9-107 (146)
208 KOG1130 Predicted G-alpha GTPa 97.2 0.00057 1.2E-08 50.6 4.1 86 30-117 54-147 (639)
209 PF13174 TPR_6: Tetratricopept 97.2 0.0018 3.9E-08 30.1 4.6 32 32-69 1-32 (33)
210 PF04184 ST7: ST7 protein; In 97.1 0.005 1.1E-07 46.5 8.7 100 14-117 185-307 (539)
211 KOG3785 Uncharacterized conser 97.1 0.015 3.2E-07 42.7 10.7 75 36-117 157-231 (557)
212 KOG4340 Uncharacterized conser 97.1 0.00084 1.8E-08 48.0 4.3 65 29-99 142-206 (459)
213 KOG2376 Signal recognition par 97.0 0.003 6.4E-08 48.4 6.9 90 15-106 30-145 (652)
214 KOG4340 Uncharacterized conser 97.0 0.003 6.5E-08 45.2 6.4 55 48-106 25-79 (459)
215 KOG4151 Myosin assembly protei 97.0 0.0013 2.7E-08 51.7 4.9 85 30-116 52-138 (748)
216 KOG4814 Uncharacterized conser 97.0 0.0071 1.5E-07 47.1 8.7 79 31-111 354-434 (872)
217 KOG2610 Uncharacterized conser 97.0 0.0085 1.8E-07 43.6 8.7 99 15-115 121-219 (491)
218 PF13374 TPR_10: Tetratricopep 97.0 0.003 6.5E-08 30.9 4.5 30 71-100 2-31 (42)
219 COG0457 NrfG FOG: TPR repeat [ 97.0 0.016 3.4E-07 36.9 9.1 71 26-102 90-161 (291)
220 PF14561 TPR_20: Tetratricopep 97.0 0.021 4.6E-07 33.5 8.7 75 16-96 7-83 (90)
221 PF14938 SNAP: Soluble NSF att 96.9 0.012 2.5E-07 41.5 8.9 70 29-100 72-144 (282)
222 smart00028 TPR Tetratricopepti 96.9 0.0027 5.9E-08 28.2 3.8 29 32-62 2-30 (34)
223 PF09613 HrpB1_HrpK: Bacterial 96.9 0.0096 2.1E-07 38.7 7.3 83 13-102 26-108 (160)
224 PF10579 Rapsyn_N: Rapsyn N-te 96.9 0.024 5.2E-07 32.5 8.1 68 30-100 5-72 (80)
225 PF15015 NYD-SP12_N: Spermatog 96.9 0.0072 1.6E-07 45.0 7.3 80 34-115 179-272 (569)
226 PF14561 TPR_20: Tetratricopep 96.9 0.007 1.5E-07 35.6 6.1 49 52-104 7-55 (90)
227 KOG3081 Vesicle coat complex C 96.8 0.012 2.6E-07 41.3 7.5 82 19-106 195-277 (299)
228 COG2912 Uncharacterized conser 96.7 0.021 4.6E-07 40.0 8.3 73 35-113 185-257 (269)
229 KOG3785 Uncharacterized conser 96.7 0.0043 9.4E-08 45.4 4.9 55 37-97 63-117 (557)
230 PF09613 HrpB1_HrpK: Bacterial 96.7 0.056 1.2E-06 35.1 9.6 83 27-115 6-88 (160)
231 KOG2376 Signal recognition par 96.6 0.034 7.3E-07 42.9 9.6 80 26-116 105-186 (652)
232 PF10516 SHNi-TPR: SHNi-TPR; 96.5 0.0069 1.5E-07 29.8 3.8 30 72-101 2-31 (38)
233 KOG2396 HAT (Half-A-TPR) repea 96.4 0.053 1.1E-06 41.2 9.4 86 18-109 92-178 (568)
234 PF05843 Suf: Suppressor of fo 96.3 0.026 5.6E-07 39.8 7.0 86 14-104 18-103 (280)
235 KOG2796 Uncharacterized conser 96.2 0.03 6.4E-07 39.6 6.8 96 19-116 199-297 (366)
236 PF13374 TPR_10: Tetratricopep 96.2 0.017 3.7E-07 28.0 4.2 30 31-62 2-31 (42)
237 PF04781 DUF627: Protein of un 96.2 0.049 1.1E-06 33.3 6.9 71 37-113 2-86 (111)
238 COG5191 Uncharacterized conser 96.2 0.0094 2E-07 42.9 4.2 77 28-110 104-181 (435)
239 PF10602 RPN7: 26S proteasome 96.2 0.094 2E-06 34.6 8.7 71 27-100 32-102 (177)
240 PF04781 DUF627: Protein of un 96.1 0.11 2.4E-06 31.7 8.0 83 15-101 14-108 (111)
241 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.085 1.8E-06 27.9 6.7 43 32-80 2-44 (53)
242 PF08424 NRDE-2: NRDE-2, neces 95.9 0.41 8.8E-06 34.5 11.7 91 17-111 5-105 (321)
243 TIGR02561 HrpB1_HrpK type III 95.9 0.044 9.5E-07 35.2 5.9 69 13-87 26-94 (153)
244 PF07720 TPR_3: Tetratricopept 95.7 0.071 1.5E-06 25.8 5.0 32 73-104 3-36 (36)
245 COG4105 ComL DNA uptake lipopr 95.6 0.31 6.7E-06 34.0 9.7 88 15-105 52-150 (254)
246 COG3118 Thioredoxin domain-con 95.6 0.42 9.1E-06 34.1 10.5 63 28-96 131-193 (304)
247 PLN03081 pentatricopeptide (PP 95.6 0.038 8.2E-07 43.5 5.9 77 32-116 463-539 (697)
248 TIGR02561 HrpB1_HrpK type III 95.6 0.27 5.8E-06 31.7 8.6 82 27-114 6-87 (153)
249 PLN03077 Protein ECB2; Provisi 95.5 0.12 2.5E-06 41.8 8.4 77 31-115 625-701 (857)
250 PF02259 FAT: FAT domain; Int 95.4 0.095 2.1E-06 37.4 6.9 85 30-116 183-303 (352)
251 COG2976 Uncharacterized protei 95.4 0.19 4.2E-06 33.8 7.7 36 70-105 158-193 (207)
252 PF12968 DUF3856: Domain of Un 95.3 0.39 8.5E-06 30.0 9.2 61 37-99 15-83 (144)
253 PF09986 DUF2225: Uncharacteri 95.3 0.56 1.2E-05 31.9 10.0 82 29-112 116-207 (214)
254 PF12968 DUF3856: Domain of Un 95.2 0.41 8.8E-06 29.9 9.4 69 30-100 54-129 (144)
255 KOG3824 Huntingtin interacting 95.2 0.028 6.2E-07 40.5 3.7 62 13-80 132-193 (472)
256 PRK10941 hypothetical protein; 95.2 0.11 2.4E-06 36.6 6.6 62 13-80 197-258 (269)
257 COG3071 HemY Uncharacterized e 95.2 0.48 1E-05 35.1 9.9 80 31-116 118-198 (400)
258 PF11207 DUF2989: Protein of u 95.2 0.13 2.7E-06 34.8 6.5 59 30-91 140-198 (203)
259 KOG1310 WD40 repeat protein [G 95.1 0.19 4.2E-06 38.8 8.0 85 16-104 393-478 (758)
260 PF04910 Tcf25: Transcriptiona 95.1 0.27 5.8E-06 36.1 8.5 86 20-107 29-140 (360)
261 COG3629 DnrI DNA-binding trans 95.1 0.6 1.3E-05 33.1 9.9 67 27-99 149-215 (280)
262 PLN03218 maturation of RBCL 1; 95.0 0.54 1.2E-05 39.3 10.9 64 31-99 579-642 (1060)
263 KOG0530 Protein farnesyltransf 95.0 0.65 1.4E-05 32.9 9.6 92 12-108 58-150 (318)
264 PF07079 DUF1347: Protein of u 94.9 0.22 4.9E-06 37.6 7.7 60 31-97 462-521 (549)
265 PLN03218 maturation of RBCL 1; 94.8 0.62 1.4E-05 38.9 10.7 78 32-115 650-729 (1060)
266 PF10373 EST1_DNA_bind: Est1 D 94.7 0.16 3.4E-06 35.2 6.4 54 52-109 1-54 (278)
267 COG3118 Thioredoxin domain-con 94.6 1.1 2.4E-05 32.0 10.7 86 13-100 150-265 (304)
268 KOG1915 Cell cycle control pro 94.5 1.1 2.3E-05 34.5 10.5 78 27-110 69-146 (677)
269 PF07721 TPR_4: Tetratricopept 94.5 0.072 1.6E-06 23.6 2.9 24 72-95 2-25 (26)
270 PRK04841 transcriptional regul 94.5 0.72 1.6E-05 37.3 10.4 68 31-100 531-602 (903)
271 PLN03081 pentatricopeptide (PP 94.4 0.19 4.1E-06 39.7 6.8 65 30-100 493-557 (697)
272 KOG0529 Protein geranylgeranyl 94.2 1.1 2.5E-05 33.4 9.8 95 13-111 45-151 (421)
273 PRK04841 transcriptional regul 94.0 0.76 1.6E-05 37.2 9.6 68 31-100 491-560 (903)
274 PF10255 Paf67: RNA polymerase 94.0 0.2 4.4E-06 37.3 5.9 61 36-99 127-192 (404)
275 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.12 2.7E-06 25.3 3.3 29 32-62 2-30 (38)
276 KOG0530 Protein farnesyltransf 94.0 0.53 1.2E-05 33.3 7.5 91 15-111 96-187 (318)
277 PF14863 Alkyl_sulf_dimr: Alky 94.0 0.41 8.9E-06 30.5 6.5 52 31-88 70-121 (141)
278 KOG0546 HSP90 co-chaperone CPR 94.0 0.017 3.8E-07 41.9 0.2 83 31-115 222-319 (372)
279 PF10300 DUF3808: Protein of u 93.9 1.1 2.5E-05 34.0 9.8 81 14-100 284-376 (468)
280 PLN03077 Protein ECB2; Provisi 93.7 0.46 1E-05 38.4 7.8 78 14-99 642-719 (857)
281 KOG0529 Protein geranylgeranyl 93.7 1.2 2.5E-05 33.3 9.1 100 12-115 90-193 (421)
282 PF04184 ST7: ST7 protein; In 93.6 1 2.3E-05 34.5 8.9 74 33-112 261-337 (539)
283 KOG1586 Protein required for f 93.5 1.8 4E-05 30.3 9.9 90 13-104 89-187 (288)
284 COG4700 Uncharacterized protei 93.4 0.69 1.5E-05 31.3 7.0 73 28-104 121-193 (251)
285 cd02682 MIT_AAA_Arch MIT: doma 93.2 0.65 1.4E-05 26.3 5.7 32 29-62 4-35 (75)
286 cd02682 MIT_AAA_Arch MIT: doma 93.1 0.92 2E-05 25.7 6.3 21 48-72 28-48 (75)
287 PF05843 Suf: Suppressor of fo 92.9 1.7 3.7E-05 30.6 8.9 73 33-111 3-76 (280)
288 PF13281 DUF4071: Domain of un 92.9 1.6 3.5E-05 32.3 8.9 72 29-105 177-260 (374)
289 COG3914 Spy Predicted O-linked 92.8 2.5 5.4E-05 33.1 10.0 92 13-109 83-180 (620)
290 KOG1585 Protein required for f 92.7 1.7 3.7E-05 30.6 8.3 31 30-61 29-59 (308)
291 KOG1915 Cell cycle control pro 92.7 3.1 6.7E-05 32.1 10.1 86 20-112 460-547 (677)
292 KOG1586 Protein required for f 91.9 1.2 2.6E-05 31.1 6.8 63 31-100 74-143 (288)
293 KOG1464 COP9 signalosome, subu 91.9 0.7 1.5E-05 33.1 5.8 52 48-99 42-93 (440)
294 COG4455 ImpE Protein of avirul 91.8 1.4 3E-05 30.5 6.9 61 39-105 9-69 (273)
295 KOG0546 HSP90 co-chaperone CPR 91.6 0.12 2.7E-06 37.6 1.9 70 36-111 280-349 (372)
296 KOG3783 Uncharacterized conser 91.6 0.67 1.4E-05 35.7 5.7 92 13-109 249-340 (546)
297 PF04212 MIT: MIT (microtubule 91.3 0.8 1.7E-05 25.1 4.7 31 30-62 4-34 (69)
298 PF11817 Foie-gras_1: Foie gra 91.1 2 4.3E-05 29.7 7.4 65 31-98 178-245 (247)
299 COG2912 Uncharacterized conser 90.9 0.54 1.2E-05 33.1 4.4 62 13-80 197-258 (269)
300 COG2976 Uncharacterized protei 90.5 2.4 5.2E-05 28.7 7.0 63 32-97 90-152 (207)
301 TIGR03504 FimV_Cterm FimV C-te 90.2 1 2.2E-05 22.7 4.0 25 75-99 3-27 (44)
302 KOG1550 Extracellular protein 90.0 6.2 0.00013 30.7 9.9 76 30-114 324-405 (552)
303 KOG1941 Acetylcholine receptor 90.0 1 2.2E-05 33.5 5.2 66 33-100 164-235 (518)
304 cd02683 MIT_1 MIT: domain cont 89.9 1.1 2.3E-05 25.5 4.4 31 30-62 5-35 (77)
305 KOG2053 Mitochondrial inherita 89.9 3.5 7.5E-05 33.8 8.4 90 14-110 60-149 (932)
306 PF07720 TPR_3: Tetratricopept 89.8 1.4 2.9E-05 21.2 4.6 29 32-62 2-32 (36)
307 PF14863 Alkyl_sulf_dimr: Alky 89.7 1.8 3.9E-05 27.6 5.7 46 71-116 70-115 (141)
308 COG4976 Predicted methyltransf 89.6 0.98 2.1E-05 31.5 4.7 48 15-64 13-60 (287)
309 KOG1070 rRNA processing protei 89.5 6 0.00013 34.3 9.8 91 15-109 1548-1638(1710)
310 smart00386 HAT HAT (Half-A-TPR 89.5 1.1 2.4E-05 19.8 4.0 26 86-111 2-27 (33)
311 PF15015 NYD-SP12_N: Spermatog 89.4 0.96 2.1E-05 34.2 4.8 57 35-97 232-288 (569)
312 cd02681 MIT_calpain7_1 MIT: do 89.3 1.4 3E-05 25.0 4.5 31 30-62 5-35 (76)
313 COG3947 Response regulator con 88.7 2.7 5.9E-05 30.4 6.5 40 72-111 280-319 (361)
314 PF00244 14-3-3: 14-3-3 protei 88.4 6.5 0.00014 27.2 8.3 51 49-99 142-197 (236)
315 PRK13184 pknD serine/threonine 88.3 1.9 4.1E-05 35.7 6.2 56 48-108 534-589 (932)
316 cd02680 MIT_calpain7_2 MIT: do 88.3 1.7 3.6E-05 24.7 4.4 32 30-63 5-36 (75)
317 KOG2047 mRNA splicing factor [ 87.8 5.7 0.00012 31.8 8.2 92 16-109 496-589 (835)
318 cd02678 MIT_VPS4 MIT: domain c 87.7 1.9 4.1E-05 24.2 4.4 31 30-62 5-35 (75)
319 KOG1550 Extracellular protein 87.5 3.3 7.1E-05 32.2 6.9 77 32-116 289-371 (552)
320 COG3898 Uncharacterized membra 86.6 12 0.00026 28.4 8.9 89 13-103 245-361 (531)
321 PF04212 MIT: MIT (microtubule 86.5 2.6 5.6E-05 23.0 4.5 27 74-100 8-34 (69)
322 cd02684 MIT_2 MIT: domain cont 86.3 2.5 5.5E-05 23.8 4.4 30 31-62 6-35 (75)
323 KOG2396 HAT (Half-A-TPR) repea 86.3 5 0.00011 31.0 7.0 59 51-113 89-147 (568)
324 PF13281 DUF4071: Domain of un 86.1 6.1 0.00013 29.3 7.3 80 36-118 146-230 (374)
325 KOG1585 Protein required for f 85.8 10 0.00022 26.9 8.2 53 48-100 86-139 (308)
326 KOG3807 Predicted membrane pro 85.8 12 0.00027 27.8 9.6 85 14-102 201-306 (556)
327 COG4941 Predicted RNA polymera 85.4 9.5 0.00021 28.2 7.8 93 15-112 314-406 (415)
328 KOG4507 Uncharacterized conser 85.4 2.1 4.6E-05 33.8 4.8 75 36-116 611-687 (886)
329 PF02259 FAT: FAT domain; Int 85.2 11 0.00024 26.7 8.4 71 27-99 142-212 (352)
330 COG3947 Response regulator con 85.2 7.3 0.00016 28.2 7.1 59 32-96 280-338 (361)
331 KOG4151 Myosin assembly protei 85.1 3.5 7.7E-05 33.2 6.0 78 28-109 88-165 (748)
332 KOG2758 Translation initiation 84.9 13 0.00029 27.3 8.6 73 25-99 123-195 (432)
333 cd02677 MIT_SNX15 MIT: domain 84.2 3.7 8.1E-05 23.2 4.4 30 31-62 6-35 (75)
334 KOG1070 rRNA processing protei 83.9 20 0.00043 31.5 9.9 91 15-111 1582-1676(1710)
335 KOG4814 Uncharacterized conser 83.6 14 0.00031 29.7 8.5 68 27-100 390-457 (872)
336 PF12854 PPR_1: PPR repeat 83.1 3.5 7.5E-05 19.2 4.3 28 69-96 5-32 (34)
337 smart00745 MIT Microtubule Int 82.5 6.4 0.00014 21.9 6.6 30 31-62 8-37 (77)
338 PF10373 EST1_DNA_bind: Est1 D 82.2 8.1 0.00018 26.6 6.4 61 17-83 2-62 (278)
339 KOG2047 mRNA splicing factor [ 82.1 8.4 0.00018 30.9 6.8 74 24-101 342-417 (835)
340 cd02681 MIT_calpain7_1 MIT: do 81.9 4.9 0.00011 22.8 4.3 28 73-100 8-35 (76)
341 PF12862 Apc5: Anaphase-promot 81.7 8 0.00017 22.4 6.8 32 30-63 40-71 (94)
342 PF08631 SPO22: Meiosis protei 81.7 9.2 0.0002 26.9 6.6 57 42-100 4-65 (278)
343 KOG2471 TPR repeat-containing 81.5 3.5 7.6E-05 31.9 4.6 49 29-83 333-381 (696)
344 KOG0686 COP9 signalosome, subu 81.3 12 0.00026 28.3 7.1 71 27-100 146-216 (466)
345 cd02683 MIT_1 MIT: domain cont 81.2 5.2 0.00011 22.7 4.3 26 74-99 9-34 (77)
346 cd02656 MIT MIT: domain contai 80.4 7.8 0.00017 21.5 6.5 30 31-62 6-35 (75)
347 COG3914 Spy Predicted O-linked 79.7 16 0.00035 28.8 7.6 68 38-111 74-142 (620)
348 PF07219 HemY_N: HemY protein 79.6 11 0.00023 22.6 7.9 53 27-85 55-107 (108)
349 PF11846 DUF3366: Domain of un 79.3 15 0.00033 24.1 7.2 50 50-104 128-177 (193)
350 PF10952 DUF2753: Protein of u 79.2 13 0.00029 23.4 6.9 64 33-98 3-77 (140)
351 cd02679 MIT_spastin MIT: domai 78.6 6.2 0.00014 22.6 4.0 29 32-62 9-37 (79)
352 COG3629 DnrI DNA-binding trans 78.4 16 0.00035 26.1 6.9 49 69-117 151-199 (280)
353 KOG3364 Membrane protein invol 77.4 14 0.00031 23.7 5.7 58 17-80 55-114 (149)
354 KOG4563 Cell cycle-regulated h 77.2 10 0.00022 28.2 5.7 64 27-92 37-104 (400)
355 smart00745 MIT Microtubule Int 77.2 8.1 0.00018 21.4 4.3 14 49-62 5-18 (77)
356 cd02679 MIT_spastin MIT: domai 76.8 7.6 0.00016 22.2 4.0 32 48-79 4-35 (79)
357 KOG1941 Acetylcholine receptor 75.8 23 0.0005 26.7 7.2 69 30-100 205-275 (518)
358 COG0790 FOG: TPR repeat, SEL1 75.4 25 0.00053 24.5 9.7 80 28-115 106-197 (292)
359 COG0790 FOG: TPR repeat, SEL1 75.3 20 0.00042 25.0 6.7 79 32-116 74-159 (292)
360 cd02678 MIT_VPS4 MIT: domain c 74.9 10 0.00023 21.1 4.3 25 75-99 10-34 (75)
361 PF08424 NRDE-2: NRDE-2, neces 74.6 29 0.00063 25.0 9.6 81 14-100 48-131 (321)
362 COG2015 Alkyl sulfatase and re 74.5 12 0.00027 29.0 5.6 55 31-91 452-506 (655)
363 KOG0890 Protein kinase of the 73.9 12 0.00027 34.1 6.1 70 36-111 1454-1523(2382)
364 KOG2610 Uncharacterized conser 73.3 27 0.00058 26.1 6.9 42 48-93 190-231 (491)
365 COG5191 Uncharacterized conser 72.8 4.3 9.4E-05 29.7 2.9 44 67-110 103-146 (435)
366 KOG0985 Vesicle coat protein c 71.8 58 0.0013 28.1 9.1 58 31-99 1104-1161(1666)
367 cd02656 MIT MIT: domain contai 71.8 14 0.0003 20.4 4.3 17 83-99 18-34 (75)
368 cd08977 SusD starch binding ou 71.5 23 0.0005 25.6 6.5 32 69-100 174-210 (359)
369 PF10579 Rapsyn_N: Rapsyn N-te 70.8 18 0.00038 20.8 4.7 43 72-114 7-49 (80)
370 PF02064 MAS20: MAS20 protein 70.4 16 0.00035 22.7 4.7 26 35-62 67-92 (121)
371 PF13041 PPR_2: PPR repeat fam 70.3 12 0.00026 18.7 6.0 28 72-99 4-31 (50)
372 PF04910 Tcf25: Transcriptiona 70.1 24 0.00052 26.0 6.3 33 67-99 36-68 (360)
373 PF06957 COPI_C: Coatomer (COP 69.0 41 0.0009 25.5 7.3 30 31-62 204-233 (422)
374 KOG2422 Uncharacterized conser 68.9 43 0.00093 26.6 7.5 80 27-108 280-380 (665)
375 cd02677 MIT_SNX15 MIT: domain 68.9 17 0.00037 20.4 4.3 16 85-100 20-35 (75)
376 PHA02537 M terminase endonucle 68.3 18 0.0004 25.0 5.1 21 84-104 191-211 (230)
377 PF01535 PPR: PPR repeat; Int 68.0 9.2 0.0002 16.5 3.1 25 74-98 3-27 (31)
378 COG4649 Uncharacterized protei 67.9 35 0.00075 23.1 10.1 83 31-116 94-211 (221)
379 smart00101 14_3_3 14-3-3 homol 67.9 39 0.00084 23.6 8.5 51 49-99 144-199 (244)
380 PF11817 Foie-gras_1: Foie gra 67.6 26 0.00057 24.2 5.8 50 51-100 156-207 (247)
381 cd02684 MIT_2 MIT: domain cont 66.2 21 0.00046 20.0 4.4 22 78-99 13-34 (75)
382 PF02064 MAS20: MAS20 protein 65.7 23 0.00049 22.0 4.7 35 74-108 66-100 (121)
383 PF09670 Cas_Cas02710: CRISPR- 64.4 57 0.0012 24.2 8.7 65 31-100 131-198 (379)
384 PF07079 DUF1347: Protein of u 63.7 68 0.0015 24.9 10.4 99 14-117 397-507 (549)
385 TIGR00756 PPR pentatricopeptid 63.7 12 0.00026 16.3 3.8 26 74-99 3-28 (35)
386 COG2909 MalT ATP-dependent tra 63.5 88 0.0019 26.2 9.3 64 35-100 462-526 (894)
387 KOG1914 mRNA cleavage and poly 63.4 59 0.0013 25.8 7.3 72 21-99 10-81 (656)
388 PF02184 HAT: HAT (Half-A-TPR) 63.3 15 0.00032 17.2 3.3 25 86-111 2-26 (32)
389 PF10602 RPN7: 26S proteasome 62.8 41 0.00088 22.1 7.6 34 68-101 33-66 (177)
390 PF09797 NatB_MDM20: N-acetylt 62.7 34 0.00073 25.0 5.9 45 48-96 198-242 (365)
391 PF09986 DUF2225: Uncharacteri 62.6 30 0.00064 23.6 5.2 32 29-62 163-194 (214)
392 COG3898 Uncharacterized membra 62.0 70 0.0015 24.5 7.6 67 29-102 228-294 (531)
393 PF08969 USP8_dimer: USP8 dime 61.7 28 0.00061 21.0 4.6 32 30-63 37-68 (115)
394 PF10345 Cohesin_load: Cohesin 61.0 81 0.0018 24.9 8.6 69 30-102 58-130 (608)
395 KOG2300 Uncharacterized conser 59.6 85 0.0018 24.7 7.6 83 31-115 46-137 (629)
396 KOG2997 F-box protein FBX9 [Ge 58.7 27 0.00059 25.6 4.6 41 29-75 17-57 (366)
397 PRK15180 Vi polysaccharide bio 58.5 89 0.0019 24.7 7.4 44 48-95 304-347 (831)
398 PF12583 TPPII_N: Tripeptidyl 58.3 35 0.00077 21.6 4.5 28 86-113 91-118 (139)
399 PF09205 DUF1955: Domain of un 57.3 50 0.0011 21.3 7.5 34 67-100 116-149 (161)
400 KOG2997 F-box protein FBX9 [Ge 56.6 39 0.00085 24.8 5.1 39 71-109 19-57 (366)
401 KOG0687 26S proteasome regulat 56.5 80 0.0017 23.5 7.2 71 28-100 101-173 (393)
402 KOG2300 Uncharacterized conser 56.1 51 0.0011 25.9 5.8 70 30-101 444-515 (629)
403 KOG2581 26S proteasome regulat 55.9 91 0.002 23.9 7.4 57 48-104 224-280 (493)
404 COG4259 Uncharacterized protei 53.5 29 0.00064 21.1 3.5 39 67-105 68-106 (121)
405 KOG4056 Translocase of outer m 52.3 41 0.0009 21.5 4.2 26 35-62 85-110 (143)
406 KOG1839 Uncharacterized protei 51.9 76 0.0017 27.6 6.7 73 27-101 1011-1087(1236)
407 KOG0985 Vesicle coat protein c 51.9 33 0.00071 29.5 4.5 57 30-100 1193-1249(1666)
408 PF04053 Coatomer_WDAD: Coatom 51.7 72 0.0016 24.4 6.1 32 68-99 344-375 (443)
409 PF11349 DUF3151: Protein of u 51.3 59 0.0013 20.4 5.7 82 22-105 27-126 (129)
410 PF12925 APP_E2: E2 domain of 51.0 75 0.0016 21.5 7.6 16 87-102 149-164 (193)
411 PF02255 PTS_IIA: PTS system, 49.8 53 0.0011 19.4 4.4 32 28-61 11-42 (96)
412 KOG2114 Vacuolar assembly/sort 49.0 58 0.0013 27.1 5.4 27 34-62 371-397 (933)
413 PRK15180 Vi polysaccharide bio 48.8 26 0.00057 27.4 3.4 22 82-103 402-423 (831)
414 cd00215 PTS_IIA_lac PTS_IIA, P 48.8 53 0.0011 19.5 4.1 32 28-61 12-43 (97)
415 TIGR00823 EIIA-LAC phosphotran 48.8 52 0.0011 19.6 4.1 33 27-61 13-45 (99)
416 KOG1839 Uncharacterized protei 48.8 50 0.0011 28.6 5.2 77 22-100 964-1044(1236)
417 KOG2709 Uncharacterized conser 48.4 27 0.00059 26.7 3.4 25 75-99 26-50 (560)
418 PF11207 DUF2989: Protein of u 48.2 86 0.0019 21.4 7.0 49 68-117 138-190 (203)
419 PF07980 SusD: SusD family; I 47.6 53 0.0011 22.2 4.7 30 70-99 132-161 (266)
420 PF08311 Mad3_BUB1_I: Mad3/BUB 47.1 67 0.0015 19.8 5.9 32 67-98 95-126 (126)
421 KOG2114 Vacuolar assembly/sort 46.7 66 0.0014 26.8 5.4 60 38-104 341-402 (933)
422 PF11846 DUF3366: Domain of un 46.5 68 0.0015 21.0 4.9 48 14-68 128-175 (193)
423 COG5536 BET4 Protein prenyltra 45.9 40 0.00087 24.4 3.8 99 9-111 86-190 (328)
424 KOG3617 WD40 and TPR repeat-co 45.7 80 0.0017 26.7 5.7 71 26-97 1074-1171(1416)
425 PRK13184 pknD serine/threonine 45.5 1.2E+02 0.0026 25.7 6.9 83 15-104 537-624 (932)
426 PF13812 PPR_3: Pentatricopept 43.9 31 0.00068 15.0 4.3 27 73-99 3-29 (34)
427 PF12753 Nro1: Nuclear pore co 43.6 42 0.0009 25.3 3.7 33 49-87 334-366 (404)
428 COG5091 SGT1 Suppressor of G2 42.6 66 0.0014 23.3 4.4 53 49-101 55-109 (368)
429 PF01239 PPTA: Protein prenylt 42.5 35 0.00075 15.2 4.3 17 92-108 4-20 (31)
430 TIGR00985 3a0801s04tom mitocho 41.7 82 0.0018 20.3 4.4 33 76-108 95-128 (148)
431 PRK09591 celC cellobiose phosp 41.7 78 0.0017 19.0 6.2 33 27-61 16-48 (104)
432 PF14689 SPOB_a: Sensor_kinase 41.7 57 0.0012 17.4 5.5 28 72-99 24-51 (62)
433 PF07219 HemY_N: HemY protein 41.0 78 0.0017 18.8 5.1 44 71-114 59-102 (108)
434 PRK15490 Vi polysaccharide bio 39.7 2E+02 0.0042 23.0 8.9 60 28-95 39-98 (578)
435 PF10255 Paf67: RNA polymerase 39.6 76 0.0016 24.0 4.6 34 27-62 160-193 (404)
436 cd00280 TRFH Telomeric Repeat 39.1 1.2E+02 0.0027 20.5 5.4 50 36-92 116-165 (200)
437 smart00671 SEL1 Sel1-like repe 39.1 40 0.00087 14.9 3.7 28 73-100 3-34 (36)
438 COG4455 ImpE Protein of avirul 38.8 1.4E+02 0.003 21.1 5.8 86 15-103 19-118 (273)
439 COG5159 RPN6 26S proteasome re 38.6 1.6E+02 0.0034 21.8 5.8 53 35-89 7-63 (421)
440 PF03745 DUF309: Domain of unk 38.2 67 0.0015 17.2 6.1 57 35-93 3-61 (62)
441 PF00244 14-3-3: 14-3-3 protei 37.8 61 0.0013 22.4 3.7 29 75-103 5-33 (236)
442 COG4649 Uncharacterized protei 37.6 1.3E+02 0.0028 20.4 5.9 50 28-84 164-213 (221)
443 PF13838 Clathrin_H_link: Clat 37.6 74 0.0016 17.5 3.4 25 32-58 7-31 (66)
444 KOG1914 mRNA cleavage and poly 37.5 2.2E+02 0.0047 22.9 8.9 56 39-100 409-464 (656)
445 COG5600 Transcription-associat 37.4 1.6E+02 0.0034 22.3 5.8 64 38-103 184-252 (413)
446 PF14858 DUF4486: Domain of un 37.2 2.1E+02 0.0045 22.7 7.4 62 36-99 156-225 (542)
447 KOG4056 Translocase of outer m 37.0 1.1E+02 0.0025 19.5 4.4 34 75-108 85-118 (143)
448 PF05131 Pep3_Vps18: Pep3/Vps1 36.6 28 0.00061 22.3 1.8 18 79-96 111-128 (147)
449 KOG0292 Vesicle coat complex C 35.7 2.8E+02 0.0062 23.7 9.7 79 28-108 988-1121(1202)
450 KOG1811 Predicted Zn2+-binding 35.7 2.5E+02 0.0054 23.1 7.0 47 55-101 571-617 (1141)
451 KOG2581 26S proteasome regulat 35.5 1.3E+02 0.0029 23.1 5.2 34 27-62 243-276 (493)
452 TIGR02710 CRISPR-associated pr 34.8 2E+02 0.0043 21.7 8.4 68 27-96 124-196 (380)
453 PF10345 Cohesin_load: Cohesin 34.7 2.3E+02 0.005 22.4 10.9 64 30-95 360-428 (608)
454 PF15297 CKAP2_C: Cytoskeleton 34.6 1.9E+02 0.0042 21.5 8.7 67 35-103 106-172 (353)
455 TIGR02498 type_III_ssaH type I 34.4 94 0.002 17.8 7.7 61 30-96 5-65 (79)
456 COG1747 Uncharacterized N-term 34.3 2.4E+02 0.0053 22.6 8.5 64 28-99 96-159 (711)
457 KOG3807 Predicted membrane pro 33.6 1.8E+02 0.0039 21.9 5.6 56 36-99 189-244 (556)
458 PF08631 SPO22: Meiosis protei 33.2 1.7E+02 0.0037 20.5 9.3 78 30-108 34-124 (278)
459 cd00280 TRFH Telomeric Repeat 32.7 1.1E+02 0.0024 20.8 4.0 32 79-111 119-150 (200)
460 PF05053 Menin: Menin; InterP 32.0 1.2E+02 0.0026 24.2 4.7 50 50-99 296-346 (618)
461 KOG1464 COP9 signalosome, subu 31.9 1.4E+02 0.003 21.9 4.7 49 12-62 42-94 (440)
462 KOG0739 AAA+-type ATPase [Post 31.2 2.2E+02 0.0049 21.2 7.2 15 48-62 25-39 (439)
463 PF04010 DUF357: Protein of un 30.9 1E+02 0.0023 17.3 4.2 27 30-58 34-60 (75)
464 PRK10454 PTS system N,N'-diace 30.8 1.3E+02 0.0029 18.4 6.1 35 26-62 26-60 (115)
465 KOG0890 Protein kinase of the 30.6 4.3E+02 0.0094 25.2 8.1 67 27-101 1666-1732(2382)
466 KOG3677 RNA polymerase I-assoc 30.5 45 0.00097 25.6 2.2 25 75-99 276-300 (525)
467 KOG3617 WD40 and TPR repeat-co 29.9 3.6E+02 0.0079 23.2 8.0 58 38-97 919-993 (1416)
468 PF08238 Sel1: Sel1 repeat; I 29.0 67 0.0015 14.5 4.2 13 87-99 24-36 (39)
469 PF13226 DUF4034: Domain of un 28.7 2.2E+02 0.0048 20.4 7.1 46 67-112 73-140 (277)
470 PF08626 TRAPPC9-Trs120: Trans 28.6 1.4E+02 0.003 25.9 5.0 56 28-85 239-296 (1185)
471 KOG1258 mRNA processing protei 28.5 3.1E+02 0.0067 22.0 7.3 50 54-107 66-115 (577)
472 PF10366 Vps39_1: Vacuolar sor 28.5 84 0.0018 18.9 2.8 29 31-61 39-67 (108)
473 KOG3677 RNA polymerase I-assoc 26.7 1.7E+02 0.0037 22.6 4.6 63 35-103 276-339 (525)
474 PF10938 YfdX: YfdX protein; 26.5 1.8E+02 0.004 18.7 7.5 68 30-99 74-145 (155)
475 PHA02537 M terminase endonucle 26.5 1.5E+02 0.0032 20.6 4.1 33 28-62 166-207 (230)
476 PF04053 Coatomer_WDAD: Coatom 26.2 3E+02 0.0066 21.1 7.4 29 30-60 346-374 (443)
477 PRK15490 Vi polysaccharide bio 26.0 3.5E+02 0.0075 21.7 7.9 54 48-105 23-76 (578)
478 KOG2041 WD40 repeat protein [G 25.5 4.1E+02 0.0089 22.4 7.5 27 30-58 795-821 (1189)
479 TIGR03362 VI_chp_7 type VI sec 25.3 2.7E+02 0.0058 20.1 7.8 66 31-99 213-278 (301)
480 smart00748 HEPN Higher Eukaryt 24.8 1.6E+02 0.0034 17.3 3.7 30 31-62 4-33 (113)
481 KOG0889 Histone acetyltransfer 24.7 70 0.0015 30.9 2.7 49 68-116 2809-2857(3550)
482 PF04505 Dispanin: Interferon- 24.7 1.1E+02 0.0024 17.4 2.8 24 77-100 43-66 (82)
483 COG1447 CelC Phosphotransferas 24.4 1.7E+02 0.0038 17.7 5.0 33 26-60 14-46 (105)
484 PF08626 TRAPPC9-Trs120: Trans 24.2 1.2E+02 0.0026 26.3 3.8 28 73-100 244-271 (1185)
485 KOG4849 mRNA cleavage factor I 23.8 2.4E+02 0.0052 21.2 4.8 43 18-62 360-402 (498)
486 PRK12791 flbT flagellar biosyn 23.5 2E+02 0.0044 18.1 4.8 25 77-101 96-120 (131)
487 COG4623 Predicted soluble lyti 23.3 1.9E+02 0.0042 22.1 4.3 53 52-105 336-388 (473)
488 PF12583 TPPII_N: Tripeptidyl 23.1 2.1E+02 0.0046 18.2 6.1 47 29-81 74-120 (139)
489 KOG2709 Uncharacterized conser 22.7 3.7E+02 0.008 20.9 7.0 32 30-63 21-52 (560)
490 KOG2041 WD40 repeat protein [G 22.6 3.1E+02 0.0066 23.0 5.5 42 68-110 793-834 (1189)
491 KOG0276 Vesicle coat complex C 22.3 4.4E+02 0.0096 21.6 6.5 68 27-96 662-746 (794)
492 KOG1920 IkappaB kinase complex 22.1 1.5E+02 0.0032 25.9 3.8 22 78-99 959-980 (1265)
493 smart00777 Mad3_BUB1_I Mad3/BU 21.9 1.7E+02 0.0036 18.2 3.3 30 67-96 95-124 (125)
494 PF06051 DUF928: Domain of Unk 21.8 2.6E+02 0.0055 18.6 4.4 32 75-106 135-166 (189)
495 PF15469 Sec5: Exocyst complex 21.5 2.4E+02 0.0052 18.3 7.5 21 40-62 95-115 (182)
496 cd08977 SusD starch binding ou 21.5 2.1E+02 0.0046 20.6 4.3 30 71-100 286-315 (359)
497 smart00770 Zn_dep_PLPC Zinc de 21.4 2.8E+02 0.0061 19.4 4.6 33 28-62 111-143 (241)
498 KOG2034 Vacuolar sorting prote 21.2 2.2E+02 0.0047 24.1 4.5 25 73-97 391-415 (911)
499 cd09245 BRO1_UmRIM23-like Prot 20.7 3.9E+02 0.0084 20.3 6.1 28 72-99 297-324 (413)
500 TIGR02863 spore_sspJ small, ac 20.5 1.4E+02 0.0029 15.0 2.2 22 1-22 1-22 (47)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=114.16 Aligned_cols=85 Identities=35% Similarity=0.444 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
-..++.++..|+.+++.+ +|.+|+..|++||.+ +|.++.+|.|||.+|.++|.++.|+.+|+.+|.+||.+.++
T Consensus 78 ~~~AE~LK~eGN~~m~~~--~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNK--DYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence 346888999999999999 899999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC
Q 033417 108 VILCSGSHPNQ 118 (119)
Q Consensus 108 ~~~~a~~~~~~ 118 (119)
|-++|.+|+.+
T Consensus 152 y~RLG~A~~~~ 162 (304)
T KOG0553|consen 152 YGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHcc
Confidence 99999998754
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4e-16 Score=114.61 Aligned_cols=97 Identities=36% Similarity=0.522 Sum_probs=90.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++.++.+....++|+.+...+..|+.+|+.| +|..|+..|+++|.. +|+++.+|.|||.||.++|++..|+.+
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g--dy~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKG--DYPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556666777789999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+.+++++|++.++|++.|.++.
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.2e-15 Score=97.29 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+..+..++|.+...+..+|.++...| ++++|+..|.+++.+ +|.++.+++++|.|+..+|++++|+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~y~~Al~l----~p~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--EYTTAINFYGHALML----DASHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556677777777777777777777777777 777777777777777 777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|++++.++|+++..+..+|.+.
T Consensus 115 ~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 115 FQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHhCCCChHHHHHHHHHH
Confidence 7777777777777777776553
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=5.1e-15 Score=94.44 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=85.4
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+++...++|+. +...|..++..| ++++|+..|.+++.+ +|.++.++.++|.++..+|++++|+..|+++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG--DYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5788889999986 667899999999 899999999999999 9999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHhcccC
Q 033417 98 LKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 98 l~l~p~~~~a~~~~a~~~~~ 117 (119)
+.++|+++.+++++|.++..
T Consensus 85 l~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHH
Confidence 99999999999999998753
No 5
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=9.3e-16 Score=112.14 Aligned_cols=83 Identities=33% Similarity=0.549 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
-+.+..+.++||.+|+.| .|++||.+|++||++ +|+.+.+|.||+.||..+|+|++.+++|.++|+++|+++++
T Consensus 112 ~k~A~~lK~~GN~~f~~k--kY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA 185 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNK--KYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA 185 (606)
T ss_pred HHHHHHHHhhhhhhhhcc--cHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence 446889999999999999 799999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 033417 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++|++.++-
T Consensus 186 l~RRA~A~E 194 (606)
T KOG0547|consen 186 LLRRASAHE 194 (606)
T ss_pred HHHHHHHHH
Confidence 999998873
No 6
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.63 E-value=5.8e-15 Score=82.67 Aligned_cols=67 Identities=36% Similarity=0.560 Sum_probs=64.6
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRALTDTEEALKLCP 102 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p 102 (119)
++..|...|..++..| +|++|+..|+++|++ +|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG--DYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4778999999999999 999999999999999 9999999999999999999 79999999999999998
No 7
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=1.1e-13 Score=88.79 Aligned_cols=92 Identities=7% Similarity=-0.057 Sum_probs=76.0
Q ss_pred HHHHHHhc-HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 20 LDAIAALK-ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+..+..+. ++..+.++..|..++..| ++++|...|+....+ +|.++..|+++|.|+..+|+|.+||..|.+++
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455567 778888888888888888 788888888888888 88888888888888888888888888888888
Q ss_pred HhCCCcHHHHHHHHhcccC
Q 033417 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+++.+++..|.|++.
T Consensus 97 ~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred hcCCCCchHHHHHHHHHHH
Confidence 8888888888888888754
No 8
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.4e-14 Score=98.22 Aligned_cols=113 Identities=35% Similarity=0.527 Sum_probs=91.5
Q ss_pred cccCCCCCCCChh-hHHHHHHHHHh-----cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417 3 LWMDAESEPKTES-EKADLDAIAAL-----KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
+||.+.+.+..+. .+..++.+... --+.+.-+.+.||.+|+.. +|..|+.+|+++|.....+...++.+|.|
T Consensus 47 fFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~K--ryk~A~~~Yt~Glk~kc~D~dlnavLY~N 124 (390)
T KOG0551|consen 47 FFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEK--RYKDAVESYTEGLKKKCADPDLNAVLYTN 124 (390)
T ss_pred HHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhh--hHHHHHHHHHHHHhhcCCCccHHHHHHhh
Confidence 6777766654442 22333333332 1337888999999999987 89999999999999855545677899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 77 RAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
||.|.+.+|+|..|+.+|.+++.++|++.+++++-|.|++.
T Consensus 125 RAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 125 RAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998753
No 9
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=2.1e-13 Score=85.31 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=61.7
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.++.+...+|++.......|..++..| ++++|+..+++++.. +|.++.++.++|.++..+|++.+|+..+++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQG--RYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666 666666666666666 66666666666666666666666666666666
Q ss_pred HhCCCcHHHHHHHHhccc
Q 033417 99 KLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~ 116 (119)
+++|+++..++.+|.++.
T Consensus 79 ~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLL 96 (135)
T ss_pred hcCCCChHHHHHHHHHHH
Confidence 666666666666666554
No 10
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=9.5e-14 Score=92.19 Aligned_cols=87 Identities=31% Similarity=0.425 Sum_probs=77.9
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
..+..+...||.+|..| +|.+|...|+.||+++|.. ......+|.|||.|.++++.++.||.+|.++|+++|.+.++
T Consensus 93 ~kad~lK~EGN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 35778999999999999 9999999999999996653 22446799999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
+.++|.+|-+
T Consensus 171 l~RRAeayek 180 (271)
T KOG4234|consen 171 LERRAEAYEK 180 (271)
T ss_pred HHHHHHHHHh
Confidence 9999998854
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=4.7e-13 Score=96.65 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+.++..++|.++..+..+|.+++..| ++++|+..+++++.+ +|.++.+|+++|.+++.+|+|++|+.
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG--NFTEAVADANKAIEL----DPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 356888999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.|+++++++|++..++..++.|.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998887763
No 12
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.48 E-value=7.5e-13 Score=73.27 Aligned_cols=65 Identities=28% Similarity=0.400 Sum_probs=60.2
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+.+|..++..| +|++|+..|++++.. .|.++.+++.+|.|+..+|++++|+..++++++++|+++
T Consensus 1 ~~~a~~~~~~g--~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQG--DYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999 999999999999999 999999999999999999999999999999999999875
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=4e-13 Score=93.35 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+++..+.++..++|+++..|.+++-+|.+.| +|+.|+.....+|.+ +|....+|.++|.+|+.+|++++|+..
T Consensus 98 ~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--~~~~AVkDce~Al~i----Dp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 98 QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--EYEDAVKDCESALSI----DPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--chHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 35677888999999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHh
Q 033417 94 TEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~ 113 (119)
|+++|+++|+|....-.+..
T Consensus 172 ykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 172 YKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhhhccCCCcHHHHHHHHH
Confidence 99999999999866655543
No 14
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=7.1e-13 Score=88.69 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=91.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH-HHhcC--HHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN-LLLGN--YRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~-~~l~~--~~~ 89 (119)
.++.+..+......+|+++..|..+|..+...| ++++|+..|++++.+ .|+++.++.+.|.++ ...|+ +++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--DYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677889999999999999999999999999 999999999999999 999999999999985 67787 599
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 90 ALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+..++++++++|+++.+++.+|.+++.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 15
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-13 Score=98.38 Aligned_cols=89 Identities=36% Similarity=0.552 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.|+....+...|+..|+.| +|..|.+.|+.+|.+.|.+...++.+|.|||.+..++|+..+|+++|++++.|+|.+.+
T Consensus 245 ~~k~le~~k~~gN~~fk~G--~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNG--NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hHHHHHHHHhhhhhHhhcc--chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 3556778999999999999 89999999999999977766678899999999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 033417 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
++.++|.|++.
T Consensus 323 all~ra~c~l~ 333 (486)
T KOG0550|consen 323 ALLRRANCHLA 333 (486)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=2.6e-12 Score=90.62 Aligned_cols=96 Identities=21% Similarity=0.118 Sum_probs=70.6
Q ss_pred hhHHHHHHHHH---hcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 15 SEKADLDAIAA---LKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 15 ~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
..+..+..+.. ++| ..+..+.++|..+...| ++++|+..|++++.+ +|+++.+|+++|.++..+|++++|
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 33444444443 233 33677888888888877 788888888888888 788888888888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+..++++++++|++..+++++|.++.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888888888888877654
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.44 E-value=1e-12 Score=94.91 Aligned_cols=80 Identities=33% Similarity=0.506 Sum_probs=75.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+...|..+|..| +|++|+..|+++|.+ +|.++.+|+++|.+++.+|++++|+.+++++++++|+++.+|+++
T Consensus 3 ~~l~~~a~~a~~~~--~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~l 76 (356)
T PLN03088 3 KDLEDKAKEAFVDD--DFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34778899999999 999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhcccC
Q 033417 112 SGSHPN 117 (119)
Q Consensus 112 a~~~~~ 117 (119)
|.+++.
T Consensus 77 g~~~~~ 82 (356)
T PLN03088 77 GTACMK 82 (356)
T ss_pred HHHHHH
Confidence 998754
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=2.4e-12 Score=98.52 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...++++..++|.....+...|.++...| ++++|+..|++++++ +|+++.+++++|.+++.+|++++|+.+|
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555555555555555 555555555555555 5555666666666666666666666666
Q ss_pred HHHHHhCCCcHHHHHHHHhcc
Q 033417 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|++..+++.+|.++
T Consensus 423 ~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHH
Confidence 666666666666665555554
No 19
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.3e-12 Score=92.67 Aligned_cols=86 Identities=29% Similarity=0.302 Sum_probs=74.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---C--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---D--------SENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+....+.|+.+|+.| +|..|+..|.+++...... + .....++.|++.|++++++|.+|+..|.++|
T Consensus 207 ~A~~~ke~Gn~~fK~g--k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEG--KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHhhhHHHhhc--hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4777889999999999 8999999999999874321 1 1224589999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHhcccC
Q 033417 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+|++|+|++|++++.
T Consensus 285 e~~~~N~KALyRrG~A~l~ 303 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLA 303 (397)
T ss_pred hcCCCchhHHHHHHHHHHh
Confidence 9999999999999999864
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=6.7e-12 Score=88.56 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|+++.++...|..+...| ++++|+..|.+++++ +|++..++.++|.++...|++++|+.
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 446778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHH
Q 033417 93 DTEEALKLCPTNVK 106 (119)
Q Consensus 93 ~~~~al~l~p~~~~ 106 (119)
+++++++++|+++.
T Consensus 154 ~~~~al~~~P~~~~ 167 (296)
T PRK11189 154 DLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHhCCCCHH
Confidence 99999999999873
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.39 E-value=2.1e-12 Score=97.39 Aligned_cols=92 Identities=27% Similarity=0.250 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
++.....+..++|..++++.++|+.+-..| +.+.|+..|++||.+ +|..++++.|+|.+|-..|+..+||..|+
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g--~v~~A~q~y~rAI~~----nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMG--DVSAAIQCYTRAIQI----NPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhh--hHHHHHHHHHHHHhc----CcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 344444444445555555555555554444 445555555555555 45555555555555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHh
Q 033417 96 EALKLCPTNVKVVILCSG 113 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~ 113 (119)
.+|+++|++++++-+++.
T Consensus 481 ~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHccCCCCchhhhHHHH
Confidence 555555555555544443
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=8.5e-12 Score=80.11 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=79.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+++...+..+..++|.++..|+++|.++-..| +|.+|+..|.+++.+ +|+++..+++.|.|++.+|+.+.|..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L----~~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--HWGEAIYAYGRAAQI----KIDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 356778899999999999999999999999988 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhC
Q 033417 93 DTEEALKLC 101 (119)
Q Consensus 93 ~~~~al~l~ 101 (119)
.|+.++.+.
T Consensus 125 aF~~Ai~~~ 133 (157)
T PRK15363 125 ALKAVVRIC 133 (157)
T ss_pred HHHHHHHHh
Confidence 999999986
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=3.6e-12 Score=96.14 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+...+.++....|..+.+..++|.++-++| ++++|+.+|.++|++ +|..+.++.|+|..|-.+|+...|++
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg--nl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQG--NLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--cHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHH
Confidence 345566677777777777777777777777777 678888888888888 78888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|.++|.++|...+++-++|.+|-
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhh
Confidence 888888888888888877777663
No 24
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.38 E-value=1.4e-11 Score=77.00 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++.+...+|.+...+...|..++..| ++++|+..+.+++.. +|+++..++++|.++...|++++|+.
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--EYEEAIDAYALAAAL----DPDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 346777888888999999999999999999998 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHH
Q 033417 93 DTEEALKLCPTNVKVV 108 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~ 108 (119)
.++++++++|++....
T Consensus 107 ~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 107 ALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHhccccchHH
Confidence 9999999999887643
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=5.8e-12 Score=96.43 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=92.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|+++..+..+|..++..| ++++|+..|++++++ +|++...+.++|.++..+|++++|+.
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG--EFAQAGKDYQKSIDL----DPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788889999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.+++++++.|+++.+++.+|.++..
T Consensus 455 ~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 455 TFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-12 Score=96.15 Aligned_cols=80 Identities=36% Similarity=0.468 Sum_probs=72.6
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..+...||..|..| +|+.|+..|+.+|.+ +|.+..+|.||+.||..+|+|.+|+++..+.++++|+++++|.+
T Consensus 2 a~e~k~kgnaa~s~~--d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r 75 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSG--DFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR 75 (539)
T ss_pred hhHHHHHHHhhcccc--cHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHH
Confidence 345678999999999 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 033417 111 CSGSHP 116 (119)
Q Consensus 111 ~a~~~~ 116 (119)
+|.++.
T Consensus 76 ~Gaa~~ 81 (539)
T KOG0548|consen 76 KGAALF 81 (539)
T ss_pred hHHHHH
Confidence 988763
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=6.5e-12 Score=95.25 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|+++.++...|..+...| ++++|+..|++++++ +|+++.+++++|.++...|++++|+.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS--EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467888999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhc
Q 033417 93 DTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.++++++++|.++.+++.++.+
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999988776655443
No 28
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.32 E-value=3.1e-12 Score=91.07 Aligned_cols=80 Identities=38% Similarity=0.480 Sum_probs=74.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
....+.++||.+|+.| .|++||.+|++++.. .|-++..+.|||.+|+++++|..|..+|..++.++..+.++|-
T Consensus 96 ~~SEiKE~GN~yFKQg--Ky~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQG--KYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhHHHHHhhhhhhhcc--chhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3445889999999999 799999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 033417 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
++|.+-
T Consensus 170 RR~~AR 175 (536)
T KOG4648|consen 170 RRMQAR 175 (536)
T ss_pred HHHHHH
Confidence 998753
No 29
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.31 E-value=2.6e-11 Score=68.32 Aligned_cols=70 Identities=30% Similarity=0.502 Sum_probs=64.9
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
...+++.+ +|+.|+..+++++.+ +|+++..+..+|.|+..+|++.+|+.+++++++..|+++.+...++.
T Consensus 2 ~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQE--DYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35678888 999999999999999 99999999999999999999999999999999999999988877664
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=3.3e-11 Score=91.43 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch-------HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK-------KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.+++...++++..++|+.+.++...|.++...+. +++++|+..+++++++ +|+++.++..+|.++...|
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcc
Confidence 3577788999999999999999999987764320 1589999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..|+++++++|+++.+++.+|.++..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=3.7e-11 Score=96.04 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|+ +..+.+.|.++.+.| ++++|+..|.+++.+ +|+++.++.++|.++...|++++|+.
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG--~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRH--NVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777788888886 788888888888888 788888888888888 88888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|+++.+++.+|.++..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888877653
No 32
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.28 E-value=2.8e-11 Score=67.28 Aligned_cols=66 Identities=27% Similarity=0.320 Sum_probs=60.5
Q ss_pred HHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 42 VKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+..| +|++|+..|++++.. .|++..+++.+|.|+++.|++++|...+++++..+|+++..+.-+++
T Consensus 2 l~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQG--DYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTT--HHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhcc--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5667 899999999999999 99999999999999999999999999999999999999888777664
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=4.9e-11 Score=92.38 Aligned_cols=100 Identities=9% Similarity=-0.113 Sum_probs=94.1
Q ss_pred CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
..+++...++.+..+.|++..+..+.+..+.+.+ .+++|+..+++++.. +|+++..++.+|.++..+|++++|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--GIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcchHHHH
Confidence 3567888999999999999999999999999999 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..|++++.-+|++..++..+|.++..
T Consensus 175 ~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 175 ACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-11 Score=83.95 Aligned_cols=82 Identities=35% Similarity=0.462 Sum_probs=76.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+.+.|+.+|... .|..|+..|.++|-+ +|..+..|.|++.|++++++|+.+..+|+++++++|+.++++|
T Consensus 9 ~a~qlkE~gnk~f~~k--~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPK--RYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred HHHHHHhccccccchh--hhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 4667788999999876 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhcccC
Q 033417 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
.+|.+.+.
T Consensus 83 flg~~~l~ 90 (284)
T KOG4642|consen 83 FLGQWLLQ 90 (284)
T ss_pred HHHHHHHh
Confidence 99988754
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.7e-11 Score=89.14 Aligned_cols=97 Identities=22% Similarity=0.312 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.+.++++..++|.....|..+|..+.... +-++-...|.+|.++ +|+++..|+.||+.++-+++|++|+.+|
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4667888888889888888889999998887 889999999999999 9999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhcccC
Q 033417 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++.++|.+.-+|..++.+.++
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHH
Confidence 99999999999999888877654
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.23 E-value=5.1e-11 Score=95.25 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|+++..+.+.|..+...| ++++|+..|.+++++ .|+++.+++++|.++..+|++++|+.
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G--~~eeAi~~l~~AL~l----~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG--DIAQSREMLERAHKG----LPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 457888999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+++++.++|++.......|....
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHH
Confidence 999999999999988887776543
No 37
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.22 E-value=1e-10 Score=66.79 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+|+.+..+.+.|..++..| +|++|+..|++++.+.. ...|..+.++.++|.|+..+|++++|+..+++++++.
T Consensus 1 H~~~a~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4788999999999999999 99999999999998722 1234568899999999999999999999999999863
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.6e-11 Score=90.24 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=82.5
Q ss_pred HHHHhcH--HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 22 AIAALKE--SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 22 ~~~~~~~--~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+...+| .+++....+|..+.-.| +|+.|+.+|+.||.. +|.+..+|+.+|..+..-.+.++||+.|++|++
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~--efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSG--EFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcch--HHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3334466 67888999999999988 999999999999999 999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHhcccC
Q 033417 100 LCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 100 l~p~~~~a~~~~a~~~~~ 117 (119)
|.|.++.+.|++|.+++.
T Consensus 493 LqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMN 510 (579)
T ss_pred cCCCeeeeehhhhhhhhh
Confidence 999999999999998864
No 39
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=2.1e-10 Score=74.94 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++..+..+...|..+...| ++++|+..|.+++...|. .++.+.++.++|.++..+|++++|+..++++++++|++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADG--EYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4567778999999999999 999999999999988322 2234678999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 033417 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++..+|.++.
T Consensus 108 ~~~~lg~~~~ 117 (172)
T PRK02603 108 ALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHH
Confidence 9999988774
No 40
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.6e-11 Score=80.31 Aligned_cols=85 Identities=28% Similarity=0.273 Sum_probs=72.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc--------cC------CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN--------VL------SDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------~~------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
....+.+.||.+|+.| +|.+|...|..||-.. |. .+.....++.|.+.|++..|+|.++++.|.
T Consensus 177 av~~l~q~GN~lfk~~--~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLG--RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhHHHHHhhhhhhhhc--cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4677899999999999 9999999999998541 11 022335588999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|..+|+|++|||++|.++.
T Consensus 255 eiL~~~~~nvKA~frRakAha 275 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHA 275 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHH
Confidence 999999999999999999864
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.2e-11 Score=91.73 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=84.2
Q ss_pred HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...+..-+|..++.|...||++-.++ +++.||.+|.+||.+ +|..+-+|-..|+-+.....++.|..+|+.||.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 34455568999999999999999887 999999999999999 999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHhcccCC
Q 033417 100 LCPTNVKVVILCSGSHPNQ 118 (119)
Q Consensus 100 l~p~~~~a~~~~a~~~~~~ 118 (119)
++|++..|||.+|.+|+++
T Consensus 484 ~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred CCchhhHHHHhhhhheecc
Confidence 9999999999999999865
No 42
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=2.9e-10 Score=81.18 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++...+|++..+|..++.++.+.|+..+++++..+.++++. +|.+..+|.+|+.++..+|+|++++.+|
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444555555555555444444410113444555555555 6666666666666666667777777777
Q ss_pred HHHHHhCCCcHHHHHHHHhcc
Q 033417 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++|+++|.|..+|+.++.++
T Consensus 166 ~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 166 HQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHCCCchhHHHHHHHHH
Confidence 777777777777777766554
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-10 Score=82.85 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------------------------
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------- 65 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------- 65 (119)
++++.-+.++.++||+...+|.-.|-.++... +-..|+..|++||+++|+
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 45666777777777777777777777777766 677777777777777443
Q ss_pred --CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 66 --SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
-.|.++.+|..+|.||.++++.++|+.+|++++.....+..+++++|..|
T Consensus 425 ~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 425 LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 15666666666666666666666666666666666666666666666655
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.2e-10 Score=83.89 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=73.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
-++...--||-+--.+ ++++|+..|++|+.+ +|....+|..+|+-|+.|++...|++.|++|++++|.+..|||
T Consensus 329 R~ETCCiIaNYYSlr~--eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRS--EHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred CccceeeehhHHHHHH--hHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh
Confidence 3445555677777766 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 033417 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
.+|++|
T Consensus 403 GLGQaY 408 (559)
T KOG1155|consen 403 GLGQAY 408 (559)
T ss_pred hhhHHH
Confidence 999987
No 45
>PLN02789 farnesyltranstransferase
Probab=99.19 E-value=7.5e-10 Score=79.07 Aligned_cols=101 Identities=11% Similarity=0.020 Sum_probs=92.8
Q ss_pred CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH--H
Q 033417 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY--R 88 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~--~ 88 (119)
+.++++....+++..++|++..+|..+|.++...|+ ++++++..+.+++.. +|.+..+|.+|+.+..++|.. +
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-DLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCchhhH
Confidence 357889999999999999999999999999999874 689999999999999 999999999999999999874 7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++..++++++++|.|..+|..++.++.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 8899999999999999999999987653
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=2.4e-10 Score=66.29 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=66.7
Q ss_pred ChhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
.+.++..++++...+|+ +...+...|.++++.| +|++|+..+++ +.. ++.++..++..|.|++++|+|++|
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--KYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35677888888888873 6777888999999999 89999999999 778 788888888889999999999999
Q ss_pred HHHHHHH
Q 033417 91 LTDTEEA 97 (119)
Q Consensus 91 ~~~~~~a 97 (119)
+..++++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998874
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=2.5e-10 Score=76.41 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHH-HHhchHh--HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEY-VKKGKKH--YYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+++...++++..++|+++..+...|.++ +..| + +++|...+++++.. +|+++.+++++|.+++.+|++++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g--~~~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAG--QHMTPQTREMIDKALAL----DANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCCHHH
Confidence 45788899999999999999999999986 6666 5 59999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcH
Q 033417 90 ALTDTEEALKLCPTNV 105 (119)
Q Consensus 90 A~~~~~~al~l~p~~~ 105 (119)
|+..++++++++|.+.
T Consensus 163 Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 163 AIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhhCCCCc
Confidence 9999999999988654
No 48
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.16 E-value=1.5e-10 Score=84.89 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=65.9
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+|+++..+.++|..++..| +|++|+..|+++|++ +|+++. +|+|+|.||..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG--RVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999 999999999999999 999885 4999999999999999999999999998
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.15 E-value=5e-10 Score=86.63 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++..++|+++..+...|..+...| ++++|+..+++++.+ +|+++.++.++|.++..+|++++|+..++
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTG--QNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455666666666666666666666666666 666666666666666 66666666666666666666666666666
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
+++..+|++...++.+|.++
T Consensus 343 ~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 343 QLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHhCccchHHHHHHHHHH
Confidence 66666666655554444433
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=7.8e-10 Score=73.33 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc------------------------
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN------------------------ 70 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------------------------ 70 (119)
++...+++....+|.+...+...|..++..| ++++|+..|.+++.. .|.+
T Consensus 49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 49 VAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444455555555555555555555555555 555555555555555 3333
Q ss_pred ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 71 ------------SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 71 ------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
...+.++|.++...|++++|+..+.++++.+|+++.+++.+|.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 344555555555555555666666666655665555555555544
No 51
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.14 E-value=4.2e-10 Score=87.03 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHH----HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYD----AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
.+++...+.++...+|+++..+...|..+...| ++++ |+..|++++.+ +|+++.++.++|.++...|+++
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G--~~~eA~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG--RSREAKLQAAEHWRHALQF----NSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHH
Confidence 346777888888889999999999999999999 7885 89999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+..+++++.++|+++.++..+|.++..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887743
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.14 E-value=9e-10 Score=62.67 Aligned_cols=74 Identities=36% Similarity=0.501 Sum_probs=36.3
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
...|..++..| ++++|+..+.+++.. .|.+..++..+|.++...|++++|+..+++++.+.|.+..+++.+|.+
T Consensus 4 ~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 4 LNLGNLYYKLG--DYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHh--cHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 34444444444 455555555555554 444444444555555555555555555555555555444444444443
No 53
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=1.2e-09 Score=71.08 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
...+..+...|..+...| +|++|+..|.+++.+.+. .+..+.++.++|.++..+|++++|+..|++++.++|.+..+
T Consensus 32 ~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 445788899999999999 999999999999988322 12245689999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 033417 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
+..+|.++.
T Consensus 109 ~~~la~i~~ 117 (168)
T CHL00033 109 LNNMAVICH 117 (168)
T ss_pred HHHHHHHHH
Confidence 999988765
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=2.7e-10 Score=76.95 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+.+.+.++..++|++.+.+.+-|.-++..| .|++|...|++|+.. |. -+.-+..+-|.|.|-++.|+++.|..+++
T Consensus 88 A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg--~~~eA~q~F~~Al~~-P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 88 ADESYRKALSLAPNNGDVLNNYGAFLCAQG--RPEEAMQQFERALAD-PA-YGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred HHHHHHHHHhcCCCccchhhhhhHHHHhCC--ChHHHHHHHHHHHhC-CC-CCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 334444444444444444444444444444 444444444444442 11 23445566777777777777777777777
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
++|+++|+++.+...++..++
T Consensus 164 raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 164 RALELDPQFPPALLELARLHY 184 (250)
T ss_pred HHHHhCcCCChHHHHHHHHHH
Confidence 777777777776666665544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.1e-09 Score=72.51 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=76.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+...|..++..| ++++|+..+.+++.. .|.+..++..+|.++...|++++|+..+++++++.|.+..+++
T Consensus 30 ~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQG--DLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4788899999999999 999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q 033417 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
.+|.++.
T Consensus 104 ~~~~~~~ 110 (234)
T TIGR02521 104 NYGTFLC 110 (234)
T ss_pred HHHHHHH
Confidence 9887764
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.12 E-value=7.1e-10 Score=75.94 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+.....-+|++...+...|...++.| +|..|+..+.++..+ .|.++.+|+.+|.+|.++|++++|...|.++
T Consensus 87 ~~~~~~~~~~~~d~~ll~~~gk~~~~~g--~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 87 AVLQKSAIAYPKDRELLAAQGKNQIRNG--NFGEAVSVLRKAARL----APTDWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred HHHhhhhccCcccHHHHHHHHHHHHHhc--chHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 3444445557888888888999999999 999999999999999 9999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHhccc
Q 033417 98 LKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 98 l~l~p~~~~a~~~~a~~~~ 116 (119)
+++.|..+....++|..|+
T Consensus 161 l~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 161 LELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHhccCCchhhhhHHHHHH
Confidence 9999999999999998775
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=4e-10 Score=80.39 Aligned_cols=87 Identities=26% Similarity=0.300 Sum_probs=80.2
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
-+|.++....++|+.++..| .+..|+..|..||+. +|++..+++.||.+|+.+|+...|+.++.++|++.|+..
T Consensus 33 ~~~advekhlElGk~lla~~--Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARG--QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence 36788999999999999988 899999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC
Q 033417 106 KVVILCSGSHPNQ 118 (119)
Q Consensus 106 ~a~~~~a~~~~~~ 118 (119)
-+...+|.+++++
T Consensus 107 ~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 107 AARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHhchhhhhc
Confidence 9999999988764
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=3.3e-09 Score=64.31 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc---cHHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~ 86 (119)
.+++...+..+...+|+. ...+...|.+++..| ++++|+..|..++.. .|+ .+.++..+|.++..+|+
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--KYADAAKAFLAVVKK----YPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHH----CCCCCcccHHHHHHHHHHHHhCC
Confidence 345777788887777654 567888999999998 899999999999988 554 36788999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHH
Q 033417 87 YRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
+++|+..++++++..|++..+..
T Consensus 92 ~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 92 KEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred hHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999998876554
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=1.4e-09 Score=66.05 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=71.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--- 104 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--- 104 (119)
+..++..|..+++.| ++++|+..|.+++.. .|++ +.+++.+|.+++..|++++|+..++.++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAG--DYADAIQAFQAFLKK----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 356789999999999 899999999999998 5554 6789999999999999999999999999999885
Q ss_pred HHHHHHHHhccc
Q 033417 105 VKVVILCSGSHP 116 (119)
Q Consensus 105 ~~a~~~~a~~~~ 116 (119)
+.+++.+|.++.
T Consensus 76 ~~~~~~~~~~~~ 87 (119)
T TIGR02795 76 PDALLKLGMSLQ 87 (119)
T ss_pred cHHHHHHHHHHH
Confidence 678888888765
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=3.7e-10 Score=85.22 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=74.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+..+...+|.+-.+|+..|.+|.+.+ .++.|.-.|++|+++ +|.+..+....|..+.++|+.++|+.
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe--k~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE--KLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccc--hhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHH
Confidence 345666677777778888888888888888877 688888888888888 77777777777777777777777777
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+++|+-++|.++-..|.+|.++.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHH
Confidence 777777777777777777776654
No 61
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2.6e-09 Score=60.71 Aligned_cols=85 Identities=27% Similarity=0.378 Sum_probs=77.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.......|.....+...|..+...+ ++++|+..+.+++.. .|.+...+..+|.++...|++++|..
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG--KYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHHHHhHHHHHH
Confidence 456777888888888988899999999999988 899999999999999 88888999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 033417 93 DTEEALKLCPT 103 (119)
Q Consensus 93 ~~~~al~l~p~ 103 (119)
.+.++++++|+
T Consensus 90 ~~~~~~~~~~~ 100 (100)
T cd00189 90 AYEKALELDPN 100 (100)
T ss_pred HHHHHHccCCC
Confidence 99999998874
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=2e-09 Score=72.86 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.+.++++..++|+...++.-++..+.+.| +.+.|-+.|++|+++ +|.+.++++|-|..+...|+|++|...|
T Consensus 53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl----~p~~GdVLNNYG~FLC~qg~~~eA~q~F 126 (250)
T COG3063 53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLG--ENDLADESYRKALSL----APNNGDVLNNYGAFLCAQGRPEEAMQQF 126 (250)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChhhHHHHHHHHHhc----CCCccchhhhhhHHHHhCCChHHHHHHH
Confidence 4556667777777777777777777777777 677777777777777 7777777777777777777777777777
Q ss_pred HHHHHh--CCCcHHHHHHHHhccc
Q 033417 95 EEALKL--CPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l--~p~~~~a~~~~a~~~~ 116 (119)
++++.. -|....++-++|.|-+
T Consensus 127 ~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 127 ERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHhCCCCCCcchhhhhhHHHHh
Confidence 777662 2344566666666544
No 63
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.3e-09 Score=75.55 Aligned_cols=78 Identities=26% Similarity=0.265 Sum_probs=72.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...+.+.+.++.+.+ +|..|+....++|.+ +|.++.+++++|.+++.+|+|+.|+.+|+++++++|.|..+...
T Consensus 257 ~~~~lNlA~c~lKl~--~~~~Ai~~c~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 257 LACHLNLAACYLKLK--EYKEAIESCNKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHhhHHHHHHHhhh--hHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 556789999999998 999999999999999 99999999999999999999999999999999999999888776
Q ss_pred HHhc
Q 033417 111 CSGS 114 (119)
Q Consensus 111 ~a~~ 114 (119)
+..+
T Consensus 331 l~~l 334 (397)
T KOG0543|consen 331 LIKL 334 (397)
T ss_pred HHHH
Confidence 6554
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=1.2e-09 Score=74.18 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
++..+..++..|..++..| +|++|+..|++++.. .|.++ .+++.+|.++...|++++|+..++++++..|+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3446788999999999999 899999999999999 66654 68899999999999999999999999999998
Q ss_pred cHH---HHHHHHhcccC
Q 033417 104 NVK---VVILCSGSHPN 117 (119)
Q Consensus 104 ~~~---a~~~~a~~~~~ 117 (119)
++. +++.+|.++..
T Consensus 103 ~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYN 119 (235)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 876 78999988754
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=1.5e-09 Score=75.69 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------------------------CCcccHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------------------------SDSENSVLYANR 77 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~ 77 (119)
+.++..|...|..+.+.| ++++|+..|++++++.|. ..|.++.++..+
T Consensus 143 ~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLG--DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp -T-HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345556666666666666 566666666666666442 146667788888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|.++..+|++++|+..+++++..+|+++..+...|.++..
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHhcccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999887753
No 66
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.03 E-value=8.1e-11 Score=86.27 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=75.4
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..+.+.++..+..+ .|+.|+..|+++|++ +|+++.++.+|+.++++.+++..|+.|+.++++++|...++|++
T Consensus 4 a~e~k~ean~~l~~~--~fd~avdlysKaI~l----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 4 AEELKNEANEALKDK--VFDVAVDLYSKAIEL----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hhhhhhHHhhhcccc--hHHHHHHHHHHHHhc----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 556778899999988 899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhcccC
Q 033417 111 CSGSHPN 117 (119)
Q Consensus 111 ~a~~~~~ 117 (119)
+|.+.+.
T Consensus 78 rg~a~m~ 84 (476)
T KOG0376|consen 78 RGTAVMA 84 (476)
T ss_pred ccHHHHh
Confidence 9988764
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.02 E-value=2.4e-09 Score=87.28 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=67.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH--------------HHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV--------------LYANRA 78 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~a 78 (119)
.++++..++++..++|+++..+..+|.++++.| ++++|+..|++++++ +|++.. .....|
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQG--DRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHHHHHHHH
Confidence 356777888888888988999999999999988 899999999999888 443221 122335
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++...|++++|+..|+++++++|++..+++.+|.++.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM 396 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55555566666666666666666665555555555543
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=2.5e-09 Score=69.12 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=71.8
Q ss_pred HHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 23 IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+..+.++..+..+..|-.++..| ++++|...|+-...+ +|.++..++.+|.|+..+++|++|+..|..+..+++
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQG--RLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33456777888888888888888 788888888888888 888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHhcccC
Q 033417 103 TNVKVVILCSGSHPN 117 (119)
Q Consensus 103 ~~~~a~~~~a~~~~~ 117 (119)
+++...+..|.||+.
T Consensus 103 ~dp~p~f~agqC~l~ 117 (165)
T PRK15331 103 NDYRPVFFTGQCQLL 117 (165)
T ss_pred CCCCccchHHHHHHH
Confidence 888888888888754
No 69
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=3.7e-09 Score=82.02 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+++..+...|..+...| + .+|+..+++++.+ .|+++.++.++|.++..+|++++|+..
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~-~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK--D-PRALEYAEKALKL----APNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--c-HHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555666666666666666666666666666 5 5566666666666 677777777788888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|.++.+++.+|.++.
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHH
Confidence 88888888888888888877764
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.00 E-value=4.2e-09 Score=85.86 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH--------------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA-------------- 78 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a-------------- 78 (119)
.+++...+.++..++|.++.++..+|.++...| ++++|+..|++++.+ +|.+..++..++
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--DYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 456778888999999999999999999999999 899999999999999 777665554443
Q ss_pred ----------------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 79 ----------------------------HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 79 ----------------------------~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++...|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444567899999999999999999999999999987754
No 71
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.98 E-value=6.2e-09 Score=80.87 Aligned_cols=100 Identities=6% Similarity=-0.054 Sum_probs=90.2
Q ss_pred CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++.++...+..+....|.+++++..+|.+..+.| .+++|...+..++++ .|++..++.+++.++.+++++++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAH--RSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHH
Confidence 3444555555566667889999999999999999 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..+++++..+|++..+++.+|.++.+
T Consensus 141 ~~~~~~l~~~p~~~~~~~~~a~~l~~ 166 (694)
T PRK15179 141 AEIELYFSGGSSSAREILLEAKSWDE 166 (694)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.98 E-value=5.3e-09 Score=81.16 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+....+...|..++..| ++++|+..+.+++.. +|.+..++..+|.++...|++++|+..
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN--RFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 45556666666677777777777777777777 677777777777777 777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.+++.++.++.
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~ 238 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILI 238 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHH
Confidence 77777777777777777766553
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.98 E-value=1.1e-09 Score=60.97 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 69 ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK 49 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999864
No 74
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.96 E-value=8.4e-09 Score=81.08 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|.++..+...|..+...| ++++|+..+++++.. .|+++. +..+|.++...|++++|+..
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAG--QYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 45667777777788888888888888888887 788888888888888 888888 88888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|++..+++.+|.++
T Consensus 139 l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888888777665
No 75
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=1.1e-09 Score=63.43 Aligned_cols=65 Identities=28% Similarity=0.389 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 48 HYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+.|+..++++++. .|. +...++.+|.|++++|+|++|+..+++ ++.+|.++..++.+|.|+++
T Consensus 4 ~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 4 NYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp -HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999 553 677788899999999999999999999 88999999999999998864
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=2.3e-08 Score=69.69 Aligned_cols=90 Identities=10% Similarity=0.012 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++...+.......|+. +.+++-.|..++..| +|++|+..|.+.+..-|. .|..+.+++.+|.++..+|++++|+
T Consensus 161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--KKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHH
Confidence 4555566666666665 456777777777776 677777777777766333 4445667777777777777777777
Q ss_pred HHHHHHHHhCCCcHHH
Q 033417 92 TDTEEALKLCPTNVKV 107 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a 107 (119)
..|+++++..|++..+
T Consensus 238 ~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 238 AVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHCcCCHHH
Confidence 7777777777766544
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=75.00 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++.+.++.+.+..|+++-.+.-.+.+++..+ +..+|++.+++++.+ +|..+.+..+.|.++++.|++.+|+.
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--KAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 456778899999999999999999999999999 799999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..+..+.-+|+++..|..+|++|-.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 9999999999999999999998743
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.7e-09 Score=79.00 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=79.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+++++.+..++..+|.+...|..+|-.+-... ..++||..|++|+++ .|..+.+++|+|.+++.+|.|.||+.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 357888999999999999999999999998877 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 033417 93 DTEEALKLCPT 103 (119)
Q Consensus 93 ~~~~al~l~p~ 103 (119)
++-.||.+.+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 99999998764
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=3.7e-08 Score=64.32 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHhcHH---HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC---
Q 033417 13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN--- 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~--- 86 (119)
.+++...+.++..+.|+ .+..+...|.++.+.| ++++|+..|.+++.. .|.+...+..+|.++..+|+
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--EHDKALEYYHQALEL----NPKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHh
Confidence 34566777777766554 3578999999999999 999999999999999 99999999999999999887
Q ss_pred -----------HHHHHHHHHHHHHhCCCcH
Q 033417 87 -----------YRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 87 -----------~~~A~~~~~~al~l~p~~~ 105 (119)
+.+|+..+++++.++|++.
T Consensus 125 a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 125 EAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 6889999999999999863
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.8e-08 Score=68.48 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHh--
Q 033417 13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLL-- 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l-- 84 (119)
.+++...++.+...+|+++ .++...|..++..| ++++|+..|.++++. .|+++. +++.+|.+++..
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~g~~~~~~~~ 122 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRL----HPNHPDADYAYYLRGLSNYNQID 122 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCCchHHHHHHHHHHHHHhcc
Confidence 3456777888888877654 68899999999999 999999999999999 665554 789999999987
Q ss_pred ------cCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 85 ------GNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 85 ------~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
|++++|+..+++++..+|++..++
T Consensus 123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 123 RVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 889999999999999999986553
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=1.7e-08 Score=72.99 Aligned_cols=102 Identities=10% Similarity=-0.025 Sum_probs=83.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|++...+...|..++..| ++++|+..+++++...+.........+..+|.++...|++++|+.
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG--EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456888899999999999999999999999998 899999999988875111111234577888999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++.+|.+..++..++.++.
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHH
Confidence 999999988888888888877664
No 82
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=2.9e-08 Score=71.70 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-----HHHHHHHHHHHHHhcCHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-----SVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~a~~~~~l~~~~~ 89 (119)
++...+.+....+|.....+...+..+...| ++++|+..+.+++.. .|.. ...+..+|.++...|++++
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 4445555555556666666666666666666 677777776666665 3322 2345566666666777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 90 ALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+..++++++++|++..+++.+|.++.
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~ 225 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence 777777777777766666666666553
No 83
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=2.1e-08 Score=78.85 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+.++...+|..+..+...|..+...| ++++|+..|++++.+ +|.++.++..+|.++...|++++|+.
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345667777777778888889999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++.+|+++. ++.+|.++.
T Consensus 105 ~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 105 KAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHH
Confidence 99999999999999 999988764
No 84
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.88 E-value=6.3e-08 Score=63.45 Aligned_cols=94 Identities=18% Similarity=0.110 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc--------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
+.+.+..+.....||.+++.+.+-|..+.... ++.+++|+..|+++|.+ +|+...++++.|.++..++
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHH
Confidence 45667777888899999999999999987653 12567889999999999 9999999999999998865
Q ss_pred C-----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 86 N-----------YRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 86 ~-----------~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
. |++|..+|+++.+.+|+|.--...+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3 7899999999999999886544333
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7e-09 Score=77.53 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC---cccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD---SENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+...+..+..+.|.++..+.+.|.+.|..+ .|.+|+..|+.++...+.+. +.....+.|+|+++.+++.+++||.
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~--~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYE--EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHh--hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 445677777888888888888888888766 78888888888884433322 2234567888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++|.+.|.++.+|-.+|.+|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHH
Confidence 888888888888888888887763
No 86
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=6.9e-08 Score=66.36 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=85.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~ 89 (119)
+.++++.+......-+.+.++|.+.+..|+..| +|++|.-+|++.+-+ .|.++..+..+|.+++-+| ++.-
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLI----QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 346777888888888999999999999999999 999999999999999 9999999999999988765 6889
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 90 ALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
|..+|.++++++|.+..+++.+-.
T Consensus 210 arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999988887643
No 87
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-08 Score=68.61 Aligned_cols=97 Identities=20% Similarity=0.172 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAL 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~ 91 (119)
.....++.....||.+++.|..+|..++..| ++..|...|.+++++ .|+++.++...|.+++... ...++.
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--~~~~A~~AY~~A~rL----~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMALG--RASDALLAYRNALRL----AGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3344566666789999999999999999999 999999999999999 8999999988888877653 367888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..+++++.+||+++.+.+-+|..+++
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 89999999999999999998877654
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.85 E-value=4e-08 Score=65.95 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=71.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---VK 106 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~ 106 (119)
.+..++..|...+..| +|.+|+..|++.+..-|. .|.-+.+.+.+|.++++.|++.+|+..+++.++..|++ +.
T Consensus 4 ~~~~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQG--DYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 4778999999999999 999999999999988555 55667899999999999999999999999999999976 47
Q ss_pred HHHHHHhcccC
Q 033417 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
++|.+|.+++.
T Consensus 81 A~Y~~g~~~~~ 91 (203)
T PF13525_consen 81 ALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999988653
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.85 E-value=9.1e-08 Score=62.15 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHhcHH---HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH-------
Q 033417 13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL------- 82 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~------- 82 (119)
.+++...+.++..+.|+ .+..+.+.|.++...| ++++|+..|.+++.+ .|.....+.++|.++.
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~~----~~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--EHTKALEYYFQALER----NPFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHhhHHHH
Confidence 45667778888777554 4568999999999999 899999999999999 8988999999999998
Q ss_pred HhcCHH-------HHHHHHHHHHHhCCCcH
Q 033417 83 LLGNYR-------RALTDTEEALKLCPTNV 105 (119)
Q Consensus 83 ~l~~~~-------~A~~~~~~al~l~p~~~ 105 (119)
.+|+++ +|+..+++++..+|++.
T Consensus 125 ~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 125 EQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 777776 55566666778888653
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.82 E-value=7.5e-08 Score=66.43 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLLGNYRRALTDTEEALKLCPTN-- 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-- 104 (119)
.+..++..|...+..| +|++|+..|++.+.. .|..+. +.+.+|.++++++++.+|+..+++.++++|++
T Consensus 31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4677889999999999 999999999999999 665554 45889999999999999999999999999876
Q ss_pred -HHHHHHHHhcc
Q 033417 105 -VKVVILCSGSH 115 (119)
Q Consensus 105 -~~a~~~~a~~~ 115 (119)
+.++|.+|.++
T Consensus 105 ~~~a~Y~~g~~~ 116 (243)
T PRK10866 105 IDYVLYMRGLTN 116 (243)
T ss_pred hHHHHHHHHHhh
Confidence 57889999875
No 91
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.81 E-value=1.4e-08 Score=48.90 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999974
No 92
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.81 E-value=2.4e-08 Score=51.07 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
+.++..+|.++..+|++++|+..++++++.+|+++.++..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35688899999999999999999999999999999999998864
No 93
>PRK15331 chaperone protein SicA; Provisional
Probab=98.81 E-value=5.9e-08 Score=62.82 Aligned_cols=86 Identities=10% Similarity=-0.034 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+..+...+|-+.+.+..+|.++...+ +|++|+..|..+..+ +++++...+..|.|++.+|+...|+..
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--QFQKACDLYAVAFTL----LKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHc----ccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 45777889999999999999999999999887 999999999999999 889999999999999999999999999
Q ss_pred HHHHHHhCCCcHH
Q 033417 94 TEEALKLCPTNVK 106 (119)
Q Consensus 94 ~~~al~l~p~~~~ 106 (119)
+..++. +|.+..
T Consensus 128 f~~a~~-~~~~~~ 139 (165)
T PRK15331 128 FELVNE-RTEDES 139 (165)
T ss_pred HHHHHh-CcchHH
Confidence 999998 565443
No 94
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.81 E-value=9.1e-08 Score=60.66 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=72.6
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a 107 (119)
+..++..|...++.| +|.+|+..++.....-|- .+-...+...++.+|++.++|.+|+..+++-++++|+++ -+
T Consensus 10 ~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKG--NYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 667899999999999 999999999998877443 445567889999999999999999999999999999875 67
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
+|.+|.+++.
T Consensus 87 ~Y~~gL~~~~ 96 (142)
T PF13512_consen 87 YYMRGLSYYE 96 (142)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.78 E-value=1e-07 Score=74.39 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++++.+..+..++|..+.+|..+|.++-+.| +.++|+...-.|--+ +|.+...|...+..-..+|++.+|+-+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 46778888999999999999999999999999 899999999999888 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|.+||+.+|.+++..++++..|.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999999999887764
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=5.7e-08 Score=69.58 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
++..+.++...+|++-.+++.+|..|...| .-..|+..+++.|++ .|+...+...||.+++++|.+++|..+|+
T Consensus 57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmG--ksk~al~Dl~rVlel----KpDF~~ARiQRg~vllK~Gele~A~~DF~ 130 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMG--KSKAALQDLSRVLEL----KPDFMAARIQRGVVLLKQGELEQAEADFD 130 (504)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhhc--CCccchhhHHHHHhc----CccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence 455677778889999999999999999999 689999999999999 99999999999999999999999999999
Q ss_pred HHHHhCCCc---HHHHHHHHh
Q 033417 96 EALKLCPTN---VKVVILCSG 113 (119)
Q Consensus 96 ~al~l~p~~---~~a~~~~a~ 113 (119)
++|+-+|.+ .+++-+++.
T Consensus 131 ~vl~~~~s~~~~~eaqskl~~ 151 (504)
T KOG0624|consen 131 QVLQHEPSNGLVLEAQSKLAL 151 (504)
T ss_pred HHHhcCCCcchhHHHHHHHHh
Confidence 999999944 455555443
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.3e-07 Score=62.18 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..|.++|.+.++.+ .++.||...+++|++ .|.+-.++.+||.+|.++.+|++|+.+|+++++++|..-++.-
T Consensus 133 rsIly~Nraaa~iKl~--k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLR--KWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHHhhhHHHHHHhh--hHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 4666889999999999 699999999999999 9999999999999999999999999999999999998876654
Q ss_pred HH
Q 033417 110 LC 111 (119)
Q Consensus 110 ~~ 111 (119)
..
T Consensus 207 ~i 208 (271)
T KOG4234|consen 207 AI 208 (271)
T ss_pred HH
Confidence 43
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-07 Score=73.12 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++++...+..+..+.|-.+..|+..|..+...| .+.+|...|..|+.+ +|+.+.....+|.++++.|+..-|..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~--~~~EA~~af~~Al~l----dP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG--QLEEAKEAFLVALAL----DPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH--hhHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 445666788888899999999999999999988 899999999999999 99999999999999999998666665
Q ss_pred --HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 --DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 --~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
....+++++|.++++||.+|.++.+
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988754
No 99
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.6e-09 Score=74.57 Aligned_cols=82 Identities=32% Similarity=0.436 Sum_probs=77.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+......|+..++.. +|.+|+..|+.||++ .|+++..|.+|+.+++.+|+|++|..++++.++++|..++++.
T Consensus 48 ~Ae~~k~~gn~~yk~k--~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~ 121 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQK--TYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQL 121 (486)
T ss_pred HHHHHHhhcchHHHHh--hHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcccccc
Confidence 5777889999999987 899999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhcccC
Q 033417 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
+.++|+..
T Consensus 122 r~~~c~~a 129 (486)
T KOG0550|consen 122 REGQCHLA 129 (486)
T ss_pred chhhhhhh
Confidence 99988753
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=7.8e-08 Score=75.64 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+-..+......+|+++..+.-++...|..+ +|..|+.+|..++.++|.. -++....+|+|+.++|+.+.|+..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk--dY~~al~yyk~al~inp~~---~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKK--DYRGALKYYKKALRINPAC---KADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccc--cHHHHHHHHHHHHhcCccc---CCCccchhhhHHHhccchhhHHHH
Confidence 45667888888999999999999999999988 9999999999999994431 234566789999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.++++++|+++.++..+|.+-
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHH
Confidence 9999999999999999988753
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=2.1e-07 Score=63.94 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
..+...+.++..++|+++..+..+|.++-+.| +++.|-.-|.+++++ .|.++.+..|+|..++-.|+++.|...
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G--r~~~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG--RFDEARRAYRQALEL----APNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc--ChhHHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 45778889999999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.++...-+.+..+-.+++.+.
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHH
Confidence 9999888777887777776654
No 102
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.69 E-value=3.4e-07 Score=57.53 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=67.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----H
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN----V 105 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~ 105 (119)
.+..+--.|..+-..| +.+.|++.|.++|.+ .|..+.+|+||+.++.-.|+.++|+.+..+++++.-+. .
T Consensus 42 ~S~~LEl~~valaE~g--~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 42 ASRELELKAIALAEAG--DLDGALELFGQALCL----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 3556677888888888 999999999999999 99999999999999999999999999999999985432 3
Q ss_pred HHHHHHHhcc
Q 033417 106 KVVILCSGSH 115 (119)
Q Consensus 106 ~a~~~~a~~~ 115 (119)
.+|..+|..|
T Consensus 116 qa~vQRg~ly 125 (175)
T KOG4555|consen 116 QAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHH
Confidence 5566666554
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=2.5e-07 Score=64.56 Aligned_cols=80 Identities=13% Similarity=0.010 Sum_probs=68.9
Q ss_pred HHHHHHHhHHH-HHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---
Q 033417 31 AIELKEKGNEY-VKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPT--- 103 (119)
Q Consensus 31 ~~~~~~~g~~~-~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--- 103 (119)
....++.+..+ ++.| +|++|+..|...+.. .|+. +.+++.+|.+|+..|++++|+..|+++++..|+
T Consensus 142 e~~~Y~~A~~l~~~~~--~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKS--RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 35667777766 5667 899999999999999 7766 589999999999999999999999999998876
Q ss_pred cHHHHHHHHhccc
Q 033417 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
.+++++.+|.++.
T Consensus 216 ~~dAl~klg~~~~ 228 (263)
T PRK10803 216 AADAMFKVGVIMQ 228 (263)
T ss_pred hhHHHHHHHHHHH
Confidence 5789999988874
No 104
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=7.7e-08 Score=67.14 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...+...-... .++..+......+...+ +++++...+.++... +. .+.++.++..+|.++.+.|++++|+.++
T Consensus 95 ~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~--~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 95 EALKLAEKAYERD-GDPRYLLSALQLYYRLG--DYDEAEELLEKLEEL-PA-APDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ------------------------H-HHHTT---HHHHHHHHHHHHH--T----T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc-cccchhhHHHHHHHHHh--HHHHHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444443333 45677777778888888 899999999997765 11 3678899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhcccC
Q 033417 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++++++|+++.+...++.++..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLID 192 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999988877653
No 105
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.67 E-value=9.3e-08 Score=45.77 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+.+++.+|.+++.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578889999999999999999999999999875
No 106
>PRK11906 transcriptional regulator; Provisional
Probab=98.64 E-value=2.8e-07 Score=68.08 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
..++....+++..++|.++.++...|......+ +++.|+..+++|+.+ +|+.+.+++..|....-.|+.++|+.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~--~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSG--QAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--chhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 456778899999999999999999999999988 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHH
Q 033417 93 DTEEALKLCPTNVKV 107 (119)
Q Consensus 93 ~~~~al~l~p~~~~a 107 (119)
..+++++++|.-..+
T Consensus 394 ~i~~alrLsP~~~~~ 408 (458)
T PRK11906 394 CIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHhccCchhhHH
Confidence 999999999965443
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=4.4e-07 Score=68.71 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+|.++..+...|..+...| ++++|...+++|+.+ +| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6666788888888888888 899999999999999 88 5789999999999999999999999999999998875
Q ss_pred HH
Q 033417 107 VV 108 (119)
Q Consensus 107 a~ 108 (119)
-+
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 108
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.1e-07 Score=67.79 Aligned_cols=79 Identities=28% Similarity=0.361 Sum_probs=70.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
....+.+.|-.+-+.+ .|++||..|+++|.+ .|.++..|...|.+|..+|+++.|+..|.++|-++|++..+--
T Consensus 454 w~p~~~NLGH~~Rkl~--~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLN--KYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred hhHHHHhHHHHHHHHh--hHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 3455889999999998 799999999999999 9999999999999999999999999999999999999966555
Q ss_pred HHHhc
Q 033417 110 LCSGS 114 (119)
Q Consensus 110 ~~a~~ 114 (119)
-++.+
T Consensus 528 lL~~a 532 (611)
T KOG1173|consen 528 LLKLA 532 (611)
T ss_pred HHHHH
Confidence 44443
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=2e-07 Score=66.68 Aligned_cols=92 Identities=14% Similarity=0.009 Sum_probs=69.1
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.++.....+|.....+...|..+...| ++++|+..+++++.+ .|+++.++..+|.++...|++++|+..+++++
T Consensus 102 ~l~~~~~~~~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 102 VLPLWAPENPDYWYLLGMLAFGLEEAG--QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHhccCcCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 333333456666677777888888888 889999999999988 88888888888889888999999999999888
Q ss_pred HhCCCcH----HHHHHHHhccc
Q 033417 99 KLCPTNV----KVVILCSGSHP 116 (119)
Q Consensus 99 ~l~p~~~----~a~~~~a~~~~ 116 (119)
...|..+ ..++.+|.++.
T Consensus 176 ~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 176 DTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred hccCCCcchhHHHHHHHHHHHH
Confidence 8876432 23445665543
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.58 E-value=4.4e-07 Score=70.97 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.+++..+.+.+..+.+.| .|.+|+..+...+...+. .+...|..+|.|+..+|.+++|+..|.+++.++|++.++
T Consensus 411 ~d~~dL~~d~a~al~~~~--~~~~Al~~l~~i~~~~~~---~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIG--KYKEALRLLSPITNREGY---QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hhhHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCccc---cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 356778899999999999 899999999999887322 347789999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
...++.++.+
T Consensus 486 Ri~Lasl~~~ 495 (895)
T KOG2076|consen 486 RITLASLYQQ 495 (895)
T ss_pred hhhHHHHHHh
Confidence 9999887754
No 111
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=1.1e-06 Score=64.52 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+.+.++++...+|+. ..-.+..++..+ +..+|++.+.++|.. .|.+..++..-+..++..++++.|+.
T Consensus 185 ~~~ai~lle~L~~~~pev---~~~LA~v~l~~~--~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPEV---AVLLARVYLLMN--EEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HHHHHHHHHHHHhcCCcH---HHHHHHHHHhcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677788887777753 334566777766 688999999999988 88889888888999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.+++++++.|+..+.|+.++.+|..
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 112
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.56 E-value=1.8e-08 Score=71.58 Aligned_cols=81 Identities=27% Similarity=0.352 Sum_probs=72.9
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+....-.+...+..| .++.|++.|+.+|.+ +|..+.+|..|+.++++++++..|+.+|..+++++|+..+.|
T Consensus 112 eqa~e~k~~A~eAln~G--~~~~ai~~~t~ai~l----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDG--EFDTAIELFTSAIEL----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY 185 (377)
T ss_pred HHHHHHHHHHHHHhcCc--chhhhhccccccccc----CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence 34556677888889999 899999999999999 999999999999999999999999999999999999998888
Q ss_pred HHHHhcc
Q 033417 109 ILCSGSH 115 (119)
Q Consensus 109 ~~~a~~~ 115 (119)
-.+|.+.
T Consensus 186 kfrg~A~ 192 (377)
T KOG1308|consen 186 KFRGYAE 192 (377)
T ss_pred chhhHHH
Confidence 7776654
No 113
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=1.7e-07 Score=69.07 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=48.3
Q ss_pred CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH---HHHHHhcccC
Q 033417 66 SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV---VILCSGSHPN 117 (119)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~a~~~~~ 117 (119)
.+|+++..++|+|.+++.+|+|++|+..|+++|+++|++..+ ||++|.+|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~ 124 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY 124 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999865 9999998854
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=1.2e-06 Score=54.32 Aligned_cols=81 Identities=21% Similarity=0.128 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHh---cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc---cHHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~ 86 (119)
.+++++.+.+.... .+.-..++...|..+...| ++++|+..+++++.. .|+ +..+....+.++..+|+
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~----~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--RYDEALALLEEALEE----FPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHHCCC
Confidence 34455555555543 2333455556666666666 566666666666555 333 45555555566666666
Q ss_pred HHHHHHHHHHHHH
Q 033417 87 YRRALTDTEEALK 99 (119)
Q Consensus 87 ~~~A~~~~~~al~ 99 (119)
+++|+..+-.++-
T Consensus 91 ~~eAl~~~l~~la 103 (120)
T PF12688_consen 91 PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555443
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=5.9e-07 Score=64.26 Aligned_cols=99 Identities=18% Similarity=0.074 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++...+|++...+.. +..++..| ++..+.....+++.......|.....+..+|.++...|++++|+..++
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLG--DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhc--ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444445555444443 33333333 333333333333322111256666677788899999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhcccC
Q 033417 96 EALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++|+++.++..+|.+++.
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHH
Confidence 9999999999999999988754
No 116
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.55 E-value=3.4e-07 Score=65.76 Aligned_cols=92 Identities=22% Similarity=0.209 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++++.+.+....+|-++..+.+++..|++.. .|..|...++.||.+ +.....+|..|+.+...+|...+|-.+
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~AR~~Lg~~~EAKkD 187 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEEDCEAAIAL----DKLYVKAYSRRMQARESLGNNMEAKKD 187 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHhHHHHHHh----hHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 45777788888889989999999999999987 899999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHH
Q 033417 94 TEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
|+.+|.+.|.+.+.--..
T Consensus 188 ~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 188 CETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHhhCcccHHHHHHH
Confidence 999999999876654443
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=3.4e-07 Score=64.71 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+-+.+.+......+++........+++.+..|.+.+.+|...|++..+. .+..+.+++.+|.|++.+|+|++|...
T Consensus 148 dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 148 DLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455667777777777777777777777777755688899989887666 677888888889999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.++++.+|.++.++.+++.+.
T Consensus 224 L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHH
Confidence 9999999998888888876653
No 118
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.53 E-value=1.1e-06 Score=69.67 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+...+.++...+|..+.........+...| ++++|+..+++++.- .|.........|.++..+|++++|+..|
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666677777777766433335555666666 667777777776643 4555555555566777777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHhccc
Q 033417 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++++.+|+++.+++.++.++.
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHh
Confidence 7777777777777776665554
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=1.5e-06 Score=55.22 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 16 EKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
....++.+...+|+. ..+....|..++..| ++++|+..|.+++...|. .+..+.+..++|.+++..|++++|+.
T Consensus 30 ~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~ 106 (145)
T PF09976_consen 30 AEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG--DYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALA 106 (145)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344567777777666 677888999999999 899999999999997211 12235688889999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++. +.-.+-.+.++..+|.+|..
T Consensus 107 ~L~~-~~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 107 TLQQ-IPDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHh-ccCcchHHHHHHHHHHHHHH
Confidence 9976 33344456777777877753
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=5e-07 Score=71.79 Aligned_cols=100 Identities=15% Similarity=0.014 Sum_probs=83.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---------------CcccHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---------------DSENSVLYANR 77 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~ 77 (119)
.+++....+.....+|+....++..|..++..+ ++.++... .++.+.+.. .+.+..+++.+
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~--~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L 122 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRR--PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL 122 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc--chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 556777788888889999999999999999988 78777766 666652221 23444799999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|.||-++|++++|+..++++++++|+|+.++.++|..|.
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 121
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.6e-07 Score=69.62 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+..-.+.+..++.=++.++.+.|+..|..| ++++|.+.|.+++.- +.....+++|.|..+..+|+.++|+.+|-
T Consensus 475 aqqyad~aln~dryn~~a~~nkgn~~f~ng--d~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 475 AQQYADIALNIDRYNAAALTNKGNIAFANG--DLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred HHHHHHHHhcccccCHHHhhcCCceeeecC--cHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 334455555666667788889999999888 899999999999888 78888888888888888888888888887
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
+.-.+--++.+.++.++.+|
T Consensus 549 klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 76555555677777666655
No 122
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=7.2e-07 Score=68.94 Aligned_cols=87 Identities=20% Similarity=0.115 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHH--HHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAID--CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
..++...+..+..++|++.......|.++.+.| +..-|.. .+..++++ +|.++.+|+.+|.++.++|+.++|
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~----dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRL----DPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccchHHH
Confidence 346778889999999999999999999999999 6666666 99999999 999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcH
Q 033417 91 LTDTEEALKLCPTNV 105 (119)
Q Consensus 91 ~~~~~~al~l~p~~~ 105 (119)
..+|..++++++.+|
T Consensus 774 aecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 774 AECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHhhccCCC
Confidence 999999999998765
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=98.47 E-value=2e-06 Score=63.68 Aligned_cols=100 Identities=8% Similarity=-0.059 Sum_probs=87.4
Q ss_pred CChhhHHHHHHHH---HhcHHHHHHHHHHhHHHHHhc-------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417 12 KTESEKADLDAIA---ALKESAAIELKEKGNEYVKKG-------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~g-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
..+.+...+.++. .++|..+.++.-++.+++..- ..+-.+|.+.-.+|+++ +|.++-++..+|.+.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~Da~a~~~~g~~~ 348 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 3456777889999 999999999999999987651 11456788999999999 999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 82 LLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
...++++.|+..+++++.++|+...+++..|.++
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999988743
No 124
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=9.9e-07 Score=59.85 Aligned_cols=84 Identities=19% Similarity=0.111 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++..+..++++|+.+=..| -+.-|--.+++++.+ .|..+.+++.+|.-+..-|+|+.|.+.|+-++++||.+.-
T Consensus 61 ~eeRA~l~fERGvlYDSlG--L~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 61 DEERAQLLFERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred hHHHHHHHHHhcchhhhhh--HHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 4566778889999888888 788888889999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 033417 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++.++|.+++
T Consensus 135 a~lNRgi~~Y 144 (297)
T COG4785 135 AHLNRGIALY 144 (297)
T ss_pred HHhccceeee
Confidence 9999988754
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=6.3e-07 Score=49.14 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~ 71 (119)
.+++...++.+...+|+++.++...|.+++..| ++++|+..|+++++. .|+++
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~----~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG--RYDEALAYYERALEL----DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCC
Confidence 457889999999999999999999999999999 999999999999999 88764
No 126
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.44 E-value=3.2e-07 Score=44.37 Aligned_cols=33 Identities=36% Similarity=0.689 Sum_probs=30.7
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 55 CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 55 ~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.|+++|++ +|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~----~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL----NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH----CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 37899999 9999999999999999999999986
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.42 E-value=1.7e-06 Score=48.34 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+++.+.++.+..++|+++..+...|.+++..| +|.+|+..++++++. .|+++.+...++.
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~l~~----~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLG--RYEEALEDLERALEL----SPDDPDARALRAM 71 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHh
Confidence 467889999999999999999999999999999 899999999999999 8888887766543
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=5.5e-07 Score=69.31 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=67.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
++.+-+..|...+..+ +|.++..+++.++++ +|.....|+++|.|.+++++++.|..+|..++.++|++..+|.
T Consensus 484 sarA~r~~~~~~~~~~--~fs~~~~hle~sl~~----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 484 SARAQRSLALLILSNK--DFSEADKHLERSLEI----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred hHHHHHhhccccccch--hHHHHHHHHHHHhhc----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence 3444455555566656 899999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHhcccC
Q 033417 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
+++.+|+.
T Consensus 558 Nls~ayi~ 565 (777)
T KOG1128|consen 558 NLSTAYIR 565 (777)
T ss_pred hhhHHHHH
Confidence 88887753
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.40 E-value=1.1e-06 Score=67.00 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
..+.++.+..-.|++.+.+.-.|..+...| +-++|......++.. ++....+|--.|.++..-++|++||.+|+
T Consensus 26 gLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 26 GLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 345677777788999999999999999999 899999999999998 99999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
.|+.++|+|...++-++...
T Consensus 100 nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHH
Confidence 99999999999998877543
No 130
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.38 E-value=3.3e-07 Score=67.65 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+.++....++..++|..+..+-+++..+++.+ +|..|+....++|+. +|....+|+.+|.+.+.++++.+|+.
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e--~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVE--SFGGALHDALKAIEL----DPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeec--hhhhHHHHHHhhhhc----CchhhheeeeccHHHHhHHHHHHHHH
Confidence 346778889999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhc
Q 033417 93 DTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
+++....+.|+.+.+......|
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999887665443
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=6.4e-06 Score=56.87 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++++.++.+..-+|.+-..+..+--..-..| .-.+||+.+...++. -+.+..+|..++.+|+.+|.|++|.-++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--K~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQG--KNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcC--CcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3444444444445554444444444444444 234555555555555 6788899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhccc
Q 033417 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++-++|-++--+.++|.+++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999988888887764
No 132
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=8.1e-07 Score=60.28 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
=+...++...+++|+.+..+.-.|.-+...| +|+.|.+.|...+++ +|..--++.|||..++--|+|.-|..++
T Consensus 83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~--~fdaa~eaFds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc--cchHHHHHhhhHhcc----CCcchHHHhccceeeeecCchHhhHHHH
Confidence 3556788889999999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhCCCcH
Q 033417 95 EEALKLCPTNV 105 (119)
Q Consensus 95 ~~al~l~p~~~ 105 (119)
.+-.+-||++|
T Consensus 157 ~~fYQ~D~~DP 167 (297)
T COG4785 157 LAFYQDDPNDP 167 (297)
T ss_pred HHHHhcCCCCh
Confidence 99999998876
No 133
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=1.2e-05 Score=51.04 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhc---HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC------
Q 033417 16 EKADLDAIAALK---ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN------ 86 (119)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~------ 86 (119)
+++.++.+.... |-...+...+|-.+|+.+ +|.+|+..+++-|++.|. +|.-+-+++.+|.+++....
T Consensus 29 A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~~~~~~~~~~~ 105 (142)
T PF13512_consen 29 AIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--DYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYYEQDEGSLQSF 105 (142)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHHhhhHHhhh
Confidence 444455554443 335677889999999999 999999999999999666 56667899999999999887
Q ss_pred ---------HHHHHHHHHHHHHhCCCcHHH
Q 033417 87 ---------YRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 87 ---------~~~A~~~~~~al~l~p~~~~a 107 (119)
..+|+.+++++++.-|++.-+
T Consensus 106 ~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 106 FRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 899999999999999988654
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.4e-06 Score=66.71 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+-.++.++..|..+...| +|++|..+|.+++.. ++++ ...++.+|+.++..|.++.|+.+|.++++..|++.+
T Consensus 304 ~~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQG--DFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 344555666666666666 666666666666666 5555 455566666666666666666666666666666666
Q ss_pred HHHHHHhcc
Q 033417 107 VVILCSGSH 115 (119)
Q Consensus 107 a~~~~a~~~ 115 (119)
+...+|..|
T Consensus 378 tm~iLG~Ly 386 (1018)
T KOG2002|consen 378 TMKILGCLY 386 (1018)
T ss_pred HHHHHHhHH
Confidence 666666554
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.34 E-value=9.7e-06 Score=61.55 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
..++...++++..++|+.+.++..++.++.... .++...+.....+++.+ +. +|.++.+|.-+|......|+
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~-~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PE-LNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-cc-CcCChHHHHHHHHHHHhcCC
Confidence 456778899999999999999999888776542 00244555556665553 11 56667889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 87 YRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++|...+++++.++| +..+|..+|.++.
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999999999 5889999998764
No 136
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.32 E-value=8e-06 Score=60.14 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=80.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~ 91 (119)
.+.+.+.+.+.....|.....+.-.|..+...| +++.|...+.++.+. .|+.. .+....+.+++..|++++|+
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--DEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 445666777777777776777788888888888 899999999999888 77764 45666788999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..+++.++..|+++.++..++.++..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999998888887653
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.8e-06 Score=60.02 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+++...++|....+-...+..+..+| .+..++..+++++.. .| +..++..+|.++...+.+++|++
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~----~~-D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEG--PTKDIIKLLEKHLII----FP-DVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhh----cc-ccHHHHHHHHHHHHhhhHHHHHH
Confidence 467888999999999999999999999999999 799999999999998 55 55679999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHH
Q 033417 93 DTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~ 111 (119)
.|..+|.++|.+..+.-.+
T Consensus 493 ~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 493 YYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHhcCccchHHHHHH
Confidence 9999999999998776554
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=9.6e-06 Score=56.29 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=59.4
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---VKVV 108 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~ 108 (119)
..+++.+..+++.| +|..|...|..-|..-|. .+-.+.+++.+|.+++.+|+|++|...|..+++-.|++ ++++
T Consensus 142 ~~~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYKSG--DYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33777888888887 788888888888877333 34456777788888888888888888888887766644 5677
Q ss_pred HHHHhcc
Q 033417 109 ILCSGSH 115 (119)
Q Consensus 109 ~~~a~~~ 115 (119)
+.+|.+.
T Consensus 219 lKlg~~~ 225 (262)
T COG1729 219 LKLGVSL 225 (262)
T ss_pred HHHHHHH
Confidence 7777765
No 139
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.30 E-value=1.9e-06 Score=41.14 Aligned_cols=33 Identities=39% Similarity=0.518 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+|+.+|.++..+|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468889999999999999999999999998854
No 140
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.30 E-value=2.9e-06 Score=46.75 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+++...+.++...+|++...+...|.++++.| ++++|...+.+++.. +|+++..+.-++.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~----~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--QYDEAEELLERLLKQ----DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGG----GTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCHHHHHHHHhc
Confidence 457889999999999999999999999999999 999999999999999 8988877766654
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=8.2e-06 Score=51.82 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 13 TESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+++...+..+....|+. ..+...++.+++..| +|++|+..+.. +.- .+..+.++..+|.+++..|++++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~--~~d~Al~~L~~-~~~----~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQG--QYDEALATLQQ-IPD----EAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHh-ccC----cchHHHHHHHHHHHHHHCCCHHH
Confidence 346777777777755332 456778999999999 89999999966 333 57778899999999999999999
Q ss_pred HHHHHHHHH
Q 033417 90 ALTDTEEAL 98 (119)
Q Consensus 90 A~~~~~~al 98 (119)
|+..|+++|
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999875
No 142
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=8.7e-06 Score=59.79 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=64.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++++...++...+.+|+++..+...|..+.+.+ +|.+|.+.|+++++. .|+... +..++.++.++|+.++|..
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~--~~~~A~~~le~al~~----~P~~~~-~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG--EWQEASLAFRAALKQ----RPDAYD-YAWLADALDRLHKPEEAAA 382 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 455677777777888888888888888888887 788888888888888 777655 4457888888888888888
Q ss_pred HHHHHHHhC
Q 033417 93 DTEEALKLC 101 (119)
Q Consensus 93 ~~~~al~l~ 101 (119)
+|++++.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 888887653
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=6.8e-06 Score=60.38 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+++..+.+....+|.++..+...+..+.+.+ +++.|+...++++.+ .|.+...|+.++.||..+|++++|+..
T Consensus 217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKK--KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46778888888889999999999999999988 899999999999999 999999999999999999999999987
Q ss_pred HHHHH
Q 033417 94 TEEAL 98 (119)
Q Consensus 94 ~~~al 98 (119)
.+-+-
T Consensus 291 LNs~P 295 (395)
T PF09295_consen 291 LNSCP 295 (395)
T ss_pred HhcCc
Confidence 77543
No 144
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.23 E-value=6.7e-06 Score=54.06 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----------NYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----------~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
-|+.|...++..... +|.++..+.+=|.+++.+. -+++|++-+++||.|+|+...+++.+|.+|+.
T Consensus 6 ~FE~ark~aea~y~~----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAK----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 378888999999999 9999999999999988763 35788999999999999999999999999853
No 145
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.23 E-value=3.6e-06 Score=42.83 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
..+...|..+...| ++++|+..|+++++. +|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G--~~~~A~~~~~~~l~~----~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG--QPDEAERLLRRALAL----DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence 56788999999999 999999999999999 9999999998875
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=2.2e-05 Score=54.27 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcHHHHH---HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-----
Q 033417 15 SEKADLDAIAALKESAAI---ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----- 86 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----- 86 (119)
++.+.++.+....|.... +....|..+++.+ +|++|+..+++.+...|. +|..+.+++.+|.++..++.
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~~~~~~~ 126 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALDDSALQG 126 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcchhhhhh
Confidence 456677777777765443 4588999999999 999999999999999666 66778899999999766541
Q ss_pred -------------HHHHHHHHHHHHHhCCCcH
Q 033417 87 -------------YRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 87 -------------~~~A~~~~~~al~l~p~~~ 105 (119)
..+|+..++..++.-|++.
T Consensus 127 ~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 127 FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred ccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 3578999999999999874
No 147
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.21 E-value=1.5e-05 Score=63.40 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+++...-.|.....+...|..+...| +|++|+..|+++++. +|+++.++..++..+...++.++|+.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--dyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEK--RWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 345556666655333444555555566666666 677777777777777 66666666666666666677777777
Q ss_pred HHHHHHHhCCCc
Q 033417 93 DTEEALKLCPTN 104 (119)
Q Consensus 93 ~~~~al~l~p~~ 104 (119)
.+++++..+|++
T Consensus 158 ~l~~l~~~dp~~ 169 (822)
T PRK14574 158 QATELAERDPTV 169 (822)
T ss_pred HHHHhcccCcch
Confidence 766666666653
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=59.88 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|....+.+..+...+..| .++.|...++..+.. .|+|+.++..++.+++..++..+|++.+++++.++|..+-.
T Consensus 303 ~~~~aa~YG~A~~~~~~~--~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG--QYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred ccchHHHHHHHHHHHHhc--ccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 567788899999999999 899999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
.+.+|++|++
T Consensus 377 ~~~~a~all~ 386 (484)
T COG4783 377 QLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 149
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.20 E-value=1.7e-05 Score=58.47 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhcHHHH--HHHHHHhHHHHHhchHhHHHHHHHHH--HHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 14 ESEKADLDAIAALKESAA--IELKEKGNEYVKKGKKHYYDAIDCYT--RAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+..+.+++..+.+|+++ ..+...|..+++.| +|++|.+.|+ ++++. .|+... +..+|.++.++|+.++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~----~p~~~~-~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG--EFIEAADAFKNVAACKE----QLDAND-LAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhc----CCCHHH-HHHHHHHHHHcCCHHH
Confidence 344555556666666666 56666666666666 6666666666 45555 554444 3366666666666666
Q ss_pred HHHHHHHHHH
Q 033417 90 ALTDTEEALK 99 (119)
Q Consensus 90 A~~~~~~al~ 99 (119)
|...+++++.
T Consensus 389 A~~~~~~~l~ 398 (409)
T TIGR00540 389 AAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 150
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.3e-06 Score=55.69 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.++..+.++..++|.-+..+.+.+.++++.. +|+.+.....+++++ .|+.+..++.+|.+.+....|.+||..+
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~--~~~~v~~dcrralql----~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLK--HWEPVEEDCRRALQL----DPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhh--hhhhhhhhHHHHHhc----ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4567888999999999999999999999987 999999999999999 9999999999999999999999999999
Q ss_pred HHHHHh
Q 033417 95 EEALKL 100 (119)
Q Consensus 95 ~~al~l 100 (119)
.++..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 999765
No 151
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.19 E-value=3.3e-05 Score=48.72 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+++.+.+..-+-|+.+.+|.+++..+--.| +.++|+..+.+++++.......--.+|..||..|..+|+-+.|..+
T Consensus 60 d~AlE~F~qal~l~P~raSayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 60 DGALELFGQALCLAPERASAYNNRAQALRLQG--DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD 137 (175)
T ss_pred HHHHHHHHHHHHhcccchHhhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence 45677788888888999999999999999888 8999999999999993222223345789999999999999999999
Q ss_pred HHHHHHhCCCcH
Q 033417 94 TEEALKLCPTNV 105 (119)
Q Consensus 94 ~~~al~l~p~~~ 105 (119)
|..+-++...+.
T Consensus 138 Fe~AA~LGS~FA 149 (175)
T KOG4555|consen 138 FEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHhCCHHH
Confidence 999988865443
No 152
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.19 E-value=4.9e-05 Score=52.50 Aligned_cols=85 Identities=24% Similarity=0.210 Sum_probs=72.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a 107 (119)
+..|++.|...++.| +|++|++.|+.....-|- .|....+....+.++++.+++++|+...++=+.+.|+++ -+
T Consensus 34 ~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 34 ASELYNEGLTELQKG--NYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 788999999999999 999999999999887333 445567888899999999999999999999999998775 56
Q ss_pred HHHHHhcccCC
Q 033417 108 VILCSGSHPNQ 118 (119)
Q Consensus 108 ~~~~a~~~~~~ 118 (119)
+|.+|.+++..
T Consensus 111 ~YlkgLs~~~~ 121 (254)
T COG4105 111 YYLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHHhcc
Confidence 77778776544
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.17 E-value=8.5e-05 Score=46.04 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=67.2
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT---NVKVV 108 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~ 108 (119)
..+++.|..+-..| +.++|+..|++++..... .+....++..+|.++..+|++++|+..+++++.-.|+ +....
T Consensus 2 ~~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLG--REEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 46788999999999 899999999999997322 3445679999999999999999999999999998887 66665
Q ss_pred HHHHhcc
Q 033417 109 ILCSGSH 115 (119)
Q Consensus 109 ~~~a~~~ 115 (119)
..++.++
T Consensus 79 ~f~Al~L 85 (120)
T PF12688_consen 79 VFLALAL 85 (120)
T ss_pred HHHHHHH
Confidence 5555544
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.17 E-value=2.8e-05 Score=59.06 Aligned_cols=80 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
+++.+.-...++...| ++++|+..+...... -.+.....-.+|.+++++|++++|...|+..|+.+|+|..-|.
T Consensus 3 ~SE~lLY~~~il~e~g--~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 3 HSELLLYKNSILEEAG--DYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4566677778888888 899999999988777 7888899999999999999999999999999999999999888
Q ss_pred HHHhcc
Q 033417 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
.+..+.
T Consensus 77 ~L~~~~ 82 (517)
T PF12569_consen 77 GLEEAL 82 (517)
T ss_pred HHHHHH
Confidence 887765
No 155
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.16 E-value=7.1e-06 Score=39.16 Aligned_cols=34 Identities=35% Similarity=0.637 Sum_probs=29.9
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN 70 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~ 70 (119)
+..|..+|.+++..| ++++|+..|+++|++ +|++
T Consensus 1 a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG--DYEEALEYYQRALEL----DPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTH
T ss_pred CHHHHHHHHHHHHhC--CchHHHHHHHHHHHH----CcCC
Confidence 467999999999999 999999999999999 7753
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=1e-05 Score=62.54 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=82.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+++.++++....++|-....|+..|.++.+.+ +++.|...|.+.+.+ +|++...|+|++.+|.++|+-.+|..
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle--k~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHh--hhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 346778899999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHH
Q 033417 93 DTEEALKLCPTNVKVV 108 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~ 108 (119)
.++++++-+-.+++.|
T Consensus 575 ~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIW 590 (777)
T ss_pred HHHHHhhcCCCCCeee
Confidence 9999999876666554
No 157
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=1.1e-05 Score=57.76 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=58.8
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
+.+.......| .++.+.-+..+|.+.. ....|+..|.+.++. -|.+++.+...+.++..++++++|++.|+.+
T Consensus 244 kqlqssL~q~~-~~dTfllLskvY~rid--QP~~AL~~~~~gld~----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 244 KQLQSSLTQFP-HPDTFLLLSKVYQRID--QPERALLVIGEGLDS----FPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHHhhcCC-chhHHHHHHHHHHHhc--cHHHHHHHHhhhhhc----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 34444444333 4666666677777766 677777777777777 7777777777777777888888888888888
Q ss_pred HHhCCCcHHHH
Q 033417 98 LKLCPTNVKVV 108 (119)
Q Consensus 98 l~l~p~~~~a~ 108 (119)
++++|.|+++.
T Consensus 317 lk~~~~nvEai 327 (478)
T KOG1129|consen 317 LKLHPINVEAI 327 (478)
T ss_pred HhcCCccceee
Confidence 87777776654
No 158
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=2.8e-05 Score=55.49 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHhcH-----HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 15 SEKADLDAIAALKE-----SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 15 ~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
++++...++.++.+ ..+.-+.+.+..+..+. +++.|...+.+|+.- +|.++.+-..+|.+.+..|+|+.
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHH
Confidence 44444444444432 35666777777777766 788888888888887 78887777778888888888888
Q ss_pred HHHHHHHHHHhCCCc-HHHHHHHHhcc
Q 033417 90 ALTDTEEALKLCPTN-VKVVILCSGSH 115 (119)
Q Consensus 90 A~~~~~~al~l~p~~-~~a~~~~a~~~ 115 (119)
|+..++.+++-||++ +.+.-.+..||
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 888888888888776 34444444443
No 159
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.14 E-value=4.7e-05 Score=55.96 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL-YANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
...+.-.+....+.| +++.|...|.++.+. .|+.... ....+..+...|++++|+..+++.++.+|+++.++.
T Consensus 118 ~l~~llaA~aA~~~g--~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ 191 (398)
T PRK10747 118 VVNYLLAAEAAQQRG--DEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR 191 (398)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 344444455558888 899999999999988 7776533 334488889999999999999999999999999998
Q ss_pred HHHhcccC
Q 033417 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
.++.+|..
T Consensus 192 ll~~~~~~ 199 (398)
T PRK10747 192 LAEQAYIR 199 (398)
T ss_pred HHHHHHHH
Confidence 88877653
No 160
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.13 E-value=1.8e-05 Score=41.98 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.++.+|..++++|+|.+|..+++.+|+++|+|.++..-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3567789999999999999999999999999998886544
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.4e-05 Score=53.67 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHH-hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVK-KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+...+..+..+.|++++.+...|..++. .|..+-.++...+++++.+ +|.+..+.+.+|..++..|+|.+|+..
T Consensus 174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----D~~~iral~lLA~~afe~g~~~~A~~~ 249 (287)
T COG4235 174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----DPANIRALSLLAFAAFEQGDYAEAAAA 249 (287)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 46678999999999999999999988853 3333668889999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 033417 94 TEEALKLCPTN 104 (119)
Q Consensus 94 ~~~al~l~p~~ 104 (119)
++..+++.|.+
T Consensus 250 Wq~lL~~lp~~ 260 (287)
T COG4235 250 WQMLLDLLPAD 260 (287)
T ss_pred HHHHHhcCCCC
Confidence 99999988754
No 162
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.10 E-value=1.2e-05 Score=38.14 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN 70 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~ 70 (119)
+..+..+|..++..| +|++|+..|++++.+ +|++
T Consensus 1 a~~~~~lg~~~~~~~--~~~~A~~~~~~al~l----~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG--NYEEAIEYFEKALEL----DPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTS
T ss_pred CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CcCC
Confidence 467899999999999 999999999999999 7753
No 163
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.09 E-value=5.2e-05 Score=57.36 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHHH
Q 033417 15 SEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVNL 82 (119)
Q Consensus 15 ~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~ 82 (119)
++...+..+..+ .|.-+..+...|..+...+ .|.+|+..|.+|+.+.. ..+|.-+.++.++|..|.
T Consensus 217 ~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 217 KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 444555555555 7777777888999999999 89999999999998843 347788899999999999
Q ss_pred HhcCHHHHHHHHHHHHHh
Q 033417 83 LLGNYRRALTDTEEALKL 100 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l 100 (119)
+.|++.+|..+|++|++|
T Consensus 295 ~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEI 312 (508)
T ss_pred ccCChHHHHHHHHHHHHH
Confidence 999999999999999987
No 164
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=9e-06 Score=58.28 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=52.0
Q ss_pred HHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 21 DAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....+.+|.+.++..-.|.-+|-.+ +.+-|++.|++.+.+ .-.++.++.|+|.|.+--++++-++..+.+++..
T Consensus 314 k~vlk~~~~nvEaiAcia~~yfY~~--~PE~AlryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 314 KLVLKLHPINVEAIACIAVGYFYDN--NPEMALRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHhcCCccceeeeeeeeccccCC--ChHHHHHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 3333444444444444444444444 445555555555555 5556677777777777777777777777777764
Q ss_pred --CCC-cHHHHHHHHhcc
Q 033417 101 --CPT-NVKVVILCSGSH 115 (119)
Q Consensus 101 --~p~-~~~a~~~~a~~~ 115 (119)
+|+ -.+.||++|.+.
T Consensus 388 at~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVA 405 (478)
T ss_pred ccCcchhhhhhhccceeE
Confidence 233 357777777654
No 165
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9.1e-05 Score=51.29 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
....+.+...++...| +|-++++..+..|.. .|.+..+|+.||.++....+..+|..++..+|+++|.-..+-
T Consensus 229 ~tpLllNy~QC~L~~~--e~yevleh~seiL~~----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKE--EYYEVLEHCSEILRH----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hhHHHHhHHHHHhhHH--HHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 3445778889999988 999999999999999 999999999999999999999999999999999999655443
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.02 E-value=4.5e-05 Score=61.01 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=64.5
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+....+.. +|++|++...++++. +|++..++..+|.++..+|. .++|-+.|..+.+++|++.-||-.++..|.
T Consensus 9 Ak~al~nk--~YeealEqskkvLk~----dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye 82 (1238)
T KOG1127|consen 9 AKDALRNK--EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE 82 (1238)
T ss_pred HHHHHhhc--cHHHHHHHHHHHHhc----CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 34445544 899999999999999 99999999999999999998 999999999999999999999999888764
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.01 E-value=5.8e-05 Score=53.46 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH-HHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY-RRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~A~ 91 (119)
..++.-.++.+....+..+..+...+.+.+..| +|++|...+.+++.. +|.++.++.|+..|...+|+. +.+-
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~--~~~eAe~~L~~al~~----~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG--HYEEAEELLEEALEK----DPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 456667888887777888899999999999999 899999999999999 999999999999999999998 5555
Q ss_pred HHHHHHHHhCCCcHHH
Q 033417 92 TDTEEALKLCPTNVKV 107 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a 107 (119)
....+....+|+++..
T Consensus 257 ~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHhCCCChHH
Confidence 6777777899988754
No 168
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.6e-05 Score=56.13 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+|..|+.+-.++|.. +|.+..++...|..+..+|+.++|+-.|+.+..+.|...+.|-.+-.+|
T Consensus 315 ~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 315 KFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 444445544555554 4555555555555555555555555555555555555444444444443
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.99 E-value=0.00013 Score=48.95 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHhcH---HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC----
Q 033417 14 ESEKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---- 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---- 86 (119)
.+++..++.+....| -...+....|..+++.| +|..|+..+++-+..-|. .|..+.+++.+|.+++.+..
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHHHhCccchh
Confidence 356677777777644 46778899999999999 999999999999999555 55667899999999877643
Q ss_pred -------HHHHHHHHHHHHHhCCCcHH
Q 033417 87 -------YRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 87 -------~~~A~~~~~~al~l~p~~~~ 106 (119)
..+|+..++..++.-|++..
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred cccChHHHHHHHHHHHHHHHHCcCchH
Confidence 45899999999999998753
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.99 E-value=6.8e-05 Score=56.96 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
.++-++..+-..| ++++|+...+++|+. .|+.+.+|+..|.++-+.|++.+|....+.+..+|+.+-..-..
T Consensus 196 ~~~~lAqhyd~~g--~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLG--DYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4577788888888 999999999999999 99999999999999999999999999999999999866544333
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.98 E-value=6.2e-06 Score=46.71 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC---CcHHHHHHHHhcccC
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKL----CP---TNVKVVILCSGSHPN 117 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~p---~~~~a~~~~a~~~~~ 117 (119)
|+.+.++.++|.++..+|+|++|+..|++++++ .+ .-..+++++|.++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999976 22 235677888887643
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=3.1e-05 Score=58.46 Aligned_cols=84 Identities=26% Similarity=0.252 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---GNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p~ 103 (119)
=|..++.++..|+..|-.+ .+..|+..|.+++.. -|....+|.+++.++++. |..-.|+.+|-.+++++|.
T Consensus 370 L~e~ie~~~~egnd~ly~~--~~~~~i~~~s~a~q~----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYES--IVSGAISHYSRAIQY----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred chHHHHHHHhhccchhhhH--HHHHHHHHHHHHhhh----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 3667889999999999888 799999999999999 999999999999999874 5778899999999999999
Q ss_pred cHHHHHHHHhccc
Q 033417 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
..++|++++.++.
T Consensus 444 ~~kah~~la~aL~ 456 (758)
T KOG1310|consen 444 IQKAHFRLARALN 456 (758)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 173
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.96 E-value=6.9e-05 Score=56.71 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
....|.........|..++..| +|+.|+..+.+++++... ..|.-.......|..|..++++.+|+..|++++.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g--~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQG--RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3457888889999999999999 899999999999987221 2566667777799999999999999999999998
Q ss_pred h--------CCCcHHHHHHHHhcccC
Q 033417 100 L--------CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 100 l--------~p~~~~a~~~~a~~~~~ 117 (119)
+ +|.-.-++.++|.+|..
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 7 46667888888888754
No 174
>PRK10941 hypothetical protein; Provisional
Probab=97.94 E-value=0.0002 Score=50.22 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=67.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.-+.+.=..+.+.+ +++.|+...+..+.+ .|+++.-+..||.+|.++|.+..|+.+++.-++..|+.+.+..-+
T Consensus 182 Rml~nLK~~~~~~~--~~~~AL~~~e~ll~l----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 182 KLLDTLKAALMEEK--QMELALRASEALLQF----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34556667778888 899999999999999 999999999999999999999999999999999999998887665
Q ss_pred Hh
Q 033417 112 SG 113 (119)
Q Consensus 112 a~ 113 (119)
.+
T Consensus 256 ~q 257 (269)
T PRK10941 256 AQ 257 (269)
T ss_pred HH
Confidence 44
No 175
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00015 Score=54.21 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++.+....+...+.+-.+++++.|..+-..| +.++|+.+|-+.-.+ --.++..++.++.+|..+.+..+||+.+
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~--~ldeald~f~klh~i----l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALG--NLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhc--CHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4555566666666667777777777777777 777777777665444 4456777777777777777777777777
Q ss_pred HHHHHhCCCcHHHHHHHHhcc
Q 033417 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
-++..+-|+++..+-.+|..|
T Consensus 582 ~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHh
Confidence 777777777777777777655
No 176
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.94 E-value=7.3e-05 Score=57.35 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++..........++....-|.-.|..+-... +|++||.+|+.|+.+ .|+|..++..++..+.++++++-...
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 445556666666778887778888887776554 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.-.+.++++|.+-..|+..|.++
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999998888887764
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.00021 Score=49.69 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+.+++=+|..+|..| +|+.|...|..++.--|+ .|.-++.++.+|.|+..+|+.++|-..++++++--|+...+-.
T Consensus 177 ~~nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 177 TPNAYYWLGESLYAQG--DYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred cchhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5666777999999999 999999999999987565 7788899999999999999999999999999999999887766
Q ss_pred HHH
Q 033417 110 LCS 112 (119)
Q Consensus 110 ~~a 112 (119)
...
T Consensus 254 Ak~ 256 (262)
T COG1729 254 AKV 256 (262)
T ss_pred HHH
Confidence 543
No 178
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.91 E-value=3.1e-05 Score=35.16 Aligned_cols=33 Identities=39% Similarity=0.466 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.++.++|.++..+|++++|+..++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467788899999999999999999998888753
No 179
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.91 E-value=2.2e-06 Score=61.23 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=77.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+++.+..+..++|..+..+..++.++.+.+ .+..|++.|..++++ +|+...-|-.++.+...+|+|++|..
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~--kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK--KPNAAIRDCDFAIEI----NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc--CCchhhhhhhhhhcc----CcccccccchhhHHHHHhhchHHHHH
Confidence 556777788888899999999999999999998 699999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhC
Q 033417 93 DTEEALKLC 101 (119)
Q Consensus 93 ~~~~al~l~ 101 (119)
++..+++++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 999999885
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.90 E-value=5.1e-05 Score=60.71 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
++..+......+|++...|...|..|...| .|..|+..|+++..+ +|.+.-..+..|....-+|+|.+|+..+.
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~L----rP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESG--RYSHALKVFTKASLL----RPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhc----CcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344455555555555555555555555555 555555555555555 55555555555555555555665555555
Q ss_pred HHHHhCCCcHHHHHHHHhc
Q 033417 96 EALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~ 114 (119)
+.+........+...+|.+
T Consensus 655 ~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHH
Confidence 5555444444444444433
No 181
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.85 E-value=5.3e-05 Score=35.56 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888888888888888888887764
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.85 E-value=0.00078 Score=42.52 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=57.8
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
........+...+..+...| ++++|+..+.+++.. +|.+..+|..+-.++...|++.+|+..|++..+
T Consensus 57 l~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 57 LRELYLDALERLAEALLEAG--DYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34456677888888889988 999999999999999 999999999999999999999999999998743
No 183
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00016 Score=51.79 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.+..|.+++-+.+-.| +|..|+...++++.+ +|....++++-|.|++.+.++.+|+..|+..++++.+...+
T Consensus 118 navLY~NRAAa~~~l~--NyRs~l~Dcs~al~~----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLG--NYRSALNDCSAALKL----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHhhHHHHHHHHH--HHHHHHHHHHHHHhc----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4556778888888888 999999999999999 99999999999999999999999999999999887655443
No 184
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.0003 Score=50.39 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++++..+.++...+|+.+.+-..+|.+....| +|.+|++.++.+++. +|+.. .+.-.+..||..+|+.++.+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g--~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKG--DYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc--chHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 456788899999999999999999999999999 999999999999999 88664 56777889999999999999
Q ss_pred HHHHHHHHhCCC
Q 033417 92 TDTEEALKLCPT 103 (119)
Q Consensus 92 ~~~~~al~l~p~ 103 (119)
....++.+..+.
T Consensus 270 ~fL~~~~~~~~g 281 (389)
T COG2956 270 NFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHccCC
Confidence 999999987664
No 185
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.77 E-value=2.7e-05 Score=37.86 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.++|.++..+|+|++|+..|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566677777777777777777775543
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0011 Score=46.25 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...+.+...++.+....-...+++-+-.|++.+.+|.-.|+.--+. .|..+.+....+.|++.+|+|++|....+
T Consensus 156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 44455555556665444434444444545545678888888887665 56777888888889999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHh
Q 033417 96 EALKLCPTNVKVVILCSG 113 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~ 113 (119)
.+|.-++.+++++-++-.
T Consensus 232 eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHhccCCCHHHHHHHHH
Confidence 999888888888776543
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.71 E-value=0.00035 Score=52.60 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=77.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+.+.++......|+.+.-+...|..+...| +.++|++.|++++.....-.+-...+++.+|.|++.+.+|++|..
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g--~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKG--NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 456778899999999999999999999999999 999999999998864111133446788999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHH
Q 033417 93 DTEEALKLCPTNVKVVI 109 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~ 109 (119)
++.+.++.+.. .++.|
T Consensus 327 ~f~~L~~~s~W-Ska~Y 342 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFY 342 (468)
T ss_pred HHHHHHhcccc-HHHHH
Confidence 99999997654 44443
No 188
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.68 E-value=0.00061 Score=54.75 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
..+.+-......+.+-.+++.+|.+|-+.| ++++|...|+++|++ +|.++.+.++.|..+... +.++|+..+.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g--~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLN--ENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 344455555556777789999999999999 899999999999999 999999999999999999 9999999999
Q ss_pred HHHHh
Q 033417 96 EALKL 100 (119)
Q Consensus 96 ~al~l 100 (119)
+|+..
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 99875
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.66 E-value=0.00043 Score=53.69 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.++|+++++++|+. -|+...+|..+|+++..+++.+.|...|...++..|..+..|..+
T Consensus 666 ~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred hHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 344444444444444 444444444444444444444444444444444444444444333
No 190
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.60 E-value=0.00048 Score=49.31 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..-...+....+.| .-++|...|..|+.+ .|+++.++...|......++.-+|-.+|-++|.+.|.|.+++-+
T Consensus 116 A~~Al~~A~~~~~~G--k~ekA~~lfeHAlal----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 116 AILALKAAGRSRKDG--KLEKAMTLFEHALAL----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHHHHHhcc--chHHHHHHHHHHHhc----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 444455566667778 689999999999999 99999999999999988899999999999999999999999988
Q ss_pred HHhc
Q 033417 111 CSGS 114 (119)
Q Consensus 111 ~a~~ 114 (119)
++..
T Consensus 190 R~RT 193 (472)
T KOG3824|consen 190 RART 193 (472)
T ss_pred hhcc
Confidence 7653
No 191
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.56 E-value=0.00092 Score=48.78 Aligned_cols=80 Identities=20% Similarity=0.115 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
..-++.+++-.+.+|+++..+..+|..+++++ .|.+|-..++.+++. .|+ ..-+..+|.++.++|+..+|-+.
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~--~w~kA~~~leaAl~~----~~s-~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK--LWGKASEALEAALKL----RPS-ASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--HHHHHHHHHHHHHhc----CCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence 34567788888889999999999999999998 999999999999999 654 44578899999999999999999
Q ss_pred HHHHHHh
Q 033417 94 TEEALKL 100 (119)
Q Consensus 94 ~~~al~l 100 (119)
.++++.+
T Consensus 384 r~e~L~~ 390 (400)
T COG3071 384 RREALLL 390 (400)
T ss_pred HHHHHHH
Confidence 9998853
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.00054 Score=48.17 Aligned_cols=84 Identities=24% Similarity=0.248 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHh------cHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccC-CC-cccHHHHHHHHHHHHHhc
Q 033417 15 SEKADLDAIAAL------KESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVL-SD-SENSVLYANRAHVNLLLG 85 (119)
Q Consensus 15 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~a~~~~~l~ 85 (119)
+++..+.++..+ ...-+..+...|..+... | ++++|+..|.+|+++-.. .. .....++.+.|.++.++|
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 445555555543 133466788888888887 7 899999999999987221 11 233567888999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 033417 86 NYRRALTDTEEALKL 100 (119)
Q Consensus 86 ~~~~A~~~~~~al~l 100 (119)
+|++|+..|+++...
T Consensus 170 ~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKK 184 (282)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998875
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.00031 Score=33.19 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|.++...| ++++|+..|++++++
T Consensus 1 a~~~~~lg~~y~~~~--~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLG--DYEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh
Confidence 357889999999999 999999999999999
No 194
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.45 E-value=0.002 Score=50.22 Aligned_cols=93 Identities=14% Similarity=-0.015 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++...+..|+....|..+|.++-+.+ +.+.|-..|.+++.. +|....+|..++..-.+.|....|..
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~--~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQME--NIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH--HHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 457788889999999999999999999999988 899999999999999 88888899999998888899999999
Q ss_pred HHHHHHHhCCCcHHHHHHH
Q 033417 93 DTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~ 111 (119)
.++++.--+|.+...|+..
T Consensus 741 ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLES 759 (913)
T ss_pred HHHHHHhcCCCcchhHHHH
Confidence 9999988899888877654
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.44 E-value=0.0016 Score=51.75 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=80.0
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.++....+++.+.+|+..-+..-.|..+++.| .+++|..+++..-.. .+++...+-.+-.||..+|++++|...
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g--k~~ea~~~Le~~~~~----~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLG--KGDEALKLLEALYGL----KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc--CchhHHHHHhhhccC----CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45667888888999999999999999999999 799999777665555 566777778889999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|+++++.+|. .+..+.+-.+|
T Consensus 100 Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHH
Confidence 9999999998 76666665554
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.44 E-value=0.00014 Score=34.92 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHH
Q 033417 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAI 53 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~ 53 (119)
+.++..++|+++.++.++|..+...| ++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g--~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG--DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc--CHHhhc
Confidence 46788899999999999999999999 899886
No 197
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.43 E-value=0.00032 Score=48.14 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=53.6
Q ss_pred HHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+.+ |.+.|.+.|.+++.+ .|+....|+..|....+.|+++.|...|+++++++|.+
T Consensus 5 ~~~~~--D~~aaaely~qal~l----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESG--DAEAAAELYNQALEL----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccC--ChHHHHHHHHHHhhc----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566 899999999999999 99999999999999999999999999999999999965
No 198
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.39 E-value=0.00045 Score=33.42 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
++.++|..+.+.| +|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g--~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQG--DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 4778999999999 999999999997766
No 199
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.31 E-value=0.0022 Score=37.82 Aligned_cols=59 Identities=27% Similarity=0.416 Sum_probs=46.8
Q ss_pred HHHhchHhHHHHHHHHHHHHhcccCCCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 41 YVKKGKKHYYDAIDCYTRAINQNVLSDS-----ENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
..+.| +|..|++.+.+..+....... ....+..++|.++...|++++|+..+++++++-
T Consensus 8 ~~~~~--dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSG--DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcC--CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34566 899999999988877433222 235677889999999999999999999999874
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00071 Score=47.49 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=59.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.....+.+..+.... +|..|.+.|++.+.. +|.++.+-++.|.|++-+|+..+|+.....+++..|..
T Consensus 252 ~~V~~n~a~i~lg~n--n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQN--NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhhhhheeccc--chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344556666666665 899999999999999 99999999999999999999999999999999999964
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.00017 Score=53.36 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL----CPT 103 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~p~ 103 (119)
...++-++|+.|+..| +|++||..-+.-+.+... +....-.++.|+|+|+.-+|+++.|+++|+..+.+ .-.
T Consensus 194 qGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r 271 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR 271 (639)
T ss_pred hcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence 3455678899999999 999999988877776111 01123458899999999999999999999986544 332
Q ss_pred --cHHHHHHHHhcc
Q 033417 104 --NVKVVILCSGSH 115 (119)
Q Consensus 104 --~~~a~~~~a~~~ 115 (119)
..+..|.+|..|
T Consensus 272 ~vEAQscYSLgNty 285 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTY 285 (639)
T ss_pred hHHHHHHHHhhhHH
Confidence 244556777665
No 202
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.27 E-value=0.011 Score=37.46 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred HHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 30 AAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.....++.+.++.+.. +.+..+-+..++..++.. .| ..-.+.+.++..++++|+|+.++.+++..++.+|+|.++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~---~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA---HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc---CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4566677788877553 124567788888888621 33 334667778999999999999999999999999999988
Q ss_pred HHH
Q 033417 108 VIL 110 (119)
Q Consensus 108 ~~~ 110 (119)
.--
T Consensus 108 ~~L 110 (149)
T KOG3364|consen 108 LEL 110 (149)
T ss_pred HHH
Confidence 644
No 203
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.26 E-value=0.0021 Score=49.49 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhcHHHH-HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 15 SEKADLDAIAALKESAA-IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.++..+..+....|... ..+.++++.+.+.| ....|-..+.+++.+ ....+..++..|..++.+.+...|++.
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--~~~da~~~l~q~l~~----~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG--LHLDATKLLLQALAI----NSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHhh--hhccHHHHHHHHHhh----cccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34555666555566543 34789999999999 899999999999999 888899999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHH
Q 033417 94 TEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
++.|++++|+++.....+
T Consensus 699 ~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHhcCCCChhhHHHH
Confidence 999999999998766544
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.00034 Score=52.64 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=70.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh-cc--------cCC-----CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN-QN--------VLS-----DSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~--------~~~-----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
....|.++|.++|+.| -|..++-+|.+|+. .+ |+. ....-.+.+|.|..|+..|++-.|.+++.
T Consensus 282 ~cif~NNlGcIh~~~~--~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~ 359 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLG--CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ 359 (696)
T ss_pred hheeecCcceEeeehh--hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence 3556789999999999 79999999999995 21 111 22445788999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
++...--.+|..|+++|.|.+
T Consensus 360 ~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 360 KAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHhcCcHHHHHHHHHHH
Confidence 999998899999999998764
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.25 E-value=0.009 Score=40.12 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
......+...+.|. ..--+.+|+.+...| ++.+|...|.+++.=. -..++.....++.+.+.++++..|..-.+
T Consensus 75 ~~Rea~~~~~~ApT-vqnr~rLa~al~elG--r~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 75 HLREATEELAIAPT-VQNRYRLANALAELG--RYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHhhchh-HHHHHHHHHHHHHhh--hhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33444444455564 455668899999999 8999999999998641 34667778888888888888888888888
Q ss_pred HHHHhCCC--cHHHHHHHHhcc
Q 033417 96 EALKLCPT--NVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~--~~~a~~~~a~~~ 115 (119)
.+.+.+|. .+..++..|.++
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHH
Confidence 88888774 355555555443
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.19 E-value=0.016 Score=36.82 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
....+...+..+...+ ++..++..+.+++.. .+. ....+..++.++...+.+.+|+..+..++...|.....+
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 166 LAEALLALGALLEALG--RYEEALELLEKALKL----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred hHHHHHHhhhHHHHhc--CHHHHHHHHHHHHhh----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 4444445555555555 566666666666666 555 456666666666666666666666666666666544444
Q ss_pred HHHH
Q 033417 109 ILCS 112 (119)
Q Consensus 109 ~~~a 112 (119)
...+
T Consensus 240 ~~~~ 243 (291)
T COG0457 240 YNLA 243 (291)
T ss_pred hhHH
Confidence 4433
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.18 E-value=0.011 Score=37.16 Aligned_cols=81 Identities=21% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhccc-----CCC-------------cccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNV-----LSD-------------SENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-----~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...|......+ +...++..+.+++.+-. ... .....+...++..+...|++++|+..++
T Consensus 9 ~~~~a~~~~~~~--~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 9 LVREARAAARAG--DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556666666 78888888999887721 101 1123355566777888999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++.++|.+..+|..+-.+|.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999988877664
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.00057 Score=50.65 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=63.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc--CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C-
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC----P- 102 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p- 102 (119)
.+..|.++|+.||-.+ +|++|+.+-+.-|-+.. -+.-..+..--|+|+.+-.+|.|++|+.+|.+-|.+. .
T Consensus 54 LSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr 131 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR 131 (639)
T ss_pred HHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH
Confidence 4667889999999998 99999987443332211 1123345556788999999999999999999876652 2
Q ss_pred -CcHHHHHHHHhcccC
Q 033417 103 -TNVKVVILCSGSHPN 117 (119)
Q Consensus 103 -~~~~a~~~~a~~~~~ 117 (119)
....++|++|.+|-.
T Consensus 132 v~e~RAlYNlgnvYha 147 (639)
T KOG1130|consen 132 VLESRALYNLGNVYHA 147 (639)
T ss_pred HhhhHHHhhhhhhhhh
Confidence 346899999998853
No 209
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.16 E-value=0.0018 Score=30.07 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE 69 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~ 69 (119)
++++..|.++.+.| ++++|+..|++.+.. .|+
T Consensus 1 ~a~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLG--DYDEAIEYFQRLIKR----YPD 32 (33)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHH----STT
T ss_pred CHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CcC
Confidence 46789999999999 999999999999998 665
No 210
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.13 E-value=0.005 Score=46.48 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------C---------Ccc--cHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----------S---------DSE--NSV 72 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------~---------~~~--~~~ 72 (119)
.+-++...++..++|+.+.+|.-++..... ...+|...|+++++.... . .+. ..-
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEAS----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccccc----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 345567788888999999998877665443 246677777776654110 0 011 234
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHhcccC
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKLCPT--NVKVVILCSGSHPN 117 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~~ 117 (119)
+...+|+|.-++|+.+||+..++..++..|. +...++++..+++.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 5567889999999999999999999998874 56677887776643
No 211
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.015 Score=42.68 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
-.+..|++. .|++||+.|.+.+.. +|+...+-.++|.||+++.-|+-+.+..+--++-.|+++-+...++-.+
T Consensus 157 LAsvhYmR~---HYQeAIdvYkrvL~d----n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 157 LASVHYMRM---HYQEAIDVYKRVLQD----NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL 229 (557)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHhc----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344445554 599999999999999 9999999999999999999999998888888888999998887776555
Q ss_pred cC
Q 033417 116 PN 117 (119)
Q Consensus 116 ~~ 117 (119)
+.
T Consensus 230 fR 231 (557)
T KOG3785|consen 230 FR 231 (557)
T ss_pred hh
Confidence 43
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00084 Score=47.96 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=59.8
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+....+.|...|+.| +|++|+..|+.+++. ..-++.+-++++.|+++.|++..|+....+.++
T Consensus 142 n~Ad~~in~gCllykeg--qyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEG--QYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred Cccchhccchheeeccc--cHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 46788899999999999 899999999999999 888888899999999999999999998888765
No 213
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.003 Score=48.44 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc--------------------------ccCCCc
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ--------------------------NVLSDS 68 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~--------------------------~~~~~~ 68 (119)
++.....++..+.|++..+++....++.+.+ .|++|+.....-... ....++
T Consensus 30 ~a~k~~~Kil~~~pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~ 107 (652)
T KOG2376|consen 30 EAVKTANKILSIVPDDEDAIRCKVVALIQLD--KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR 107 (652)
T ss_pred HHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc
Confidence 4445556666666666666666666666655 466665332221110 000033
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 69 ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+..+.--+|.+.+++|+|++|+..|+..++-+.+..+
T Consensus 108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 33444455566666666666666666666554444333
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.003 Score=45.23 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+|..||+++.--.+. .|.+-..+..+|.||+...+|.+|..+|.+...+.|...+
T Consensus 25 ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q 79 (459)
T KOG4340|consen 25 RYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ 79 (459)
T ss_pred hHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 345555554444444 4444444445555555555555555555555555554433
No 215
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.0013 Score=51.66 Aligned_cols=85 Identities=29% Similarity=0.351 Sum_probs=76.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--LGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.+..+...|+..|..+ ++..|.-.|..++.+.|+.++..+..+.+++.|++. +|+|..++..|..++...|...++
T Consensus 52 ra~~~~~E~n~~~~K~--d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKR--DYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHhhhhHHhhhh--hhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 3667788999999988 999999999999999888888899999999999886 578999999999999999999999
Q ss_pred HHHHHhccc
Q 033417 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++.++.+|.
T Consensus 130 Ll~r~~~y~ 138 (748)
T KOG4151|consen 130 LLKRARKYE 138 (748)
T ss_pred HhhhhhHHH
Confidence 999887763
No 216
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0071 Score=47.07 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=66.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
-..+++.+...|+.. +|..+++.|...+...|.+ +...+.+..+++.||+.+.+.+.|.+++.+|=+.+|.++-..
T Consensus 354 H~iLWn~A~~~F~~~--~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKME--KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 345778889999988 8999999999999886554 334467889999999999999999999999999999887655
Q ss_pred HHH
Q 033417 109 ILC 111 (119)
Q Consensus 109 ~~~ 111 (119)
+..
T Consensus 432 ~~~ 434 (872)
T KOG4814|consen 432 LLM 434 (872)
T ss_pred HHH
Confidence 443
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0085 Score=43.57 Aligned_cols=99 Identities=11% Similarity=-0.018 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++-...+++..-.|++..++...-..+|..| +...-...+++.+..=..+.|-..-++-..+.++...|.|++|....
T Consensus 121 ~a~~~wdklL~d~PtDlla~kfsh~a~fy~G--~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 121 EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA 198 (491)
T ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHhcc--chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence 3445678888889999999999889999988 77777777777765411113333444455677888999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhcc
Q 033417 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|.+..+...++.++
T Consensus 199 ~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 199 DRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HhhccCCCcchHHHHHHHHHH
Confidence 999999999988887777654
No 218
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.97 E-value=0.003 Score=30.87 Aligned_cols=30 Identities=33% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..++.++|.++..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999998876
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.97 E-value=0.016 Score=36.86 Aligned_cols=71 Identities=30% Similarity=0.307 Sum_probs=40.1
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCC
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH-VNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p 102 (119)
..+.....+...|......+ ++..++..+..++.. .+.........+. ++...|++.+|+..+.+++...|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALG--KYEEALELLEKALAL----DPDPDLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred hccchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcC----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44555556666666666655 566666666666665 4443333333344 56666666666666666655554
No 220
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.96 E-value=0.021 Score=33.51 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc--HHHHHHHHHHHHHhcCHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
....+.+....+|++..+.+..+..++..| ++++|++.+-..+.. ++.. ..+.-.+-.++-.+|.-+.....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--~~e~Al~~Ll~~v~~----dr~~~~~~ar~~ll~~f~~lg~~~plv~~ 80 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAG--DYEEALDQLLELVRR----DRDYEDDAARKRLLDIFELLGPGDPLVSE 80 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---HHHHHHHHHHHHCC-----TTCCCCHHHHHHHHHHHHH-TT-HHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CccccccHHHHHHHHHHHHcCCCChHHHH
Confidence 446677777889999999999999999988 899999999888887 4433 33444444455556665444444
Q ss_pred HHH
Q 033417 94 TEE 96 (119)
Q Consensus 94 ~~~ 96 (119)
|++
T Consensus 81 ~RR 83 (90)
T PF14561_consen 81 YRR 83 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 221
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.95 E-value=0.012 Score=41.45 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCc-ccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDS-ENSVLYANRAHVNLLL-GNYRRALTDTEEALKL 100 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~-~~~~~~~~~a~~~~~l-~~~~~A~~~~~~al~l 100 (119)
..+...+..+...++.+ ++++|+..|++++.+-.. +.+ .-+.++.++|.++... |++++|+..|++|+++
T Consensus 72 ~~Aa~~~~~Aa~~~k~~--~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 72 FEAAKAYEEAANCYKKG--DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33333334444445555 799999999999877222 122 3357888899999888 9999999999999986
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.89 E-value=0.0027 Score=28.21 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+...|..++..+ +++.|+..+++++++
T Consensus 2 ~~~~~~a~~~~~~~--~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLG--DYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHh--hHHHHHHHHHHHHcc
Confidence 45778999999998 899999999999998
No 223
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.88 E-value=0.0096 Score=38.66 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++.....++.++-+.|..+..-.-.|..+...| +|.+|++.++....- .|..+.+-..++.|+..+|+..= ..
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~--~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~~W-r~ 98 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRG--DWDDALRLLRELEER----APGFPYAKALLALCLYALGDPSW-RR 98 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC--CHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCChHH-HH
Confidence 455667888999999999999999999999999 999999999998887 78888888888899888887432 22
Q ss_pred HHHHHHHhCC
Q 033417 93 DTEEALKLCP 102 (119)
Q Consensus 93 ~~~~al~l~p 102 (119)
+..++++-.|
T Consensus 99 ~A~evle~~~ 108 (160)
T PF09613_consen 99 YADEVLESGA 108 (160)
T ss_pred HHHHHHhcCC
Confidence 2455565544
No 224
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.88 E-value=0.024 Score=32.48 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+....+.|..++... +.++|+...+++++..++ .++...++-.+..++...|+|.+++...-+=+++
T Consensus 5 ~ak~~ie~GlkLY~~~--~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQN--ETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999887 899999999999998333 2333344444556788899999999987665543
No 225
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.86 E-value=0.0072 Score=45.00 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=61.0
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----Cc-----cc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DS-----EN-----SVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~-----~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
-...|..+++.+ .|..|+..|..+|+++.++ +| ++ .-+--.+..||+++++.+-|+...-++|-
T Consensus 179 AL~das~~yrqk--~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 179 ALKDASSCYRQK--KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 344556667766 7888888888888886542 11 11 12334567899999999999999999999
Q ss_pred hCCCcHHHHHHHHhcc
Q 033417 100 LCPTNVKVVILCSGSH 115 (119)
Q Consensus 100 l~p~~~~a~~~~a~~~ 115 (119)
++|.+...|++.|.|+
T Consensus 257 lnP~~frnHLrqAavf 272 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVF 272 (569)
T ss_pred cCcchhhHHHHHHHHH
Confidence 9999999999988765
No 226
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.85 E-value=0.007 Score=35.55 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+++.+.. +|++..+.+.+|..++..|++++|+..+-.+++.+|++
T Consensus 7 ~~~al~~~~a~----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAA----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 45668888898 99999999999999999999999999999999998866
No 227
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.012 Score=41.27 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=66.9
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH-HH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE-EA 97 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~-~a 97 (119)
.++.....-|..+..+..++.+++..| +|++|...+..+|.. ++.+++.+.|+-.+-..+|...++.+.+- +.
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~~--~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQLG--RYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHhc--CHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444444434446778889999999999 999999999999999 99999999999999999999988887554 55
Q ss_pred HHhCCCcHH
Q 033417 98 LKLCPTNVK 106 (119)
Q Consensus 98 l~l~p~~~~ 106 (119)
...+|.++.
T Consensus 269 k~~~p~h~~ 277 (299)
T KOG3081|consen 269 KLSHPEHPF 277 (299)
T ss_pred HhcCCcchH
Confidence 567887754
No 228
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.021 Score=40.03 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=62.5
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
.+.=..+.+.+ .++.|...-.+.+.+ +|+++.-..-+|.+|.++|.+.-|++++..-++..|+.+.+-..+++
T Consensus 185 ~~lk~~~~~e~--~~~~al~~~~r~l~l----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 185 RNLKAALLREL--QWELALRVAERLLDL----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHhh--chHHHHHHHHHHHhh----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34444555665 799999999999999 99999889999999999999999999999999999998877665543
No 229
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0043 Score=45.38 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=46.2
Q ss_pred HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.|-++|+.| +|++|+..|+.+... +.-+..++.++|.|++-+|.|.+|-+...++
T Consensus 63 ia~C~fhLg--dY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 63 IAHCYFHLG--DYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHhhc--cHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 678889998 899999999988876 6667788889999999999999988766654
No 230
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.65 E-value=0.056 Score=35.12 Aligned_cols=83 Identities=16% Similarity=-0.000 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.......+.+........+ +.+++...+...-.+ .|..+.+-..-|..++..|+|.+|+..++.+..-.|..+-
T Consensus 6 ~~~iv~gLie~~~~al~~~--~~~D~e~lL~ALrvL----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLG--DPDDAEALLDALRVL----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred cHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 4456777888889999988 899999999988888 8999999999999999999999999999998888887775
Q ss_pred HHHHHHhcc
Q 033417 107 VVILCSGSH 115 (119)
Q Consensus 107 a~~~~a~~~ 115 (119)
+-=-++.|+
T Consensus 80 ~kALlA~CL 88 (160)
T PF09613_consen 80 AKALLALCL 88 (160)
T ss_pred HHHHHHHHH
Confidence 444444444
No 231
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.034 Score=42.91 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=48.2
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCC-
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD-TEEALKLCPT- 103 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~-~~~al~l~p~- 103 (119)
+++.+...+.-.|..+++.| +|++|+..|+..++- +.++...-. ++.+... ..+... ..+++.+.|+
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~--~ydealdiY~~L~kn----~~dd~d~~~-r~nl~a~----~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLE--RYDEALDIYQHLAKN----NSDDQDEER-RANLLAV----AAALQVQLLQSVPEVPED 173 (652)
T ss_pred ccccchHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCchHHHHH-HHHHHHH----HHhhhHHHHHhccCCCcc
Confidence 34444556667888889988 899999999988776 555444322 2222211 111111 3444555564
Q ss_pred cHHHHHHHHhccc
Q 033417 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
..+.+|+.|.++.
T Consensus 174 syel~yN~Ac~~i 186 (652)
T KOG2376|consen 174 SYELLYNTACILI 186 (652)
T ss_pred hHHHHHHHHHHHH
Confidence 5778888877654
No 232
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.54 E-value=0.0069 Score=29.81 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+|..+|.+-+..++|.+|+.+|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999874
No 233
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.43 E-value=0.053 Score=41.23 Aligned_cols=86 Identities=12% Similarity=0.002 Sum_probs=67.4
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEE 96 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~ 96 (119)
..+..+...-+.+...|.+-..-.-+.+ .+.+--..|.+++.. +|+++++|...|.-.+..+. .+.|...+.+
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~--~~~~v~ki~~~~l~~----Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKK--TYGEVKKIFAAMLAK----HPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3444444444556666666655555554 688888999999999 99999999999988887766 9999999999
Q ss_pred HHHhCCCcHHHHH
Q 033417 97 ALKLCPTNVKVVI 109 (119)
Q Consensus 97 al~l~p~~~~a~~ 109 (119)
+|+.+|++++.|.
T Consensus 166 gLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 166 GLRFNPDSPKLWK 178 (568)
T ss_pred HhhcCCCChHHHH
Confidence 9999999987764
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.28 E-value=0.026 Score=39.78 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+...+.++....+.....|...|..-+..++ +.+.|...|+.+++. -|.+..++..-...+..+++.+.+...
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-d~~~A~~Ife~glk~----f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-DPKRARKIFERGLKK----FPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 345566666665455567778888888777543 777788888888888 788888888777888888888888888
Q ss_pred HHHHHHhCCCc
Q 033417 94 TEEALKLCPTN 104 (119)
Q Consensus 94 ~~~al~l~p~~ 104 (119)
|++++..-|..
T Consensus 93 fer~i~~l~~~ 103 (280)
T PF05843_consen 93 FERAISSLPKE 103 (280)
T ss_dssp HHHHCCTSSCH
T ss_pred HHHHHHhcCch
Confidence 88888765543
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.03 Score=39.60 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=71.9
Q ss_pred HHHHHHHhc-HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 19 DLDAIAALK-ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.+.++...+ |..+.....+|...++-| |-+.|...++..-+-... .-...-..+.+.+.+++..++|.+|...+.
T Consensus 199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 199 AYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 344444445 667777888899999999 888888777754322111 023455678888899999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++..||.++.+-.+.|.|++
T Consensus 277 ~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 277 EILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred hccccCCCchhhhchHHHHHH
Confidence 999999999998888887754
No 236
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.19 E-value=0.017 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+.+.|..+...| ++++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g--~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQG--RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hcchhhHHHHHHHHH
Confidence 467889999999999 999999999999987
No 237
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.19 E-value=0.049 Score=33.25 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=54.0
Q ss_pred HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCC
Q 033417 37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLG-----------NYRRALTDTEEALKLCP 102 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p 102 (119)
.+..+|.+| ++-+|++..+..+.. ++++. .++..-|.++..+. ..--+++.+.++..+.|
T Consensus 2 ~A~~~~~rG--nhiKAL~iied~i~~----h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARG--NHIKALEIIEDLISR----HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHcc--CHHHHHHHHHHHHHH----ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 456778888 899999999999887 54444 56666677776543 24568888999999999
Q ss_pred CcHHHHHHHHh
Q 033417 103 TNVKVVILCSG 113 (119)
Q Consensus 103 ~~~~a~~~~a~ 113 (119)
.....++.+|.
T Consensus 76 ~~A~~L~~la~ 86 (111)
T PF04781_consen 76 DSAHSLFELAS 86 (111)
T ss_pred hHHHHHHHHHH
Confidence 88888888875
No 238
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.16 E-value=0.0094 Score=42.90 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN-RAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+.++..|.+-+.-..+.+ .|.+--..|.+++.. +|.++++|.. .+.-+...++.+.+...+.++|+++|+++.
T Consensus 104 f~D~k~w~~y~~Y~~k~k--~y~~~~nI~~~~l~k----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKK--MYGEMKNIFAECLTK----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred CCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 456666777776666766 899999999999999 9999999987 445677889999999999999999999988
Q ss_pred HHHH
Q 033417 107 VVIL 110 (119)
Q Consensus 107 a~~~ 110 (119)
.|+.
T Consensus 178 iw~e 181 (435)
T COG5191 178 IWIE 181 (435)
T ss_pred HHHH
Confidence 7753
No 239
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.16 E-value=0.094 Score=34.58 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.+...++.++|..+.+.| +++.|+..|.++.+.+.. .......+++.-.+.+..++|..+.....++-.+
T Consensus 32 kesir~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIG--DLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667788999999999999 999999999999887322 1223456666777777889999999988887654
No 240
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.07 E-value=0.11 Score=31.73 Aligned_cols=83 Identities=12% Similarity=0.252 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhch---------HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGK---------KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
++++.++.....++++. ......|..+++... --.-.+++.|.+++.+ .|..+..++.+|.-+-
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDSAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhHHHHHHHHHHHhh
Confidence 46667777766665554 556677777765442 0235678999999999 9999999999888877
Q ss_pred HhcCHHHHHHHHHHHHHhC
Q 033417 83 LLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~ 101 (119)
....|++++.-++++|.+.
T Consensus 90 s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 90 SVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hHHHHHHHHHHHHHHhccc
Confidence 7778999999999998853
No 241
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.05 E-value=0.085 Score=27.85 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
+.++..+..+++.| +|+.|.+..+.+|++ .|++..+..-...+
T Consensus 2 d~lY~lAig~ykl~--~Y~~A~~~~~~lL~~----eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG--EYEKARRYCDALLEI----EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHH----TTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCcHHHHHHHHHH
Confidence 34677888899999 999999999999999 89888776655444
No 242
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.90 E-value=0.41 Score=34.48 Aligned_cols=91 Identities=11% Similarity=-0.040 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhHHHHHhc----------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC
Q 033417 17 KADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
...+.+....+|.+...|.+....--..- +.-.+.-+..|++||+. +|.+..++..+=.+..+...
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~----np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH----NPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC
Confidence 45677778889999999887765433221 00235667889999999 99999888888788888889
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 87 YRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++...-+++++..+|.+...|...
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 9999999999999999988777553
No 243
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.86 E-value=0.044 Score=35.24 Aligned_cols=69 Identities=17% Similarity=0.073 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
.+.....++.+.-+.|+.+..-.-.|..+...| +|.+|++.++...+- .+..+..-...+.|+..+|+.
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg--~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARG--NYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcC--CHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCCh
Confidence 345556788888889999998889999999988 899999999988777 666676667778888888774
No 244
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.69 E-value=0.071 Score=25.81 Aligned_cols=32 Identities=19% Similarity=-0.038 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHHhCCCc
Q 033417 73 LYANRAHVNLLLGNYRRALTD--TEEALKLCPTN 104 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~--~~~al~l~p~~ 104 (119)
.++..|..+...|++++|+.. |+-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456667777888888888888 44777777653
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.61 E-value=0.31 Score=34.05 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhc---HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-------
Q 033417 15 SEKADLDAIAALK---ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL------- 84 (119)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l------- 84 (119)
++...++++...+ |-.-.+....+-.+++.+ +|++|+...++-+.+-|. +|+-.-+++-+|.+++..
T Consensus 52 ~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i~~~~rD 128 (254)
T COG4105 52 EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--EYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQIDDVTRD 128 (254)
T ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccCCccccC
Confidence 4555666666554 345677889999999999 999999999999999666 666677888899997763
Q ss_pred -cCHHHHHHHHHHHHHhCCCcH
Q 033417 85 -GNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 85 -~~~~~A~~~~~~al~l~p~~~ 105 (119)
..-.+|+..++.+++--|++.
T Consensus 129 q~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 129 QSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCc
Confidence 335788899999999988763
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.42 Score=34.15 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
|...+.-...+......| ++.+|...+..++.. .|++..+...++.|++..|+.++|...+..
T Consensus 131 ~~~~e~~~~~~~~~~~~e--~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 131 PAEEEEALAEAKELIEAE--DFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ChHHHHHHHHhhhhhhcc--chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 334556677888888888 899999999999999 899999999999999999999777765544
No 247
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.59 E-value=0.038 Score=43.52 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=51.9
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+......+.+.| ++++|.+.+++. .. .| +...|..+..++...|+++.|...+++.++++|++...|..+
T Consensus 463 ~~y~~li~~l~r~G--~~~eA~~~~~~~-~~----~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 463 MHYACMIELLGREG--LLDEAYAMIRRA-PF----KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred cchHhHHHHHHhcC--CHHHHHHHHHHC-CC----CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 44555666666666 677777766542 22 33 344577777777778888888888888888888877777766
Q ss_pred Hhccc
Q 033417 112 SGSHP 116 (119)
Q Consensus 112 a~~~~ 116 (119)
+.+|.
T Consensus 535 ~~~y~ 539 (697)
T PLN03081 535 LNLYN 539 (697)
T ss_pred HHHHH
Confidence 66553
No 248
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.58 E-value=0.27 Score=31.69 Aligned_cols=82 Identities=16% Similarity=-0.038 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+.....+.+........+ +++++...+...--+ .|..+.+...-|..++..|+|.+|+..++.+.+-.|..+-
T Consensus 6 s~~iv~gLi~~~~~aL~~~--d~~D~e~lLdALrvL----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSA--DPYDAQAMLDALRVL----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred cHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence 3445566666777777777 899999988888788 8999999999999999999999999999998887766554
Q ss_pred HHHHHHhc
Q 033417 107 VVILCSGS 114 (119)
Q Consensus 107 a~~~~a~~ 114 (119)
+-=-++.|
T Consensus 80 ~kAL~A~C 87 (153)
T TIGR02561 80 GKALLALC 87 (153)
T ss_pred HHHHHHHH
Confidence 43333443
No 249
>PLN03077 Protein ECB2; Provisional
Probab=95.51 E-value=0.12 Score=41.77 Aligned_cols=77 Identities=9% Similarity=0.058 Sum_probs=51.9
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...+......+.+.| ++++|.+.+++. .. .|+ +..|..+-.++...|+.+.+....+++++++|++...|..
T Consensus 625 ~~~y~~lv~~l~r~G--~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 625 LKHYACVVDLLGRAG--KLTEAYNFINKM-PI----TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 456666777777777 677777776653 33 443 3444444445556677777777788888888888888887
Q ss_pred HHhcc
Q 033417 111 CSGSH 115 (119)
Q Consensus 111 ~a~~~ 115 (119)
++.+|
T Consensus 697 l~n~y 701 (857)
T PLN03077 697 LCNLY 701 (857)
T ss_pred HHHHH
Confidence 77665
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.37 E-value=0.095 Score=37.35 Aligned_cols=85 Identities=15% Similarity=-0.019 Sum_probs=63.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-C-----------------------------CcccHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-S-----------------------------DSENSVLYANRAH 79 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~-----------------------------~~~~~~~~~~~a~ 79 (119)
.+....+.+..+...| +..+|+..+...+..... . ....+.++..+|.
T Consensus 183 ~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~ 260 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAK 260 (352)
T ss_pred CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 4677788888999988 789999988888771000 0 1122445666666
Q ss_pred HHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 80 VNLLL------GNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 80 ~~~~l------~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
..... +..++++..|+++++++|.+.++|+..|..+.
T Consensus 261 w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 261 WLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 66666 77888999999999999999999999987654
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.19 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 70 NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
.+..--.+|.+++..|+-.+|+..|.++++.+++.+
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 344456688999999999999999999998875543
No 252
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.27 E-value=0.39 Score=30.00 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=44.8
Q ss_pred HhHHHHHhchHhHHHHHHHHHHHHhcccCCC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--------SENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|...+..| .|++|...+.++++...+-. --++-+|..++-++..+|+|++++....++|.
T Consensus 15 ~ae~ql~~g--~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 15 DAERQLQDG--AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHT---HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhh--hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344556667 89999999999998743321 23456778888899999999999999988885
No 253
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.26 E-value=0.56 Score=31.91 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=54.6
Q ss_pred HHHHHHHHHhHHHHHhchHh-------HHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKH-------YYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~-------~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+..+...++.+-..| + ...|+..|.++++.... ..-+...+.+.+|....++|++++|+..+.+++.
T Consensus 116 ~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34566666777766655 4 35566666666665322 1224467778899999999999999999999998
Q ss_pred hCCCcH-HHHHHHH
Q 033417 100 LCPTNV-KVVILCS 112 (119)
Q Consensus 100 l~p~~~-~a~~~~a 112 (119)
..-.+. .....+|
T Consensus 194 ~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 194 SKKASKEPKLKDMA 207 (214)
T ss_pred CCCCCCcHHHHHHH
Confidence 543332 3444444
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.23 E-value=0.41 Score=29.94 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---CCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---SDSEN----SVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
++-.+.-+...+...| +|++++..-..+|....+ .+.+. ..+.+++|.++-.+|+.++|+..|+++-+.
T Consensus 54 DA~chA~Ls~A~~~Lg--ry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLG--RYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444555667778888 899999888888755221 13333 345678999999999999999999998763
No 255
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.22 E-value=0.028 Score=40.53 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
.++++..++.+.++.|++++.+.+.|...-... +.-+|-.+|.+|+.+ .|.+..++.||+..
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~--~iv~ADq~Y~~ALti----sP~nseALvnR~RT 193 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHN--EIVEADQCYVKALTI----SPGNSEALVNRART 193 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh--hhHhhhhhhheeeee----CCCchHHHhhhhcc
Confidence 567888999999999999999999999887765 899999999999999 99999999998764
No 256
>PRK10941 hypothetical protein; Provisional
Probab=95.20 E-value=0.11 Score=36.59 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
.+.+....+.+..+.|+++..+.++|..+.+.| .+..|...++.-|+. +|+++.+-.-+..+
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~--c~~~A~~DL~~fl~~----~P~dp~a~~ik~ql 258 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD--CEHVALSDLSYFVEQ----CPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh----CCCchhHHHHHHHH
Confidence 456778888999999999999999999999999 899999999999999 78887766554443
No 257
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.18 E-value=0.48 Score=35.06 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=54.8
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
...+.-.+...-+.| |++.|-.++.++-+. .+ +.-.....++...+..|++..|.....++++..|.++.+..
T Consensus 118 ~l~~l~aA~AA~qrg--d~~~an~yL~eaae~----~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr 191 (400)
T COG3071 118 VLAYLLAAEAAQQRG--DEDRANRYLAEAAEL----AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR 191 (400)
T ss_pred HHHHHHHHHHHHhcc--cHHHHHHHHHHHhcc----CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence 444445555555555 667776666666655 22 22345566777788888888999888888888998888877
Q ss_pred HHHhccc
Q 033417 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
-..++|.
T Consensus 192 La~r~y~ 198 (400)
T COG3071 192 LALRAYI 198 (400)
T ss_pred HHHHHHH
Confidence 7666664
No 258
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.18 E-value=0.13 Score=34.77 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++.....|..|.+. |.++++..|-+++++.+..+.-++.++..++.++.++|+++.|-
T Consensus 140 t~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466677777777764 58999999999998866555667888888999999999988774
No 259
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.13 E-value=0.19 Score=38.76 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++..+.+.....|.....|.+.+.++++++ +++.-.|++....|+++ +|....+++.++.++..++++.+|+++.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl----n~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL----NPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----ChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 344555555666777778888888888754 12456788889999999 9999999999999999999999999987
Q ss_pred HHHHHhCCCc
Q 033417 95 EEALKLCPTN 104 (119)
Q Consensus 95 ~~al~l~p~~ 104 (119)
..+....|.+
T Consensus 469 ~alq~~~Ptd 478 (758)
T KOG1310|consen 469 WALQMSFPTD 478 (758)
T ss_pred HHHhhcCchh
Confidence 7776677733
No 260
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.08 E-value=0.27 Score=36.08 Aligned_cols=86 Identities=20% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc--------------cC--------CCcccH---HHH
Q 033417 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN--------------VL--------SDSENS---VLY 74 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------------~~--------~~~~~~---~~~ 74 (119)
+-.+...+|=+...+.+.+.++...| ++..|.+..++||=.. +. ..++|- .+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~g--d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQG--DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 34445668889999999999999999 9999999999987220 00 123333 344
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALKLCPT-NVKV 107 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a 107 (119)
+.......+.|-+..|++.|+-.+.+||. ++-+
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 55566777889999999999999999998 5543
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.07 E-value=0.6 Score=33.15 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
......++..++..+...| +++.+++.+++.+.. +|-+-.+|..+=..|++.|+...|+..|++.-+
T Consensus 149 ~e~~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 149 EELFIKALTKLAEALIACG--RADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556778888999999988 899999999999999 999999999999999999999999999998765
No 262
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.05 E-value=0.54 Score=39.27 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...+......+.+.| ++++|...|.+..+.. -+.+...|..+...+.+.|++++|+..+++..+
T Consensus 579 ~vTynaLI~ay~k~G--~ldeA~elf~~M~e~g---i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 579 HITVGALMKACANAG--QVDRAKEVYQMIHEYN---IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555555666666 6666666666655541 123445555555566666666666666665544
No 263
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.65 Score=32.91 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH-HH
Q 033417 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR-RA 90 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~A 90 (119)
.++.++.....+..++|.+-..|.-+-.++-..+. +..+-++.+++.++- +|.+..+|-.|-.+...+|++. .-
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-dL~~El~~l~eI~e~----npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-DLNKELEYLDEIIED----NPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHhcCcccch
Confidence 35556666666666666666666655555554443 455556666666655 5555555555555555555544 45
Q ss_pred HHHHHHHHHhCCCcHHHH
Q 033417 91 LTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~ 108 (119)
+..++.++..+..|.-+|
T Consensus 133 Lef~~~~l~~DaKNYHaW 150 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAW 150 (318)
T ss_pred HHHHHHHHhccccchhhh
Confidence 555555555555444444
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.90 E-value=0.22 Score=37.64 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..-..+-|.-+|..| +|.++.-.-....++ .| .+.+|.-+|.|.+...+|.+|-.++...
T Consensus 462 ian~LaDAEyLysqg--ey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQG--EYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344455667778888 999999999999999 88 8999999999999999999999987763
No 265
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.78 E-value=0.62 Score=38.91 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK--LCPTNVKVVI 109 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~a~~ 109 (119)
..+......+.+.| ++++|...+.+.++.. .+.+...|..+..+|.+.|++++|+..|++..+ +.| +...|.
T Consensus 650 ~TynsLI~a~~k~G--~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN 723 (1060)
T PLN03218 650 VFFSALVDVAGHAG--DLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMN 723 (1060)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 34444445555555 5555555555554431 123445566666666677777777777666544 334 344555
Q ss_pred HHHhcc
Q 033417 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
.+...|
T Consensus 724 ~LI~gy 729 (1060)
T PLN03218 724 ALITAL 729 (1060)
T ss_pred HHHHHH
Confidence 554443
No 266
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.74 E-value=0.16 Score=35.18 Aligned_cols=54 Identities=19% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
|.++|.+|+.+ .|.....|+.+|.+....|+.-+|+=+|-+++-..-.++.|.-
T Consensus 1 A~~~Y~~A~~l----~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~ 54 (278)
T PF10373_consen 1 AERYYRKAIRL----LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARE 54 (278)
T ss_dssp HHHHHHHHHHH-----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHH
T ss_pred CHHHHHHHHHh----CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHH
Confidence 34555555555 5555555555555555555555555555555544333333333
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.1 Score=32.04 Aligned_cols=86 Identities=13% Similarity=-0.008 Sum_probs=66.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHH---------------HHhc------ccC------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTR---------------AINQ------NVL------ 65 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~---------------al~~------~~~------ 65 (119)
..++.+.++.+....|+.+.+....+.++...| +.+.|...+.. -|++ .|.
T Consensus 150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~ 227 (304)
T COG3118 150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAG--DVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR 227 (304)
T ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC--ChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 345566788888889999999999999999999 78777665544 1211 111
Q ss_pred ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+|++..+-+.+|..+...|++++|++.+-..++.
T Consensus 228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999999988776665
No 268
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=1.1 Score=34.49 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+.-+...|..-|.=-...+ ++..|-+.+++||.- +..+.++|..-+.+-++.+..+.|...+++|+.+=|.-.+
T Consensus 69 nR~~~~~WikYaqwEesq~--e~~RARSv~ERALdv----d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQK--EIQRARSVFERALDV----DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhc----ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 4444555655555555555 899999999999999 8899999999999999999999999999999999998877
Q ss_pred HHHH
Q 033417 107 VVIL 110 (119)
Q Consensus 107 a~~~ 110 (119)
.||.
T Consensus 143 lWyK 146 (677)
T KOG1915|consen 143 LWYK 146 (677)
T ss_pred HHHH
Confidence 7775
No 269
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.53 E-value=0.072 Score=23.58 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.+++++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677777777777777776654
No 270
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.52 E-value=0.72 Score=37.29 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=49.9
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+...|..++..| ++++|...+.+++.+.... .+....++..+|.++...|++++|...+.+++.+
T Consensus 531 ~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 531 LWSLLQQSEILFAQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 345567788888888 8999999998888763221 1222344667788888889999999999988775
No 271
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.42 E-value=0.19 Score=39.69 Aligned_cols=65 Identities=8% Similarity=-0.155 Sum_probs=57.2
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
++..|......+...| +++.|...+++.+.+ .|++...|..++.+|.+.|++++|...+++..+.
T Consensus 493 ~~~~~~~Ll~a~~~~g--~~~~a~~~~~~l~~~----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 493 TVNMWAALLTACRIHK--NLELGRLAAEKLYGM----GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CHHHHHHHHHHHHHcC--CcHHHHHHHHHHhCC----CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3556888888888888 899999999999999 8988889999999999999999999999886543
No 272
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=1.1 Score=33.38 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc----------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
+++..+.-..+...+|+....|.-+=.+.-... ..-+++-+.....+|.. +|+...+|..|..++.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~----npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV----NPKSYGAWHHRKWVLQ 120 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh----CchhHHHHHHHHHHHH
Confidence 445566666677777877777664444433221 00234556666777777 8889999999988888
Q ss_pred HhcC--HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 83 LLGN--YRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.+. +..-+..|.++++.||.|-.+|.-+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 7664 6888888999999999887666433
No 273
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.04 E-value=0.76 Score=37.16 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=51.9
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+...|..+...| ++++|...+.+++.......+ .....+.++|.+++..|++++|...+++++.+
T Consensus 491 ~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 491 IVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667788888888 899999999999876322111 12346677889999999999999999998886
No 274
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.04 E-value=0.2 Score=37.27 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcc-----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQN-----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+...+.-.| ||..|+..++. |++. .++.+-..+.++..|.||+.+++|.+|+..+..+|-
T Consensus 127 gLlRvh~LLG--DY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLG--DYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhcc--CHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667 88888877644 2221 122445567899999999999999999999999774
No 275
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.00 E-value=0.12 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.+..+|.+.+..+ +|++|+..|.++|++
T Consensus 2 dv~~~Lgeisle~e--~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENE--NFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 45667888888888 899999999999987
No 276
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.53 Score=33.34 Aligned_cols=91 Identities=15% Similarity=0.082 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHH-HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYY-DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++-++.+...+|++-+.|..+-.+.-..| ++. .-+......+.. +..+..+|..|--|....+.|+.-+.+
T Consensus 96 ~El~~l~eI~e~npKNYQvWHHRr~ive~l~--d~s~rELef~~~~l~~----DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 96 KELEYLDEIIEDNPKNYQVWHHRRVIVELLG--DPSFRELEFTKLMLDD----DAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHHHhc--CcccchHHHHHHHHhc----cccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 5667788888889999999999998888888 787 788888899998 899999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHH
Q 033417 94 TEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
+.+.|+.+-.|-.||..+
T Consensus 170 ~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 170 ADELLEEDIRNNSAWNQR 187 (318)
T ss_pred HHHHHHHhhhccchhhee
Confidence 999999887777776554
No 277
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.97 E-value=0.41 Score=30.50 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=41.8
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
++.....+...+..| +|.-|+.+.+.++.. +|++..+...++.++..+|.-.
T Consensus 70 ~d~vl~~A~~~~~~g--d~~wA~~L~d~l~~a----dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAG--DYQWAAELLDHLVFA----DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHhc
Confidence 566778888899988 999999999999999 9999999999999988877543
No 278
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.017 Score=41.88 Aligned_cols=83 Identities=23% Similarity=0.145 Sum_probs=49.4
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CC------------CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LS------------DSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.....+.|+..|+.+ +|..|...|.+++.... +. .+.-...+.+.+.|-++++.+..|+-.+.
T Consensus 222 ~~~~k~~~~~~~kk~--~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQ--RYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhccchhhhhhc--cHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 455677888999988 89999999988875521 00 01112234445555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
.++..++...++||++++++
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~ 319 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAY 319 (372)
T ss_pred cccccChhhCcHHHHHHhHH
Confidence 55555555555555555544
No 279
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.90 E-value=1.1 Score=33.96 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHH----hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCH-
Q 033417 14 ESEKADLDAIAA----LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNY- 87 (119)
Q Consensus 14 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~- 87 (119)
+++++.++.... ..+-....+++.|..++-.. +|++|...+.+.++. +.+.. ...+..|.|+..+|+.
T Consensus 284 ~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--~w~~A~~~f~~L~~~----s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 284 EEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--DWEEAAEYFLRLLKE----SKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--hHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccch
Confidence 345555554332 12334566889999999988 999999999999988 65544 4556678899999999
Q ss_pred ------HHHHHHHHHHHHh
Q 033417 88 ------RRALTDTEEALKL 100 (119)
Q Consensus 88 ------~~A~~~~~~al~l 100 (119)
++|...++++-.+
T Consensus 358 ~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 8888888887654
No 280
>PLN03077 Protein ECB2; Provisional
Probab=93.72 E-value=0.46 Score=38.43 Aligned_cols=78 Identities=6% Similarity=-0.046 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++.+.++.. .+.|+ +..|...-..+...| +.+.+....++.+++ .|+++..|..++.+|...|+|++|...
T Consensus 642 ~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~--~~e~~e~~a~~l~~l----~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 642 TEAYNFINKM-PITPD-PAVWGALLNACRIHR--HVELGELAAQHIFEL----DPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh----CCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 3444444443 24554 556666666666666 889999999999999 999999999999999999999999998
Q ss_pred HHHHHH
Q 033417 94 TEEALK 99 (119)
Q Consensus 94 ~~~al~ 99 (119)
.+.-.+
T Consensus 714 r~~M~~ 719 (857)
T PLN03077 714 RKTMRE 719 (857)
T ss_pred HHHHHH
Confidence 876544
No 281
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1.2 Score=33.34 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=79.7
Q ss_pred CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----CH
Q 033417 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NY 87 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~ 87 (119)
+.++.......+...+|+.--+|..+..++.+.+-.+|..=+....++++. +|.+-.+|..|=.+..... ..
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~----D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ----DPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CcccccchHHHHHHHHHHhcccccc
Confidence 345666777888889999999999999999987753478899999999999 8878777766655544432 36
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 88 RRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+-+..+.++|.-++.|..+|..+...+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 7888999999999999999998876554
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.56 E-value=1 Score=34.49 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRALTDTEEALKL-CPTNVKVVI 109 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~ 109 (119)
.-...|+++.+.| +.++|+..+...++. .|. +..++.++..|++.++.|.++.....+==++ -|......|
T Consensus 261 ~KrRLAmCarklG--r~~EAIk~~rdLlke----~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 261 AKRRLAMCARKLG--RLREAIKMFRDLLKE----FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hHHHHHHHHHHhC--ChHHHHHHHHHHHhh----CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 3457899999999 899999999999987 553 5678999999999999999988877763222 245555555
Q ss_pred HHH
Q 033417 110 LCS 112 (119)
Q Consensus 110 ~~a 112 (119)
..|
T Consensus 335 TaA 337 (539)
T PF04184_consen 335 TAA 337 (539)
T ss_pred HHH
Confidence 444
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=1.8 Score=30.26 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHH------HHHHhHHHHHh-chHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIE------LKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLL 83 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~ 83 (119)
++++...+++...+..+...- ....|..+-.. . ++++||..|+++-+.-.. ....--.++...|..-..
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 345555666555554332222 22455555443 3 789999999998776111 011112234444444556
Q ss_pred hcCHHHHHHHHHHHHHhCCCc
Q 033417 84 LGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~ 104 (119)
+++|.+||..|+++..-.-+|
T Consensus 167 leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 899999999999987654433
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.44 E-value=0.69 Score=31.33 Aligned_cols=73 Identities=15% Similarity=0.008 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
-.++..+..+++..|..+ ++..|...++...+..|.-. .+......|.++-..|++.+|.+.++.++..-|+.
T Consensus 121 A~d~a~lLglA~Aqfa~~--~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 121 AHDAAMLLGLAQAQFAIQ--EFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred CCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 345677888999999999 99999999999998843322 23344445677888999999999999999988864
No 285
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.18 E-value=0.65 Score=26.35 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.++..+..++..+=+.| ++.+|+.+|+.+++.
T Consensus 4 ~~A~~~a~~AVe~D~~g--r~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEG--NAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 45667777888888888 788888888888876
No 286
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.08 E-value=0.92 Score=25.72 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSV 72 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~ 72 (119)
.|.+|++.+.+++.. .|+.+.
T Consensus 28 ~Y~~aIe~L~q~~~~----~pD~~~ 48 (75)
T cd02682 28 NYKKAIEVLSQIVKN----YPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHh----CCChHH
Confidence 355556666666655 555444
No 287
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.90 E-value=1.7 Score=30.61 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=54.1
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.|....+..-+.+ ..+.|-..|.+|+.. .+....+|...|..-+.. ++.+.|...|+.+++.-|.++..|..-
T Consensus 3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--GIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3555555565655 588888899999876 667788899888887775 555669999999999999887776543
No 288
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.89 E-value=1.6 Score=32.29 Aligned_cols=72 Identities=7% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHHHHHHhHHHHH---hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVK---KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---------GNYRRALTDTEE 96 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~---~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~ 96 (119)
+....-...|.++-+ .| +.++|+..+..++..+ .+.+++.+.-.|.+|-.+ ...++|+..|++
T Consensus 177 ~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~---~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESD---ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred cchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 344555677777777 78 8999999999965442 567778888888887652 357899999999
Q ss_pred HHHhCCCcH
Q 033417 97 ALKLCPTNV 105 (119)
Q Consensus 97 al~l~p~~~ 105 (119)
+.+++|+..
T Consensus 252 gFe~~~~~Y 260 (374)
T PF13281_consen 252 GFEIEPDYY 260 (374)
T ss_pred HHcCCcccc
Confidence 999998653
No 289
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=2.5 Score=33.05 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH------HHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR------AHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------a~~~~~l~~ 86 (119)
+..+.-.+......+|..+....+.|......|. .+..++.....+... .|.+..+...+ |...-.+|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (620)
T COG3914 83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEIAEWL----SPDNAEFLGHLIRFYQLGRYLKLLGR 157 (620)
T ss_pred chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHHHHhc----CcchHHHHhhHHHHHHHHHHHHHhcc
Confidence 3344556677777899999999999999988773 444445555558888 77776666655 777777899
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHH
Q 033417 87 YRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
..++.....++.++.|.++...-
T Consensus 158 ~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 158 TAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHh
Confidence 99999999999999998865543
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=1.7 Score=30.62 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
-+...+.++-..|+.-+ +|++|-..+.++++
T Consensus 29 gaas~yekAAvafRnAk-~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAK-KFEKAKDCLLKASK 59 (308)
T ss_pred hhHHHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence 34455556666665554 67777666666663
No 291
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.65 E-value=3.1 Score=32.13 Aligned_cols=86 Identities=16% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 033417 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN--LLLGNYRRALTDTEEA 97 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~--~~l~~~~~A~~~~~~a 97 (119)
.++...-.|.++.+|..-|..--..| +.+.|-..|+-||+. ...+..-+.-.+.+- ...|.++.|...|++.
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~Lg--dtdRaRaifelAi~q----p~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLG--DTDRARAIFELAISQ----PALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhcC----cccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 33344447888888888888888888 888888888888886 333332223334433 3468888888888888
Q ss_pred HHhCCCcHHHHHHHH
Q 033417 98 LKLCPTNVKVVILCS 112 (119)
Q Consensus 98 l~l~p~~~~a~~~~a 112 (119)
|+..+ +.+.|..-|
T Consensus 534 L~rt~-h~kvWisFA 547 (677)
T KOG1915|consen 534 LDRTQ-HVKVWISFA 547 (677)
T ss_pred HHhcc-cchHHHhHH
Confidence 88765 444655544
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=1.2 Score=31.11 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=36.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH------HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS------VLYANRAHVNLL-LGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~a~~~~~-l~~~~~A~~~~~~al~l 100 (119)
+..+.+.++++ +.+ +..+|+.++.++|++ -.+-. ..+..+|.+|.. +.++++||.+|+++-+.
T Consensus 74 at~YveA~~cy-kk~--~~~eAv~cL~~aieI----yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 74 ATTYVEAANCY-KKV--DPEEAVNCLEKAIEI----YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHHHHh-hcc--ChHHHHHHHHHHHHH----HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444555444 444 578888888888877 32222 222344555543 46777777777777654
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.93 E-value=0.7 Score=33.11 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+.++|+..|.+.+++++....+-..++-.+-.+++++++|.+.+..|++.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 6899999999999995443334445666777789999999999999998875
No 294
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.80 E-value=1.4 Score=30.54 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 39 NEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
..+.+.+ ..+++|.....-++- +|.+......+=..+...|+|++|...++-+-++.|++.
T Consensus 9 seLL~~~--sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDN--SLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhc--cHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456666 789999999999999 888888777777788889999999999999999999763
No 295
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=0.12 Score=37.61 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.+.+.++.+ .+..|+..-..++.. ++....+++.++..+..+.++++|+.+...+....|++....-.+
T Consensus 280 n~~~~~lk~~--~~~~a~~~~~~~~~~----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 280 NLAAVGLKVK--GRGGARFRTNEALRD----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred chHHhccccc--CCCcceecccccccc----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 3455555555 566666666666666 788889999999999999999999999999999999887655443
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=0.67 Score=35.66 Aligned_cols=92 Identities=17% Similarity=0.078 Sum_probs=74.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+...+.+.......|+.+.-+...+..+...| +-+.|+..++..++ ++-..-....++.+|.++.-+.+|..|..
T Consensus 249 ~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g--~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 249 GEECEKALKKYRKRYPKGALWLLMEARILSIKG--NSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcc--cHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556777888889999999999999999988 78888888888776 22245667889999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHH
Q 033417 93 DTEEALKLCPTNVKVVI 109 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~ 109 (119)
++....++.. +..++|
T Consensus 325 ~~~~L~desd-WS~a~Y 340 (546)
T KOG3783|consen 325 SFDLLRDESD-WSHAFY 340 (546)
T ss_pred HHHHHHhhhh-hhHHHH
Confidence 9999888775 444444
No 297
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.31 E-value=0.8 Score=25.13 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...=+.| ++++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g--~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAG--NYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 3556667777777777 899999999888876
No 298
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.06 E-value=2 Score=29.72 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=47.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc---ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ---NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.....+.|..++..| +|++|+..|+.+... +.+ ......+...+..|...+|+.++.+..+=+.+
T Consensus 178 ~~l~~~~A~ey~~~g--~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLG--DYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334558899999998 899999999988644 122 22334566677889999999998888776554
No 299
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.90 E-value=0.54 Score=33.14 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=52.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
.+.+....+++..++|.++..+...|.+|.+.| .+..|+..++..++. .|+.+.+-.-+...
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~--c~~vAl~dl~~~~~~----~P~~~~a~~ir~~l 258 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG--CYHVALEDLSYFVEH----CPDDPIAEMIRAQL 258 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC--CchhhHHHHHHHHHh----CCCchHHHHHHHHH
Confidence 455667788888999999999999999999999 899999999999999 77777766555443
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.51 E-value=2.4 Score=28.71 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=47.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+....+...+..+ ++++|+..+.+++.. +.+..-.+.+-.++|.+.+..|.+++|+...+..
T Consensus 90 laaL~lAk~~ve~~--~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 90 LAALELAKAEVEAN--NLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 34567788888888 899999999999976 1112223456778899999999999999876653
No 301
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.22 E-value=1 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+++|.+|..+|+++.|....++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678899999999999999999885
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.02 E-value=6.2 Score=30.69 Aligned_cols=76 Identities=17% Similarity=0.058 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHhc--hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC
Q 033417 30 AAIELKEKGNEYVKKG--KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~ 103 (119)
.+.+.+..|.++.... + ++..|..+|..|... ....+.+++|.|+.. ..+...|+..++++.+.+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~-d~~~A~~yy~~Aa~~------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-- 394 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKER-DYRRAFEYYSLAAKA------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-- 394 (552)
T ss_pred CchHHHHHHHHHHcCCccc-cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--
Confidence 3555666777766543 3 678888888888776 456667777777764 246788888888888876
Q ss_pred cHHHHHHHHhc
Q 033417 104 NVKVVILCSGS 114 (119)
Q Consensus 104 ~~~a~~~~a~~ 114 (119)
++.+.+.++..
T Consensus 395 ~~~A~~~~~~~ 405 (552)
T KOG1550|consen 395 NPSAAYLLGAF 405 (552)
T ss_pred ChhhHHHHHHH
Confidence 55656555543
No 303
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.00 E-value=1 Score=33.55 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSEN----SVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+..+|..+-+.. |+++|+-+..+|.++-... +..+ ..+++.++.++..+|+..+|.++|+++.++
T Consensus 164 vcv~Lgslf~~l~--D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQLK--DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHHHH--hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4566777777766 8888888888887762221 1111 346677888888999999999999998775
No 304
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.94 E-value=1.1 Score=25.48 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|..+=+.| +|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g--~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEG--RFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 3566677777777878 899999998888866
No 305
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.85 E-value=3.5 Score=33.81 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++......+++-..+-..-++|-..+ .+++|...|++++.. .|. ....+..=.+|.+-+.|.+--..
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~--~~d~~~~~Ye~~~~~----~P~-eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG--KLDEAVHLYERANQK----YPS-EELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh----CCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677766667777788888888998988 799999999999999 888 66667777888888888877666
Q ss_pred HHHHHHhCCCcHHHHHH
Q 033417 94 TEEALKLCPTNVKVVIL 110 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~ 110 (119)
.=+.-+.-|.++--++.
T Consensus 133 a~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 133 ALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHhCCcccchHHH
Confidence 66666677776654443
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.82 E-value=1.4 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHH--HHHHHhc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDC--YTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~--~~~al~~ 62 (119)
+.+...|-.+...| ++++|+.. |.-+..+
T Consensus 2 e~~y~~a~~~y~~~--ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKG--KYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHh
Confidence 45677788889988 89999999 4477666
No 307
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.69 E-value=1.8 Score=27.58 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
......++...+..|++.-|...++.++..+|+|.++...++.++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4455677888889999999999999999999999999988887764
No 308
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.59 E-value=0.98 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV 64 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~ 64 (119)
.+-+.+.++..+.|..+..|...|.-..+.| +++.|...|++.++++|
T Consensus 13 aaaely~qal~lap~w~~gwfR~g~~~ekag--~~daAa~a~~~~L~ldp 60 (287)
T COG4976 13 AAAELYNQALELAPEWAAGWFRLGEYTEKAG--EFDAAAAAYEEVLELDP 60 (287)
T ss_pred HHHHHHHHHhhcCchhhhhhhhcchhhhhcc--cHHHHHHHHHHHHcCCc
Confidence 4667889999999999999999999999999 89999999999999943
No 309
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.54 E-value=6 Score=34.32 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++.+.++...+.-......|...|..+++.. +-++|-+.+.+|+.-.|+ .+...+....|...++.|+.+.+...|
T Consensus 1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--e~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQN--EAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhccc--HHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHH
Confidence 3444455544444455677778888888776 667777778888877333 235666677777777888888888888
Q ss_pred HHHHHhCCCcHHHHH
Q 033417 95 EEALKLCPTNVKVVI 109 (119)
Q Consensus 95 ~~al~l~p~~~~a~~ 109 (119)
.-.+.-.|.-.+.|.
T Consensus 1624 Egll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1624 EGLLSAYPKRTDLWS 1638 (1710)
T ss_pred HHHHhhCccchhHHH
Confidence 777777776555553
No 310
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.47 E-value=1.1 Score=19.82 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++.+...|++++...|.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34555555555555555555555443
No 311
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.45 E-value=0.96 Score=34.18 Aligned_cols=57 Identities=19% Similarity=0.065 Sum_probs=50.1
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.....+|.+.+ +.+.|+..-.+.|.+ +|....-+...|.|+..+.+|.+|-..+--+
T Consensus 232 tklv~CYL~~r--kpdlALnh~hrsI~l----nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 232 TKLVTCYLRMR--KPDLALNHSHRSINL----NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhcC--CCchHHHHHhhhhhc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889988 799999999999999 9999999999999999999999998765443
No 312
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.33 E-value=1.4 Score=25.03 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...+..+=+.| +|++|+.+|..+|+.
T Consensus 5 ~Ai~~a~~Ave~D~~g--~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEG--RYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 4666777777787888 899999999999877
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.67 E-value=2.7 Score=30.36 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++...|..++..|.+.+|++.+++++.++|-+...+..+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l 319 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL 319 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence 3445556677777888888888888888887665555444
No 314
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.37 E-value=6.5 Score=27.16 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 49 YYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
-+.|...|++|+.+. |..+|..-.+..|.+..++. +|+.++|+..++++++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 477888888888762 33466666677777877765 8999999999988875
No 315
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.26 E-value=1.9 Score=35.68 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.+++|+..|+..-. .|.-|.=|...|.+|.++|+|+|-+.++.-|++--|.+|..-
T Consensus 534 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 534 DFTQALSEFSYLHG-----GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHHHHHHhcC-----CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 47777777776544 367778899999999999999999999999999888877543
No 316
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.25 E-value=1.7 Score=24.66 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
.+..+...|...=..| +|++|+..|.++|+.+
T Consensus 5 kai~Lv~~A~~eD~~g--ny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKG--NAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhh--hHHHHHHHHHHHHHHH
Confidence 3556666676666767 8999999999999883
No 317
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.80 E-value=5.7 Score=31.79 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.....+++..+.-..+..-.+-|+.+-... -|+++...|+++|.+.+++.- +....|.......+.-.+.+.|..-|
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~--yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHK--YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 334556666555555666677777777766 899999999999998655322 33445555555555556789999999
Q ss_pred HHHHHhCC-CcHHHHH
Q 033417 95 EEALKLCP-TNVKVVI 109 (119)
Q Consensus 95 ~~al~l~p-~~~~a~~ 109 (119)
++||+..| .+.+..|
T Consensus 574 EqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 574 EQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHHhcCCHHHHHHHH
Confidence 99999887 3344443
No 318
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.69 E-value=1.9 Score=24.16 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...=..| +|++|+.+|.++++.
T Consensus 5 ~A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAG--NYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 3566777777777888 899999999998876
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.50 E-value=3.3 Score=32.18 Aligned_cols=77 Identities=19% Similarity=0.098 Sum_probs=60.5
Q ss_pred HHHHHHhHHHHHhc--hH-hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcH
Q 033417 32 IELKEKGNEYVKKG--KK-HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 32 ~~~~~~g~~~~~~g--~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~ 105 (119)
.+....|.+|.+.. .+ ++..|+..|.++.+. .++.+.+.+|.++..-. ++..|...|..|.+. .+.
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~ 360 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI 360 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence 35667888887742 12 578899999999988 56778888999988654 578999999998775 579
Q ss_pred HHHHHHHhccc
Q 033417 106 KVVILCSGSHP 116 (119)
Q Consensus 106 ~a~~~~a~~~~ 116 (119)
.+.+++|.+|.
T Consensus 361 ~A~~~la~~y~ 371 (552)
T KOG1550|consen 361 LAIYRLALCYE 371 (552)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 320
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.61 E-value=12 Score=28.39 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--------------------------- 65 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------- 65 (119)
+..+........++.|+.+-+-...+..+|+.| +..++-..++.+.+.+|-
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~--~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDG--NLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc--chhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 345666777777888999999999999999999 899988888888877431
Q ss_pred -CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 66 -SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 66 -~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
-.|++....+.++..-+.-|++..|....+.+..+.|.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 13455555555555555556666666666666665553
No 321
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.53 E-value=2.6 Score=23.04 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...|.-.-..|++++|+..|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455555567777777777776653
No 322
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.28 E-value=2.5 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| +|++|+.+|.++|+.
T Consensus 6 Ai~lv~~Av~~D~~g--~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRG--DAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 556667777777777 899999999999876
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.25 E-value=5 Score=31.02 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
.-...|+.|... -+.++.+|.+-..-..+.+.+.+.-..|.+++..+|+++..|...|.
T Consensus 89 rIv~lyr~at~r----f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~ 147 (568)
T KOG2396|consen 89 RIVFLYRRATNR----FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK 147 (568)
T ss_pred HHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh
Confidence 335668888888 77889998887666666677999999999999999999999876654
No 324
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.08 E-value=6.1 Score=29.34 Aligned_cols=80 Identities=10% Similarity=-0.110 Sum_probs=55.3
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHH-HHhCCCcHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLL---LGNYRRALTDTEEA-LKLCPTNVKVVIL 110 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~---l~~~~~A~~~~~~a-l~l~p~~~~a~~~ 110 (119)
+.-..|-... +|+.-+...+..-.+ |. .-+..+.+.+..|.++-+ .|+.++|+..+..+ ..-++.+++.+-.
T Consensus 146 ~lllSyRdiq--dydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 146 NLLLSYRDIQ--DYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHhhhhh--hHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334444444 777777766554333 21 134456677788888888 89999999999995 4566778999988
Q ss_pred HHhcccCC
Q 033417 111 CSGSHPNQ 118 (119)
Q Consensus 111 ~a~~~~~~ 118 (119)
.|.+|-..
T Consensus 223 ~GRIyKD~ 230 (374)
T PF13281_consen 223 LGRIYKDL 230 (374)
T ss_pred HHHHHHHH
Confidence 88887544
No 325
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.83 E-value=10 Score=26.87 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcc-cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 48 HYYDAIDCYTRAINQN-VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+.++..+|+++..+= ....|+.+..-..++.=.+...++++|++.|++++.+
T Consensus 86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 4666666666665441 0112333333344444444555666666666665543
No 326
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.81 E-value=12 Score=27.76 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc--------------C-----CCcccHHH-
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV--------------L-----SDSENSVL- 73 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--------------~-----~~~~~~~~- 73 (119)
++-+.....+..+||+-+.++.-++..--. -..+|...+.++++... . ....+...
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~----Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEAT----TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 344566777788899988888766554332 24555566666554310 0 01233333
Q ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 74 -YANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 74 -~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
-..++.|-.++|+..||+..++-..+-.|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 44568899999999999999988766555
No 327
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.43 E-value=9.5 Score=28.20 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.-...++.+..+.|+-...++...-.....| .+.++...+..... |+ -.....++..+|..+.++|+..+|...|
T Consensus 314 ~I~aLYdaL~~~apSPvV~LNRAVAla~~~G---p~agLa~ve~L~~~-~~-L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 314 AIDALYDALEQAAPSPVVTLNRAVALAMREG---PAAGLAMVEALLAR-PR-LDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred HHHHHHHHHHHhCCCCeEeehHHHHHHHhhh---HHhHHHHHHHhhcc-cc-cccccccHHHHHHHHHHhCChHHHHHHH
Confidence 3334455566666665555555555555556 77777766555442 11 1234567788999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHH
Q 033417 95 EEALKLCPTNVKVVILCS 112 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a 112 (119)
++++.+.++-.+.-+.+.
T Consensus 389 drAi~La~~~aer~~l~~ 406 (415)
T COG4941 389 DRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHhcCChHHHHHHHH
Confidence 999999988776665543
No 328
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.38 E-value=2.1 Score=33.82 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHhHHHHH-hchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 36 EKGNEYVK-KGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 36 ~~g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+.+..|.+ .| +...|+.++..|+.. .|... .-..++|+++++-|-..+|-....++|.++-..+-.++.+|.
T Consensus 611 n~aglywr~~g--n~~~a~~cl~~a~~~----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~ 684 (886)
T KOG4507|consen 611 NEAGLYWRAVG--NSTFAIACLQRALNL----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGN 684 (886)
T ss_pred ecccceeeecC--CcHHHHHHHHHHhcc----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcch
Confidence 34445544 45 899999999999998 66443 446789999999999999999999999999888889999988
Q ss_pred ccc
Q 033417 114 SHP 116 (119)
Q Consensus 114 ~~~ 116 (119)
+++
T Consensus 685 ~~l 687 (886)
T KOG4507|consen 685 AYL 687 (886)
T ss_pred hHH
Confidence 775
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.25 E-value=11 Score=26.72 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
....+..+...+....+.| .++.|...+.++....+...+..+.+.+..+..+-..|+..+|+...+..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g--~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAG--NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCC--CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4466778899999999999 8999999999988873332334677888889999999999999999998887
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.19 E-value=7.3 Score=28.24 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..+.-.+..+...| .+.+|++..++++.+ +|.+...+..+-..+..+|+--.++..|.+
T Consensus 280 kllgkva~~yle~g--~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 280 KLLGKVARAYLEAG--KPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33445566677777 899999999999999 999998888888889999998888887765
No 331
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.11 E-value=3.5 Score=33.15 Aligned_cols=78 Identities=22% Similarity=0.174 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
+..+....+.+.++...|-++|..++.-..-++.. .|....++..|+.+|..+++.+-|+.+..-....+|.++.+
T Consensus 88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~----~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALES----QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc----cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 44555566677777665555899999988888888 99999999999999999999999999988888999998555
Q ss_pred HH
Q 033417 108 VI 109 (119)
Q Consensus 108 ~~ 109 (119)
-.
T Consensus 164 ~e 165 (748)
T KOG4151|consen 164 SE 165 (748)
T ss_pred HH
Confidence 44
No 332
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=84.91 E-value=13 Score=27.34 Aligned_cols=73 Identities=15% Similarity=0.037 Sum_probs=52.4
Q ss_pred HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+-|+..+.++..+.-.+.-| +|..|-.++-.-..+.+..+++...+....-..-.-+.+|+-|+++..+.-+
T Consensus 123 nf~~e~i~~lykyakfqyeCG--NY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECG--NYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhcc--CcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346888899999999999888 8999887755544444444454555555554455567899999999988766
No 333
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.23 E-value=3.7 Score=23.15 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| +|++|+..|..+|+.
T Consensus 6 A~~l~~~Ave~d~~~--~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEG--DYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 455566666666667 888888888888876
No 334
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=83.95 E-value=20 Score=31.46 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 15 SEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++...+.++...-|+ +......-+..-|+.| +.+.+-..|+-.+.. .|...++|+-....-.+.|....+..
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G--DaeRGRtlfEgll~a----yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYG--DAERGRTLFEGLLSA----YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC--CchhhHHHHHHHHhh----CccchhHHHHHHHHHHccCCHHHHHH
Confidence 455667777777777 8888888899999999 999999999999999 99999999988888889999999999
Q ss_pred HHHHHHHh--CCCcHHHHHHH
Q 033417 93 DTEEALKL--CPTNVKVVILC 111 (119)
Q Consensus 93 ~~~~al~l--~p~~~~a~~~~ 111 (119)
.|++++.+ .|...+-+|.+
T Consensus 1656 lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHH
Confidence 99999875 45555555443
No 335
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.61 E-value=14 Score=29.67 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...+...+.+..+|.+.. +.+.|.+.+.+|-+. +|.++-....+..+...-|.-++|+.........
T Consensus 390 ~~~FaK~qR~l~~CYL~L~--QLD~A~E~~~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 390 SDRFAKIQRALQVCYLKLE--QLDNAVEVYQEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3445667788899999988 899999999999999 9999988888888888889999999988877654
No 336
>PF12854 PPR_1: PPR repeat
Probab=83.14 E-value=3.5 Score=19.22 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 69 ENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
.+...|..+-..+.+.|+.++|++.+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3556677888888899999999987764
No 337
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=82.54 E-value=6.4 Score=21.86 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| ++++|+..|.++++.
T Consensus 8 A~~li~~Av~~d~~g--~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAG--DYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 455666677777777 788888888888766
No 338
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.15 E-value=8.1 Score=26.58 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~ 83 (119)
..-+..+..+.|+....+.++|..+...| +.-.|+-.|.+++-. ....+.+..|+...+.+
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~--~~l~avy~y~Rsl~~----~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQG--DDLDAVYYYIRSLAV----RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSS----SB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhcccc--chHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH
Confidence 34567788899999999999999999988 899999999999866 44457777888777666
No 339
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=82.09 E-value=8.4 Score=30.89 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=53.4
Q ss_pred HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-ccCCCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-NVLSDSE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
...||.++..|..+...+ +| +..+-+..|++|+.. +|+..+. -..+|...|..|-..|..+.|...+.++.+.+
T Consensus 342 LRQn~~nV~eW~kRV~l~--e~--~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY--EG--NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HhcCCccHHHHHhhhhhh--cC--ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 345777777787776655 34 678888888888765 4443333 34678888888888888888888888888764
No 340
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.88 E-value=4.9 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
-+..+|.-.=+.|+|++|+..|..+++.
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555555667777777777776653
No 341
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.74 E-value=8 Score=22.43 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
...++.+.|......| ++++|+..++++|.+.
T Consensus 40 ~~~all~lA~~~~~~G--~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 40 LAYALLNLAELHRRFG--HYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence 4677889999999999 9999999999999883
No 342
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.70 E-value=9.2 Score=26.86 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHhchHhHHHHHHHHHHHHhcccCCCc----ccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 033417 42 VKKGKKHYYDAIDCYTRAINQNVLSDS----ENSVLYANRAHVNLLLG-NYRRALTDTEEALKL 100 (119)
Q Consensus 42 ~~~g~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l 100 (119)
.+.| +++.|..++.++-...+..+| .....+++.|...+..+ ++++|+...++++++
T Consensus 4 ~~~~--~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQG--DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhC--CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566 899999999888665321133 33567888899999999 999999999999887
No 343
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.49 E-value=3.5 Score=31.93 Aligned_cols=49 Identities=20% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~ 83 (119)
+..+.+++-|..+...| ++..|.++|.+++.. --.+|.+|.++|.|...
T Consensus 333 ks~eilYNcG~~~Lh~g--rPl~AfqCf~~av~v----fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSG--RPLLAFQCFQKAVHV----FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcC--CcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHH
Confidence 45788999999999999 899999999999988 78889999999998654
No 344
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.27 E-value=12 Score=28.32 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.++.-.++.+.|..|..-| +++.|++.|.++-+.|.. .......+.|.-.+-.-+|+|.....+-.++.+.
T Consensus 146 KEsiRra~~Dl~dhy~~cG--~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 146 KESIRRALEDLGDHYLDCG--QLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred hHHHHHHHHHHHHHHHHhc--cHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4556778899999999999 899999999998888322 1122344555555556689998888887777654
No 345
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.23 E-value=5.2 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+...|.-.-..|+|.+|+..|.++|+
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444455666666666665554
No 346
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.43 E-value=7.8 Score=21.46 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=+.| +|++|+..|..+++.
T Consensus 6 a~~l~~~Av~~D~~g--~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDG--NYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 445566666666777 899999999888876
No 347
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.72 E-value=16 Score=28.85 Aligned_cols=68 Identities=22% Similarity=0.025 Sum_probs=45.7
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHhCCCcHHHHHHH
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE-ALKLCPTNVKVVILC 111 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~-al~l~p~~~~a~~~~ 111 (119)
.......+ +...++-.....+.. +|++..++.+++.++...|....++....+ +..+.|++.+...-+
T Consensus 74 si~~~~~~--~~~~~~~~~~~~l~~----~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 74 SILLAPLA--DSTLAFLAKRIPLSV----NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred Hhhccccc--cchhHHHHHhhhHhc----CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 44444444 555666666667777 788888888888887777776666666665 777777776665444
No 348
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=79.64 E-value=11 Score=22.62 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
..+.+......|...+-.| ||..|.....++-+. .+..+..|..-|.+-..+|
T Consensus 55 r~~ka~~al~~Gl~al~~G--~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEG--DWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcC
Confidence 3445666777888888888 888888888888666 4444555554455444444
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.26 E-value=15 Score=24.13 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 50 YDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
...++..++.+.. .| ++..+.+.+.++...|+.++|.....++..+-|.+
T Consensus 128 ~~~~~~a~~~l~~----~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRR----RP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3334445555555 45 67788889999999999999999999999999943
No 350
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=79.21 E-value=13 Score=23.39 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=45.3
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CC-c------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SD-S------ENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~-~------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+...|+..++.+ ++-.++-.|++|+.+... .. . -.+..--|+|..+..+|+.+=.+.+.+-|-
T Consensus 3 ~htllAd~a~~~~--~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEA--DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 3456788999998 999999999999876211 00 0 112234467888889999988888877543
No 351
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.57 E-value=6.2 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
-...+.|..+=..| +.++|+..|++++..
T Consensus 9 ~~~I~kaL~~dE~g--~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 9 FEEISKALRADEWG--DKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHhhhhhcC--CHHHHHHHHHHHHHH
Confidence 33444455554445 566666666666654
No 352
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.36 E-value=16 Score=26.06 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 69 ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
....++..++..+...|+++.++...++.+.++|-+..+|..+-.+|++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~ 199 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV 199 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4566777788888889999999999999999999999999888666543
No 353
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.41 E-value=14 Score=23.65 Aligned_cols=58 Identities=7% Similarity=0.019 Sum_probs=41.0
Q ss_pred HHHHHHHHH-hcHH-HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 17 KADLDAIAA-LKES-AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 17 ~~~~~~~~~-~~~~-~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
+..++.+.+ .+|+ .-+.++-++..+++.+ +|+.++.+.+..++. .|++..+....-.+
T Consensus 55 I~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk--eY~~s~~yvd~ll~~----e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 55 IVILEDLLKSAHPERRRECLYYLAVGHYRLK--EYSKSLRYVDALLET----EPNNRQALELKETI 114 (149)
T ss_pred HHHHHHHhhhcCcccchhhhhhhHHHHHHHh--hHHHHHHHHHHHHhh----CCCcHHHHHHHHHH
Confidence 344555553 3333 3455677888888988 999999999999999 88887765544333
No 354
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.23 E-value=10 Score=28.18 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
..+....+...|+..+..+ +++.|...|..|..++.. ..-++...++..|..++.+++.+..+-
T Consensus 37 ~~~~~e~lv~~G~~~~~~~--d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNN--DIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHHhhhHHHhcc--cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445778899999999999 999999999999988322 133456677778888888887776654
No 355
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=77.18 E-value=8.1 Score=21.44 Aligned_cols=14 Identities=14% Similarity=0.225 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhc
Q 033417 49 YYDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
+++|+....+|++.
T Consensus 5 ~~~A~~li~~Av~~ 18 (77)
T smart00745 5 LSKAKELISKALKA 18 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555555
No 356
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.82 E-value=7.6 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.|+.|....++||..+-...++.+..++..|.
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 57888888888888743334444444444443
No 357
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.83 E-value=23 Score=26.68 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc--cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN--VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....++.++..+-..| ..-.|.+..+++.++. --+.+..+.....+|.+|...|+.+.|..-|+.+..+
T Consensus 205 r~~~lyhmaValR~~G--~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLG--RLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3566778888888888 7888888888876651 1123555667777889999999999999999998764
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.41 E-value=25 Score=24.50 Aligned_cols=80 Identities=18% Similarity=0.114 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHHh----c---CHHHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLL----G---NYRRALTDTE 95 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l----~---~~~~A~~~~~ 95 (119)
...+.+....|..+.. .. |+.+|...|.++.+. .... .....++|.++..- + ....|+..+.
T Consensus 106 ~g~~~a~~~lg~~~~~G~gv~~--d~~~A~~~~~~Aa~~----g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 106 DGLAEALFNLGLMYANGRGVPL--DLVKALKYYEKAAKL----GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred cccHHHHHhHHHHHhcCCCccc--CHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 3345566666666665 22 677777777777666 3222 22355555555442 1 1225666666
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++-... ++.+.+.+|.+|
T Consensus 180 ~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 180 KAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHhc--CHHHHHHHHHHH
Confidence 655543 556666665544
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.33 E-value=20 Score=24.99 Aligned_cols=79 Identities=18% Similarity=0.015 Sum_probs=51.7
Q ss_pred HHHHHHhHHHHHhc--hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCc-
Q 033417 32 IELKEKGNEYVKKG--KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCPTN- 104 (119)
Q Consensus 32 ~~~~~~g~~~~~~g--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~~- 104 (119)
......|..+.... .++..+|+..|..+.+. ..+...+++|..+.. ..++.+|...|+++.+..-..
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 34444554443211 12578888888865544 677788889988876 448999999999998874222
Q ss_pred HHHHHHHHhccc
Q 033417 105 VKVVILCSGSHP 116 (119)
Q Consensus 105 ~~a~~~~a~~~~ 116 (119)
..+.+.+|..|.
T Consensus 148 ~~~~~~l~~~~~ 159 (292)
T COG0790 148 ALAMYRLGLAYL 159 (292)
T ss_pred HHHHHHHHHHHH
Confidence 233777776654
No 360
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.85 E-value=10 Score=21.09 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...|.-.-..|++++|+..|.++++
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445666666666666554
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.58 E-value=29 Score=24.98 Aligned_cols=81 Identities=10% Similarity=-0.061 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH---hcCHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---LGNYRRA 90 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---l~~~~~A 90 (119)
+..+..++++...+|++...+...-....+.. +-++.....++++.. +|.+..+|...-..... .-.+.+.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~--~~~~l~~~we~~l~~----~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVW--DSEKLAKKWEELLFK----NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 34556788888889988888777777777776 778888889999999 88888877654333222 2257788
Q ss_pred HHHHHHHHHh
Q 033417 91 LTDTEEALKL 100 (119)
Q Consensus 91 ~~~~~~al~l 100 (119)
...|.++++.
T Consensus 122 ~~~y~~~l~~ 131 (321)
T PF08424_consen 122 RDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 362
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.49 E-value=12 Score=29.01 Aligned_cols=55 Identities=24% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++...+++...|..| +|.-+.+...+++-- +|.+..+....|.++.++|--.|+-
T Consensus 452 adrVl~la~ea~~kG--dyrW~a~lln~~VfA----dp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 452 ADRVLELAREAFDKG--DYRWAAELLNQAVFA----DPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHHHhcc--cchHHHHHHhhHHhc----CCccHHHHHHHHhHHHHhhhhhccc
Confidence 556778899999999 999999999999999 9999999999999999988655543
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.94 E-value=12 Score=34.05 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.-...-..| +|+.|..+|++++.. +|+....+...-.+.+..|++...+...+-...-.++..+-++..
T Consensus 1454 ~qil~~e~~g--~~~da~~Cye~~~q~----~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1454 QQILEHEASG--NWADAAACYERLIQK----DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred HHHHHHHhhc--cHHHHHHHHHHhhcC----CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 3444455556 788888888888888 777776666666777778888888776665555455555544443
No 364
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=27 Score=26.11 Aligned_cols=42 Identities=21% Similarity=0.125 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
-|++|...-.+++++ ++.+..+.-..|+++...|++.++.+.
T Consensus 190 ~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred cchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 566666666666666 555555444455555445555555443
No 365
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=72.78 E-value=4.3 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=38.9
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
-+.++.+|..-++-..+.|.|.+.-..|.++++.+|.|++.|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~ 146 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIY 146 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeee
Confidence 47889999988888888899999999999999999999887743
No 366
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.81 E-value=58 Score=28.12 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=49.8
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..|.+.|....+.| ...+|++.|-+ .+++..|...-.+-.+.|+|++-+.+...+.+
T Consensus 1104 p~vWsqlakAQL~~~--~v~dAieSyik---------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGG--LVKDAIESYIK---------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcC--chHHHHHHHHh---------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 677889999999988 89999999943 46778888888888899999999999998876
No 367
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.78 E-value=14 Score=20.43 Aligned_cols=17 Identities=47% Similarity=0.477 Sum_probs=10.2
Q ss_pred HhcCHHHHHHHHHHHHH
Q 033417 83 LLGNYRRALTDTEEALK 99 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~ 99 (119)
..|++++|+..|..+++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34666666666666554
No 368
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=71.45 E-value=23 Score=25.60 Aligned_cols=32 Identities=34% Similarity=0.315 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHh
Q 033417 69 ENSVLYANRAHVNLLLG-----NYRRALTDTEEALKL 100 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~-----~~~~A~~~~~~al~l 100 (119)
....++..++.+++.++ +|++|+..++.++.-
T Consensus 174 ~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 174 WKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 44567778888999998 899999999999874
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.82 E-value=18 Score=20.82 Aligned_cols=43 Identities=9% Similarity=-0.080 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.-....|.=++...+.++|+..++++++..++.+.-+..+|.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3455667777788899999999999999888877776666643
No 370
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.43 E-value=16 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=18.5
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.++|..+...| ++++|+.+|..||..
T Consensus 67 V~lGE~L~~~G--~~~~aa~hf~nAl~V 92 (121)
T PF02064_consen 67 VQLGEQLLAQG--DYEEAAEHFYNALKV 92 (121)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 46677777777 777777777777777
No 371
>PF13041 PPR_2: PPR repeat family
Probab=70.28 E-value=12 Score=18.65 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..|..+=..+.+.|++++|+..+++-.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455555566666666666666666554
No 372
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.05 E-value=24 Score=26.04 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+|-....+..++.++...|++..|....++||=
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999874
No 373
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=68.99 E-value=41 Score=25.53 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.....+.|-.++..| .|.+|+..|+..|-.
T Consensus 204 L~~~Lk~gyk~~t~g--KF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 204 LEERLKEGYKLFTAG--KFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 444566788999999 699999998887744
No 374
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.95 E-value=43 Score=26.65 Aligned_cols=80 Identities=19% Similarity=0.098 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc---------c--------cCCCcccHHHHHHH---HHHHHHhcC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ---------N--------VLSDSENSVLYANR---AHVNLLLGN 86 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---------~--------~~~~~~~~~~~~~~---a~~~~~l~~ 86 (119)
+|=+...+.+.+...-..| +.+-|.....++|=. . |-..|.+-.+|..+ -.-+.+.|-
T Consensus 280 sPYHvdsLLqva~~~r~qg--D~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQG--DREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred CCcchhHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4667888889998888888 888888887777611 1 11245554433322 223345689
Q ss_pred HHHHHHHHHHHHHhCCC-cHHHH
Q 033417 87 YRRALTDTEEALKLCPT-NVKVV 108 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~-~~~a~ 108 (119)
|..|.+.|+..++++|. +|-+.
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhH
Confidence 99999999999999997 66544
No 375
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.93 E-value=17 Score=20.43 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=11.1
Q ss_pred cCHHHHHHHHHHHHHh
Q 033417 85 GNYRRALTDTEEALKL 100 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l 100 (119)
|+|++|+..|..+++.
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7777777777776653
No 376
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.35 E-value=18 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=18.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCc
Q 033417 84 LGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~ 104 (119)
.++...|+..+++|++++|.-
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred cccHHHHHHHHHHHHHhCCCC
Confidence 357889999999999999864
No 377
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.00 E-value=9.2 Score=16.47 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
|..+-.++.+.|++++|...+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455666666666666666543
No 378
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.94 E-value=35 Score=23.08 Aligned_cols=83 Identities=6% Similarity=0.015 Sum_probs=58.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-----------------------------------CCcccHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-----------------------------------SDSENSVLYA 75 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------------------------~~~~~~~~~~ 75 (119)
+.+....|.+...+| +...|+..|..+-.-.+- .+|-...+.-
T Consensus 94 vLA~mr~at~~a~kg--dta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArE 171 (221)
T COG4649 94 VLARMRAATLLAQKG--DTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSARE 171 (221)
T ss_pred HHHHHHHHHHHhhcc--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHH
Confidence 455667777888877 888888888775433110 2444455666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 76 NRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|.+-++-|++..|.+.|.+... +...+..-..++++.+
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 778888899999999999998776 6566777777776544
No 379
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.93 E-value=39 Score=23.63 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 49 YYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
-+.|...|+.|+++ .|..+|..-.+..|.+..++. +++.++|+...+++++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788889998876 233355555666777777765 6999999987777664
No 380
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.56 E-value=26 Score=24.17 Aligned_cols=50 Identities=26% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 51 DAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 51 ~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..|+.+++|++.-.. ...-...+...+|.-|+..|+|++|+..++.+...
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445555555543111 02233456678899999999999999999998654
No 381
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.16 E-value=21 Score=19.99 Aligned_cols=22 Identities=27% Similarity=0.066 Sum_probs=11.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 033417 78 AHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|.-.-..|+|++|+..|..+|+
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3333345566666666665554
No 382
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=65.74 E-value=23 Score=22.01 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
...+|..++..|++++|..++-.|+.+.|.-.+.+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 34567778888999999999999999988655443
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.38 E-value=57 Score=24.25 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHH--hcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL--LGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l 100 (119)
.......+..+|+.+ +|..|...+...+... .+.. ...+..++.+|.. .-++.+|...++..+..
T Consensus 131 ~~~~~~~a~~l~n~~--~y~aA~~~l~~l~~rl---~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRY--DYGAAARILEELLRRL---PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356778888999999 9999999999988741 2212 4566667777664 55789999999987764
No 384
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=63.72 E-value=68 Score=24.93 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHH--HHHHHhcc--------cCCCcccHHHHHHHH--HHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDC--YTRAINQN--------VLSDSENSVLYANRA--HVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~--~~~al~~~--------~~~~~~~~~~~~~~a--~~~ 81 (119)
+++.+.+..+....+-+. ...+..-..++. .|.+|+.. +.+.+.+. +.-.-.+..+-+.++ .-+
T Consensus 397 ekalnLLk~il~ft~yD~-ec~n~v~~fvKq---~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 397 EKALNLLKLILQFTNYDI-ECENIVFLFVKQ---AYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred HHHHHHHHHHHHhccccH-HHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 345555555555444333 223333333432 47776643 33333331 111112233334444 345
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 82 LLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+..|+|.++..++.=+.++.| ++.++.-+|.|++.
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e 507 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME 507 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence 678999999999999999999 99999999998753
No 385
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.71 E-value=12 Score=16.34 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|..+-.++.+.|++++|...+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555677888999999998887654
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.51 E-value=88 Score=26.17 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=51.1
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD-SENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.-.|.+....| +++.|+...+.+++..|... -....++...|.+..-.|++.+|....+.+.++
T Consensus 462 aL~a~val~~~--~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 462 ALRAQVALNRG--DPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 34566677777 89999999999999855432 234567888889999999999999999988876
No 387
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=63.44 E-value=59 Score=25.82 Aligned_cols=72 Identities=7% Similarity=-0.063 Sum_probs=57.0
Q ss_pred HHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 21 DAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
......||.+..+|..+-..+..+. +++.-..|++-+.. -|..+.+|..-....+..++|+..-..|.++|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~---~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQP---IDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCC---HHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455668999999988887776643 88888999998888 788888887777777778888888888887764
No 388
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=63.27 E-value=15 Score=17.23 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++.|...|++.+...|+ ++.|.+-
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 345666666666666653 4555443
No 389
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=62.80 E-value=41 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+.-.++..+|.-|.+.|++++|+..|.++.+-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 4456788899999999999999999999988754
No 390
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.75 E-value=34 Score=25.02 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..-+|+..++.++.. .|.+..+...+..+|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~----s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKK----SPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 567888889999999 999999999999999999999999999875
No 391
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.63 E-value=30 Score=23.56 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+....++-.|....+.| ++++|+..|.+.+..
T Consensus 163 ~~~~l~YLigeL~rrlg--~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLG--NYDEAKRWFSRVIGS 194 (214)
T ss_pred hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHcC
Confidence 34667888999999999 999999999999986
No 392
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=62.01 E-value=70 Score=24.49 Aligned_cols=67 Identities=22% Similarity=0.075 Sum_probs=56.1
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+.+..+...+...... +...|...-.+++++ .|+.+..-.--+..+++-|+..++-...+.+.+.+|
T Consensus 228 ~rAvLLtAkA~s~lda---dp~~Ar~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 228 SRAVLLTAKAMSLLDA---DPASARDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 3455566777777765 489999999999999 999988888888999999999999999999998877
No 393
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=61.74 E-value=28 Score=21.00 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
.+..+...|..++..| |.+.|--.|.+.+.+.
T Consensus 37 sa~~l~~~A~~~~~eg--d~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEG--DEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 5888999999999999 9999999998887663
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.01 E-value=81 Score=24.91 Aligned_cols=69 Identities=12% Similarity=-0.062 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS----VLYANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
.+......|..++..-. +++.|...+++++.++.+ +... .+.+-++.++.+.+... |+..+++.++.--
T Consensus 58 ea~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 58 EARVRLRLASILLEETE-NLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 57778899999997764 999999999999988433 2222 23444566777767666 9999999887543
No 395
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.58 E-value=85 Score=24.69 Aligned_cols=83 Identities=16% Similarity=0.034 Sum_probs=58.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc----cHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLLLG-NYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~ 105 (119)
+....++|..++.--+ +++.|-..+++++.+... -|. .-.++..++.+|.... .+..+..-.++++++...++
T Consensus 46 art~LqLg~lL~~yT~-N~elAksHLekA~~i~~~-ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTK-NVELAKSHLEKAWLISKS-IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc-cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 5556788888876654 899999999999877211 122 2345667788888877 78888899999999865544
Q ss_pred ----HHHHHHHhcc
Q 033417 106 ----KVVILCSGSH 115 (119)
Q Consensus 106 ----~a~~~~a~~~ 115 (119)
+..+.+++.+
T Consensus 124 ~wsckllfQLaql~ 137 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLH 137 (629)
T ss_pred hhhHHHHHHHHHHH
Confidence 4445555443
No 396
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=58.67 E-value=27 Score=25.62 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYA 75 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 75 (119)
+.+.+++..|...-+.| ..-+|+..|+.|+.+ .|+.-..+.
T Consensus 17 kkA~~l~~~av~~Eq~G--~l~dai~fYR~AlqI----~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDG--SLYDAINFYRDALQI----VPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcC--cHHHHHHHHHhhhcC----CchHHHHHH
Confidence 35888899999999988 789999999999998 666555554
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.52 E-value=89 Score=24.71 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
|.-.|-+....++.. .|.+|..-..++.++..+|.|+.+..+..
T Consensus 304 d~~aas~~~~~~lr~----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s 347 (831)
T PRK15180 304 DIIAASQQLFAALRN----QQQDPVLIQLRSVIFSHLGYYEQAYQDIS 347 (831)
T ss_pred CHHHHHHHHHHHHHh----CCCCchhhHHHHHHHHHhhhHHHHHHHhh
Confidence 455555555555555 55555555555566666666665555443
No 398
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=58.32 E-value=35 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+.+.|-..|.++++..|++..+|..+-.
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 3466667777777777777777766543
No 399
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=57.30 E-value=50 Score=21.30 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+|.++..+|.+|-++|+..++-...++|.+-
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5677899999999999999999999988888763
No 400
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=56.59 E-value=39 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
+..++..|.-..+-|...+|+..|+.|+++.|+-...++
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 344455556666678889999999999999987665555
No 401
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.46 E-value=80 Score=23.45 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....+++.+.|.-+.+.| |-+.|+..+.+..+......- +-.-....+|..|....-..+.++-.+..++-
T Consensus 101 ~ev~ea~~~kaeYycqig--Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIG--DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 445788999999999999 999999887776554211111 12223344566665555455555555555543
No 402
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.12 E-value=51 Score=25.85 Aligned_cols=70 Identities=19% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+..++-.|...|..+ ++.+|-+.+.+.++.... .....+-.+.-+|++.+.+|+..++...-+-++++.
T Consensus 444 ~a~~~~v~glfaf~qn--~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQN--DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 3556778899999988 899999999999988210 011223345566788888999999998888877764
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=91 Score=23.90 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.|++|-..-.++.--....+.+.+...+..|.+..-.++|..|..++-+|+...|.+
T Consensus 224 lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 224 LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 455555544443211111133556666777888888889999999998888888863
No 404
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.53 E-value=29 Score=21.06 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
-+--|..+..+|..|.+.|+.+.|+..|+.=-.+-|.+.
T Consensus 68 ~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 68 GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 355578899999999999999999999998878888764
No 405
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.29 E-value=41 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.4
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.++|..++..| +++++..++..||..
T Consensus 85 v~lGE~L~~qg--~~e~ga~h~~nAi~v 110 (143)
T KOG4056|consen 85 VQLGEELLAQG--NEEEGAEHLANAIVV 110 (143)
T ss_pred HHhHHHHHHcc--CHHHHHHHHHHHHhh
Confidence 47788888888 788888888888888
No 406
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.94 E-value=76 Score=27.58 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.|+....+.+.+...|... ....|+..+.++..+ .+.+.|.-.....+++..+..+++++.|+...+.|+.++
T Consensus 1011 s~~t~~~y~nlal~~f~~~--~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVK--NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CHHHHHHhhHHHHHHHhcc--CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888877 788888888887765 222477777888899999889999999999999988753
No 407
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.89 E-value=33 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=45.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+..-..+.|..+|..+ .|+.|--.|.. ..-|..+|..+..+|+|+-|....++|-.+
T Consensus 1193 N~A~i~~vGdrcf~~~--~y~aAkl~y~~------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEK--MYEAAKLLYSN------------VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred CchhHHHHhHHHhhhh--hhHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 4455678899999988 89888877743 444677889999999999999999987543
No 408
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.67 E-value=72 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+++..|-.+|...+..|+++-|..+|.++-+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 45678999999999999999999999988643
No 409
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=51.30 E-value=59 Score=20.37 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHH----HHHHHhccc-----------CC-Ccc--cHHHHHHHHHHHHH
Q 033417 22 AIAALKESAAIELKEKGNEYVKKGKKHYYDAIDC----YTRAINQNV-----------LS-DSE--NSVLYANRAHVNLL 83 (119)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~----~~~al~~~~-----------~~-~~~--~~~~~~~~a~~~~~ 83 (119)
.+...+|+.+.+|-.++...+..| +.-.|..+ |.+.|+... +. .|+ .-.+...++.+-..
T Consensus 27 ~vaa~~P~ss~aWA~LAe~al~~g--~~v~AYAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal~aLa~AA~~ 104 (129)
T PF11349_consen 27 EVAAAHPASSLAWAALAEEALAAG--RPVTAYAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRALAALARAAQA 104 (129)
T ss_pred HHHHHCCCchHHHHHHHHHHHhCC--CchhhhhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHHHHHHHHHHH
Confidence 455678999999999999999888 66666554 666776532 22 232 23445555666677
Q ss_pred hcCHHHHHHHHHHHHHhCCCcH
Q 033417 84 LGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+|.-+|+..+.+-..+.+|.-.
T Consensus 105 IGE~dE~~Rc~~~L~Dsdp~A~ 126 (129)
T PF11349_consen 105 IGETDEYDRCRQFLRDSDPEAA 126 (129)
T ss_pred hCChhHHHHHHHHHHhCCHHhH
Confidence 8999999887777766776543
No 410
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=50.99 E-value=75 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhCC
Q 033417 87 YRRALTDTEEALKLCP 102 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p 102 (119)
-.-.+..|+.+...+|
T Consensus 149 R~Htl~h~~H~~~~dp 164 (193)
T PF12925_consen 149 RQHTLRHFEHLRMVDP 164 (193)
T ss_dssp HHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhcCH
Confidence 3344445555555544
No 411
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=49.85 E-value=53 Score=19.39 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
--++..+...+....+.| +|++|...+.++=+
T Consensus 11 aG~Ars~~~eAl~~a~~~--~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREG--DFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 345777777788888888 88888877777643
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.05 E-value=58 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
....|+.+++.| +|++|...|-+.|..
T Consensus 371 ~~kYgd~Ly~Kg--df~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 371 HRKYGDYLYGKG--DFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHccc
Confidence 444555555555 555555555555443
No 413
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.83 E-value=26 Score=27.44 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=14.1
Q ss_pred HHhcCHHHHHHHHHHHHHhCCC
Q 033417 82 LLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~ 103 (119)
-.+|-++++..++++++.++|.
T Consensus 402 ~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 402 DALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhHHHHHHHHHHHHhccCCh
Confidence 3456667777777777776664
No 414
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=48.82 E-value=53 Score=19.48 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
--++......+....+.| +|++|-..+.++=+
T Consensus 12 aG~Ars~~~eAl~~a~~g--~fe~A~~~l~ea~~ 43 (97)
T cd00215 12 AGNARSKALEALKAAKEG--DFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 445777788888888888 88888888777643
No 415
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=48.81 E-value=52 Score=19.59 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
+--++......+....+.| +|++|-..+.++=+
T Consensus 13 ~aG~Ars~~~eAl~~a~~g--dfe~A~~~l~eA~~ 45 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAG--DFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 3456788888888889988 89999888777643
No 416
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.77 E-value=50 Score=28.58 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=61.8
Q ss_pred HHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 22 AIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..-.++|+.+..+..++..+.+.| ++++|+..-.++.-+.-+ ..|+....|.+++...+..++...|+..+.++
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~--d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLG--DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhc--chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 334467889999999999999999 899999987777655322 35777888999998888888888888888887
Q ss_pred HHh
Q 033417 98 LKL 100 (119)
Q Consensus 98 l~l 100 (119)
+.+
T Consensus 1042 ~~l 1044 (1236)
T KOG1839|consen 1042 LKL 1044 (1236)
T ss_pred HHh
Confidence 765
No 417
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.43 E-value=27 Score=26.66 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+.|.|+-.++++++|+..|+++|.
T Consensus 26 V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 26 VEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHhhcchhhhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 418
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=48.24 E-value=86 Score=21.37 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----cHHHHHHHHhcccC
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT----NVKVVILCSGSHPN 117 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~a~~~~~ 117 (119)
=+++.+.+.+|..|. ..+.++++..+-+++++.+. +++.+..++.++++
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 366788888877665 67899999999999997543 57888888877654
No 419
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=47.63 E-value=53 Score=22.16 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 70 NSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+++|..+|.|..++|+..+|+.+..++.+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 478999999999999999999999988764
No 420
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.12 E-value=67 Score=19.79 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=27.5
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
....+.+|..-|..+...|++.+|...++++|
T Consensus 95 G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 95 GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 56778899999999999999999999998875
No 421
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.74 E-value=66 Score=26.78 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=43.1
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCc
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALK-LCPTN 104 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-l~p~~ 104 (119)
-+.+++.. .|+-|+..-.. ... ++ ....++..-|.-+++.|++++|+..|-+++. ++|..
T Consensus 341 L~iL~kK~--ly~~Ai~LAk~-~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 341 LDILFKKN--LYKVAINLAKS-QHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHHHHhh--hHHHHHHHHHh-cCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 35566655 79999886544 222 22 3356777778888999999999999999987 56644
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.47 E-value=68 Score=21.00 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS 68 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~ 68 (119)
+...+..++.....| ++..+...+..+...| +.++|.....++..+ -|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G--~~~eA~~~~~~~~~l----yP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLG--DPEEARQWLARARRL----YP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CC
Confidence 344445556666667 5788888899999999 899999999999998 77
No 423
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.88 E-value=40 Score=24.38 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=71.3
Q ss_pred CCCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH------H
Q 033417 9 SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN------L 82 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~------~ 82 (119)
.+...++..+-++.+..-+|+.-..|..+-.++-.--+.+|..-+....+.++. ++.+...|..|-.|. .
T Consensus 86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~----DsrNyH~W~YR~~vl~~ie~~~ 161 (328)
T COG5536 86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDS----DSRNYHVWSYRRWVLRTIEDLF 161 (328)
T ss_pred chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcc----cccccceeeeEeeeeecchhhc
Confidence 344556777788888888999999888877776544222677777778888888 777777666665544 3
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 83 LLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
....+...+++...+|..|+.|..||..+
T Consensus 162 N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 162 NFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred cchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 33445666777888899999998888765
No 424
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=45.66 E-value=80 Score=26.72 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=46.6
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHH------HHHHHhccc----------------CC--Cc---ccHHHHHHHH
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDC------YTRAINQNV----------------LS--DS---ENSVLYANRA 78 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~------~~~al~~~~----------------~~--~~---~~~~~~~~~a 78 (119)
++|.....+.++....|.... +|++|+.. |+.|+.+|. .. .| +...++-.+|
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~-qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQ-QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 344444455555555554443 78888755 566666642 11 12 2345788899
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 033417 79 HVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~a 97 (119)
.+.++.|.|..|-.-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999998888775
No 425
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=45.55 E-value=1.2e+02 Score=25.67 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-----CHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-----NYRR 89 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-----~~~~ 89 (119)
++...++++.. -|.-+..|..++.+|.+.| +|++-+.+|.-|++. -|..|.+-.-+-++-+++. +-..
T Consensus 537 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (932)
T PRK13184 537 QALSEFSYLHG-GVGAPLEYLGKALVYQRLG--EYNEEIKSLLLALKR----YSQHPEISRLRDHLVYRLHESLYKHRRE 609 (932)
T ss_pred HHHHHHHHhcC-CCCCchHHHhHHHHHHHhh--hHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432 3556777888999999999 999999999999998 5555554444444444432 2334
Q ss_pred HHHHHHHHHHhCCCc
Q 033417 90 ALTDTEEALKLCPTN 104 (119)
Q Consensus 90 A~~~~~~al~l~p~~ 104 (119)
|....--++.+-|..
T Consensus 610 ~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 610 ALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHHHhCccc
Confidence 444444455555543
No 426
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=43.89 E-value=31 Score=15.04 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|..+-.++.+.|+++.|...+++-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355556677777788877777776443
No 427
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=43.56 E-value=42 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH
Q 033417 49 YYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
...|+.++.+|..- ++|..|.++|.++..+|+.
T Consensus 334 ~~~Al~yL~kA~d~------ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQDE------DDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc------CChhHHHHHHHHHhhhhcc
Confidence 45566666666553 6788889999999888864
No 428
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=42.56 E-value=66 Score=23.26 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccc-CC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 49 YYDAIDCYTRAINQNV-LS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~-~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
...|..+...||.+.. +. ......+-+.++..++.+.+|+-|..+|..|+.+-
T Consensus 55 ~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~ 109 (368)
T COG5091 55 MENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLY 109 (368)
T ss_pred hhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 4677888888886621 11 22334566778889999999999999999998863
No 429
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=42.49 E-value=35 Score=15.17 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=7.6
Q ss_pred HHHHHHHHhCCCcHHHH
Q 033417 92 TDTEEALKLCPTNVKVV 108 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~ 108 (119)
.....++..+|.+..+|
T Consensus 4 ~~~~~~l~~~pknys~W 20 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAW 20 (31)
T ss_dssp HHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHCcccccHH
Confidence 33444444444444444
No 430
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.70 E-value=82 Score=20.32 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.8
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHH
Q 033417 76 NRAHVNLLLG-NYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 76 ~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.+|..+...| ++.++..++-.||.+.|.-.+.+
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 4577788888 99999999999999988654443
No 431
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=41.69 E-value=78 Score=19.03 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
+--++......+....+.| +|++|-..+.++=+
T Consensus 16 ~aG~Ars~~~eAl~~ak~g--df~~A~~~l~eA~~ 48 (104)
T PRK09591 16 HSGNARTEVHEAFAAMREG--NFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 4556888888899999988 89999888887744
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.66 E-value=57 Score=17.42 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.-+...-..++.+|++++|.++.++..+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455567788999999988887654
No 433
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.02 E-value=78 Score=18.83 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.......|..-+..|++..|.....++-+..+..+-.|...|++
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~A 102 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARA 102 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 33445667888889999999999999988766666666655543
No 434
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.69 E-value=2e+02 Score=23.04 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
...+..+..++..+-..+ ..++|-.+|++.+.. +|+ ..++.-|.-+.+.|-..+|....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVN--ETERAYALYETLIAQ----NND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred chhHHHHHHHhhhhhhhh--hhHhHHHHHHHHHHh----CCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 445666777777777777 789999999999988 877 445555666666676666666555
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.64 E-value=76 Score=24.02 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
-+.+...++..|-+++-.+ +|.+|++.|...+..
T Consensus 160 ~~~~is~~YyvGFaylMlr--RY~DAir~f~~iL~y 193 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLR--RYADAIRTFSQILLY 193 (404)
T ss_pred cchheehHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3557788999999999988 899999999998865
No 436
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.06 E-value=1.2e+02 Score=20.53 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=31.1
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+...++.+.| .|++|.+.+.+...- |+.......+..+-...+.+..-+.
T Consensus 116 ~aV~VCm~~g--~Fk~A~eiLkr~~~d-----~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 116 QAVAVCMENG--EFKKAEEVLKRLFSD-----PESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHHhcC--chHHHHHHHHHHhcC-----CCchhHHHHHHHHHHccccccHHHH
Confidence 4455677888 899999999998773 5555544444444333344444443
No 437
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.05 E-value=40 Score=14.93 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHHh
Q 033417 73 LYANRAHVNLLL----GNYRRALTDTEEALKL 100 (119)
Q Consensus 73 ~~~~~a~~~~~l----~~~~~A~~~~~~al~l 100 (119)
+.+.+|.++..- .+..+|+..++++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 345556665431 2667777777766543
No 438
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.84 E-value=1.4e+02 Score=21.06 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH-----------
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----------- 83 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----------- 83 (119)
+++.......+.+|.++..-.-.-..+.-.| +|++|...++-+-.+.|. ...-+.+|.+.-.|...
T Consensus 19 dai~~a~~qVkakPtda~~RhflfqLlcvaG--dw~kAl~Ql~l~a~l~p~-~t~~a~lyr~lir~ea~R~evfag~~~P 95 (273)
T COG4455 19 DAIGLARDQVKAKPTDAGGRHFLFQLLCVAG--DWEKALAQLNLAATLSPQ-DTVGASLYRHLIRCEAARNEVFAGGAVP 95 (273)
T ss_pred HHHHHHHHHHhcCCccccchhHHHHHHhhcc--hHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3445555666678888877777778888888 999999999988888333 22234455554444322
Q ss_pred --hc-CHHHHHHHHHHHHHhCCC
Q 033417 84 --LG-NYRRALTDTEEALKLCPT 103 (119)
Q Consensus 84 --l~-~~~~A~~~~~~al~l~p~ 103 (119)
+| ...+=+....+++.++.+
T Consensus 96 gflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 96 GFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred CCcCCCCHHHHHHHHHHHhcccC
Confidence 22 444555555556655543
No 439
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=1.6e+02 Score=21.76 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+.++-..+.. ++++|+..|.+.+..... .-.+......+++..|...|++..
T Consensus 7 le~a~~~v~~~--~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSN--DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhh--hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 45667777777 899999999998866211 112334456778899998887643
No 440
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.23 E-value=67 Score=17.25 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=34.5
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH--HHHHHHHHHHHHhcCHHHHHHH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS--VLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
...|..+++.| +|=+|-+.++......+....... .+....|..+.+.|+..-|...
T Consensus 3 ~~~~~~l~n~g--~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAG--DFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCC--CHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45678889998 899999999999865222111112 2333334455567777776653
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.84 E-value=61 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..+|.+....|+|++++...++++..+|+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 45667777777788888877777777664
No 442
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.65 E-value=1.3e+02 Score=20.42 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
|=-..+--.+|...++.| +|..|...|.+...- ...|..-.+|+.+++.+
T Consensus 164 ~mR~sArEALglAa~kag--d~a~A~~~F~qia~D-----a~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAG--DFAKAKSWFVQIAND-----AQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhcc--chHHHHHHHHHHHcc-----ccCcHHHHHHHHHHHHH
Confidence 434445567888999999 999999999987663 45566667888887654
No 443
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=37.63 E-value=74 Score=17.54 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTR 58 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~ 58 (119)
..+.+.-+.+|..| +|++|...-..
T Consensus 7 ~l~~~~F~~l~~~g--~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQG--QYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 44677888999999 89999887654
No 444
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=37.47 E-value=2.2e+02 Score=22.87 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 39 NEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+...+ |..-|.+.|+-++.. -++.+..-..-..-+..+++-..+...|++++.-
T Consensus 409 mEy~csk--D~~~AfrIFeLGLkk----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 409 MEYYCSK--DKETAFRIFELGLKK----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhcC--ChhHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4455666 899999999999998 8888877666667777888888888888888875
No 445
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=37.36 E-value=1.6e+02 Score=22.32 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=43.7
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcc-cC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQN-VL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~-~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
-..|++.+ .++-+-..++...... |. +...-...++.+|.+++-..++.+|...+.+|....|+
T Consensus 184 ~~iY~Rl~--~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 184 FQIYLRLG--RFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHhc--cHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 34566777 5665554443322210 00 12344678899999999999999999999999988876
No 446
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=37.22 E-value=2.1e+02 Score=22.67 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=43.8
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHH---hc-----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAI---NQ-----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al---~~-----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.....+...| .-.++++++-.+. +. .++--|....+|...+.||...|.+.+|...+++++.
T Consensus 156 ~ICr~Lm~~G--~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 156 TICRHLMTAG--HSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHcc--chHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4444555556 5667776654432 11 1222578889999999999999999999999998874
No 447
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.96 E-value=1.1e+02 Score=19.53 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+|..++..|+++++..++-.||.+.|...+.+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 4578889999999999999999999988766554
No 448
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=36.61 E-value=28 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.6
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 033417 79 HVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~ 96 (119)
..|+.+|+|++|++.|+.
T Consensus 111 k~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHhcCcHHHHHHHccC
Confidence 467889999999999887
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.68 E-value=2.8e+02 Score=23.75 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-----------------------------------C------
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-----------------------------------S------ 66 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------------------------~------ 66 (119)
-++...-.+.|-.+...| .|.+|++.|..+|-..|- .
T Consensus 988 l~~l~~kl~~gy~ltt~g--Kf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~ 1065 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEG--KFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQ 1065 (1202)
T ss_pred HHHHHHHHHHHHhhhccC--cHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHH
Confidence 334556678888899999 699999999887643211 0
Q ss_pred -------------CcccHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 67 -------------DSENSVLYANR-AHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 67 -------------~~~~~~~~~~~-a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.|..-.+-... -.+.++++++..|-..+++.+++-|..+.|-
T Consensus 1066 ~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1066 QLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 11111111111 2357789999999999999999998666554
No 450
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=35.67 E-value=2.5e+02 Score=23.06 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 55 CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 55 ~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.|+.++..+.+-.-+...+|-.-|.+.++++++..|..-|++++++.
T Consensus 571 rYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 571 RYQLAVEMCKKCGIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 36666666444334455678888999999999999999999999886
No 451
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.50 E-value=1.3e+02 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+...+..++-.|.+..-++ +|..|.+++.+++..
T Consensus 243 nne~ARY~yY~GrIkaiql--dYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 243 NNEWARYLYYLGRIKAIQL--DYSSALEYFLQALRK 276 (493)
T ss_pred cHHHHHHHHHHhhHHHhhc--chhHHHHHHHHHHHh
Confidence 3467888999999998888 999999999999999
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.84 E-value=2e+02 Score=21.67 Aligned_cols=68 Identities=9% Similarity=-0.076 Sum_probs=47.0
Q ss_pred cHHHHHHHHH--HhHHHHHhchHhHHHHHHHHHHHHhcccCC-CcccHHHHHHHHHHHHH--hcCHHHHHHHHHH
Q 033417 27 KESAAIELKE--KGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLL--LGNYRRALTDTEE 96 (119)
Q Consensus 27 ~~~~~~~~~~--~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~ 96 (119)
+|-......+ .+..+|+.+ +|..|...|.+++...+.+ .......+..++.+|.. .-++++|...++.
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~--dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAF--DYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4444444444 556889988 9999999999998772221 22345667777777775 4568899888884
No 453
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.72 E-value=2.3e+02 Score=22.42 Aligned_cols=64 Identities=14% Similarity=-0.073 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-----CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-----DSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
....+...+...+-.+ +|..|....+.....+.+. ..-.+.+++-.|..+...|+.+.|...|.
T Consensus 360 ~~~~~~y~~~~~~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRG--DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3445667888888888 8999988888776652211 22347788889999999999999999998
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.64 E-value=1.9e+02 Score=21.51 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=48.1
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
......+...| +--++....+...|...|. ....+.+|..+|.+.-..|.+++.|..|.+|+.....
T Consensus 106 lsECl~Li~eG-cp~eei~~~L~~li~~IP~-A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 106 LSECLNLIEEG-CPKEEILATLSDLIKNIPD-AKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 33444555555 2345666777777766444 3456788999999999999999999999999987543
No 455
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=34.37 E-value=94 Score=17.80 Aligned_cols=61 Identities=13% Similarity=-0.060 Sum_probs=43.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
....+.+.|....+.| -.++|-..+.-.=.+ -|+.......-+..++.+|+..+|+.....
T Consensus 5 ~~~L~VEaalAavNH~--L~~ea~ailnalP~l----i~D~~~r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 5 ANKLVVEAALAAVNHS--LPKEAHSILNALPQI----IPDKKDRLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHHHHHccC--cHHHHHHHHHhcccc----cCCHhHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3445666777777777 677777666554445 677777777788999999999999886554
No 456
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.34 E-value=2.4e+02 Score=22.56 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.++-.++.+++.++...| .++-....++.++. +=+++..-..++..|.+ ++...+...|.+++.
T Consensus 96 ~e~kmal~el~q~y~en~---n~~l~~lWer~ve~----dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 96 GESKMALLELLQCYKENG---NEQLYSLWERLVEY----DFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred cchHHHHHHHHHHHHhcC---chhhHHHHHHHHHh----cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 445678889999998877 57888889999999 77888877777776665 888889999988875
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.56 E-value=1.8e+02 Score=21.92 Aligned_cols=56 Identities=18% Similarity=0.055 Sum_probs=37.8
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+.-....++. +..+-|..-..++++ +|+.+.+|..++.-- .....+|...++++++
T Consensus 189 eIMQ~AWRER--np~~RI~~A~~ALeI----N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 189 EIMQKAWRER--NPPARIKAAYQALEI----NNECATAYVLLAEEE--ATTIVDAERLFKQALK 244 (556)
T ss_pred HHHHHHHHhc--CcHHHHHHHHHHHhc----CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence 3344455665 788889999999999 999999988776532 2334455555555554
No 458
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=33.16 E-value=1.7e+02 Score=20.46 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=50.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---C---Cc----ccHHHHHHHHHHHHHhcCHHHH---HHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---S---DS----ENSVLYANRAHVNLLLGNYRRA---LTDTEE 96 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~---~~----~~~~~~~~~a~~~~~l~~~~~A---~~~~~~ 96 (119)
.+..+++-|...+..+ .+++.|+..++++.++... . .| ....++..++.+++..+.++.. ....+.
T Consensus 34 La~~~yn~G~~l~~~~-~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKK-DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4566778888888755 1699999999999988422 1 11 2245667778888887776433 333333
Q ss_pred HHHhCCCcHHHH
Q 033417 97 ALKLCPTNVKVV 108 (119)
Q Consensus 97 al~l~p~~~~a~ 108 (119)
+-.-.|+.+..+
T Consensus 113 l~~e~~~~~~~~ 124 (278)
T PF08631_consen 113 LESEYGNKPEVF 124 (278)
T ss_pred HHHhCCCCcHHH
Confidence 333457666665
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.66 E-value=1.1e+02 Score=20.75 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=25.3
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.+.++.|.+++|.+.+++... +|++.+-...+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL 150 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKL 150 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHH
Confidence 356789999999999999988 88776654333
No 460
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=32.00 E-value=1.2e+02 Score=24.22 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..++.+|.+||.....- +....--|...|-.+++.++|.+|+..+..+-+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566676666541110 112233456678889999999999998887654
No 461
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.90 E-value=1.4e+02 Score=21.86 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=39.9
Q ss_pred CChhhHHHHHHHHHhcHHHHH----HHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 12 KTESEKADLDAIAALKESAAI----ELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
-++++...+.+...+.+...+ ++.+.-.+.|+.+ +|++-...|.+.+..
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~--~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG--NYKEMMERYKQLLTY 94 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHH
Confidence 466788888888888776554 5788888999999 899999999988755
No 462
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=2.2e+02 Score=21.18 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHhc
Q 033417 48 HYYDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
+|++|+..|..+++.
T Consensus 25 nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 25 NYEEALRLYQNALEY 39 (439)
T ss_pred chHHHHHHHHHHHHH
Confidence 566666666666554
No 463
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=30.94 E-value=1e+02 Score=17.28 Aligned_cols=27 Identities=30% Similarity=0.671 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTR 58 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~ 58 (119)
.+..+..-|..++..| |+..|+..+.=
T Consensus 34 mA~~Y~~D~~~fl~~g--D~v~Ala~~sY 60 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKG--DYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 4677777788888877 77777776543
No 464
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=30.82 E-value=1.3e+02 Score=18.45 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.3
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+--++..+.-.+....+.| +|++|-..+.++-+.
T Consensus 26 ~~aG~ArS~~~eAl~~Ak~g--dfe~A~~~l~eA~e~ 60 (115)
T PRK10454 26 INSGQARSLAYAALKQAKQG--DFAAAKAMMDQSRMA 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35567888889999999999 899999888877543
No 465
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.61 E-value=4.3e+02 Score=25.19 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+...++.|.+.+...-+.| .++.|-...-.|.+. . .+.++..+|..+-..|+...|+...++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~----r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAG--HLQRAQNALLNAKES----R--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhc----c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4556788888898888888 899998888888777 3 68889999999999999999999999999764
No 466
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.53 E-value=45 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..|.+|+.+++|.+|+..|-.+|-
T Consensus 276 Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988764
No 467
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=29.88 E-value=3.6e+02 Score=23.19 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=42.0
Q ss_pred hHHHHHhchHhHHHHHHHHHHHHhcccC-----------------CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 38 GNEYVKKGKKHYYDAIDCYTRAINQNVL-----------------SDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
|.-+-..| +.+.|+..|..|-+.-.- ....+..+-+.+|.-|...|++.+|+..|.+|
T Consensus 919 gqYlES~G--emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 919 GQYLESVG--EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHhccc--chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455566 899999999988655211 13445566777888999999999999888764
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=29.04 E-value=67 Score=14.49 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 033417 87 YRRALTDTEEALK 99 (119)
Q Consensus 87 ~~~A~~~~~~al~ 99 (119)
+.+|+..++++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 469
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=28.73 E-value=2.2e+02 Score=20.37 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLL----------------------GNYRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l----------------------~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
.|.+..++..+|.++... ...+.|..++.+++.++|+.+-++..+-
T Consensus 73 ~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 73 CPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 777777777777766542 1247888899999999999888776653
No 470
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=28.55 E-value=1.4e+02 Score=25.87 Aligned_cols=56 Identities=27% Similarity=0.167 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
....+..+..|+.+...| .|.+|+..|..|+...... .=+.+.++-..+.|.+-++
T Consensus 239 r~~gR~~k~~gd~~LlaG--~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAG--RWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhhhHHHHcC--CHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 345777888999999999 8999999999999874332 1233455555555555443
No 471
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=28.52 E-value=3.1e+02 Score=21.96 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 54 DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 54 ~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
..|+..|.. -|.....|..-|..-.++|..+.++..|+++++-=|-+...
T Consensus 66 ~~y~~fL~k----yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Svdl 115 (577)
T KOG1258|consen 66 EVYDIFLSK----YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDL 115 (577)
T ss_pred HHHHHHHhh----CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 335555544 56666666666666666666666666666665554443333
No 472
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.49 E-value=84 Score=18.88 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
...+.+++..|+..| .+++|++.+.+...
T Consensus 39 ~~~~~eL~~lY~~kg--~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKG--LHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccC--ccHHHHHHHHHHhc
Confidence 445778888999888 89999999988766
No 473
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=26.71 E-value=1.7e+02 Score=22.59 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCC
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALKLCPT 103 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~ 103 (119)
+..|-.+.-.+ +|.+|++.|...|.. -......+..++.++-..++ ++.--....-++.+.|.
T Consensus 276 Y~VGFayLmmr--ryadai~~F~niLly----Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 276 YQVGFAYLMMR--RYADAIRVFLNILLY----IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred eehhHHHHHHH--HHHHHHHHHHHHHHH----HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCch
Confidence 57788888888 899999999888766 33334444555555555443 44444445556666663
No 474
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=26.51 E-value=1.8e+02 Score=18.66 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHH-hcccC--CCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAI-NQNVL--SDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al-~~~~~--~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
........++..++.| +...|...+.-+- ++... .-| ........++..++..|++.+|-..+..+++
T Consensus 74 ~~~~ai~~a~~~l~~g--~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKG--DKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4566778889999999 8999999887652 11000 012 1234456788999999999999999988875
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.51 E-value=1.5e+02 Score=20.61 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHH---------HhchHhHHHHHHHHHHHHhc
Q 033417 28 ESAAIELKEKGNEYV---------KKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~---------~~g~~~~~~A~~~~~~al~~ 62 (119)
+-.+..++..|..+. ..+ +...|+.++++|+.+
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~--~l~~Al~~L~rA~~l 207 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAE--TLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcc--cHHHHHHHHHHHHHh
Confidence 334555667777674 334 688999999999999
No 476
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.16 E-value=3e+02 Score=21.07 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al 60 (119)
+...|..+|......| +++-|..+|.++=
T Consensus 346 ~~~~W~~Lg~~AL~~g--~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQG--NIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTT--BHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHhhc
Confidence 4668999999999999 9999999998853
No 477
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.01 E-value=3.5e+02 Score=21.71 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
..+++....+.-+.. ....+...+..|..+-..+..+.|-..|++.+.-+|++.
T Consensus 23 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (578)
T PRK15490 23 KLAQAVALIDSELPT----EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA 76 (578)
T ss_pred hHHHHHHHHHHhCCc----cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch
Confidence 355555555555544 556666677788888889999999999999999999843
No 478
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.45 E-value=4.1e+02 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTR 58 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~ 58 (119)
.-.++.+.|....... .|++|...|..
T Consensus 795 ~e~A~r~ig~~fa~~~--~We~A~~yY~~ 821 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMM--EWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 3455666666666655 57777666655
No 479
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.26 E-value=2.7e+02 Score=20.15 Aligned_cols=66 Identities=15% Similarity=-0.009 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.......+..++..+ ..++|+..++..+...+. ..+.......++.++...|.++-|...+.++.+
T Consensus 213 ~~~~~~eA~~l~~~~--gl~~Al~~L~~~~~~~~s-~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 213 WEELREEARALAAEG--GLEAALQRLQQRLAQARE-PRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556677888887 699999999987554111 122334445567777788999999999998765
No 480
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=24.75 E-value=1.6e+02 Score=17.33 Aligned_cols=30 Identities=23% Similarity=0.105 Sum_probs=19.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+......+...+..| .|+.|.-...++++.
T Consensus 4 A~~~l~~A~~~~~~g--~y~~a~f~aqqavEk 33 (113)
T smart00748 4 AKRFLEAAKLDLEKG--FYDLAAFLSQQAAEL 33 (113)
T ss_pred HHHHHHHHHHHHHcC--CchHHHHHHHHHHHH
Confidence 444555666666777 777777666666654
No 481
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.70 E-value=70 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
...++.+..+|....++|+.++|=..|..|++++-.-+++|..=|.-..
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999888888877665443
No 482
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=24.65 E-value=1.1e+02 Score=17.35 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 77 RAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...-....|+++.|...-+++..+
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHH
Confidence 334445567777777777666543
No 483
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=24.37 E-value=1.7e+02 Score=17.70 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=24.2
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHH
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al 60 (119)
++.-++....-.|..+.+.| +|++|-....++=
T Consensus 14 ~~aG~ArS~~~eAl~~Ak~g--~f~~A~~~i~eA~ 46 (105)
T COG1447 14 LHAGNARSKAYEALKAAKEG--DFEEAEELIQEAN 46 (105)
T ss_pred HHcccHhHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 34456777777888888888 8888887777664
No 484
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=24.21 E-value=1.2e+02 Score=26.31 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..-.+|..++..|+|.+|+..|.+++.+
T Consensus 244 ~~k~~gd~~LlaG~~~dAl~~y~~a~~~ 271 (1185)
T PF08626_consen 244 LQKVLGDLYLLAGRWPDALKEYTEAIEI 271 (1185)
T ss_pred hhhhhhhHHHHcCCHHHHHHHHHHHHHH
Confidence 3445688889999999999999999875
No 485
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.84 E-value=2.4e+02 Score=21.19 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+++.+...|...+..-..++..-...| ||..|++.+-.||.+
T Consensus 360 AEFEdiM~RNraiSSSAIsrAvsdASaG--Dy~~AiETllTAI~l 402 (498)
T KOG4849|consen 360 AEFEDIMTRNRAISSSAISRAVSDASAG--DYKGAIETLLTAIQL 402 (498)
T ss_pred HHHHHHHhhcchhhHHHHHHHhcccccc--cchhHHHHHHHHHHH
Confidence 3566666667666666677777777778 999999999999887
No 486
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=23.51 E-value=2e+02 Score=18.12 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=17.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 77 RAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+.-....|+|-+|+..++..+..+
T Consensus 96 ~~~~~v~~g~~Y~ALK~~R~Li~~E 120 (131)
T PRK12791 96 AINNHILNGDLYKALKELRKLIARE 120 (131)
T ss_pred HHHHHHhCCCHHHHHHHHHHhHHHH
Confidence 3444667888888888888877653
No 487
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=23.30 E-value=1.9e+02 Score=22.07 Aligned_cols=53 Identities=17% Similarity=0.070 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+.+++.+.++..|..-|++..+|+.+|.-.+..|+..+|....++ ...||+++
T Consensus 336 gs~YL~~i~~q~peSi~E~ERiwFALAAYNmG~~hm~daR~lt~~-~g~nPd~W 388 (473)
T COG4623 336 GSRYLQDIMSQVPESIPEDERIWFALAAYNMGYGHMQDARRLTKK-TGGNPDSW 388 (473)
T ss_pred HHHHHHHHHHhCcccCCchhHHHHHHHHhccCHHHHHHHHHHHHh-cCCCchhH
Confidence 345566666666666778888999888888778888888775544 56788764
No 488
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.10 E-value=2.1e+02 Score=18.22 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
+..+.+++.-..++..- +.+.|...|...++. .|+...++..+-...
T Consensus 74 eY~EaLRDfq~~~iaKl--e~e~Ae~vY~el~~~----~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 74 EYSEALRDFQCSWIAKL--EPENAEQVYEELLEA----HPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHH----CcchHHHHHHHHHcc
Confidence 35666666666666655 789999999999999 888888777665443
No 489
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=3.7e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
-+-...++|.++-..+ ++++|+..|+++|.+.
T Consensus 21 ~A~~~V~~gl~~dE~~--~~e~a~~~Ye~gl~~i 52 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVN--DWENALAMYEKGLNLI 52 (560)
T ss_pred HHHHHHHhhcchhhhc--CHHHHHHHHHHHHHHH
Confidence 4777889999999988 9999999999999874
No 490
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.62 E-value=3.1e+02 Score=23.04 Aligned_cols=42 Identities=5% Similarity=-0.062 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...-.++.++|..+..+..|++|.++|.++-... +..+.+|+
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-~~~ecly~ 834 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-NQIECLYR 834 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-hHHHHHHH
Confidence 3345789999999999999999999998865432 23444443
No 491
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.26 E-value=4.4e+02 Score=21.61 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHH------------HHHH-HHHHHhcCHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLY------------ANRA-HVNLLLGNYRR 89 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~------------~~~a-~~~~~l~~~~~ 89 (119)
..+....|.++|......+ ++..|.+++.++-++..- ....+...+ .|.| .|++..|++++
T Consensus 662 e~~s~~Kw~~Lg~~al~~~--~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAG--ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEE 739 (794)
T ss_pred hhcchHHHHHHHHHHhhcc--cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHH
Confidence 4456788999999999999 899999999998665110 011222222 2222 26667788877
Q ss_pred HHHHHHH
Q 033417 90 ALTDTEE 96 (119)
Q Consensus 90 A~~~~~~ 96 (119)
+++.+..
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 7765443
No 492
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.12 E-value=1.5e+02 Score=25.93 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=16.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 033417 78 AHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|..|.+.|+.++|+..|+.+..
T Consensus 959 al~Ye~~GklekAl~a~~~~~d 980 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhcc
Confidence 4566677888888888877643
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.86 E-value=1.7e+02 Score=18.25 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
....+.+|..-|..+...|++.+|.+.|+.
T Consensus 95 G~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 95 GTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456678888889999999999999988864
No 494
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=21.76 E-value=2.6e+02 Score=18.64 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
..++..|.+.|=|.+|+...-+...-+|++..
T Consensus 135 ~e~~~~YAe~GiWyDaL~~La~lr~~~p~d~~ 166 (189)
T PF06051_consen 135 LERAALYAENGIWYDALATLAELRRSQPNDPQ 166 (189)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHcCCCChH
Confidence 45677777788888888888877777777543
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.50 E-value=2.4e+02 Score=18.27 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=15.7
Q ss_pred HHHHhchHhHHHHHHHHHHHHhc
Q 033417 40 EYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 40 ~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+.+.| +|+.++..|.++-.+
T Consensus 95 ~~i~~~--dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 95 ECIKKG--DYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHcC--cHHHHHHHHHHHHHH
Confidence 345566 888888888888766
No 496
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=21.47 E-value=2.1e+02 Score=20.59 Aligned_cols=30 Identities=20% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+++++.+|.+..+.|...+|...+.++..-
T Consensus 286 aEv~L~~AEA~~~~~~~~~A~~~in~vr~r 315 (359)
T cd08977 286 AEVLLLRAEALARLGNGADAIEYLNAVRRR 315 (359)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 567888899999899999999999988753
No 497
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=21.40 E-value=2.8e+02 Score=19.44 Aligned_cols=33 Identities=21% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
++....+.+.+..+++.| ++++|.-.+-.++=+
T Consensus 111 ~~~~~ky~~~A~~~~~~g--~~~~A~~~LG~a~Hy 143 (241)
T smart00770 111 KDTGRKYFKLALNEWKKG--NYKKAFFYLGRACHY 143 (241)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 456788899999999999 899999988887644
No 498
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=2.2e+02 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+...|..++.-++|..|.+.|.+.
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4444555555555555555555443
No 499
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=20.70 E-value=3.9e+02 Score=20.31 Aligned_cols=28 Identities=14% Similarity=-0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+++..|......|++.+||..++.+..
T Consensus 297 ~A~~~~g~d~~e~~k~GeaIa~L~~A~~ 324 (413)
T cd09245 297 LACKFLGIDAGENGKVGEAIGWLRAAKK 324 (413)
T ss_pred HHHHHHHHhhHhcCCHHHHHHHHHHHHH
Confidence 3445555555667899999999999877
No 500
>TIGR02863 spore_sspJ small, acid-soluble spore protein, SspJ family. RL J Bacteriol. 1998 Dec;180(24):6704-12.
Probab=20.47 E-value=1.4e+02 Score=14.98 Aligned_cols=22 Identities=18% Similarity=0.515 Sum_probs=11.8
Q ss_pred CccccCCCCCCCChhhHHHHHH
Q 033417 1 MALWMDAESEPKTESEKADLDA 22 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (119)
|++|+.+.....+++....++.
T Consensus 1 M~ifF~kdk~~~seKd~n~v~g 22 (47)
T TIGR02863 1 MGIFFNKDKGKKSEKDKNAIQG 22 (47)
T ss_pred CcchhhcccccchhhhHHHHHH
Confidence 6656666555555555444443
Done!