Query 033417
Match_columns 119
No_of_seqs 136 out of 1884
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 22:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1.7E-20 5.9E-25 115.7 10.1 89 23-117 5-93 (126)
2 4gco_A Protein STI-1; structur 99.8 1.3E-18 4.3E-23 107.3 11.8 97 13-115 29-125 (126)
3 3gyz_A Chaperone protein IPGC; 99.8 9.2E-19 3.1E-23 111.5 7.6 91 21-117 26-116 (151)
4 4ga2_A E3 SUMO-protein ligase 99.8 3.4E-18 1.2E-22 108.0 9.2 98 13-116 13-110 (150)
5 3urz_A Uncharacterized protein 99.7 1E-16 3.6E-21 105.8 12.9 98 13-116 20-133 (208)
6 4gcn_A Protein STI-1; structur 99.7 3.2E-17 1.1E-21 100.9 8.7 84 27-116 4-94 (127)
7 2vgx_A Chaperone SYCD; alterna 99.7 7.2E-17 2.5E-21 101.8 10.1 93 19-117 9-101 (148)
8 3upv_A Heat shock protein STI1 99.7 1E-16 3.4E-21 97.6 10.0 96 14-115 21-122 (126)
9 4ga2_A E3 SUMO-protein ligase 99.7 1.6E-16 5.3E-21 100.3 9.1 98 13-116 47-145 (150)
10 2xcb_A PCRH, regulatory protei 99.7 1.2E-16 4.3E-21 99.5 8.3 93 19-117 6-98 (142)
11 3gyz_A Chaperone protein IPGC; 99.7 4.1E-16 1.4E-20 99.1 9.9 87 13-105 52-138 (151)
12 2hr2_A Hypothetical protein; a 99.7 3.9E-16 1.3E-20 100.1 9.6 81 30-116 10-113 (159)
13 3rkv_A Putative peptidylprolyl 99.6 5.7E-16 1.9E-20 98.1 8.2 73 27-105 59-131 (162)
14 3upv_A Heat shock protein STI1 99.6 1.6E-15 5.5E-20 92.1 9.8 84 28-117 1-84 (126)
15 3sz7_A HSC70 cochaperone (SGT) 99.6 1.7E-15 5.7E-20 96.1 10.1 95 14-114 28-122 (164)
16 3sz7_A HSC70 cochaperone (SGT) 99.6 1.3E-15 4.3E-20 96.7 9.4 85 27-117 7-91 (164)
17 1zu2_A Mitochondrial import re 99.6 1.8E-15 6.2E-20 96.8 9.8 94 13-112 18-132 (158)
18 2pl2_A Hypothetical conserved 99.6 3.5E-15 1.2E-19 99.0 11.4 98 13-117 100-197 (217)
19 4gyw_A UDP-N-acetylglucosamine 99.6 1.2E-15 4.2E-20 117.3 10.4 96 14-115 26-121 (723)
20 2pl2_A Hypothetical conserved 99.6 1.3E-15 4.3E-20 101.2 8.9 98 13-116 21-129 (217)
21 3rkv_A Putative peptidylprolyl 99.6 1.1E-14 3.8E-19 92.1 12.2 51 67-117 59-109 (162)
22 4gyw_A UDP-N-acetylglucosamine 99.6 2.5E-15 8.5E-20 115.6 10.8 99 13-117 59-157 (723)
23 2h6f_A Protein farnesyltransfe 99.6 2.1E-15 7.3E-20 108.5 9.9 98 13-116 113-211 (382)
24 2l6j_A TPR repeat-containing p 99.6 5.9E-15 2E-19 87.1 10.1 81 30-116 3-89 (111)
25 2h6f_A Protein farnesyltransfe 99.6 9.2E-16 3.2E-20 110.4 7.7 99 13-117 148-246 (382)
26 3k9i_A BH0479 protein; putativ 99.6 1.2E-14 4E-19 87.7 10.7 91 13-109 6-99 (117)
27 2vgx_A Chaperone SYCD; alterna 99.6 5.1E-15 1.8E-19 93.2 9.4 89 13-107 37-125 (148)
28 2xcb_A PCRH, regulatory protei 99.6 4.5E-15 1.5E-19 92.4 8.7 93 13-111 34-126 (142)
29 3vtx_A MAMA; tetratricopeptide 99.6 3.5E-15 1.2E-19 95.7 8.2 93 14-114 90-182 (184)
30 1hxi_A PEX5, peroxisome target 99.6 6.9E-15 2.4E-19 89.7 8.5 84 15-104 35-118 (121)
31 1p5q_A FKBP52, FK506-binding p 99.6 3.3E-15 1.1E-19 105.4 7.8 93 18-116 134-241 (336)
32 3q49_B STIP1 homology and U bo 99.6 8.4E-15 2.9E-19 89.6 8.5 83 28-116 6-88 (137)
33 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.8E-15 9.5E-20 109.7 7.3 96 16-117 253-363 (457)
34 1na3_A Designed protein CTPR2; 99.6 3.9E-14 1.3E-18 80.9 10.5 82 29-116 7-88 (91)
35 1elw_A TPR1-domain of HOP; HOP 99.6 5.8E-14 2E-18 82.9 11.4 97 13-115 20-116 (118)
36 2vyi_A SGTA protein; chaperone 99.6 6.1E-14 2.1E-18 84.1 11.3 98 13-116 28-125 (131)
37 4i17_A Hypothetical protein; T 99.6 1.7E-14 5.7E-19 95.5 9.5 97 14-116 59-164 (228)
38 1hxi_A PEX5, peroxisome target 99.6 3.8E-14 1.3E-18 86.4 10.3 79 33-117 19-97 (121)
39 2lni_A Stress-induced-phosphop 99.6 9.9E-15 3.4E-19 88.2 7.6 99 13-117 32-130 (133)
40 1p5q_A FKBP52, FK506-binding p 99.6 3.5E-14 1.2E-18 100.1 11.4 97 14-116 164-275 (336)
41 3vtx_A MAMA; tetratricopeptide 99.6 4.8E-14 1.6E-18 90.3 10.4 102 14-117 22-153 (184)
42 4i17_A Hypothetical protein; T 99.5 5.8E-14 2E-18 92.8 10.6 98 13-116 23-128 (228)
43 3uq3_A Heat shock protein STI1 99.5 1.8E-13 6.1E-18 90.8 12.5 97 15-117 123-219 (258)
44 4gcn_A Protein STI-1; structur 99.5 1.2E-13 4.2E-18 84.7 10.4 96 13-111 24-122 (127)
45 1na0_A Designed protein CTPR3; 99.5 2.9E-13 9.9E-18 80.4 11.4 98 13-116 25-122 (125)
46 2e2e_A Formate-dependent nitri 99.5 5.8E-14 2E-18 89.7 8.5 99 13-117 26-127 (177)
47 2dba_A Smooth muscle cell asso 99.5 2.8E-13 9.5E-18 83.2 11.3 96 14-115 45-143 (148)
48 2kck_A TPR repeat; tetratricop 99.5 2.2E-14 7.6E-19 84.1 5.8 84 28-117 3-88 (112)
49 2fbn_A 70 kDa peptidylprolyl i 99.5 2E-13 6.8E-18 88.9 10.7 97 14-116 55-167 (198)
50 2fbn_A 70 kDa peptidylprolyl i 99.5 5.9E-14 2E-18 91.4 8.1 87 25-117 32-134 (198)
51 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 8.1E-14 2.8E-18 101.9 9.7 97 14-116 285-396 (457)
52 1a17_A Serine/threonine protei 99.5 4.5E-13 1.5E-17 83.8 11.6 96 13-114 29-124 (166)
53 2c2l_A CHIP, carboxy terminus 99.5 5.6E-14 1.9E-18 96.8 7.6 81 30-116 3-83 (281)
54 2hr2_A Hypothetical protein; a 99.5 1.4E-13 4.8E-18 88.2 8.9 91 13-105 27-136 (159)
55 1xnf_A Lipoprotein NLPI; TPR, 99.5 4E-13 1.4E-17 90.1 11.3 99 13-117 21-123 (275)
56 1ihg_A Cyclophilin 40; ppiase 99.5 6.8E-13 2.3E-17 94.9 13.1 96 14-115 240-351 (370)
57 2xev_A YBGF; tetratricopeptide 99.5 5.4E-13 1.9E-17 80.6 10.8 94 13-112 18-117 (129)
58 3q49_B STIP1 homology and U bo 99.5 2.2E-13 7.6E-18 83.1 9.1 95 13-113 25-124 (137)
59 2vyi_A SGTA protein; chaperone 99.5 5.3E-13 1.8E-17 79.9 10.5 87 25-117 6-92 (131)
60 1elw_A TPR1-domain of HOP; HOP 99.5 6.1E-13 2.1E-17 78.4 10.4 82 30-117 3-84 (118)
61 3urz_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 89.0 9.8 82 30-117 3-100 (208)
62 2lni_A Stress-induced-phosphop 99.5 1.7E-13 5.7E-18 82.7 7.7 85 27-117 12-96 (133)
63 2pzi_A Probable serine/threoni 99.5 5.4E-14 1.8E-18 107.3 6.2 96 14-116 450-545 (681)
64 2pzi_A Probable serine/threoni 99.5 1.1E-13 3.7E-18 105.6 7.8 98 13-116 407-512 (681)
65 4abn_A Tetratricopeptide repea 99.5 5.5E-13 1.9E-17 97.8 11.1 98 13-116 195-303 (474)
66 3ma5_A Tetratricopeptide repea 99.5 9E-14 3.1E-18 81.9 5.6 73 26-104 2-74 (100)
67 4eqf_A PEX5-related protein; a 99.5 6.7E-13 2.3E-17 92.9 11.0 98 13-116 193-292 (365)
68 2kat_A Uncharacterized protein 99.5 4.7E-13 1.6E-17 80.0 8.4 84 15-104 3-86 (115)
69 1a17_A Serine/threonine protei 99.5 1.2E-12 4.1E-17 81.8 10.6 83 29-117 11-93 (166)
70 2dba_A Smooth muscle cell asso 99.4 4.6E-13 1.6E-17 82.2 8.1 84 27-116 24-110 (148)
71 2fo7_A Synthetic consensus TPR 99.4 2E-12 6.8E-17 77.4 10.8 99 13-117 17-115 (136)
72 2vsy_A XCC0866; transferase, g 99.4 4.2E-13 1.4E-17 99.8 9.2 94 16-115 8-101 (568)
73 2if4_A ATFKBP42; FKBP-like, al 99.4 2.1E-13 7E-18 96.3 7.1 83 28-116 176-275 (338)
74 4abn_A Tetratricopeptide repea 99.4 4.6E-13 1.6E-17 98.2 9.2 97 14-117 120-225 (474)
75 3as5_A MAMA; tetratricopeptide 99.4 1.8E-12 6.2E-17 81.7 10.9 98 13-116 58-155 (186)
76 1wao_1 Serine/threonine protei 99.4 8.6E-13 2.9E-17 97.1 10.6 96 13-114 22-117 (477)
77 1elr_A TPR2A-domain of HOP; HO 99.4 5.7E-13 2E-17 79.9 7.9 83 29-117 2-91 (131)
78 1ihg_A Cyclophilin 40; ppiase 99.4 7.2E-13 2.5E-17 94.8 9.7 88 28-117 220-319 (370)
79 2xev_A YBGF; tetratricopeptide 99.4 7.2E-13 2.5E-17 80.0 8.3 80 32-117 3-88 (129)
80 2kc7_A BFR218_protein; tetratr 99.4 1.7E-12 5.8E-17 75.4 9.6 68 35-108 4-72 (99)
81 3mkr_A Coatomer subunit epsilo 99.4 1.6E-12 5.5E-17 89.9 11.0 98 13-116 146-245 (291)
82 1fch_A Peroxisomal targeting s 99.4 1.6E-12 5.5E-17 90.5 11.1 98 14-117 198-297 (368)
83 1elr_A TPR2A-domain of HOP; HO 99.4 2.2E-12 7.4E-17 77.3 10.1 96 13-115 20-122 (131)
84 1w3b_A UDP-N-acetylglucosamine 99.4 6.1E-13 2.1E-17 93.9 8.6 95 15-115 289-383 (388)
85 1w3b_A UDP-N-acetylglucosamine 99.4 2.2E-12 7.5E-17 91.0 11.3 97 14-116 220-316 (388)
86 2vsy_A XCC0866; transferase, g 99.4 1.2E-12 4.1E-17 97.4 10.3 99 13-117 39-137 (568)
87 3qky_A Outer membrane assembly 99.4 6.6E-13 2.3E-17 89.5 7.8 91 15-108 33-134 (261)
88 2if4_A ATFKBP42; FKBP-like, al 99.4 6E-13 2.1E-17 93.9 7.7 97 13-115 195-308 (338)
89 3uq3_A Heat shock protein STI1 99.4 3.8E-12 1.3E-16 84.3 10.9 97 13-115 155-257 (258)
90 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.3E-12 4.4E-17 85.2 8.5 95 14-117 23-133 (213)
91 1fch_A Peroxisomal targeting s 99.4 2.6E-12 8.7E-17 89.5 9.9 98 13-116 233-341 (368)
92 2q7f_A YRRB protein; TPR, prot 99.4 5.7E-12 2E-16 83.0 11.1 94 16-115 76-169 (243)
93 3cv0_A Peroxisome targeting si 99.4 5E-12 1.7E-16 86.4 10.9 99 13-117 154-252 (327)
94 2q7f_A YRRB protein; TPR, prot 99.4 3.3E-12 1.1E-16 84.2 9.6 96 14-115 108-203 (243)
95 1na0_A Designed protein CTPR3; 99.4 5.2E-12 1.8E-16 74.9 9.7 81 31-117 9-89 (125)
96 2y4t_A DNAJ homolog subfamily 99.4 3.2E-12 1.1E-16 91.3 10.0 97 15-117 10-106 (450)
97 2ho1_A Type 4 fimbrial biogene 99.4 7.2E-12 2.5E-16 83.3 10.5 94 16-115 90-185 (252)
98 1xnf_A Lipoprotein NLPI; TPR, 99.4 8.7E-12 3E-16 83.5 10.8 94 13-112 59-152 (275)
99 2vq2_A PILW, putative fimbrial 99.4 9E-12 3.1E-16 80.9 10.6 98 14-115 59-157 (225)
100 3as5_A MAMA; tetratricopeptide 99.4 2E-12 7E-17 81.5 7.2 98 14-117 25-122 (186)
101 3u4t_A TPR repeat-containing p 99.4 3E-12 1E-16 85.9 8.4 100 14-116 20-119 (272)
102 2kck_A TPR repeat; tetratricop 99.4 4E-12 1.4E-16 74.3 7.9 86 13-104 22-110 (112)
103 3cv0_A Peroxisome targeting si 99.4 6.1E-12 2.1E-16 85.9 9.8 99 13-117 188-298 (327)
104 3qky_A Outer membrane assembly 99.3 1.1E-11 3.6E-16 83.6 10.6 98 13-116 68-196 (261)
105 2ho1_A Type 4 fimbrial biogene 99.3 8.6E-12 2.9E-16 82.9 9.9 97 14-116 54-152 (252)
106 3hym_B Cell division cycle pro 99.3 5.4E-12 1.8E-16 86.3 9.1 97 14-116 108-204 (330)
107 4eqf_A PEX5-related protein; a 99.3 3.2E-12 1.1E-16 89.4 8.0 92 14-111 82-173 (365)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.1E-11 3.9E-16 80.6 9.9 98 13-112 53-162 (213)
109 3u4t_A TPR repeat-containing p 99.3 6.6E-12 2.3E-16 84.2 9.0 96 14-115 91-186 (272)
110 3hym_B Cell division cycle pro 99.3 4.5E-12 1.5E-16 86.7 8.1 97 13-115 209-314 (330)
111 2vq2_A PILW, putative fimbrial 99.3 1.3E-11 4.4E-16 80.2 9.7 98 13-116 24-124 (225)
112 3fp2_A TPR repeat-containing p 99.3 5.4E-12 1.8E-16 91.9 8.6 85 27-117 21-105 (537)
113 2e2e_A Formate-dependent nitri 99.3 1.1E-11 3.8E-16 78.9 8.9 90 13-108 60-152 (177)
114 2c2l_A CHIP, carboxy terminus 99.3 5E-12 1.7E-16 87.0 7.7 86 13-104 20-105 (281)
115 1zu2_A Mitochondrial import re 99.3 4.1E-12 1.4E-16 81.3 6.6 66 48-117 17-92 (158)
116 3ieg_A DNAJ homolog subfamily 99.3 2.2E-11 7.5E-16 83.9 10.8 97 13-115 250-350 (359)
117 2xpi_A Anaphase-promoting comp 99.3 3.5E-11 1.2E-15 88.8 12.4 99 13-117 491-596 (597)
118 2gw1_A Mitochondrial precursor 99.3 1.8E-11 6.3E-16 88.3 10.5 82 29-117 4-85 (514)
119 3ieg_A DNAJ homolog subfamily 99.3 2.2E-11 7.5E-16 83.9 10.1 94 13-112 19-115 (359)
120 3fp2_A TPR repeat-containing p 99.3 1.9E-11 6.4E-16 89.0 10.0 99 13-117 292-390 (537)
121 3qou_A Protein YBBN; thioredox 99.3 1.5E-11 5E-16 84.8 9.0 101 13-115 133-265 (287)
122 3mkr_A Coatomer subunit epsilo 99.3 2.3E-11 8E-16 84.1 9.9 91 13-109 182-273 (291)
123 1wao_1 Serine/threonine protei 99.3 1.1E-12 3.7E-17 96.6 3.3 84 28-117 3-86 (477)
124 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.3E-11 1.1E-15 79.9 9.9 83 31-116 4-89 (225)
125 3k9i_A BH0479 protein; putativ 99.3 4.8E-12 1.6E-16 76.0 5.1 69 48-117 5-73 (117)
126 1dce_A Protein (RAB geranylger 99.3 5.2E-11 1.8E-15 89.5 11.1 100 10-115 42-153 (567)
127 2r5s_A Uncharacterized protein 99.3 3.9E-11 1.3E-15 76.7 9.0 102 13-116 22-155 (176)
128 2v5f_A Prolyl 4-hydroxylase su 99.3 1.5E-10 5.2E-15 68.7 10.9 80 31-112 5-87 (104)
129 1qqe_A Vesicular transport pro 99.2 5E-11 1.7E-15 82.0 9.7 102 13-116 93-210 (292)
130 2y4t_A DNAJ homolog subfamily 99.2 8.5E-11 2.9E-15 83.9 11.0 95 13-113 42-139 (450)
131 2fo7_A Synthetic consensus TPR 99.2 1.6E-10 5.5E-15 68.9 9.9 80 32-117 2-81 (136)
132 2xpi_A Anaphase-promoting comp 99.2 1E-10 3.4E-15 86.3 10.5 97 14-116 390-486 (597)
133 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.9E-11 2.7E-15 78.1 8.7 99 13-117 57-196 (225)
134 3dra_A Protein farnesyltransfe 99.2 1.5E-10 5.3E-15 81.1 10.2 100 11-115 47-154 (306)
135 2ond_A Cleavage stimulation fa 99.2 1.4E-10 4.6E-15 80.3 9.6 96 14-115 33-144 (308)
136 3edt_B KLC 2, kinesin light ch 99.2 1.9E-10 6.5E-15 76.7 9.8 103 13-117 17-139 (283)
137 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.6E-15 78.0 8.1 101 14-116 60-180 (283)
138 2ond_A Cleavage stimulation fa 99.2 2.4E-10 8.1E-15 79.1 9.7 95 14-114 81-177 (308)
139 1qqe_A Vesicular transport pro 99.2 1.6E-10 5.5E-15 79.5 8.8 103 13-117 53-170 (292)
140 2gw1_A Mitochondrial precursor 99.2 6.8E-11 2.3E-15 85.3 6.8 96 14-115 355-459 (514)
141 3qou_A Protein YBBN; thioredox 99.1 2.5E-10 8.6E-15 78.6 9.3 92 19-116 105-230 (287)
142 4g1t_A Interferon-induced prot 99.1 2.9E-10 9.8E-15 81.8 9.9 101 13-115 67-182 (472)
143 3dss_A Geranylgeranyl transfer 99.1 6.6E-10 2.3E-14 78.7 11.1 101 11-115 44-154 (331)
144 4g1t_A Interferon-induced prot 99.1 3.3E-10 1.1E-14 81.5 9.5 99 14-116 192-292 (472)
145 3q7a_A Farnesyltransferase alp 99.1 6.3E-10 2.2E-14 79.3 10.3 100 11-115 68-169 (349)
146 1pc2_A Mitochondria fission pr 99.1 8.6E-10 3E-14 69.9 9.6 89 19-111 20-111 (152)
147 2kat_A Uncharacterized protein 99.1 5.4E-10 1.9E-14 66.5 8.1 62 51-116 3-64 (115)
148 3dra_A Protein farnesyltransfe 99.1 6E-10 2.1E-14 78.1 9.1 98 13-116 85-191 (306)
149 3dss_A Geranylgeranyl transfer 99.1 1.6E-09 5.6E-14 76.7 11.3 99 14-116 91-190 (331)
150 3ulq_A Response regulator aspa 99.1 9.5E-10 3.3E-14 77.7 10.1 102 14-117 160-276 (383)
151 1dce_A Protein (RAB geranylger 99.1 3.9E-10 1.3E-14 84.7 8.2 100 13-116 89-189 (567)
152 2r5s_A Uncharacterized protein 99.1 6.9E-11 2.4E-15 75.6 3.5 78 27-111 2-79 (176)
153 3u3w_A Transcriptional activat 99.1 1.7E-10 5.8E-15 79.2 5.5 102 14-117 132-248 (293)
154 3bee_A Putative YFRE protein; 99.0 7.7E-10 2.6E-14 64.7 7.0 74 27-104 2-76 (93)
155 3nf1_A KLC 1, kinesin light ch 99.0 1.4E-09 4.9E-14 73.6 8.9 101 14-116 86-206 (311)
156 2qfc_A PLCR protein; TPR, HTH, 99.0 8.6E-10 2.9E-14 75.6 7.5 101 14-117 132-248 (293)
157 3nf1_A KLC 1, kinesin light ch 99.0 2.8E-09 9.5E-14 72.1 8.9 102 14-117 44-165 (311)
158 2ifu_A Gamma-SNAP; membrane fu 99.0 2.5E-09 8.7E-14 74.0 8.3 101 13-116 92-206 (307)
159 2l6j_A TPR repeat-containing p 99.0 1.7E-10 5.9E-15 67.6 1.9 78 13-96 20-103 (111)
160 3rjv_A Putative SEL1 repeat pr 99.0 3.6E-09 1.2E-13 69.7 8.3 96 12-116 68-173 (212)
161 3ulq_A Response regulator aspa 99.0 1.4E-08 4.6E-13 71.7 11.7 102 13-116 200-314 (383)
162 3q15_A PSP28, response regulat 98.9 7.4E-09 2.5E-13 73.1 9.9 101 15-117 159-273 (378)
163 3sf4_A G-protein-signaling mod 98.9 4.1E-09 1.4E-13 73.8 8.2 88 27-116 183-278 (406)
164 4a1s_A PINS, partner of inscut 98.9 4.5E-09 1.6E-13 74.2 8.4 84 27-116 44-137 (411)
165 3ro3_A PINS homolog, G-protein 98.9 1E-08 3.5E-13 62.7 9.0 101 14-116 26-140 (164)
166 2kc7_A BFR218_protein; tetratr 98.9 9.2E-10 3.1E-14 63.6 3.8 79 13-105 16-95 (99)
167 1ouv_A Conserved hypothetical 98.9 1.8E-08 6.1E-13 67.9 10.7 77 29-115 36-120 (273)
168 3qww_A SET and MYND domain-con 98.9 3E-08 1E-12 72.4 12.5 93 14-108 315-424 (433)
169 3q7a_A Farnesyltransferase alp 98.9 5.4E-09 1.8E-13 74.5 7.9 100 13-117 105-213 (349)
170 3ma5_A Tetratricopeptide repea 98.9 2.6E-09 8.8E-14 62.5 5.2 51 67-117 3-53 (100)
171 4a1s_A PINS, partner of inscut 98.9 4.4E-09 1.5E-13 74.3 7.3 101 14-116 65-177 (411)
172 3gw4_A Uncharacterized protein 98.9 1E-08 3.4E-13 65.7 8.3 86 29-116 24-118 (203)
173 3n71_A Histone lysine methyltr 98.9 1.7E-08 5.8E-13 74.8 10.1 80 27-108 347-435 (490)
174 3q15_A PSP28, response regulat 98.9 7.2E-08 2.4E-12 68.1 12.8 100 14-115 199-310 (378)
175 1ouv_A Conserved hypothetical 98.9 5.7E-08 2E-12 65.4 11.6 92 13-116 58-157 (273)
176 3sf4_A G-protein-signaling mod 98.8 1.1E-08 3.9E-13 71.5 8.0 101 14-116 204-318 (406)
177 3ro3_A PINS homolog, G-protein 98.8 1.1E-08 3.9E-13 62.5 7.2 87 28-116 6-100 (164)
178 3ro2_A PINS homolog, G-protein 98.8 1.4E-08 5E-13 68.8 8.1 88 27-116 179-274 (338)
179 2ifu_A Gamma-SNAP; membrane fu 98.8 3E-08 1E-12 68.5 9.6 90 13-105 131-228 (307)
180 2ooe_A Cleavage stimulation fa 98.8 2.8E-08 9.6E-13 73.2 10.0 95 15-115 256-366 (530)
181 3ro2_A PINS homolog, G-protein 98.8 1.8E-08 6.3E-13 68.3 8.4 102 13-116 21-134 (338)
182 3gw4_A Uncharacterized protein 98.8 2.7E-08 9.2E-13 63.7 8.0 101 14-116 43-158 (203)
183 3rjv_A Putative SEL1 repeat pr 98.8 2.7E-08 9.1E-13 65.5 8.1 89 16-117 5-97 (212)
184 1na3_A Designed protein CTPR2; 98.8 3.7E-08 1.3E-12 55.4 7.5 67 13-85 25-91 (91)
185 3qwp_A SET and MYND domain-con 98.8 6.6E-08 2.3E-12 70.5 10.5 87 27-115 325-423 (429)
186 3u3w_A Transcriptional activat 98.8 5.4E-08 1.8E-12 66.6 9.4 85 14-100 172-266 (293)
187 4f3v_A ESX-1 secretion system 98.7 1.2E-08 4E-13 70.8 5.1 75 31-112 171-248 (282)
188 2qfc_A PLCR protein; TPR, HTH, 98.7 2E-07 6.8E-12 63.8 11.3 85 31-117 115-208 (293)
189 4f3v_A ESX-1 secretion system 98.7 3.9E-07 1.3E-11 63.2 10.9 98 13-117 118-220 (282)
190 2ooe_A Cleavage stimulation fa 98.6 2.3E-07 7.9E-12 68.3 9.7 85 20-112 2-86 (530)
191 1nzn_A CGI-135 protein, fissio 98.6 4E-07 1.4E-11 55.9 9.2 79 27-111 31-114 (126)
192 1hz4_A MALT regulatory protein 98.6 7.3E-07 2.5E-11 62.4 10.2 99 15-115 71-184 (373)
193 1y8m_A FIS1; mitochondria, unk 98.5 4.1E-06 1.4E-10 52.3 11.2 99 9-111 14-117 (144)
194 3o48_A Mitochondria fission 1 98.5 6.3E-06 2.1E-10 50.9 11.8 99 9-111 15-118 (134)
195 2xm6_A Protein corresponding t 98.5 8.5E-07 2.9E-11 64.7 9.3 91 15-115 349-450 (490)
196 3bee_A Putative YFRE protein; 98.5 1.4E-06 4.7E-11 50.6 8.4 65 9-76 21-85 (93)
197 1klx_A Cysteine rich protein B 98.5 1.2E-06 4E-11 54.1 8.3 85 16-112 44-136 (138)
198 3ly7_A Transcriptional activat 98.4 1.9E-06 6.3E-11 61.8 9.9 83 25-114 271-353 (372)
199 3n71_A Histone lysine methyltr 98.4 7.4E-07 2.5E-11 66.0 8.2 85 31-117 309-405 (490)
200 1klx_A Cysteine rich protein B 98.4 5.6E-06 1.9E-10 51.0 10.8 91 13-117 11-105 (138)
201 3u64_A Protein TP_0956; tetrat 98.4 2E-06 6.7E-11 59.9 8.4 84 14-103 180-272 (301)
202 1hz4_A MALT regulatory protein 98.4 6.3E-07 2.2E-11 62.7 6.1 101 14-116 31-146 (373)
203 3e4b_A ALGK; tetratricopeptide 98.4 9.5E-07 3.3E-11 64.3 7.2 90 13-117 233-330 (452)
204 3qww_A SET and MYND domain-con 98.3 1.6E-06 5.4E-11 63.4 7.7 82 35-118 302-395 (433)
205 3mv2_B Coatomer subunit epsilo 98.3 2.9E-06 9.9E-11 59.5 8.6 95 13-114 152-264 (310)
206 3qwp_A SET and MYND domain-con 98.3 4.4E-06 1.5E-10 60.9 8.7 84 32-117 288-383 (429)
207 2xm6_A Protein corresponding t 98.3 1.3E-05 4.4E-10 58.4 11.1 75 31-115 75-157 (490)
208 3e4b_A ALGK; tetratricopeptide 98.1 1.4E-05 4.7E-10 58.2 8.1 93 13-116 195-294 (452)
209 3mv2_B Coatomer subunit epsilo 98.1 1.2E-05 4.1E-10 56.4 6.8 79 19-103 88-168 (310)
210 3ffl_A Anaphase-promoting comp 98.0 4.9E-05 1.7E-09 48.6 9.0 83 31-116 63-166 (167)
211 3ly7_A Transcriptional activat 98.0 6E-05 2.1E-09 54.0 9.2 97 14-115 216-320 (372)
212 3u64_A Protein TP_0956; tetrat 97.9 6.3E-05 2.1E-09 52.4 8.6 92 22-117 143-251 (301)
213 4b4t_Q 26S proteasome regulato 97.9 7.1E-05 2.4E-09 53.0 8.1 85 15-101 113-205 (434)
214 1b89_A Protein (clathrin heavy 97.8 4.3E-05 1.5E-09 56.1 6.5 81 32-117 149-253 (449)
215 1xi4_A Clathrin heavy chain; a 97.8 9.9E-05 3.4E-09 60.8 8.1 83 32-116 1222-1325(1630)
216 1xi4_A Clathrin heavy chain; a 97.7 0.00015 5.2E-09 59.8 8.0 65 28-103 1102-1166(1630)
217 4b4t_Q 26S proteasome regulato 97.6 0.00013 4.4E-09 51.7 6.1 72 33-106 6-90 (434)
218 1pc2_A Mitochondria fission pr 97.5 0.0013 4.5E-08 41.5 9.2 62 14-81 52-115 (152)
219 3ffl_A Anaphase-promoting comp 97.4 0.00046 1.6E-08 44.1 6.5 67 31-100 20-92 (167)
220 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0012 4E-08 38.4 7.0 45 29-79 44-88 (104)
221 1b89_A Protein (clathrin heavy 97.1 8.5E-05 2.9E-09 54.5 0.0 73 31-115 32-104 (449)
222 4gns_B Protein CSD3, chitin bi 96.9 0.0074 2.5E-07 47.0 9.2 62 30-97 336-397 (754)
223 4e6h_A MRNA 3'-END-processing 96.9 0.0066 2.3E-07 46.7 8.9 77 18-100 330-407 (679)
224 4e6h_A MRNA 3'-END-processing 96.8 0.011 3.6E-07 45.6 9.5 92 13-110 48-144 (679)
225 1ya0_A SMG-7 transcript varian 96.4 0.028 9.5E-07 41.8 9.4 77 32-114 153-229 (497)
226 2ff4_A Probable regulatory pro 96.3 0.064 2.2E-06 38.4 10.5 67 27-99 167-233 (388)
227 4gns_B Protein CSD3, chitin bi 96.1 0.059 2E-06 42.0 10.1 103 15-117 267-383 (754)
228 1nzn_A CGI-135 protein, fissio 96.1 0.058 2E-06 32.8 8.1 60 16-81 57-118 (126)
229 1zbp_A Hypothetical protein VP 95.9 0.048 1.7E-06 37.4 7.6 62 40-107 6-67 (273)
230 3o48_A Mitochondria fission 1 95.6 0.17 5.7E-06 31.1 8.5 61 15-81 61-122 (134)
231 2uy1_A Cleavage stimulation fa 95.1 0.13 4.4E-06 37.9 8.4 59 50-113 196-254 (493)
232 4h7y_A Dual specificity protei 94.9 0.083 2.8E-06 33.3 5.7 56 48-107 75-130 (161)
233 1y8m_A FIS1; mitochondria, unk 94.4 0.34 1.1E-05 30.1 7.5 60 15-80 60-120 (144)
234 4h7y_A Dual specificity protei 94.3 0.56 1.9E-05 29.6 8.5 45 16-62 79-123 (161)
235 2ff4_A Probable regulatory pro 94.2 0.85 2.9E-05 32.5 10.6 81 34-116 118-216 (388)
236 1zbp_A Hypothetical protein VP 93.9 1 3.5E-05 30.9 10.3 89 13-103 13-132 (273)
237 4b4t_R RPN7, 26S proteasome re 92.4 0.4 1.4E-05 34.7 6.4 67 31-100 131-197 (429)
238 2vkj_A TM1634; membrane protei 90.9 1.3 4.6E-05 25.2 6.8 51 28-82 50-101 (106)
239 3kae_A CDC27, possible protein 90.7 2.4 8.1E-05 27.6 10.0 84 19-106 52-149 (242)
240 2uy1_A Cleavage stimulation fa 90.6 3.9 0.00013 30.0 10.3 73 31-110 286-359 (493)
241 3txn_A 26S proteasome regulato 90.4 3.8 0.00013 29.5 10.1 63 36-100 104-168 (394)
242 2w2u_A Hypothetical P60 katani 89.9 0.75 2.6E-05 25.7 4.6 31 30-62 18-48 (83)
243 2v6y_A AAA family ATPase, P60 89.1 0.92 3.1E-05 25.3 4.6 31 30-62 10-40 (83)
244 2crb_A Nuclear receptor bindin 88.9 1.1 3.8E-05 25.6 4.8 28 71-98 15-42 (97)
245 4g26_A Pentatricopeptide repea 88.6 5.9 0.0002 29.2 10.1 89 16-111 89-181 (501)
246 4a5x_A MITD1, MIT domain-conta 88.2 1.2 4.3E-05 24.9 4.8 31 30-62 15-45 (86)
247 1ya0_A SMG-7 transcript varian 87.6 1.1 3.8E-05 33.3 5.4 43 73-115 154-196 (497)
248 1wfd_A Hypothetical protein 15 85.9 1.8 6.1E-05 24.6 4.6 30 31-62 15-44 (93)
249 3myv_A SUSD superfamily protei 85.7 3.8 0.00013 29.7 7.4 52 49-100 164-219 (454)
250 2v6x_A Vacuolar protein sortin 85.7 1.9 6.4E-05 23.9 4.6 30 31-62 13-42 (85)
251 2cfu_A SDSA1; SDS-hydrolase, l 85.4 2.6 9E-05 32.3 6.6 51 31-87 449-499 (658)
252 3mcx_A SUSD superfamily protei 84.8 4.7 0.00016 29.4 7.6 53 49-101 176-232 (477)
253 3kez_A Putative sugar binding 84.7 4.5 0.00015 29.4 7.4 51 50-100 171-225 (461)
254 2cpt_A SKD1 protein, vacuolar 84.3 2.1 7.3E-05 25.4 4.6 30 31-62 18-47 (117)
255 4g26_A Pentatricopeptide repea 84.2 10 0.00036 27.8 9.6 84 14-103 122-209 (501)
256 3t5x_A PCI domain-containing p 83.8 2.4 8.4E-05 27.5 5.1 33 29-63 12-44 (203)
257 2w2u_A Hypothetical P60 katani 83.7 2.6 8.9E-05 23.4 4.5 25 75-99 23-47 (83)
258 3lew_A SUSD-like carbohydrate 83.3 5.4 0.00018 29.3 7.4 52 50-101 175-233 (495)
259 3ax2_A Mitochondrial import re 82.5 3.6 0.00012 22.4 4.7 26 35-62 21-46 (73)
260 3spa_A Mtrpol, DNA-directed RN 81.5 13 0.00044 30.6 9.1 79 30-111 126-206 (1134)
261 2v6y_A AAA family ATPase, P60 81.4 3.6 0.00012 22.8 4.5 25 75-99 15-39 (83)
262 3t5x_A PCI domain-containing p 80.6 7.3 0.00025 25.2 6.5 43 68-110 11-53 (203)
263 3qnk_A Putative lipoprotein; a 80.1 7.7 0.00026 28.6 7.2 51 50-100 154-211 (517)
264 2ijq_A Hypothetical protein; s 79.9 8.9 0.0003 24.1 9.2 65 33-99 34-103 (161)
265 3mkq_B Coatomer subunit alpha; 79.4 9.8 0.00034 24.3 8.2 66 30-97 33-115 (177)
266 3snx_A SUSD homolog, putative 79.3 6.8 0.00023 28.6 6.6 33 68-100 188-220 (460)
267 4a5x_A MITD1, MIT domain-conta 79.2 5.2 0.00018 22.3 4.8 29 72-100 17-45 (86)
268 2o8p_A 14-3-3 domain containin 79.2 7.4 0.00025 25.9 6.2 53 48-100 140-197 (227)
269 3hdx_A SUSD homolog, SUSD supe 78.3 11 0.00037 27.5 7.4 31 70-100 196-226 (478)
270 3ax2_A Mitochondrial import re 78.2 6.3 0.00022 21.4 5.3 34 75-108 21-54 (73)
271 2v6x_A Vacuolar protein sortin 77.1 5.7 0.00019 21.9 4.5 27 74-100 16-42 (85)
272 3mkq_A Coatomer beta'-subunit; 76.8 17 0.00057 27.5 8.4 27 31-59 681-707 (814)
273 1wfd_A Hypothetical protein 15 76.7 5.8 0.0002 22.4 4.5 26 74-99 18-43 (93)
274 2br9_A 14-3-3E, 14-3-3 protein 76.6 14 0.00049 24.6 8.6 50 50-99 147-201 (234)
275 3iqu_A 14-3-3 protein sigma; s 76.6 11 0.00038 25.2 6.5 50 50-99 150-204 (236)
276 3kae_A CDC27, possible protein 76.2 13 0.00046 24.1 6.9 57 31-98 33-89 (242)
277 4b4t_S RPN3, 26S proteasome re 75.3 7.6 0.00026 29.1 5.9 73 30-104 230-303 (523)
278 2cpt_A SKD1 protein, vacuolar 75.1 6.1 0.00021 23.4 4.5 25 75-99 22-46 (117)
279 3i4g_A SUSD-like carbohydrate 75.0 14 0.00047 27.4 7.3 51 50-100 168-227 (528)
280 2cwy_A Hypothetical protein TT 74.1 9.8 0.00033 21.5 6.5 57 35-99 5-67 (94)
281 1o9d_A 14-3-3-like protein C; 73.4 19 0.00064 24.5 7.9 50 50-99 152-206 (260)
282 2dl1_A Spartin; SPG20, MIT, st 73.2 5.4 0.00019 23.7 3.9 15 48-62 18-32 (116)
283 1om2_A Protein (mitochondrial 73.0 6 0.0002 22.7 3.9 28 35-64 24-51 (95)
284 2rpa_A Katanin P60 ATPase-cont 72.0 5.2 0.00018 22.0 3.4 26 74-99 15-40 (78)
285 2crb_A Nuclear receptor bindin 71.6 10 0.00036 21.6 4.6 30 31-62 15-44 (97)
286 3jq1_A SUSD superfamily protei 70.7 9.7 0.00033 27.9 5.6 50 50-99 155-208 (481)
287 3uzd_A 14-3-3 protein gamma; s 70.7 21 0.00073 24.0 8.6 50 50-99 148-202 (248)
288 3mkq_A Coatomer beta'-subunit; 70.4 19 0.00066 27.1 7.4 30 68-97 678-707 (814)
289 3efz_A 14-3-3 protein; 14-3-3, 69.9 14 0.00047 25.3 5.7 51 50-100 169-226 (268)
290 3ubw_A 14-3-3E, 14-3-3 protein 69.6 23 0.0008 24.0 8.6 50 50-99 173-227 (261)
291 4gq2_M Nucleoporin NUP120; bet 68.2 14 0.00049 29.5 6.4 52 37-98 816-867 (950)
292 1om2_A Protein (mitochondrial 67.4 11 0.00036 21.6 4.1 31 76-106 25-55 (95)
293 2cfu_A SDSA1; SDS-hydrolase, l 67.0 16 0.00054 28.0 6.2 44 73-116 451-494 (658)
294 3mkq_B Coatomer subunit alpha; 66.4 22 0.00076 22.6 7.2 51 37-98 11-61 (177)
295 3t5v_B Nuclear mRNA export pro 66.2 15 0.0005 27.0 5.7 67 36-104 181-254 (455)
296 2npm_A 14-3-3 domain containin 64.6 30 0.001 23.5 8.6 50 50-99 173-226 (260)
297 4gq2_M Nucleoporin NUP120; bet 63.6 40 0.0014 27.0 8.1 71 34-106 843-933 (950)
298 3jys_A SUSD superfamily protei 62.0 30 0.001 25.5 6.7 51 49-99 161-222 (499)
299 2yhe_A SEC-alkyl sulfatase; hy 65.0 1.8 6.1E-05 33.4 0.0 54 31-90 461-514 (668)
300 3ckc_A SUSD; TPR repeat, carbo 59.2 35 0.0012 24.9 6.7 50 50-99 170-231 (527)
301 3ihv_A SUSD homolog; NP_813570 57.8 36 0.0012 25.1 6.6 60 50-109 164-247 (535)
302 3otn_A SUSD superfamily protei 57.7 28 0.00096 25.4 6.0 50 51-100 163-226 (482)
303 1wy6_A Hypothetical protein ST 57.7 32 0.0011 21.5 7.4 34 67-100 121-154 (172)
304 1qsa_A Protein (soluble lytic 55.3 67 0.0023 24.5 10.2 53 41-99 295-347 (618)
305 3eab_A Spastin; spastin, MIT, 54.5 20 0.00069 20.2 3.7 15 48-62 12-26 (89)
306 4fhn_B Nucleoporin NUP120; pro 54.2 21 0.00072 29.1 5.1 31 67-97 838-868 (1139)
307 4b4t_S RPN3, 26S proteasome re 53.3 69 0.0024 24.0 7.5 36 28-65 267-302 (523)
308 4fhn_B Nucleoporin NUP120; pro 52.3 48 0.0017 27.0 6.9 67 34-102 845-930 (1139)
309 4b4t_P 26S proteasome regulato 51.7 65 0.0022 23.2 8.7 69 30-100 176-247 (445)
310 2e2a_A Protein (enzyme IIA); h 49.7 34 0.0012 19.8 4.3 34 26-61 15-48 (105)
311 3mv2_A Coatomer subunit alpha; 49.6 65 0.0022 22.6 9.8 27 80-106 216-242 (325)
312 2yin_A DOCK2, dedicator of cyt 48.9 16 0.00055 26.6 3.4 30 32-62 92-121 (436)
313 3k1s_A PTS system, cellobiose- 45.9 42 0.0014 19.6 4.3 32 27-60 18-49 (109)
314 4aez_C MAD3, mitotic spindle c 45.0 53 0.0018 21.7 5.2 36 67-102 146-181 (223)
315 3jq0_A SUSD superfamily protei 43.5 49 0.0017 24.1 5.3 31 69-99 181-219 (493)
316 3spa_A Mtrpol, DNA-directed RN 43.3 1.4E+02 0.0049 24.8 10.7 65 30-99 164-229 (1134)
317 2jpu_A ORF C02003 protein; sol 42.5 54 0.0018 19.7 4.5 31 30-62 6-36 (129)
318 3re2_A Predicted protein; meni 42.4 41 0.0014 24.4 4.5 48 52-99 276-324 (472)
319 3s6n_M SurviVal motor neuron p 42.3 24 0.00083 16.2 2.2 15 48-62 17-31 (37)
320 2xze_A STAM-binding protein; h 42.3 54 0.0018 20.0 4.6 32 29-62 38-69 (146)
321 2ymb_A MITD1, MIT domain-conta 41.8 5.4 0.00019 27.1 0.0 30 31-62 23-52 (257)
322 3l8r_A PTCA, putative PTS syst 40.2 58 0.002 19.4 6.6 36 24-61 30-65 (120)
323 2a9u_A Ubiquitin carboxyl-term 36.7 73 0.0025 19.5 4.6 31 30-62 41-71 (144)
324 3t5v_B Nuclear mRNA export pro 36.6 99 0.0034 22.7 6.0 35 29-65 218-253 (455)
325 3u84_A Menin; MLL, JUND, ledgf 36.4 57 0.002 24.2 4.5 48 52-99 298-346 (550)
326 4b4t_P 26S proteasome regulato 36.3 1.2E+02 0.0041 21.8 7.8 66 31-98 137-204 (445)
327 3l22_A SUSD superfamily protei 36.1 24 0.00082 25.4 2.6 30 69-98 199-228 (441)
328 3bu8_A Telomeric repeat-bindin 35.6 78 0.0027 21.1 4.7 68 14-87 89-164 (235)
329 4a1g_A Mitotic checkpoint seri 35.3 79 0.0027 19.5 6.8 39 67-105 97-135 (152)
330 1wcr_A PTS system, N, N'-diace 34.7 67 0.0023 18.5 6.1 33 27-61 14-46 (103)
331 2yhe_A SEC-alkyl sulfatase; hy 40.2 8.6 0.0003 29.6 0.0 45 73-117 463-507 (668)
332 4gq4_A Menin; tumor suppressor 33.4 68 0.0023 23.7 4.5 48 52-99 283-331 (489)
333 2wb7_A PT26-6P; extra chromoso 32.3 1.6E+02 0.0055 22.1 6.7 37 49-85 448-488 (526)
334 3nqp_A SUSD superfamily protei 31.9 1.3E+02 0.0045 22.0 6.1 51 49-99 167-241 (514)
335 3mkr_B Coatomer subunit alpha; 31.3 1.3E+02 0.0046 21.0 9.7 25 81-105 208-232 (320)
336 4aez_C MAD3, mitotic spindle c 30.8 83 0.0028 20.8 4.3 33 28-62 147-179 (223)
337 2pmr_A Uncharacterized protein 30.7 73 0.0025 17.7 4.1 23 31-55 39-61 (87)
338 2oo2_A Hypothetical protein AF 29.5 77 0.0026 17.6 4.1 25 30-56 34-58 (86)
339 1o3u_A Conserved hypothetical 29.3 91 0.0031 18.4 4.6 33 28-62 13-45 (135)
340 2wvi_A Mitotic checkpoint seri 29.2 1.1E+02 0.0037 19.1 6.8 37 67-103 92-128 (164)
341 3txn_A 26S proteasome regulato 28.4 1.6E+02 0.0056 21.0 10.3 69 29-99 137-209 (394)
342 3kez_A Putative sugar binding 27.6 98 0.0034 22.3 4.7 29 71-99 338-366 (461)
343 2zan_A Vacuolar protein sortin 27.5 13 0.00044 26.9 0.0 30 31-62 11-40 (444)
344 3bqo_A Telomeric repeat-bindin 26.1 53 0.0018 21.5 2.7 25 36-62 122-146 (211)
345 1ixm_A SPO0B, protein (sporula 25.6 1.3E+02 0.0045 19.0 5.1 22 78-99 39-60 (192)
346 3iv0_A SUSD homolog; NP_809186 25.6 1.8E+02 0.0063 21.0 5.9 50 49-98 166-239 (481)
347 2dl1_A Spartin; SPG20, MIT, st 24.1 1.2E+02 0.004 17.9 6.8 31 30-62 21-51 (116)
348 4b4t_R RPN7, 26S proteasome re 21.6 2.2E+02 0.0076 20.2 7.3 69 30-100 167-237 (429)
349 3bu8_A Telomeric repeat-bindin 21.0 1.2E+02 0.004 20.2 3.6 33 80-112 123-155 (235)
350 3hdx_A SUSD homolog, SUSD supe 20.8 1.4E+02 0.0049 21.5 4.5 30 70-99 363-392 (478)
351 2npu_A FKBP12-rapamycin comple 20.4 1.5E+02 0.0051 17.7 4.4 62 32-99 41-102 (126)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=1.7e-20 Score=115.72 Aligned_cols=89 Identities=36% Similarity=0.508 Sum_probs=72.1
Q ss_pred HHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 23 IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+..++|+.++.+.++|+.+++.| +|++|+..|+++|++ +|.++.+|+++|.|+..+|++++|+.+|+++++++|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKG--DYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 34578888888888888888888 788888888888888 888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHhcccC
Q 033417 103 TNVKVVILCSGSHPN 117 (119)
Q Consensus 103 ~~~~a~~~~a~~~~~ 117 (119)
+++.+|+.+|.++..
T Consensus 79 ~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 79 KFIKGYIRKAACLVA 93 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 888888888887653
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=1.3e-18 Score=107.30 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-++++..++++..++|.++..+..+|.+++..| ++++|+..|+++|++ +|.++.+|+++|.++..+|++++|+.
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLM--EFQRALDDCDTCIRL----DSKFIKGYIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc--cHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCCCHHHHHH
Confidence 357888999999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+|+++++++|++..++..++.++
T Consensus 103 ~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 103 AYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999875
No 3
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=9.2e-19 Score=111.46 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=83.9
Q ss_pred HHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 21 DAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.++..++|+++..++..|..+++.| +|++|+..|++++.+ +|.++.+|+++|.++..+|++++|+..|++++++
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKG--RIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 3444568999999999999999999 899999999999999 9999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhcccC
Q 033417 101 CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 101 ~p~~~~a~~~~a~~~~~ 117 (119)
+|+++.+|+.+|.+|..
T Consensus 100 ~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp SSSCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 99999999999998854
No 4
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=3.4e-18 Score=108.01 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+......+|+.+..++..|.++++.| +|++|+..|+++|++ +|+++.+|.++|.++..+|++++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--EYDLAKKYICTYINV----QERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 356677778888889999999999999999998 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.|+++++++|+++.+++.+|.+|.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999998875
No 5
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=1e-16 Score=105.77 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHH----------------HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKE----------------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
.++++..+.++..++|+++..+.. +|.+++..| ++++|+..|++++++ +|+++.++++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~ 93 (208)
T 3urz_A 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--NYDKAYLFYKELLQK----APNNVDCLEA 93 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHH
Confidence 457888999999999999999999 999999999 999999999999999 9999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 77 RAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|.++..+|++++|+..|+++++++|+++.+++.+|.+|+
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998874
No 6
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=3.2e-17 Score=100.91 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV- 105 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~- 105 (119)
.++.+.++.++|+.+++.| +|++|+..|+++|++ +|+++.+|.++|.|++.+|+|++|+.+|+++++++|++.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~--~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQK--DFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 3567889999999999999 999999999999999 999999999999999999999999999999999998764
Q ss_pred ------HHHHHHHhccc
Q 033417 106 ------KVVILCSGSHP 116 (119)
Q Consensus 106 ------~a~~~~a~~~~ 116 (119)
.+|+++|.++.
T Consensus 78 ~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57777777664
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=7.2e-17 Score=101.80 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=84.6
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+.++..++|+++..+...|..++..| +|++|+..|++++.+ +|.++.+++++|.++..+|++++|+..|++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSG--XYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777889999999999999999998 899999999999999 99999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHhcccC
Q 033417 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+++.+++.+|.+|..
T Consensus 83 ~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHH
Confidence 9999999999999988753
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-16 Score=97.56 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+.++..++|+++..+...|.+++..| +|++|+..|++++.+ +|.++.+++++|.++..+|++++|+..
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35556666666666666666666666666666 666666666666666 666666666666666666666666666
Q ss_pred HHHHHHhC------CCcHHHHHHHHhcc
Q 033417 94 TEEALKLC------PTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~------p~~~~a~~~~a~~~ 115 (119)
++++++++ |.+..++..++.+.
T Consensus 95 ~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 95 LDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 66666666 66666666665554
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.6e-16 Score=100.31 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++.+.+.++..++|+++.++...|.++...| ++++|+..|++++++ +|+++.+++++|.++..+|++.+|+.
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEE--NTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--chHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 457889999999999999999999999999999 899999999999999 99999999999999999999998887
Q ss_pred H-HHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 D-TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~-~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
. ++++++++|+++.++..++.++.
T Consensus 121 ~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 6 58999999999999998887764
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=1.2e-16 Score=99.48 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=76.4
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+.++..++|++...+...|..++..| +|++|+..|++++.. +|.++.+++++|.++..+|++++|+..|++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAG--KWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455556678888888888888888888 888888888888888 88888888888888888888888888888888
Q ss_pred HhCCCcHHHHHHHHhcccC
Q 033417 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+++.+++.+|.++..
T Consensus 80 ~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 8888888888888887643
No 11
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=4.1e-16 Score=99.12 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|.++..|..+|.+++..| +|++|+..|++++.+ +|+++.+++++|.|+..+|++++|+.
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--QFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 457888999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcH
Q 033417 93 DTEEALKLCPTNV 105 (119)
Q Consensus 93 ~~~~al~l~p~~~ 105 (119)
.|++++++.|+.+
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999876
No 12
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.67 E-value=3.9e-16 Score=100.05 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE------------NSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+..+.+.|+.++..| +|++|+..|+++|++ +|+ ++.+|.|+|.|+..+|+|++|+.+|+++
T Consensus 10 ~a~~~~~~G~~l~~~g--~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAG--EYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5888999999999999 999999999999999 555 3449999999999999999999999999
Q ss_pred HHh-------CCCcHHHH----HHHHhccc
Q 033417 98 LKL-------CPTNVKVV----ILCSGSHP 116 (119)
Q Consensus 98 l~l-------~p~~~~a~----~~~a~~~~ 116 (119)
|++ +|++.++| +++|.++.
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~ 113 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALD 113 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHH
Confidence 999 99999999 99999874
No 13
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.65 E-value=5.7e-16 Score=98.13 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+|..+..+.++|.++++.| +|++|+..++++|.+ +|.++.+|+++|.++..+|++++|+.++++++.++|+++
T Consensus 59 ~~~~~~~~~nla~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIG--DLHEAEETSSEVLKR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 5555555555555555555 555555555555555 555555555555555555555555555555555555555
No 14
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-15 Score=92.13 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|..+..+...|..++..| +|++|+..|++++.+ +|.++.++.++|.++..+|++++|+.+++++++++|+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 456889999999999999 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
++.+|.++..
T Consensus 75 ~~~lg~~~~~ 84 (126)
T 3upv_A 75 YIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 15
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.64 E-value=1.7e-15 Score=96.12 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..+.++..++|.++..+..+|.+++..| +|++|+..|++++.+ +|.++.+++++|.++..+|++++|+..
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASG--QHEKAAEDAELATVV----DPKYSKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 45666777777777777777777777777777 677777777777777 777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhc
Q 033417 94 TEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~ 114 (119)
|+++++++|++..+++.++.+
T Consensus 102 ~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 102 YEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHH
Confidence 777777777777766666544
No 16
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.64 E-value=1.3e-15 Score=96.68 Aligned_cols=85 Identities=26% Similarity=0.284 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++..+..+...|..++..| +|++|+..|++++.+ +|.++.+++++|.+++.+|++++|+.+|+++++++|+++.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARK--EYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 4567899999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 033417 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
+|+.+|.+|..
T Consensus 81 ~~~~lg~~~~~ 91 (164)
T 3sz7_A 81 AWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 17
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.64 E-value=1.8e-15 Score=96.82 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhH----------HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY----------YDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
.+++.+.++.+..++|++++.|.+.|.++...+ ++ ++|+..|+++|++ +|+.+.+|+++|.+|.
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~--~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELS--QFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--ccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHH
Confidence 346777888999999999999999999999887 54 5999999999999 9999999999999999
Q ss_pred Hhc-----------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 83 LLG-----------NYRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 83 ~l~-----------~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
.+| ++++|+.+|++|++++|++......+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 885 899999999999999999976665543
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.5e-15 Score=99.02 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=93.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|+++..+...|..+...| ++++|+..|++++++ + +++.+++++|.++..+|++++|+.
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~-~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--ERDKAEASLKQALAL----E-DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 456788899999999999999999999999999 899999999999999 8 899999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.|+++++++|+++.+++.+|.++..
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=1.2e-15 Score=117.34 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++..++|+++.++.++|.++.+.| ++++|+..|+++|++ +|+++.+|+++|.++..+|++++|+..
T Consensus 26 ~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--~~~eA~~~~~~Al~l----~P~~~~a~~nLg~~l~~~g~~~~A~~~ 99 (723)
T 4gyw_A 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQC 99 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555555555555555555555555555555 555555555555555 555555555555555555555555555
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|+++++++|++..+|+++|.+|
T Consensus 100 ~~kAl~l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 100 YTRAIQINPAFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555555544
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.3e-15 Score=101.16 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=74.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh--------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-------- 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-------- 84 (119)
.+++...++++..++|+++.++...|..+...| ++++|+..|++++++ +|+++.++.++|.++..+
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQLKLG--LVNPALENGKTLVAR----TPRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 345666777777777777777777777777777 777777777777777 777777777777777777
Q ss_pred ---cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 85 ---GNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ---~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|++++|+..++++++++|+++.+++.+|.++.
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 77777777777777777777777777777654
No 21
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.62 E-value=1.1e-14 Score=92.14 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|..+.+|+++|.|++.+|+|++|+.+|+++++++|+++.+|+++|.+|..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 109 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA 109 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999998854
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=2.5e-15 Score=115.65 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=94.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++..++|+++.++.++|+++...| ++++|+..|++++++ +|+++.+|+++|.++..+|++++|+.
T Consensus 59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g--~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ--DVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 467889999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.|+++++++|+++.+++.+|.++..
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHh
Confidence 9999999999999999999988753
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.1e-15 Score=108.46 Aligned_cols=98 Identities=10% Similarity=-0.016 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHh-HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH-YYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++++..++++..++|++..+|..+|.++...| + +++|+..|+++|.+ +|.++.+|+++|.++..+|++++|+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l----~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHccCHHHHH
Confidence 567777888888888888888888888888877 5 88888888888888 7778888888888888888888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|+++|+++|++..+|+.+|.++.
T Consensus 187 ~~~~kal~ldP~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 187 EFIADILNQDAKNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHH
Confidence 8888888888888777777777653
No 24
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.9e-15 Score=87.11 Aligned_cols=81 Identities=28% Similarity=0.459 Sum_probs=76.7
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN----- 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----- 104 (119)
.+..+...|..++..| +|++|+..|++++.+ +|.++.++.++|.++..+|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG--LYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4678999999999999 999999999999999 99999999999999999999999999999999999999
Q ss_pred -HHHHHHHHhccc
Q 033417 105 -VKVVILCSGSHP 116 (119)
Q Consensus 105 -~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 77 ~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 77 RSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 999999988764
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=9.2e-16 Score=110.38 Aligned_cols=99 Identities=15% Similarity=0.007 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++..++|++..+|.++|.++...| ++++|+..|+++|.+ +|.++.+|+++|.++..+|++++|+.
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g--~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHH
Confidence 467889999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+++|+++|++..+|+.+|.++..
T Consensus 222 ~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 222 YVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 26
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.61 E-value=1.2e-14 Score=87.70 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=85.0
Q ss_pred ChhhHHHHHHHHHh---cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.++++..+.++..+ +|+.+..+..+|.+++..| +|++|+..|++++++ +|+++.+++++|.++..+|++++
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--EYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCCHHH
Confidence 45688899999999 7999999999999999999 899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHH
Q 033417 90 ALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~ 109 (119)
|+..+++++.+.|+++....
T Consensus 80 A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999877653
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=5.1e-15 Score=93.22 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|.++..+...|.++...| +|++|+..|++++.+ +|+++.+++++|.++..+|++++|+.
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--QYDLAIHSYSYGAVM----DIXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 457788899999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHH
Q 033417 93 DTEEALKLCPTNVKV 107 (119)
Q Consensus 93 ~~~~al~l~p~~~~a 107 (119)
.|+++++++|+++..
T Consensus 111 ~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 111 GLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCGGG
T ss_pred HHHHHHHHCcCCCcc
Confidence 999999999987654
No 28
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=4.5e-15 Score=92.35 Aligned_cols=93 Identities=18% Similarity=0.139 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|.++..+...|.++...| +|++|+..|++++.+ +|.++.+++++|.++..+|++++|+.
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--LYEQALQSYSYGALM----DINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 456788899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHH
Q 033417 93 DTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~ 111 (119)
.++++++++|+++.....+
T Consensus 108 ~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 108 GFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCCcchHHHH
Confidence 9999999999876554433
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=3.5e-15 Score=95.68 Aligned_cols=93 Identities=17% Similarity=0.058 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+...+.++..++|.+...+...|.+++..| ++++|+..|++++++ +|.++.++.++|.++..+|++++|+..
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG--EHDKAIEAYEKTISI----KPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--CchhHHHHHHHHHHh----cchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 34556677777777888888888888888877 788888888888888 788888888888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHhc
Q 033417 94 TEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~ 114 (119)
|+++++++|+++ .+.+|.+
T Consensus 164 ~~~al~~~p~~a--~~~lali 182 (184)
T 3vtx_A 164 FKKALEKEEKKA--KYELALV 182 (184)
T ss_dssp HHHHHHTTHHHH--HHCSCCS
T ss_pred HHHHHhCCccCH--HHHHHhh
Confidence 888888887653 4555543
No 30
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=6.9e-15 Score=89.71 Aligned_cols=84 Identities=15% Similarity=0.018 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...++++..++|+++.++..+|.++...| ++++|+..|++++.+ +|+++.+++++|.++..+|++++|+..+
T Consensus 35 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (121)
T 1hxi_A 35 EAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASL 108 (121)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555555555555555555 455555555555555 5555555555555555555555555555
Q ss_pred HHHHHhCCCc
Q 033417 95 EEALKLCPTN 104 (119)
Q Consensus 95 ~~al~l~p~~ 104 (119)
+++++++|++
T Consensus 109 ~~al~~~P~~ 118 (121)
T 1hxi_A 109 RAWLLSQPQY 118 (121)
T ss_dssp HHHHC-----
T ss_pred HHHHHhCcCC
Confidence 5555555544
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.59 E-value=3.3e-15 Score=105.35 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---------------HHHHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVNL 82 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~~ 82 (119)
..+......+|..+..+...|+.+++.| +|++|+..|++++.+ .|.+ ..++.++|.|++
T Consensus 134 ~~~~~a~~~~p~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 134 ESWEMNSEEKLEQSTIVKERGTVYFKEG--KYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777888888888888877 788888888888888 6666 577888888888
Q ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 83 LLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|++++|+.+|+++++++|+++.+++++|.+|.
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888888888888888888888877764
No 32
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=8.4e-15 Score=89.57 Aligned_cols=83 Identities=34% Similarity=0.448 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|..+..+...|..++..| +|++|+..|.+++.+ +|.++.++.++|.++..+|++++|+..++++++++|+++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhh----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence 344666677777777776 677777777777777 67777777777777777777777777777777777777777
Q ss_pred HHHHHhccc
Q 033417 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++.+|.++.
T Consensus 80 ~~~l~~~~~ 88 (137)
T 3q49_B 80 HFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 33
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=2.8e-15 Score=109.70 Aligned_cols=96 Identities=25% Similarity=0.243 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---------------HHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHV 80 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~ 80 (119)
+...++.....+|..+..+.+.|+.+++.| +|++|+..|++++.+ .|.+ ..+|+++|.|
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGG--KYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 334455556678889999999999999998 899999999999999 6666 6899999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+|++|+.+|+++++++|+++++|+++|.+|+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 34
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.58 E-value=3.9e-14 Score=80.85 Aligned_cols=82 Identities=27% Similarity=0.415 Sum_probs=78.1
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus 7 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 56788999999999999 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 033417 109 ILCSGSHP 116 (119)
Q Consensus 109 ~~~a~~~~ 116 (119)
..+|.++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=5.8e-14 Score=82.87 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=90.4
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|.++..+...|.+++..| ++++|+..+.+++.. .|.++.++.++|.++..+|++++|+.
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 456778899999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++++++++|+++.++..++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 94 TYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999988764
No 36
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.57 E-value=6.1e-14 Score=84.07 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=89.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|..+..+...|.+++..| ++++|+..+.+++.. .|.++.++..+|.++..+|++++|+.
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~ 101 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--NYAGAVQDCERAICI----DPAYSKAYGRMGLALSSLNKHVEAVA 101 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--chHHHHHHHHHHHhc----CccCHHHHHHHHHHHHHhCCHHHHHH
Confidence 356778888888889999999999999999998 899999999999999 89999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|++..+++.+|.++.
T Consensus 102 ~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 102 YYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999999988764
No 37
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.7e-14 Score=95.47 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-------HHHHHHHHHHHHhcC
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-------VLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~~~~~l~~ 86 (119)
+++...++++...+|+++..+...|.++...| ++++|+..|++++.+ .|.++ .++.++|.++..+|+
T Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 59 KEAADYFDIAIKKNYNLANAYIGKSAAYRDMK--NNQEYIATLTEGIKA----VPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 45556666666666666666666666666666 666777767666666 66655 456666666666777
Q ss_pred HHHHHHHHHHHHHhCCC--cHHHHHHHHhccc
Q 033417 87 YRRALTDTEEALKLCPT--NVKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~ 116 (119)
+++|+..|+++++++|+ ++.+++.+|.+|.
T Consensus 133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 133 IEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 77777777777777776 6666666666553
No 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.57 E-value=3.8e-14 Score=86.39 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
.+...|..+++.| ++++|+..|++++.. +|.++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus 19 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4678999999999 999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 033417 113 GSHPN 117 (119)
Q Consensus 113 ~~~~~ 117 (119)
.++..
T Consensus 93 ~~~~~ 97 (121)
T 1hxi_A 93 VSHTN 97 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 39
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=9.9e-15 Score=88.20 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=90.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|.+...+...|.+++..| ++++|+..+.+++.. .|.++.++.++|.++..+|++++|+.
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQL----EPTFIKGYTRKAAALEAMKDYTKAMD 105 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHhhHHHHHH
Confidence 456778888888899999999999999999988 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|.+..+++.++.++..
T Consensus 106 ~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 106 VYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999999987753
No 40
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=3.5e-14 Score=100.10 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHhcHHH---------------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH
Q 033417 14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
+++...+.++..++|.. +..+.++|.++++.| +|++|+..|++++.+ +|.++.+++++|
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg 237 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRG 237 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence 45667778888888876 799999999999999 999999999999999 999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|++++|+.+|+++++++|++..+++.+|.++.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=4.8e-14 Score=90.35 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------------------------
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------- 65 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------- 65 (119)
++++..++++..++|+++.++...|.+++..| ++++|+..+.+++...|.
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777777777777777777777777 677777777776655332
Q ss_pred --CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 66 --SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..|.++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 1688888999999999999999999999999999999999999999988754
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=5.8e-14 Score=92.84 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 13 TESEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.+++...++++..++| .+...+...|.+++..| ++++|+..|.+++.. +|.++.++.++|.++..+|++++|+
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--KYKEAADYFDIAIKK----NYNLANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--cHHHHHHHHHHHHHh----CcchHHHHHHHHHHHHHcccHHHHH
Confidence 3567888999999998 78888999999999999 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCcH-------HHHHHHHhccc
Q 033417 92 TDTEEALKLCPTNV-------KVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~-------~a~~~~a~~~~ 116 (119)
..++++++++|+++ .+++.+|.++.
T Consensus 97 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 97 ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999 66888887764
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.8e-13 Score=90.77 Aligned_cols=97 Identities=26% Similarity=0.339 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...+.++...+|..+..+...|..++..| ++++|+..|++++.. .|.++.++.++|.++..+|++++|+..+
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444555566689999999999999999999 899999999999999 9999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhcccC
Q 033417 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++++++|+++.+++.+|.++..
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 44
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=1.2e-13 Score=84.68 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=81.4
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc---ccHHHHHHHHHHHHHhcCHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~~l~~~~~ 89 (119)
-++++..++++..++|+++..+.++|.+++..| +|++|+..|.++|++.|...+ ..+.+|.++|.++..+|++++
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~ 101 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh--hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHH
Confidence 357889999999999999999999999999999 999999999999999433211 224689999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHH
Q 033417 90 ALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~ 111 (119)
|+..|++++.++|+ ++....+
T Consensus 102 A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 102 AVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHhhCcC-HHHHHHH
Confidence 99999999999885 4444433
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.52 E-value=2.9e-13 Score=80.43 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=90.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|.....+...|..++..| ++++|+..+.+++.. .|.++..+.++|.++...|++++|+.
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIE 98 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHH
Confidence 356778888888889999999999999999999 899999999999999 89999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|+++.++..+|.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 99 YYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999988764
No 46
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=5.8e-14 Score=89.66 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=91.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH-HHHhcCH--HH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV-NLLLGNY--RR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~~~l~~~--~~ 89 (119)
.+++...+.++...+|.++..+...|..++..| ++++|+..|.+++.+ +|.++.++.++|.+ +...|++ ++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--DYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345677888999999999999999999999999 999999999999999 89999999999999 8899999 99
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 90 ALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+..++++++++|+++.+++.+|.++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFM 127 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-13 Score=83.23 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 14 ESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
+++...+.++...+|+. ...+...|.+++..| +|++|+..+.+++.+ .|.++.+++++|.++..+|++++|
T Consensus 45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A 118 (148)
T 2dba_A 45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--DYDKAETEASKAIEK----DGGDVKALYRRSQALEKLGRLDQA 118 (148)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CccCHHHHHHHHHHHHHcCCHHHH
Confidence 34566677777777766 788888888888888 888888888888888 888888888888888888888888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..++++++++|++..++..++.+.
T Consensus 119 ~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 119 VLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888888888888887777654
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=2.2e-14 Score=84.09 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT--NV 105 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~ 105 (119)
|.++..+...|..++..| ++++|+..|.+++.+ .|.++.++.++|.++..+|++++|+..++++++++|. +.
T Consensus 3 p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAG--NYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CSSTTGGGGHHHHHHSSC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCcHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 444556667777777777 777777777777777 7777777777777777777777777777777777777 77
Q ss_pred HHHHHHHhcccC
Q 033417 106 KVVILCSGSHPN 117 (119)
Q Consensus 106 ~a~~~~a~~~~~ 117 (119)
.+++.+|.++..
T Consensus 77 ~~~~~l~~~~~~ 88 (112)
T 2kck_A 77 DVWAAKADALRY 88 (112)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 49
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=2e-13 Score=88.87 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhcHHHH----------------HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAA----------------IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 77 (119)
+++...+.++..+.|.++ ..+...|.+++..| +|++|+..+.+++.+ +|.++.+++++
T Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l 128 (198)
T 2fbn_A 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKL 128 (198)
T ss_dssp HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence 456667777777666554 88999999999999 999999999999999 99999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|.++..+|++++|+..++++++++|++..++..++.++.
T Consensus 129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887753
No 50
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=5.9e-14 Score=91.40 Aligned_cols=87 Identities=25% Similarity=0.270 Sum_probs=79.9
Q ss_pred HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH----------------HHHHHHHHHHHHhcCHH
Q 033417 25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS----------------VLYANRAHVNLLLGNYR 88 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~~a~~~~~l~~~~ 88 (119)
...+..+..+...|..++..| +|++|+..|.+++.+ .|.++ .++.++|.++..+|+++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 105 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKN--EINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 445677899999999999999 999999999999999 66665 89999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+.+|+++++++|+++.+++.+|.++..
T Consensus 106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 106 KAIDHASKVLKIDKNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 51
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.51 E-value=8.1e-14 Score=101.94 Aligned_cols=97 Identities=22% Similarity=0.279 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhcHHH---------------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH
Q 033417 14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
+++...+.++..++|.. ...+.++|.++++.| +|++|+..|+++|.+ +|.++.+|+++|
T Consensus 285 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~~g 358 (457)
T 1kt0_A 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRG 358 (457)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHH
Confidence 45667777777777776 799999999999999 999999999999999 999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|++++|+.+|+++++++|++..++..++.++.
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 52
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=4.5e-13 Score=83.76 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|..+..+...|.+++..| +|++|+..+.+++.+ .|.++.+++++|.++..+|++++|+.
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhccHHHHHH
Confidence 345677888888888888999999999999988 899999999999999 88889999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhc
Q 033417 93 DTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.++++++++|.+..++..++.+
T Consensus 103 ~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 103 DYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999888887554443
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=5.6e-14 Score=96.76 Aligned_cols=81 Identities=35% Similarity=0.457 Sum_probs=57.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+...|+.++..| +|++|+..|++++.. +|.++.++.++|.++..+|++++|+.+++++++++|+++.+++
T Consensus 3 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3456666777777766 677777777777777 6777777777777777777777777777777777777777777
Q ss_pred HHHhccc
Q 033417 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
.+|.+|.
T Consensus 77 ~lg~~~~ 83 (281)
T 2c2l_A 77 FLGQCQL 83 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 54
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=1.4e-13 Score=88.17 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHhcHH------------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc---ccCCCcccHHHH---
Q 033417 13 TESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ---NVLSDSENSVLY--- 74 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~--- 74 (119)
.++++..++++..++|+ ++..|.++|.++.+.| +|++|+..|+++|++ .-..+|+++.+|
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 35678888999998888 3459999999999999 899999999999987 111257889999
Q ss_pred -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 75 -ANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 75 -~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+++|.++..+|++++|+.+|+++++++|++.
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999998754
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=4e-13 Score=90.12 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHh----cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417 13 TESEKADLDAIAAL----KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
.++++..++++... +|..+..+...|..++..| ++++|+..|.+++.+ +|.++.++.++|.++...|+++
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence 34666777777765 5788999999999999999 899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+..++++++++|+++.+++.+|.++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 56
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.49 E-value=6.8e-13 Score=94.91 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=88.1
Q ss_pred hhhHHHHHHHHH----------------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH
Q 033417 14 ESEKADLDAIAA----------------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77 (119)
Q Consensus 14 ~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 77 (119)
+++...+.++.. .+|..+..+.++|.++++.| +|++|+..|++++++ +|.++.+++++
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~l 313 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRR 313 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHh----CchhHHHHHHH
Confidence 455666677766 78889999999999999999 999999999999999 99999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|.++..+|++++|+.+++++++++|++..++..++.++
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998888765
No 57
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.49 E-value=5.4e-13 Score=80.59 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~ 86 (119)
.+++...+..+...+|++. ..+...|.+++..| +|++|+..|.+++.. .|++ +.+++++|.++..+|+
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--NFQLAEAQFRDLVSR----YPTHDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHcCC
Confidence 3567788888888888877 79999999999999 999999999999999 7877 8889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 87 YRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
+++|+..++++++..|+++.+...+.
T Consensus 92 ~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 92 NTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 99999999999999999987766544
No 58
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=2.2e-13 Score=83.14 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|+++..+...|.+++..| ++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHHhhHHHHHH
Confidence 356778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCC-----cHHHHHHHHh
Q 033417 93 DTEEALKLCPT-----NVKVVILCSG 113 (119)
Q Consensus 93 ~~~~al~l~p~-----~~~a~~~~a~ 113 (119)
.++++++++|+ +......+..
T Consensus 99 ~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 99 NLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 99999999987 5555554443
No 59
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=5.3e-13 Score=79.87 Aligned_cols=87 Identities=30% Similarity=0.379 Sum_probs=81.4
Q ss_pred HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+|..+..+...|..++..| ++++|+..|.+++.. .|.++.++..+|.++...|++++|+..++++++++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVE--NFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcchhhhHHHHHHHHHHHHcc--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 346788999999999999999 999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q 033417 105 VKVVILCSGSHPN 117 (119)
Q Consensus 105 ~~a~~~~a~~~~~ 117 (119)
+.+++.+|.++..
T Consensus 80 ~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 80 SKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=6.1e-13 Score=78.39 Aligned_cols=82 Identities=34% Similarity=0.459 Sum_probs=77.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..++++++++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 4678899999999999 999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhcccC
Q 033417 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
.+|.++..
T Consensus 77 ~~a~~~~~ 84 (118)
T 1elw_A 77 RKAAALEF 84 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=3.1e-13 Score=89.00 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=77.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH----------------HHHHHHHhcCHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN----------------RAHVNLLLGNYRRALTD 93 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~a~~~~~l~~~~~A~~~ 93 (119)
.+..+...|..++..| +|++|+..|++++.+ +|+++.+++. +|.++..+|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAG--QNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3567889999999999 999999999999999 9999999999 99999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcccC
Q 033417 94 TEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+++++++|+++.+++.+|.++..
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~~ 100 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQVC 100 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 62
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=82.71 Aligned_cols=85 Identities=34% Similarity=0.479 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.|..+.++...|..++..| ++++|+..|.+++.. .|.++.++.++|.++...|++++|+..++++++++|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT--CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 3557889999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 033417 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
+++.+|.++..
T Consensus 86 ~~~~la~~~~~ 96 (133)
T 2lni_A 86 GYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=5.4e-14 Score=107.29 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++..++|+++.++..+|..++..| ++++|+..|++++++ +|+++.+++++|.++..+|++++ +..
T Consensus 450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTG--DYDSATKHFTEVLDT----FPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 45666777777778888888888888888877 788888888888887 67777777777777777777777 777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+++++++|++..+++.+|.++.
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHH
Confidence 77777777777777777766654
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=1.1e-13 Score=105.60 Aligned_cols=98 Identities=15% Similarity=0.045 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHH--------HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIA--------ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
.+++.+.++++. ..+|+++..+..+|..++..| ++++|+..|++++++ +|+++.+++++|.++..+
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG--DVAKATRKLDDLAER----VGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC--CHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHc
Confidence 356778888888 888999999999999999999 999999999999999 999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999998875
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=5.5e-13 Score=97.83 Aligned_cols=98 Identities=18% Similarity=0.104 Sum_probs=92.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh--------chHhHHHHHHHHHHHHhcccCCCc---ccHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKK--------GKKHYYDAIDCYTRAINQNVLSDS---ENSVLYANRAHVN 81 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~ 81 (119)
.+++...+.++..++|+++..+..+|..+... | ++++|+..|++++.+ +| .++.+++++|.++
T Consensus 195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK--ISQQALSAYAQAEKV----DRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHH
Confidence 45778889999999999999999999999998 8 899999999999999 88 9999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 82 LLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
..+|++++|+..++++++++|+++.++..++.++.
T Consensus 269 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988764
No 66
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.46 E-value=9e-14 Score=81.92 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=67.0
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+|+++..+...|.+++..| +|++|+..|++++++ +|.++.+|+++|.++..+|++++|+..+++++++.|.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD--NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 36888999999999999999 999999999999999 99999999999999999999999999999999997754
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.46 E-value=6.7e-13 Score=92.88 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=92.8
Q ss_pred ChhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
.+++...+.++..++|. ++..+...|..+...| ++++|+..|++++.+ .|.++.++.++|.++..+|++++|
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG--EFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45778889999999998 8999999999999999 999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+..++++++++|+++.+++.+|.++.
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999998875
No 68
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.45 E-value=4.7e-13 Score=80.03 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...+.++...+|+++..+...|..++..| ++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE--QFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667888899999999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhCCCc
Q 033417 95 EEALKLCPTN 104 (119)
Q Consensus 95 ~~al~l~p~~ 104 (119)
+++++++|.+
T Consensus 77 ~~al~~~~~~ 86 (115)
T 2kat_A 77 ESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcccc
Confidence 9999998853
No 69
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=1.2e-12 Score=81.78 Aligned_cols=83 Identities=31% Similarity=0.411 Sum_probs=78.7
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..++++++++|.++.++
T Consensus 11 ~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 11 KRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 45788999999999999 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhcccC
Q 033417 109 ILCSGSHPN 117 (119)
Q Consensus 109 ~~~a~~~~~ 117 (119)
+.+|.++..
T Consensus 85 ~~~a~~~~~ 93 (166)
T 1a17_A 85 YRRAASNMA 93 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 70
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.6e-13 Score=82.25 Aligned_cols=84 Identities=32% Similarity=0.426 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
+|..+..+...|..++..| +|++|+..|++++.. .|++ ..++.++|.++..+|++++|+..++++++++|+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCG--DYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 4567888999999999999 999999999999999 8877 899999999999999999999999999999999
Q ss_pred cHHHHHHHHhccc
Q 033417 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
++.+++.+|.++.
T Consensus 98 ~~~~~~~~a~~~~ 110 (148)
T 2dba_A 98 DVKALYRRSQALE 110 (148)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998875
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.44 E-value=2e-12 Score=77.39 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=91.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+......+|.....+...|..+...| ++++|+..+.+++.. .|.++..+..+|.++...|++++|+.
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 90 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIE 90 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHhcCHHHHHH
Confidence 356777888888889989999999999999999 899999999999999 89999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++..|.+..+++.+|.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 91 YYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=4.2e-13 Score=99.81 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++...+|.++..+...|..++..| ++++|+..|++++++ +|+++.++.++|.++..+|++++|+..++
T Consensus 8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMG--DTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------CCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444445555555555555555555555 455555555555555 55555555555555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++|++..+++.+|.++
T Consensus 82 ~al~~~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 55555555555555555444
No 73
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=2.1e-13 Score=96.31 Aligned_cols=83 Identities=22% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-----------------HHHHHHHHHHHHhcCHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-----------------VLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~a~~~~~l~~~~~A 90 (119)
+..+..+...|+.+++.| +|++|+..|.+++.+ .|.+. .+++++|.|++++|+|++|
T Consensus 176 ~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEE--KLEEAMQQYEMAIAY----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHHHTCSSS--CCHHHHHHHHHHHHH----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 444555666666666655 566666666666666 55444 2556666666666666666
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+.+|+++++++|++.++++++|.+|.
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~ 275 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKA 275 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66666666666666666666665554
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=4.6e-13 Score=98.23 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=91.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---------
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL--------- 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l--------- 84 (119)
+++...+.++..++|+++.++..+|.+++..| ++++|+..|++++++ +|+ +.++.++|.++..+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--DVTSAHTCFSGALTH----CKN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC-HHHHHHHHHHHHHhccCChhhhh
Confidence 78889999999999999999999999999999 899999999999999 888 69999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|++++|+..++++++++|+++.+|+.+|.+|..
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.8e-12 Score=81.70 Aligned_cols=98 Identities=18% Similarity=0.068 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|.....+...|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+.
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQ--KYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 346677788888888888888999999999988 899999999999998 88888899999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++.+|+++.+++.+|.++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999999999988888764
No 76
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.44 E-value=8.6e-13 Score=97.12 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++.+.++++..++|+.+..+..+|.++++.| +|++|+..|++++++ +|.++.+++++|.++..+|++++|+.
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 567889999999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhc
Q 033417 93 DTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.++++++++|++..++..++.+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999888876
No 77
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=5.7e-13 Score=79.87 Aligned_cols=83 Identities=27% Similarity=0.310 Sum_probs=77.4
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---- 104 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---- 104 (119)
+.+..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..+++++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 46788999999999999 999999999999999 99999999999999999999999999999999999877
Q ss_pred ---HHHHHHHHhcccC
Q 033417 105 ---VKVVILCSGSHPN 117 (119)
Q Consensus 105 ---~~a~~~~a~~~~~ 117 (119)
+.+++.+|.++..
T Consensus 76 ~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 76 RQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999988753
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.43 E-value=7.2e-13 Score=94.80 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------SDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
...+..+...|+.+++.| +|++|+..|++++.+.+. .+|....++.++|.|++++|++++|+.+|+
T Consensus 220 ~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 345788999999999999 999999999999982111 178889999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhcccC
Q 033417 96 EALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++|+++++++++|.+|..
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQG 319 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 79
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=7.2e-13 Score=80.05 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---H
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---V 105 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~ 105 (119)
..++..|..++..| +|++|+..|.+++.. .|.++ .+++.+|.++...|++++|+..++++++.+|++ +
T Consensus 3 ~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 3 RTAYNVAFDALKNG--KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence 45678999999999 999999999999999 77766 899999999999999999999999999999999 8
Q ss_pred HHHHHHHhcccC
Q 033417 106 KVVILCSGSHPN 117 (119)
Q Consensus 106 ~a~~~~a~~~~~ 117 (119)
.+++.+|.++..
T Consensus 77 ~~~~~la~~~~~ 88 (129)
T 2xev_A 77 GGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 80
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.43 E-value=1.7e-12 Score=75.44 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=65.2
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.+.|..++..| +|++|+..|+++++. +|.++. +++++|.++..+|++++|+..|+++++++|++..++
T Consensus 4 ~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQG--DIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 56889999999 899999999999999 999999 999999999999999999999999999999999888
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=1.6e-12 Score=89.94 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=79.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHH--HhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYV--KKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
.+++...++++...+|+........+...+ ..| ++++|+..|+++++. .|.++.+++++|.++..+|++++|
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~--~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE--KLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 456778888888888876544443343232 335 799999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+..++++++++|+++.+++++|.++.
T Consensus 220 ~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 220 EGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999987664
No 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.43 E-value=1.6e-12 Score=90.54 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+++...+.++...+|. .+..+...|..+...| ++++|+..|.+++.+ .|.++.++.++|.++..+|++++|+
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4667788888899999 8999999999999999 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..++++++++|+++.+++.+|.++..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999988753
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=2.2e-12 Score=77.30 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-------HHHHHHHHHHHHHhc
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~ 85 (119)
.+++...+.++...+|..+..+...|..++..| ++++|+..|.+++.. .|.+ +.+++++|.++..+|
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~ 93 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYFKEE 93 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----ccccchhHHHHHHHHHHHHHHHHHhc
Confidence 456788899999999999999999999999999 999999999999999 6655 889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++|+..+++++++.| ++.....++.+.
T Consensus 94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 99999999999999999 688777776654
No 84
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=6.1e-13 Score=93.91 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...++++..++|.++..+...|..+...| ++++|+..|++++++ .|+++.++.++|.++...|++++|+..+
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555556666666666555 566666666666665 6666666666666666666666666666
Q ss_pred HHHHHhCCCcHHHHHHHHhcc
Q 033417 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|+++.+++.+|.++
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHhHHHHH
Confidence 666666666666666666654
No 85
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=2.2e-12 Score=91.05 Aligned_cols=97 Identities=24% Similarity=0.215 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+.+...++|+++..+...|..+...| ++++|+..|++++++ +|.++.++.++|.++...|++++|+..
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAIDTYRRAIEL----QPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556666666666766677777777777766 677777777777777 666677777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.++..+|.++.
T Consensus 294 ~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 294 YNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhCcccHHHHHHHHHHHH
Confidence 77777777777777766666553
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.42 E-value=1.2e-12 Score=97.35 Aligned_cols=99 Identities=13% Similarity=0.014 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|+++..+...|..+...| ++++|+..|++++++ +|+++.++.++|.++..+|++++|+.
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--RHAEAAVLLQQASDA----APEHPGIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456778899999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|++..+++.+|.++..
T Consensus 113 ~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 113 AYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=6.6e-13 Score=89.55 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH--------
Q 033417 15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-------- 83 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-------- 83 (119)
+++..++++...+|.+ +.++...|.+++..| +|++|+..|++++...|. +|..+.+++.+|.+++.
T Consensus 33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI-DPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHHhccccccc
Confidence 4555555555555555 666666666666666 666666666666666222 22445566666666666
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 84 LGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+|++++|+..++++++..|+++.+.
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred chhHHHHHHHHHHHHHHCcCchhHH
Confidence 6666666666666666666554444
No 88
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=6e-13 Score=93.90 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHhcHHHH-----------------HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHH
Q 033417 13 TESEKADLDAIAALKESAA-----------------IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYA 75 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 75 (119)
.+++...+.++..+.|.+. ..+.++|.++++.| +|++|+..|+++|.+ +|.++.+++
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~ 268 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTE----EEKNPKALF 268 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT--CCHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 4567788888888888877 48999999999999 999999999999999 999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 76 NRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++|.++..+|++++|+.+++++++++|++..++..++.+.
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888763
No 89
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.8e-12 Score=84.27 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|.++..+...|..++..| ++++|+..+.++++. .|.++.++..+|.++..+|++++|+.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 457888999999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhC------CCcHHHHHHHHhcc
Q 033417 93 DTEEALKLC------PTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~------p~~~~a~~~~a~~~ 115 (119)
.++++++++ |++..++..++.++
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999999999 99999999888775
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=1.3e-12 Score=85.17 Aligned_cols=95 Identities=21% Similarity=0.189 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+.++ ++| .+..+...|.+++..| ++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+..
T Consensus 23 ~~A~~~~~~a--~~~-~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 23 KGALDAFSAV--QDP-HSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHHHHHHHTS--SSC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHH--cCC-ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcccHHHHHHH
Confidence 3445555554 233 5789999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcH----------------HHHHHHHhcccC
Q 033417 94 TEEALKLCPTNV----------------KVVILCSGSHPN 117 (119)
Q Consensus 94 ~~~al~l~p~~~----------------~a~~~~a~~~~~ 117 (119)
+++++++.|.+. .+++.+|.++..
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 999999888766 999999988753
No 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.39 E-value=2.6e-12 Score=89.53 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|+++..+...|..+...| ++++|+..|++++.+ .|.++.++.++|.++..+|++++|+.
T Consensus 233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCc-----------HHHHHHHHhccc
Q 033417 93 DTEEALKLCPTN-----------VKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~-----------~~a~~~~a~~~~ 116 (119)
.++++++++|++ ..++..+|.++.
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999999988 899999998774
No 92
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=5.7e-12 Score=83.00 Aligned_cols=94 Identities=26% Similarity=0.234 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...+.++...+|.....+...|..+...| ++++|+..|.+++.. .|.++.++..+|.++...|++++|+..++
T Consensus 76 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 76 ALAFYDKALELDSSAATAYYGAGNVYVVKE--MYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344444444444444444555555555444 455555555555554 44444444555555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHhcc
Q 033417 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++|+++.+++.+|.++
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 150 RAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHH
Confidence 55555554444444444443
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.38 E-value=5e-12 Score=86.37 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|..+..+...|..+...| ++++|+..+.+++.. .|.++.++.++|.++...|++++|+.
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSN--NYDSAAANLRRAVEL----RPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 356777888888999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|+++.+++.+|.++..
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=3.3e-12 Score=84.15 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|.....+...|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+..
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLE--QPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555555555555666666666666666 566666666666666 555566666666666666666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++.+|+++.+++.+|.++
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHH
Confidence 6666666666666666555554
No 95
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=5.2e-12 Score=74.89 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=76.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..+...|..++..| ++++|+..|.+++.. .|.++.++..+|.++...|++++|+..++++++++|.++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 778899999999999 999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHhcccC
Q 033417 111 CSGSHPN 117 (119)
Q Consensus 111 ~a~~~~~ 117 (119)
+|.++..
T Consensus 83 la~~~~~ 89 (125)
T 1na0_A 83 LGNAYYK 89 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987753
No 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.38 E-value=3.2e-12 Score=91.31 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.....+..+...+|.++..+...|..+++.| ++++|+..|++++.. +|.++.+++.+|.++..+|++++|+..+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAG--QLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455667777788999999999999999988 899999999999999 8889999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHhcccC
Q 033417 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++++++|+++.+++.+|.+|..
T Consensus 84 ~~al~~~p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 84 TKVIQLKMDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 97
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=7.2e-12 Score=83.29 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh--cccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+...+.++...+|.....+...|..++..| ++++|+..|.+++. . .|.++.++.++|.++...|++++|+..
T Consensus 90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 90 ADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEASQDTL----YPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTCTT----CTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhCcc----CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333444444444444444444444444444 44444444444444 3 444444444444444444444444444
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|.++.+++.+|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHH
Confidence 4444444444444444444443
No 98
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.36 E-value=8.7e-12 Score=83.51 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|.++..+...|..++..| ++++|+..|.+++.+ +|.++.++.++|.++..+|++++|+.
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHH
Confidence 456778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHH
Q 033417 93 DTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a 112 (119)
.++++++++|++.......+
T Consensus 133 ~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 133 DLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHH
Confidence 99999999999986655443
No 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=9e-12 Score=80.92 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+++...++++...+|.....+...|..++.. | ++++|+..+++++. .|. .|....++.++|.++...|++++|+.
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLN--RPAESMAYFDKALA-DPT-YPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHT-STT-CSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc-CcC-CcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555566666666666666666666 5 56666666666666 111 55556666666666666666666666
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++++++.+|+++.+++.+|.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 135 YLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHH
Confidence 66666666666666666666554
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=2e-12 Score=81.46 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|..+..+...|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+..
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTG--AVDRGTELLERSLAD----APDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34556666666677888999999999999999 899999999999999 999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHhcccC
Q 033417 94 TEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++++|.++.+++.+|.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 101
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=3e-12 Score=85.92 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+.++...+|.++..+...|.+++..| ++++|+..+.+++.. +......+.++.++|.++..+|++++|+..
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT--CHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 45667777777777777777777777777777 777777777777773 321222255577777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|.++.+++.+|.++.
T Consensus 97 ~~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 97 YQAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHH
Confidence 77777777777777777777654
No 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=4e-12 Score=74.27 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=81.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh-cCHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-GNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-~~~~~ 89 (119)
.+++...++++...+|.....+...|..++..| ++++|+..|++++.. .|. ++.++.++|.++..+ |++++
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--RYEEAVDCYNYVINV----IEDEYNKDVWAAKADALRYIEGKEVE 95 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----SCCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccchHHHHHHHHHHHHHHhCCHHH
Confidence 457888899999999999999999999999999 899999999999999 898 999999999999999 99999
Q ss_pred HHHHHHHHHHhCCCc
Q 033417 90 ALTDTEEALKLCPTN 104 (119)
Q Consensus 90 A~~~~~~al~l~p~~ 104 (119)
|+..+++++...|.+
T Consensus 96 A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 96 AEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999999975
No 103
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.35 E-value=6.1e-12 Score=85.95 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|.++..+...|..++..| ++++|+..|++++.. .|.++.++.++|.++..+|++++|+.
T Consensus 188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--RPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 456778889999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCC------------cHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPT------------NVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~------------~~~a~~~~a~~~~~ 117 (119)
.++++++++|+ +..++..+|.++..
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999999 89999999987743
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=1.1e-11 Score=83.59 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=86.2
Q ss_pred ChhhHHHHHHHHHhcH---HHHHHHHHHhHHHHH--------hchHhHHHHHHHHHHHHhcccCCCcccHHHH-------
Q 033417 13 TESEKADLDAIAALKE---SAAIELKEKGNEYVK--------KGKKHYYDAIDCYTRAINQNVLSDSENSVLY------- 74 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~--------~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~------- 74 (119)
.+++...++++...+| ....+++..|.+++. .| ++++|+..|++++.. .|+++.+.
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDR----YPNHELVDDATQKIR 141 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHH----CcCchhHHHHHHHHH
Confidence 3567788899988866 568899999999999 88 899999999999999 77665444
Q ss_pred ----------HHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHhccc
Q 033417 75 ----------ANRAHVNLLLGNYRRALTDTEEALKLCPT---NVKVVILCSGSHP 116 (119)
Q Consensus 75 ----------~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~a~~~~ 116 (119)
+.+|.++..+|++++|+..|+++++..|+ .+.+++.+|.+|.
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 88999999999999999999999999998 5789999998875
No 105
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.34 E-value=8.6e-12 Score=82.92 Aligned_cols=97 Identities=20% Similarity=0.103 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|..+..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++...|++++|+..
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~ 127 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEM--EPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQR 127 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666667777777777777777777777777 677777777777777 677777777777777777777777777
Q ss_pred HHHHHH--hCCCcHHHHHHHHhccc
Q 033417 94 TEEALK--LCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~--l~p~~~~a~~~~a~~~~ 116 (119)
++++++ .+|.+..+++.+|.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 128 LLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhCccCcccHHHHHHHHHHHH
Confidence 777777 66777777777776654
No 106
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.34 E-value=5.4e-12 Score=86.33 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+.+..+...|..+...| ++++|+..|.+++.. .|.+...+..+|.++...|++++|+..
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVES--EHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666777777777777777777777777777 777777777777777 777777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.+++.+|.++.
T Consensus 182 ~~~al~~~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 182 FSQALSIAPEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777654
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.34 E-value=3.2e-12 Score=89.39 Aligned_cols=92 Identities=13% Similarity=-0.029 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+++..+...|..++..| ++++|+..|++++.+ +|.++.++.++|.++..+|++++|+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 45667777888888888888888888888888 788888888888888 888888888888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHH
Q 033417 94 TEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
++++++++|++..++..+
T Consensus 156 ~~~al~~~p~~~~~~~~~ 173 (365)
T 4eqf_A 156 LKNWIKQNPKYKYLVKNK 173 (365)
T ss_dssp HHHHHHHCHHHHCC----
T ss_pred HHHHHHhCccchHHHhhh
Confidence 888888888776666554
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=1.1e-11 Score=80.63 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------CCcccHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------SDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~ 80 (119)
.+++...+.++..++|..+..+...|.+++..| ++++|+..|++++.+.|. ..|..+.+++++|.+
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 456788899999999999999999999999999 999999999999998332 123455999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
+..+|++++|+..++++++++|++.......+
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 99999999999999999999998755554443
No 109
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=6.6e-12 Score=84.21 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+.++...+|..+..+...|..++..| ++++|+..|++++.+ +|.++.++.++|...+..+++++|+..
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG--NFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT--CHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666777766666 677777777666666 666666666666333334467777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhcc
Q 033417 94 TEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|++..+++.+|.++
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARAN 186 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHH
Confidence 7777777776666666666654
No 110
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.5e-12 Score=86.72 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhc---------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALK---------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~ 83 (119)
.+++...+.++..+. |..+..+...|..+...| ++++|+..|++++.+ .|.++.++.++|.++..
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--KYAEALDYHRQALVL----IPQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh----CccchHHHHHHHHHHHH
Confidence 345667777777765 666789999999999999 899999999999999 99999999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 84 LGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+|++++|+..++++++++|+++.++..+|.++
T Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999887
No 111
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=1.3e-11 Score=80.17 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=80.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-cCHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~ 91 (119)
.+++...+.++...+|..+..+...|..+...| ++++|+..|.+++.. .|.++.++.++|.++... |++++|+
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~ 97 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLK--VNDKAQESFRQALSI----KPDSAEINNNYGWFLCGRLNRPAESM 97 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCcHHHHH
Confidence 345677777888888888888888888888888 788888888888888 888888888888888888 8888888
Q ss_pred HHHHHHHH--hCCCcHHHHHHHHhccc
Q 033417 92 TDTEEALK--LCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~--l~p~~~~a~~~~a~~~~ 116 (119)
..++++++ .+|.+..+++.+|.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 98 AYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 88888888 66677788888887764
No 112
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.32 E-value=5.4e-12 Score=91.85 Aligned_cols=85 Identities=24% Similarity=0.471 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+..+..+...|..+++.| +|++|+..|++++.. +|.++.++.++|.|+..+|++++|+..|+++++++|+++.
T Consensus 21 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 94 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAK--NFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH
Confidence 3456899999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 033417 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
+++.+|.++..
T Consensus 95 ~~~~la~~~~~ 105 (537)
T 3fp2_A 95 ALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.32 E-value=1.1e-11 Score=78.92 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHH-HHHhchHhH--HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNE-YVKKGKKHY--YDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+++...+.++..++|.++..+...|.. ++..| ++ ++|+..|.+++.. +|.++.+++++|.++..+|++++
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 133 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQAS--QHMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQANYAQ 133 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcccHHH
Confidence 4567888999999999999999999999 77888 88 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHH
Q 033417 90 ALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~ 108 (119)
|+..++++++++|++....
T Consensus 134 A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 134 AIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhhCCCCccHH
Confidence 9999999999999876544
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=5e-12 Score=86.97 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|+++..+.++|.+++..| ++++|+..|++++.+ +|.++.+++++|.++..+|++++|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA 93 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456888999999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCc
Q 033417 93 DTEEALKLCPTN 104 (119)
Q Consensus 93 ~~~~al~l~p~~ 104 (119)
.++++++++|++
T Consensus 94 ~~~~al~l~p~~ 105 (281)
T 2c2l_A 94 NLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhCccc
Confidence 999999999865
No 115
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.31 E-value=4.1e-12 Score=81.25 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY----------RRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.|++|+..+++++++ +|.++.+|++.|.++..++++ ++|+..|+++|+++|++..+|+.+|.+|..
T Consensus 17 ~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 799999999999999 999999999999999999875 599999999999999999999999999863
No 116
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.31 E-value=2.2e-11 Score=83.89 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHHhcHHHH----HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417 13 TESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
.+++...++++...+|++. ..+...|.++...| ++++|+..|+++++. +|+++.++.++|.++..+|+++
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE--KPVEAIRICSEVLQM----EPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHH
Confidence 3567777888888877755 44667899999999 899999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+|+..++++++++|++..++..++.++
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999998887764
No 117
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.31 E-value=3.5e-11 Score=88.81 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHHh------cHHH-HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 13 TESEKADLDAIAAL------KESA-AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~------~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.+++.+.++++..+ +|+. +..+...|..+.+.| ++++|+..|++++++ .|+++.++..+|.++...|
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--MYDAAIDALNQGLLL----STNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhC
Confidence 45677788888777 4443 789999999999999 999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..++++++++|+++.++..++.+|..
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999998864
No 118
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-11 Score=88.35 Aligned_cols=82 Identities=27% Similarity=0.503 Sum_probs=70.2
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+..+...|..+++.| +|++|+..|++++.. +| ++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus 4 ~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNK--KYDDAIKYYNWALEL----KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hhHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhc----Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence 45788888899999888 899999999999888 77 578888889999999999999999999999999888888
Q ss_pred HHHHhcccC
Q 033417 109 ILCSGSHPN 117 (119)
Q Consensus 109 ~~~a~~~~~ 117 (119)
+.+|.++..
T Consensus 77 ~~l~~~~~~ 85 (514)
T 2gw1_A 77 LRRASANEG 85 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887753
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.30 E-value=2.2e-11 Score=83.88 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=87.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|+++..+...|.+++..| ++++|+..|.+++.+ .|.++.++..+|.++...|++++|+.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHH
Confidence 456788899999999999999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCC---CcHHHHHHHH
Q 033417 93 DTEEALKLCP---TNVKVVILCS 112 (119)
Q Consensus 93 ~~~~al~l~p---~~~~a~~~~a 112 (119)
.++++++++| +++.++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 93 DFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccChHHHHHHHH
Confidence 9999999999 8888888774
No 120
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.29 E-value=1.9e-11 Score=89.00 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|+++..+...|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+.
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--DYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 567888888888999999999999999999988 899999999999999 88888999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|+++.+++.+|.++..
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999887653
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.29 E-value=1.5e-11 Score=84.76 Aligned_cols=101 Identities=13% Similarity=-0.093 Sum_probs=76.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--------------------------- 65 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------- 65 (119)
.+++...+.++...+|+++.++..+|..+...| ++++|+..|++++...|.
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 346677788888888888888888888888887 788776665554333211
Q ss_pred ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHhcc
Q 033417 66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--VKVVILCSGSH 115 (119)
Q Consensus 66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~ 115 (119)
.+|+++.+++++|.++...|++++|+..+.++++.+|++ ..++..+|.++
T Consensus 211 al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 211 QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 167788888888888888888888888888888888877 77777777665
No 122
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.29 E-value=2.3e-11 Score=84.08 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH-HH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR-AL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~-A~ 91 (119)
.+++...++++...+|+++..+..+|.++.+.| ++++|+..|++++.+ +|+++.++.++|.++..+|++.+ +.
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~----~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG--RWEAAEGVLQEALDK----DSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 467788899999999999999999999999999 899999999999999 99999999999999999999987 56
Q ss_pred HHHHHHHHhCCCcHHHHH
Q 033417 92 TDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~ 109 (119)
..++++++++|+++.+.-
T Consensus 256 ~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 256 RYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCChHHHH
Confidence 788999999999987653
No 123
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.29 E-value=1.1e-12 Score=96.58 Aligned_cols=84 Identities=31% Similarity=0.395 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
++.+..+...|..++..| +|++|+..|++++++ +|.++.++.++|.++..+|++++|+..++++++++|+++.+
T Consensus 3 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHHHTTSSSSSSSTTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 556778889999999999 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 033417 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
++.+|.+|..
T Consensus 77 ~~~lg~~~~~ 86 (477)
T 1wao_1 77 YYRRAASNMA 86 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=3.3e-11 Score=79.95 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=72.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---H
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK---V 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~---a 107 (119)
+..++..|..++..| +|++|+..|++++...|. .|....+++.+|.+++.+|++++|+..|+++++++|+++. +
T Consensus 4 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDG--NWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 567899999999999 999999999999998322 2333578999999999999999999999999999998864 8
Q ss_pred HHHHHhccc
Q 033417 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++.+|.++.
T Consensus 81 ~~~~g~~~~ 89 (225)
T 2yhc_A 81 MYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 125
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=4.8e-12 Score=76.04 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..|++++++.+. +|.++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus 5 ~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp --CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 899999999999998211 288899999999999999999999999999999999999999999998753
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=5.2e-11 Score=89.51 Aligned_cols=100 Identities=11% Similarity=-0.033 Sum_probs=92.2
Q ss_pred CCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHh----------HHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 10 EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+.++++++..+++..++|++..+|..+|.++...| + +++++..+++++.. +|.+..+|.+|+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w 115 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCW 115 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 345778899999999999999999999999999988 6 99999999999999 9999999999999
Q ss_pred HHHHhc--CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 80 VNLLLG--NYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 80 ~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..+++ ++++++..|+++++++|.|..+|..++.++
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l 153 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 153 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 999999 779999999999999999999999988764
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=3.9e-11 Score=76.74 Aligned_cols=102 Identities=12% Similarity=-0.050 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--------------------------- 65 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------- 65 (119)
.+++...++++...+|+++.++...|..+...| ++++|+..|++++...|.
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQ 99 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 356777788888889999999999999999988 888888777665544220
Q ss_pred ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHhccc
Q 033417 66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--VKVVILCSGSHP 116 (119)
Q Consensus 66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~~ 116 (119)
.+|+++.+++++|.++...|++++|+..++++++++|++ ..+++.+|.++.
T Consensus 100 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 100 ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 167888899999999999999999999999999999876 568888887664
No 128
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.26 E-value=1.5e-10 Score=68.71 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
+...+..|..+++.+ +|..|+..|.+|+...+.. .+..+.++.++|.|++++|++++|+..++++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~--~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456789999999999 9999999999999873221 34678899999999999999999999999999999999999
Q ss_pred HHHHH
Q 033417 108 VILCS 112 (119)
Q Consensus 108 ~~~~a 112 (119)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 87776
No 129
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=5e-11 Score=82.04 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHH
Q 033417 13 TESEKADLDAIAALKESA------AIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLL 83 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~ 83 (119)
.++++..++++..+.+.. +..+.+.|..+... | ++++|+..|++++.+.|... +....++.++|.++..
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 456777788888777653 67899999999996 9 89999999999999933211 0125689999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHhccc
Q 033417 84 LGNYRRALTDTEEALKLCPTNVK-------VVILCSGSHP 116 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~-------a~~~~a~~~~ 116 (119)
+|++++|+..|++++++.|++.. +++++|.++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 5778887764
No 130
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.24 E-value=8.5e-11 Score=83.91 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=87.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++...+|.++..+...|..++..| ++++|+..|.+++.. +|.++.++..+|.++..+|++++|+.
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 356778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhCCCcH---HHHHHHHh
Q 033417 93 DTEEALKLCPTNV---KVVILCSG 113 (119)
Q Consensus 93 ~~~~al~l~p~~~---~a~~~~a~ 113 (119)
.++++++++|++. .++..++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 116 DFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999998 77766643
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=1.6e-10 Score=68.88 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=74.5
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+...|..++..| ++++|+..+.+++.. .|.++..+..+|.++...|++++|+..+++++++.|.++.+++.+
T Consensus 2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcC--cHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 46788899999999 999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HhcccC
Q 033417 112 SGSHPN 117 (119)
Q Consensus 112 a~~~~~ 117 (119)
|.++..
T Consensus 76 ~~~~~~ 81 (136)
T 2fo7_A 76 GNAYYK 81 (136)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 987754
No 132
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1e-10 Score=86.33 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++..++|.+...+...|..+.+.| ++++|+..|++++.. .|.++.++..+|.++...|++++|+..
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG--EHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT----TTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 45556666666667777777777777777777 677777777777777 677777777777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHhccc
Q 033417 94 TEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|.++.++..+|.++.
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777776653
No 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=7.9e-11 Score=78.10 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHH------------------hchHhHHHHHHHHHHHHhcccCCCcccH
Q 033417 13 TESEKADLDAIAALKESAA---IELKEKGNEYVK------------------KGKKHYYDAIDCYTRAINQNVLSDSENS 71 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~------------------~g~~~~~~A~~~~~~al~~~~~~~~~~~ 71 (119)
.++++..++++...+|++. .++...|.+++. .| ++++|+..|+++++. .|+++
T Consensus 57 ~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~P~~~ 130 (225)
T 2yhc_A 57 LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ--QARAAFSDFSKLVRG----YPNSQ 130 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCH--HHHHHHHHHHHHHTT----CTTCT
T ss_pred HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH--HHHHHHHHHHHHHHH----CcCCh
Confidence 4567788889888888765 478899998886 35 899999999999999 67665
Q ss_pred HHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHhcccC
Q 033417 72 VLY-----------------ANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KVVILCSGSHPN 117 (119)
Q Consensus 72 ~~~-----------------~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~a~~~~~ 117 (119)
.+. ..+|.+++..|++.+|+..|+++++..|+++ ++++.+|.++..
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 433 5789999999999999999999999999886 789999988754
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.5e-10 Score=81.08 Aligned_cols=100 Identities=15% Similarity=-0.020 Sum_probs=85.2
Q ss_pred CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH----HHh-
Q 033417 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLL- 84 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l- 84 (119)
+.+++++...+.+..++|++..+|..+|.++...| . ++++++..+..+|.. +|.+..+|..|+.++ ..+
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNR-NLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhcc
Confidence 45778888889999999999999999998888776 4 689999999999998 888999999998888 666
Q ss_pred --cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 85 --GNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 --~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++..+.++++.+|.|..+|+.++.++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl 154 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLV 154 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7888999999999999999988888887654
No 135
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=1.4e-10 Score=80.28 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHH-------hchHhH-------HHHHHHHHHHHh-cccCCCcccHHHHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHY-------YDAIDCYTRAIN-QNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~a 78 (119)
+++...++++...+|.++..|...|..+.. .| ++ ++|+..|++++. + +|++..+|.+.|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHH
Confidence 456677888888888888888888888764 35 54 888888888888 7 788888888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHhcc
Q 033417 79 HVNLLLGNYRRALTDTEEALKLCPTNVK-VVILCSGSH 115 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~-a~~~~a~~~ 115 (119)
.++...|++++|+..|+++++++|.++. +|..+|.++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence 8888888888888888888888888776 777777654
No 136
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=1.9e-10 Score=76.73 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHH
Q 033417 13 TESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~ 80 (119)
.+++...++++..+ +|..+..+...|..++..| ++++|+..|.+++.+.. ...|..+.++.++|.+
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 44566666666552 4889999999999999999 99999999999998731 1147788999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhcccC
Q 033417 81 NLLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~~ 117 (119)
+...|++++|+..+++++++ +|....+++.+|.++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998 57788999999988754
No 137
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=1.1e-10 Score=78.00 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~ 81 (119)
+++...+.++..+ +|..+..+...|..+...| ++++|+..|.+++.+.. ..+|....++.++|.++
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4566667776665 5889999999999999999 99999999999998731 12477889999999999
Q ss_pred HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhccc
Q 033417 82 LLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~ 116 (119)
..+|++++|+..+++++++ +|....+++.+|.++.
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7888899999998875
No 138
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=2.4e-10 Score=79.06 Aligned_cols=95 Identities=8% Similarity=0.024 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHH-hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH-HHHHHHHHHHHhcCHHHHH
Q 033417 14 ESEKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~ 91 (119)
+++...++++.. ++|+....|...|..+...| ++++|...|++++++ .|.++. +|.+.|.++.+.|++++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 678888999998 79999999999999999998 899999999999999 888876 8999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhc
Q 033417 92 TDTEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
..|+++++++|.+..+|...+..
T Consensus 155 ~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 155 MIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999998888887777665544
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=1.6e-10 Score=79.52 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-Cc-ccHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DS-ENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~a~~~~~l 84 (119)
.+++.+.+.++..+. +..+..+.+.|.++...| ++++|+..|++++.+.+.. ++ ..+.++.++|.++...
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 345666677776664 234789999999999999 9999999999999993321 11 1257899999999995
Q ss_pred -cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhcccC
Q 033417 85 -GNYRRALTDTEEALKLCPTN------VKVVILCSGSHPN 117 (119)
Q Consensus 85 -~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~ 117 (119)
|++++|+..|++++++.|.. ..++..+|.++..
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 5678888887653
No 140
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=6.8e-11 Score=85.35 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH------HHHHHHHHHHH---h
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV------LYANRAHVNLL---L 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~a~~~~~---l 84 (119)
+++...+..+...+|..+..+...|..++..| ++++|+..|.+++.. .|.++. ++.++|.++.. .
T Consensus 355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKN--DFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----hhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 34555555555556666666666666666666 566666666666665 443322 56666666666 6
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 85 GNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|++++|+..++++++++|+++.+++.+|.++
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6666666666666666666666666666554
No 141
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.5e-10 Score=78.56 Aligned_cols=92 Identities=10% Similarity=0.011 Sum_probs=77.2
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH--
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE-- 96 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~-- 96 (119)
....+...-|+....+...|..+...| ++++|+..|++++.. +|+++.++.++|.++...|++++|+..+++
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQES--NYTDALPLLXDAWQL----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCC--CHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344444556888999999999999999 999999999999999 999999999999999999999987655544
Q ss_pred --------------------------------HHHhCCCcHHHHHHHHhccc
Q 033417 97 --------------------------------ALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 97 --------------------------------al~l~p~~~~a~~~~a~~~~ 116 (119)
++.++|+++.+++.+|.++.
T Consensus 179 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 46667888888888877664
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=2.9e-10 Score=81.82 Aligned_cols=101 Identities=17% Similarity=0.067 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHh---------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHH
Q 033417 13 TESEKADLDAIAAL---------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~ 79 (119)
.+++++.+.++..+ +|..+..+.+.|.+++..| ++++|+..|++++.+.+. ..+..+.++.++|.
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 34666777776665 4556778999999999999 899999999999987432 24567889999999
Q ss_pred HHHHhc--CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 80 VNLLLG--NYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 80 ~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++.+| +|++|+..|+++++++|+++.+++.+|.++
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888765 699999999999999999999999888764
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.13 E-value=6.6e-10 Score=78.66 Aligned_cols=101 Identities=10% Similarity=-0.040 Sum_probs=76.0
Q ss_pred CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchH--------hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKK--------HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
+.+++++...+.+..++|++..+|..++.++...++. .+++++..+..++.. +|.+..+|.+|+.+..
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLS 119 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHh
Confidence 4567777778888888888888888888777766520 167778888888887 7888888888888877
Q ss_pred HhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 83 LLGN--YRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++. +++++..|.++++++|.|..+|..++.++
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7774 77888888888888888888877776553
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=3.3e-10 Score=81.52 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch--HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGK--KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+++++.+.++..++|+++..+...|..+...+. +++++|+..|++++.+ +|..+.++.++|.++...|++++|+
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHH
Confidence 346667777777888888887777766654321 1678888999999998 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
..++++++++|+++.+++.+|.+|.
T Consensus 268 ~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 268 ELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.12 E-value=6.3e-10 Score=79.28 Aligned_cols=100 Identities=10% Similarity=-0.024 Sum_probs=93.4
Q ss_pred CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-c-CHH
Q 033417 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-G-NYR 88 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~-~~~ 88 (119)
+.++++++.++.+..++|++..+|..++.++...|+ .+++++..++.+|.. +|.+..+|..|+.+...+ + +++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCChH
Confidence 357889999999999999999999999999999883 499999999999999 999999999999999998 8 899
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++..+.++++++|.|..+|..++.++
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl 169 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999887654
No 146
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=8.6e-10 Score=69.95 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=74.9
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.+......++.+.+..++.|+++.++. +.+.++++..++..++. + | ...++++++|..++++|+|.+|+.+++
T Consensus 20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 20 KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 334444445667899999999999865 23567999999999998 7 7 568999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHH
Q 033417 96 EALKLCPTNVKVVILC 111 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~ 111 (119)
++|+++|+|.++..-+
T Consensus 96 ~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHhcCCCCHHHHHHH
Confidence 9999999999887654
No 147
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.10 E-value=5.4e-10 Score=66.47 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.|+..|.+++.. +|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus 3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 578899999999 99999999999999999999999999999999999999999999999875
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=6e-10 Score=78.08 Aligned_cols=98 Identities=11% Similarity=-0.069 Sum_probs=90.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHH----HHh---chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEY----VKK---GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~---g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
-++++..++.+...+|++..+|..++.++ ... + ++++++..+.++++. +|.+..+|.+|+.+...+|
T Consensus 85 ~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~ 158 (306)
T 3dra_A 85 LYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF--DPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFD 158 (306)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999 666 5 799999999999999 9999999999999999999
Q ss_pred CHH--HHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 86 NYR--RALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~--~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++ +++..++++++.+|.|..+|..++.++.
T Consensus 159 ~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 159 LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 998 9999999999999999999999887653
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.09 E-value=1.6e-09 Score=76.67 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHH
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~ 92 (119)
++++..++.+...+|++..+|..++.++...++..+++++..+.++++. +|.+..+|.+|+.+...+|. +++++.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4677888999999999999999999999998721289999999999999 99999999999999999999 699999
Q ss_pred HHHHHHHhCCCcHHHHHHHHhccc
Q 033417 93 DTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++.++++.+|.|..+|..++.++.
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999987653
No 150
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=9.5e-10 Score=77.70 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHh-------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHh
Q 033417 14 ESEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l 84 (119)
+++...+.++..+ .+..+..+...|.++...| +|++|+..|.+++++.+.. .+....++.++|.++..+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 3455566666665 5666778888899999888 8999999999998873321 223346888889999999
Q ss_pred cCHHHHHHHHHHHHH-----hC-CCcHHHHHHHHhcccC
Q 033417 85 GNYRRALTDTEEALK-----LC-PTNVKVVILCSGSHPN 117 (119)
Q Consensus 85 ~~~~~A~~~~~~al~-----l~-p~~~~a~~~~a~~~~~ 117 (119)
|++++|+..++++++ .+ |....+++.+|.++..
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 999999999999888 35 7778888888887753
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=3.9e-10 Score=84.75 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~ 91 (119)
.+++++.++.+...+|+...+|..++.++.+.++.+|++++..+.+++++ +|.+..+|.+|+.+...+| .+++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~----d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh----ccccccHHHHHHHHHHHcCCChHHHH
Confidence 35788899999999999999999999999988722359999999999999 9999999999999999999 899999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++.++++.+|.+..+|+.++.++.
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHH
Confidence 9999999999999999999998764
No 152
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=6.9e-11 Score=75.55 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
||+....+...|..++..| ++++|+..|++++.. +|+++.+++++|.++...|++++|+..+++++.++| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQG--EHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 4555667889999999999 999999999999999 999999999999999999999999988888777777 655
Q ss_pred HHHHH
Q 033417 107 VVILC 111 (119)
Q Consensus 107 a~~~~ 111 (119)
.+..+
T Consensus 75 ~~~~~ 79 (176)
T 2r5s_A 75 YKSLI 79 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=1.7e-10 Score=79.20 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CCCcccHHHHHHHHHHHHHh
Q 033417 14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l 84 (119)
++++..+.++..+.+ ..+..+...|.+++..| +|++|+..|.+++.... ...+....+++++|.++..+
T Consensus 132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 456667777766422 13557999999999999 99999999999996421 22456677999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhcccC
Q 033417 85 GNYRRALTDTEEALKLCPTN------VKVVILCSGSHPN 117 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~ 117 (119)
|+|++|+..+++++++.+.. ..+++.+|.+|..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999986543 7899999988753
No 154
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.05 E-value=7.7e-10 Score=64.69 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 27 KESAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+|+++..+...|..++..+. ....+|...+.+++.+ +|+++.+++.+|..++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46678889999999976551 0269999999999999 99999999999999999999999999999999999874
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.4e-09 Score=73.56 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~ 81 (119)
+++...+.++..+ +|..+..+...|..+...| ++++|+..|.+++.+.. ...|....++.++|.++
T Consensus 86 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 4566666666665 5888999999999999999 99999999999998721 11477888999999999
Q ss_pred HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhccc
Q 033417 82 LLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~ 116 (119)
...|++++|+..+++++++ +|....+++.+|.++.
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 7778889999998775
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=8.6e-10 Score=75.64 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc----cHHHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLL 83 (119)
Q Consensus 14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~ 83 (119)
+++...+.++..+. ...+..+...|..++..| +|++|+..|.+++.+... .|. ...+++++|.++..
T Consensus 132 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHH
Confidence 35555666655432 223678999999999999 899999999999954211 233 23689999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCC------cHHHHHHHHhcccC
Q 033417 84 LGNYRRALTDTEEALKLCPT------NVKVVILCSGSHPN 117 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~------~~~a~~~~a~~~~~ 117 (119)
+|+|++|+..+++++++.++ ...+++.+|.+|..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999988643 27889999988753
No 157
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=2.8e-09 Score=72.15 Aligned_cols=102 Identities=18% Similarity=0.072 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~ 81 (119)
+++...+.++..+ +|..+..+...|..++..| ++++|+..|.+++.+.. ...|....++.++|.++
T Consensus 44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 4566677777763 7889999999999999999 99999999999998731 11477788999999999
Q ss_pred HHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHhcccC
Q 033417 82 LLLGNYRRALTDTEEALKLC--------PTNVKVVILCSGSHPN 117 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~~ 117 (119)
..+|++++|+..+++++++. |....+++.+|.++..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN 165 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999884 6678889999988754
No 158
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=2.5e-09 Score=73.96 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l 84 (119)
.+++...+.++..+.+ ..+..+.+.|.++.. | ++++|+..|++++.+.+... +....++.++|.++..+
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 168 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ 168 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc
Confidence 3456666666666532 346777788888877 7 78888888888888732211 11256788888888888
Q ss_pred cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417 85 GNYRRALTDTEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
|+|++|+..|++++++.|++ ..+++.+|.+++
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 88888888888888876543 235666666654
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.7e-10 Score=67.56 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc------HHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~ 86 (119)
.+++...++++..++|.++..+...|.+++..| +|++|+..|++++.+ +|++ ..+++++|.++..+|+
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--EYTQAIQMCQQGLRY----TSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999999999 999999999999999 8887 8899999999999998
Q ss_pred HHHHHHHHHH
Q 033417 87 YRRALTDTEE 96 (119)
Q Consensus 87 ~~~A~~~~~~ 96 (119)
+++|+..+++
T Consensus 94 ~~~a~~~~~~ 103 (111)
T 2l6j_A 94 VQIPVVEVDE 103 (111)
T ss_dssp CCCCSSSSSS
T ss_pred HhhhHhHHHH
Confidence 8888776554
No 160
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.96 E-value=3.6e-09 Score=69.71 Aligned_cols=96 Identities=6% Similarity=-0.121 Sum_probs=82.4
Q ss_pred CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHH--
Q 033417 12 KTESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLL-- 83 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~-- 83 (119)
..+++...+.+. .++.++.++.++|..+.. .+ ++++|+..|+++++. .+ ..+.+++++|.+|..
T Consensus 68 ~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~--d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 68 DYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGAT--DVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp CHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCC
Confidence 455677777776 445678899999999987 66 899999999999999 77 458999999999999
Q ss_pred --hcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 84 --LGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 84 --l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+++++|+..+++++++ |.++.+++.+|.+|.
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 88999999999999998 778889999999875
No 161
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.95 E-value=1.4e-08 Score=71.75 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CC-cccHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SD-SENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~a~~~~~l 84 (119)
.+++.+.+.++..+. +..+..+.+.|.++...| ++++|+..|.+++.+.+. .+ |..+.++.++|.++..+
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence 345667777777663 344578999999999999 999999999999995322 15 78899999999999999
Q ss_pred cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHhccc
Q 033417 85 GNYRRALTDTEEALKL-----CPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l-----~p~~~~a~~~~a~~~~ 116 (119)
|++++|+..+++++++ +|.....+..+|.++.
T Consensus 278 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 278 GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999998 4444444455666554
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.94 E-value=7.4e-09 Score=73.14 Aligned_cols=101 Identities=16% Similarity=0.013 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHh-------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417 15 SEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 15 ~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
.+...+.++..+ .+..+..+...|.++...| +|++|+..|.+++++.+.. .+....++.++|.++..+|
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 444555555544 2346777888888888888 8888888888888873321 2234567888888888888
Q ss_pred CHHHHHHHHHHHHH-----hCCCcHHHHHHHHhcccC
Q 033417 86 NYRRALTDTEEALK-----LCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~-----l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..++++++ .+|....+++.+|.++..
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 88888888888888 677778888888887653
No 163
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=4.1e-09 Score=73.78 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+..+...|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|++++|+..+++++++.|..
T Consensus 183 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 5667788999999999998 8999999999999883331 12234488999999999999999999999999887655
Q ss_pred ------HHHHHHHHhccc
Q 033417 105 ------VKVVILCSGSHP 116 (119)
Q Consensus 105 ------~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 261 ~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHH
Confidence 677888887764
No 164
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.93 E-value=4.5e-09 Score=74.20 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS----VLYANRAHVNLLLGNYRRALTDTEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
++..+..+...|..++..| +|++|+..|++++.+ .|.++ .++..+|.++..+|++++|+..+++++++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAG--DCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3667777888888888888 788888888888888 56554 57788888888888888888888888887
Q ss_pred ----CCCcHHHHHHHHhccc
Q 033417 101 ----CPTNVKVVILCSGSHP 116 (119)
Q Consensus 101 ----~p~~~~a~~~~a~~~~ 116 (119)
+|....+++.+|.+|.
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHH
Confidence 5667777888877664
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.92 E-value=1e-08 Score=62.71 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417 14 ESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
+++...+.+...+.++. +..+...|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 45666677766665543 358899999999999 8999999999999883321 1223678999999999999
Q ss_pred CHHHHHHHHHHHHHhCC------CcHHHHHHHHhccc
Q 033417 86 NYRRALTDTEEALKLCP------TNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p------~~~~a~~~~a~~~~ 116 (119)
++++|+..+++++++.+ ....++..+|.++.
T Consensus 104 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 99999999999998732 22566777777654
No 166
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.91 E-value=9.2e-10 Score=63.62 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHhcHHHHH-HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 13 TESEKADLDAIAALKESAAI-ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.+++...++++...+|.++. .+...|.+++..| ++++|+..|.+++.+ +|+++.++.+ +.+.+++
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~--------~~~~~a~ 81 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--DWQKALNNYQSAIEL----NPDSPALQAR--------KMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHH--------HHHHHHH
Confidence 35678889999999999999 9999999999999 999999999999999 9999888754 7788999
Q ss_pred HHHHHHHHhCCCcH
Q 033417 92 TDTEEALKLCPTNV 105 (119)
Q Consensus 92 ~~~~~al~l~p~~~ 105 (119)
..|++++.++|+++
T Consensus 82 ~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 82 NFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHCCTTHHHHCCS
T ss_pred HHHHHHhccCcccc
Confidence 99999998888764
No 167
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.91 E-value=1.8e-08 Score=67.90 Aligned_cols=77 Identities=16% Similarity=0.035 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Q 033417 29 SAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKL 100 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l 100 (119)
.++.++...|..+.. .+ ++++|+..|.++++. . ++.+++++|.++.. .+++++|+..++++++.
T Consensus 36 ~~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 36 KENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDL----N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 334455555555555 55 555555555555554 2 44455555555555 55555555555555554
Q ss_pred CCCcHHHHHHHHhcc
Q 033417 101 CPTNVKVVILCSGSH 115 (119)
Q Consensus 101 ~p~~~~a~~~~a~~~ 115 (119)
+ ++.+++.+|.+|
T Consensus 108 ~--~~~a~~~lg~~~ 120 (273)
T 1ouv_A 108 K--YAEGCASLGGIY 120 (273)
T ss_dssp T--CHHHHHHHHHHH
T ss_pred C--CccHHHHHHHHH
Confidence 2 455555555444
No 168
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.91 E-value=3e-08 Score=72.43 Aligned_cols=93 Identities=5% Similarity=-0.045 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~ 81 (119)
+++.+.+.+...+ +|..+..+.++|..+...| +|++|+..|+++|.+ .+..+|+-...++|+|.+|
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ--DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3445555555554 7889999999999999999 899999999999977 3445888999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHh-----CCCcHHHH
Q 033417 82 LLLGNYRRALTDTEEALKL-----CPTNVKVV 108 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l-----~p~~~~a~ 108 (119)
..+|++++|+..+++|+++ .|+++..-
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999986 57776543
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=5.4e-09 Score=74.48 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH---
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR--- 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~--- 88 (119)
.++++..++.+...+|++..+|..++.++... +. ++++++..+.++++. +|.+..+|..|+.+...+|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~-~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~ 179 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRIS 179 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS-CCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccc
Confidence 45788999999999999999999999999987 31 589999999999999 9999999999999999999888
Q ss_pred -----HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 89 -----RALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 -----~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++..++++++.+|.|..||..++.++..
T Consensus 180 ~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 180 EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999987643
No 170
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.89 E-value=2.6e-09 Score=62.49 Aligned_cols=51 Identities=24% Similarity=0.107 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+++.+++++|.+++.+|++++|+..++++++++|+++.+|+.+|.+|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 53 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER 53 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999998753
No 171
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=4.4e-09 Score=74.29 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=85.0
Q ss_pred hhhHHHHHHHHHhcHHHH----HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCH
Q 033417 14 ESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
+++...++++..+.|++. ..+...|..++..| ++++|+..|.+++.+... ..|....++.++|.++..+|++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence 456677788777777654 68999999999999 999999999999987322 1467788999999999999999
Q ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHhccc
Q 033417 88 RRALTDTEEALKL------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 88 ~~A~~~~~~al~l------~p~~~~a~~~~a~~~~ 116 (119)
++|+..+++++++ .|....+++.+|.+|.
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 9999999999998 6677888999888764
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=1e-08 Score=65.72 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL---CP- 102 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l---~p- 102 (119)
..+..+...|..+...| ++++|+..+.+++.+... ..+....++.++|.++..+|++++|+..+++++++ .|
T Consensus 24 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 67899999999999999 999999999999995222 15677889999999999999999999999999998 34
Q ss_pred ---CcHHHHHHHHhccc
Q 033417 103 ---TNVKVVILCSGSHP 116 (119)
Q Consensus 103 ---~~~~a~~~~a~~~~ 116 (119)
....+++.+|.++.
T Consensus 102 ~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 102 DPLAASANAYEVATVAL 118 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33566777887664
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.87 E-value=1.7e-08 Score=74.81 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
+|..+..+.++|..+...| +|++|+..|.++|++ .+..+|+-...++++|.+|..+|+|++|+..+++|+.+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQ--AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999 899999999999987 34458889999999999999999999999999999986
Q ss_pred ---CCCcHHHH
Q 033417 101 ---CPTNVKVV 108 (119)
Q Consensus 101 ---~p~~~~a~ 108 (119)
.|+++..-
T Consensus 425 ~~lG~~Hp~~~ 435 (490)
T 3n71_A 425 VTHGPSHPITK 435 (490)
T ss_dssp HHTCTTSHHHH
T ss_pred HHhCCCChHHH
Confidence 46665443
No 174
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.86 E-value=7.2e-08 Score=68.06 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCcccHHHHHHHHHHHHHhcC
Q 033417 14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~l~~ 86 (119)
+++.+.+.++..+. +..+..+.+.|.++...| ++++|+..|.+++.+... .+|..+.++.++|.++..+|+
T Consensus 199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 276 (378)
T 3q15_A 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence 45666666666542 346778999999999999 999999999999993211 178889999999999999999
Q ss_pred HHHHHHHHHHHHHhC-----CCcHHHHHHHHhcc
Q 033417 87 YRRALTDTEEALKLC-----PTNVKVVILCSGSH 115 (119)
Q Consensus 87 ~~~A~~~~~~al~l~-----p~~~~a~~~~a~~~ 115 (119)
+++|+..+++++++. |.....+..++..+
T Consensus 277 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly 310 (378)
T 3q15_A 277 TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY 310 (378)
T ss_dssp HHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999984 44444444444443
No 175
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.86 E-value=5.7e-08 Score=65.38 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----h
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----L 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l 84 (119)
.+++...+.++...+ ++.++...|..+.. .+ ++++|+..|+++++. . ++.+++++|.++.. .
T Consensus 58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDL----K--YAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHc----C--CccHHHHHHHHHHcCCCcc
Confidence 345555566655554 46666667777666 66 677777777776665 3 56666666666666 6
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++++|+..++++++++ ++.+++.+|.+|.
T Consensus 128 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 66777777777666654 4566666666553
No 176
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.84 E-value=1.1e-08 Score=71.53 Aligned_cols=101 Identities=11% Similarity=0.117 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhcHH------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417 14 ESEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
+++...+.+...+.++ .+..+...|..++..| ++++|+..|.+++.+.+.. .+....++.++|.++...|
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 281 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 281 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence 3455666666655443 3448888999999988 8999999999998883221 1122678888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417 86 NYRRALTDTEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
++++|+..+++++++.+.. ..++..+|.+|.
T Consensus 282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999988875433 667777777664
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=1.1e-08 Score=62.50 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN- 104 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~- 104 (119)
+..+..+...|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|++++|+..+++++++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 345778999999999999 9999999999999883321 11223589999999999999999999999999875542
Q ss_pred -----HHHHHHHHhccc
Q 033417 105 -----VKVVILCSGSHP 116 (119)
Q Consensus 105 -----~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 84 ~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 567788887764
No 178
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.83 E-value=1.4e-08 Score=68.76 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+..+...|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++...|++++|+..+++++++.|..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 4566778889999999988 8999999999998873321 12234488889999999999999999999998886654
Q ss_pred ------HHHHHHHHhccc
Q 033417 105 ------VKVVILCSGSHP 116 (119)
Q Consensus 105 ------~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 257 ~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 667777777664
No 179
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=3e-08 Score=68.54 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l 84 (119)
.++++..+.++..+.|.. +..+.+.|..+...| +|++|+..|++++.+.+... +.....+.++|.+++.+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ--KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 456778888888877653 788999999999999 99999999999999833311 12245788999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcH
Q 033417 85 GNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~ 105 (119)
|++++|+..+++++ ++|.+.
T Consensus 209 g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp TCHHHHHHHHHHHT-TSTTST
T ss_pred CCHHHHHHHHHHHh-CCCCCC
Confidence 99999999999999 999754
No 180
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=2.8e-08 Score=73.17 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHH-------hchHhHH-------HHHHHHHHHHh-cccCCCcccHHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHYY-------DAIDCYTRAIN-QNVLSDSENSVLYANRAH 79 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~a~ 79 (119)
.+...++++...+|.++..|...|..+.. .| +++ +|+..|++++. + .|+++.+|..+|.
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHH
Confidence 44567888888999999999999999886 57 776 89999999997 8 8999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHhcc
Q 033417 80 VNLLLGNYRRALTDTEEALKLCPTNV-KVVILCSGSH 115 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~a~~~ 115 (119)
.+...|++++|+..|+++++++|.++ .+|...|..+
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence 99999999999999999999999885 6888777654
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.83 E-value=1.8e-08 Score=68.26 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=77.2
Q ss_pred ChhhHHHHHHHHHhcHHH----HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcC
Q 033417 13 TESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~ 86 (119)
.+++...++++...+|.+ +..+...|..++..| ++++|+..+.+++.+.+. ..|..+.++..+|.++..+|+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 356777888888888876 467778888888888 888888888888876322 134556788888888888888
Q ss_pred HHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417 87 YRRALTDTEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
+++|+..+++++++.|.. ..+++.+|.++.
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 888888888888886643 337777777654
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=2.7e-08 Score=63.69 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHH------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--Cc-ccHHHHHHHHHHHHHh
Q 033417 14 ESEKADLDAIAA------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DS-ENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~a~~~~~l 84 (119)
+++...+.+... ..+..+..+...|..+...| ++++|+..+.+++.+.... ++ ....++.++|.++..+
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 120 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 456667777766 56788999999999999999 9999999999999873321 12 4567899999999999
Q ss_pred cCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHhccc
Q 033417 85 GNYRRALTDTEEALKLCP--TN----VKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p--~~----~~a~~~~a~~~~ 116 (119)
|++++|+..+++++.+.+ .+ ..++..+|.++.
T Consensus 121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999999999997632 12 234566776654
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=2.7e-08 Score=65.48 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----CHHHHH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NYRRAL 91 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~~~A~ 91 (119)
+...+.+.... .++.++..+|..++..+ ++++|+..|+++++. .++.+++++|.++.. + ++++|+
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 44455554443 46778888888888877 888888888888776 467777888888777 6 788888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 92 TDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..++++++ +.++.+++.+|.+|..
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHc
Confidence 88888754 4678888888877653
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.78 E-value=3.7e-08 Score=55.42 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.+++...+.++...+|.++..+...|..++..| ++++|+..|++++.+ +|.++.++.++|.++..+|
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcC
Confidence 456778899999999999999999999999999 999999999999999 9999999999999988765
No 185
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.78 E-value=6.6e-08 Score=70.50 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
+|..+..+.+.|..+...| +|++|+..+.++|.+ .+..+|.-...++++|.+|..+|++++|+..+++|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLG--LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999 899999999999977 34558889999999999999999999999999999986
Q ss_pred ---CCCcHH---HHHHHHhcc
Q 033417 101 ---CPTNVK---VVILCSGSH 115 (119)
Q Consensus 101 ---~p~~~~---a~~~~a~~~ 115 (119)
.|+++. ++..++.+.
T Consensus 403 ~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 403 VTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHTCTTSHHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHH
Confidence 466654 444455443
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=5.4e-08 Score=66.63 Aligned_cols=85 Identities=12% Similarity=0.004 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHH-------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHh
Q 033417 14 ESEKADLDAIAA-------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l 84 (119)
+++...+.++.. ..+..+..+.+.|.+++..| +|++|+..+.+++++.+.. .+..+.+++++|.++..+
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~--~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS--RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 445555666552 34667789999999999999 9999999999999984321 233488999999999999
Q ss_pred c-CHHHHHHHHHHHHHh
Q 033417 85 G-NYRRALTDTEEALKL 100 (119)
Q Consensus 85 ~-~~~~A~~~~~~al~l 100 (119)
| .+++|+..+++++.+
T Consensus 250 g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 250 EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 9 479999999999986
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.2e-08 Score=70.81 Aligned_cols=75 Identities=16% Similarity=-0.001 Sum_probs=56.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
..+.+.+|..+...| ++++|+..|++++.- . |. .+.+.+++|.|+.++|+.++|...+++++..+|+ ..+
T Consensus 171 ~~a~~~LG~al~~LG--~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA--LFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 446777788888877 788888888887754 2 44 5567788888888888888888888888888887 766
Q ss_pred HHHHH
Q 033417 108 VILCS 112 (119)
Q Consensus 108 ~~~~a 112 (119)
...+.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65554
No 188
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=2e-07 Score=63.78 Aligned_cols=85 Identities=16% Similarity=0.007 Sum_probs=66.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCcH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEEAL---KLCPTNV 105 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al---~l~p~~~ 105 (119)
...+...|..+...| ++++|+..|.+++.+.+.... ....+++++|.++..+|++++|+..+++++ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 344566788888888 899999999999987433211 226689999999999999999999999999 4456543
Q ss_pred ----HHHHHHHhcccC
Q 033417 106 ----KVVILCSGSHPN 117 (119)
Q Consensus 106 ----~a~~~~a~~~~~ 117 (119)
.+++++|.+|..
T Consensus 193 ~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHH
Confidence 688999988753
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=3.9e-07 Score=63.16 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc-c-HHHHHHHHHHHHHhcCHHHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE-N-SVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~a~~~~~l~~~~~A 90 (119)
-+++.+.++.+....|.+. ..+..|..+++.+ +|++|+..++.++.. .+. . ..+++++|.++..+|++++|
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~--r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE--RWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT--CHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC--CHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777777789888 9999999999999 999999999988776 322 2 46899999999999999999
Q ss_pred HHHHHHHHHhC--CC-cHHHHHHHHhcccC
Q 033417 91 LTDTEEALKLC--PT-NVKVVILCSGSHPN 117 (119)
Q Consensus 91 ~~~~~~al~l~--p~-~~~a~~~~a~~~~~ 117 (119)
+..|++++.-. |. .+.+++.+|.++..
T Consensus 191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 191 ERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp HHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 99999998644 66 77899999988753
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.63 E-value=2.3e-07 Score=68.30 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=76.7
Q ss_pred HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++.....+|.+...|...+.. .+.| ++++|...|++++.. .|.++.+|...+....+.|++++|...|++++.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456677899999999999984 6777 899999999999999 999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHH
Q 033417 100 LCPTNVKVVILCS 112 (119)
Q Consensus 100 l~p~~~~a~~~~a 112 (119)
..| ++..|+..+
T Consensus 75 ~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 75 KVL-HIDLWKCYL 86 (530)
T ss_dssp TCC-CHHHHHHHH
T ss_pred cCC-ChHHHHHHH
Confidence 999 677776655
No 191
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.63 E-value=4e-07 Score=55.90 Aligned_cols=79 Identities=19% Similarity=0.053 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHH---HHHHHHHHHhcccCCC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYD---AIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~---A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
++.....-++.|+.+.+.. +... +|..++..+.. . | ..-.+++.+|..++++|+|.+|+.+++.+|+++
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~--~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTR--YNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4456788889999998877 5555 89999998877 5 5 567899999999999999999999999999999
Q ss_pred CCcHHHHHHH
Q 033417 102 PTNVKVVILC 111 (119)
Q Consensus 102 p~~~~a~~~~ 111 (119)
|+|.+|.--+
T Consensus 105 P~n~QA~~Lk 114 (126)
T 1nzn_A 105 PQNNQAKELE 114 (126)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9998887544
No 192
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.56 E-value=7.3e-07 Score=62.37 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHh
Q 033417 15 SEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLL 84 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l 84 (119)
++...+.+...+.|.. +..+...|..++..| ++++|+..|++++.+.+.. .|....++.++|.++...
T Consensus 71 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 3445555555544332 344677888888888 8888888888888773221 144566778888888888
Q ss_pred cCHHHHHHHHHHHHHhCCC-----cHHHHHHHHhcc
Q 033417 85 GNYRRALTDTEEALKLCPT-----NVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~-----~~~a~~~~a~~~ 115 (119)
|++++|+..+++++.+.|. ...++..+|.++
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 9999999988888888764 245666666554
No 193
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.50 E-value=4.1e-06 Score=52.35 Aligned_cols=99 Identities=12% Similarity=-0.013 Sum_probs=77.0
Q ss_pred CCCCChhhHHHHHHHHHhc---HHHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHH
Q 033417 9 SEPKTESEKADLDAIAALK---ESAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL 83 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~ 83 (119)
.++.+++.+..++..-... .-..+.-++.++++.++.. .+-..+|..++..+.. .| ..-++++.+|..+++
T Consensus 14 ~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~~~~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 14 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK 89 (144)
T ss_dssp GCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CCSTHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHH
Confidence 4556666666666555433 3357788899999988762 2346789999998887 66 456888999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 84 LGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+|+|.+|..+++.+|+++|+|.++.--+
T Consensus 90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999999999998876543
No 194
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.49 E-value=6.3e-06 Score=50.91 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=76.6
Q ss_pred CCCCChhhHHHHHHHHHhc--H-HHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHH
Q 033417 9 SEPKTESEKADLDAIAALK--E-SAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL 83 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~ 83 (119)
.++.+++....++..-... + -.+..-++.++++.+... .+...+|..++..+.. .| ..-.+++.+|..+++
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yk 90 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK 90 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHH
Confidence 4556666666666554332 1 146778888988887763 2446899999999888 77 457889999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 84 LGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+|+|.+|..+++.+|+++|+|.+|.--+
T Consensus 91 lgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 91 LGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999887544
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.49 E-value=8.5e-07 Score=64.68 Aligned_cols=91 Identities=14% Similarity=-0.035 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcC
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGN 86 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~ 86 (119)
++...+.+.... .++.++...|..+.. .+ ++++|+..|+++++. . ++.+++++|.++.. .++
T Consensus 349 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~----~--~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 349 KAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK--DEQQAAIWMRKAAEQ----G--LSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHhC----C--CHHHHHHHHHHHHcCCCCCCC
Confidence 444444444443 346667777777776 55 677777777777766 3 46677777777777 677
Q ss_pred HHHHHHHHHHHHHhCC---CcHHHHHHHHhcc
Q 033417 87 YRRALTDTEEALKLCP---TNVKVVILCSGSH 115 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p---~~~~a~~~~a~~~ 115 (119)
+++|+..|+++++.+| +++.+.+.+|.++
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 7777777777777773 3777777776654
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.49 E-value=1.4e-06 Score=50.64 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=54.4
Q ss_pred CCCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417 9 SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
....++++...++++..++|+++.++..+|..++..| +|++|+..++++++..|. .|+-..+-..
T Consensus 21 ~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~ 85 (93)
T 3bee_A 21 KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--RFQEAIDTWVLLLDSNDP-NLDRVTIIES 85 (93)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTCCCT-TCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC-CccHHHHHHH
Confidence 3345788999999999999999999999999999999 999999999999999555 4444444333
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.47 E-value=1.2e-06 Score=54.09 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCH
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNY 87 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~ 87 (119)
+.+.+.+.... .++.+..++|..+.. .+ ++++|+..|+++.+. .++.+.+++|.+|.. .+++
T Consensus 44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~--d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCH
Confidence 44444444433 345666666666665 44 666666666666655 345666666666666 6666
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 88 RRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
++|+..++++.+. .++.+.+.++
T Consensus 114 ~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 114 KQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHh
Confidence 6666666666665 3455555544
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.45 E-value=1.9e-06 Score=61.83 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=70.2
Q ss_pred HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+|..+..+...+..++..| ++++|+..+++++.+ +| +...|..+|.++...|++++|+..+.+|+.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~g--d~d~A~~~l~rAl~L----n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKG--KTDESYQAINTGIDL----EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 346778888888998888888 999999999999999 76 46788899999999999999999999999999987
Q ss_pred HHHHHHHHhc
Q 033417 105 VKVVILCSGS 114 (119)
Q Consensus 105 ~~a~~~~a~~ 114 (119)
.--++....+
T Consensus 344 ~t~~~~~~l~ 353 (372)
T 3ly7_A 344 NTLYWIENGI 353 (372)
T ss_dssp HHHHHHHHSS
T ss_pred ChHHHHhCce
Confidence 6444433433
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.45 E-value=7.4e-07 Score=66.03 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=68.4
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL------ 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l------ 100 (119)
+....+.+..+...| +|++|+..|.+++++.. ..+|.-...+.++|.+|..+|+|++|+..++++|.+
T Consensus 309 a~~~le~a~~~~~qg--~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 309 SKDTLEKIDKARSEG--LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 444556666677778 89999999999998732 237788899999999999999999999999999986
Q ss_pred --CCCcHHHHHHHHhcccC
Q 033417 101 --CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 101 --~p~~~~a~~~~a~~~~~ 117 (119)
+|+-...+.++|.+|..
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 34445677888888754
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=5.6e-06 Score=50.97 Aligned_cols=91 Identities=8% Similarity=-0.099 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYR 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~ 88 (119)
.+++...+.+........+ . .|..+...+ .+++|+..|+++.+. .++.+.+++|.+|.. .++++
T Consensus 11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~--~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCC--CHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHH
Confidence 3456667777766654333 3 888888766 799999999999987 578999999999999 89999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 89 RALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+..++++.+. .++.+++.+|.+|..
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999999999987 689999999998753
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.38 E-value=2e-06 Score=59.88 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHh-----chHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHH-h
Q 033417 14 ESEKADLDAIAALKES--AAIELKEKGNEYVKK-----GKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL-L 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~-----g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~-l 84 (119)
+.+...++++..++|+ +..++.-.|..|... | +.++|..+|+++|++ +|.. ...++..|..+.. .
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--d~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--GMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--CHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--CHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhc
Confidence 3566778999999999 677999999999995 7 899999999999999 9964 8889999999888 5
Q ss_pred cCHHHHHHHHHHHHHhCCC
Q 033417 85 GNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~ 103 (119)
|+++++...+++++..+|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999998876
No 202
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.38 E-value=6.3e-07 Score=62.69 Aligned_cols=101 Identities=11% Similarity=0.024 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHhcHH-----HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcC
Q 033417 14 ESEKADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~ 86 (119)
+++...+.+.....|. .+..+...|..++..| ++++|+..+.+++.+.+.... ....++.++|.++...|+
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 3455666665555432 3446888999999999 999999999999988433211 123457889999999999
Q ss_pred HHHHHHHHHHHHHhC--------CCcHHHHHHHHhccc
Q 033417 87 YRRALTDTEEALKLC--------PTNVKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~ 116 (119)
+++|+..+++++.+. |....++..+|.++.
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 999999999999875 445667777887664
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.38 E-value=9.5e-07 Score=64.31 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHH---HhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYV---KKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---- 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---- 85 (119)
.+++...+.++. |.++.++.++|..++ ..+ ++++|+..|+++++. .++.+++++|.+|. .|
T Consensus 233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~--d~~~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG--DVEQMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCC
Confidence 345666666654 788899999999843 445 899999999999876 47888899999887 56
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 86 -NYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 -~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++.+|+..|+++. |.++.+++.+|.+|..
T Consensus 301 ~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 8999999999988 8899999999988754
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.34 E-value=1.6e-06 Score=63.38 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=64.1
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL--------CP 102 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--------~p 102 (119)
.+.+......| +|++|+..|++++++. ...+|.-...+.++|.+|..+|+|++|+..++++|.+ +|
T Consensus 302 le~~~~~~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 302 IEEFRRAKHYK--SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp HHHHHHHTTTS--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHhhhcc--CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 33334444456 8999999999999873 2236777889999999999999999999999999986 34
Q ss_pred CcHHHHHHHHhcccCC
Q 033417 103 TNVKVVILCSGSHPNQ 118 (119)
Q Consensus 103 ~~~~a~~~~a~~~~~~ 118 (119)
+-...+.++|.+|..+
T Consensus 380 ~~a~~l~nLa~~~~~q 395 (433)
T 3qww_A 380 NVASMWLKLGRLYMGL 395 (433)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556788888887543
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.34 E-value=2.9e-06 Score=59.54 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=73.5
Q ss_pred ChhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh
Q 033417 13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l 84 (119)
.+.+.+.+.++...+| +........|.+.+..|.+++.+|+..|+++.+. .|+ .+..+++ +++.+
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHc
Confidence 4567788888888888 4455555667667665544799999999999888 776 3445555 89999
Q ss_pred cCHHHHHHHHHHHHHh----------CCCcHHHHHHHHhc
Q 033417 85 GNYRRALTDTEEALKL----------CPTNVKVVILCSGS 114 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l----------~p~~~~a~~~~a~~ 114 (119)
|++++|...++.++++ +|+++.++.+++.+
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 9999999999988877 58899999776543
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=4.4e-06 Score=60.90 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=66.6
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL------- 100 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l------- 100 (119)
.........+...| +|++|+..|++++++. ...+|.-...+.++|.+|..+|+|++|+..+++++.+
T Consensus 288 ~~ll~~ie~~~~~g--~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 288 QESLKKIEELKAHW--KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 34445555666777 8999999999999873 2336777889999999999999999999999999976
Q ss_pred -CCCcHHHHHHHHhcccC
Q 033417 101 -CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 101 -~p~~~~a~~~~a~~~~~ 117 (119)
+|+-...++++|.+|..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLH 383 (429)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHh
Confidence 34445677888887754
No 207
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.27 E-value=1.3e-05 Score=58.41 Aligned_cols=75 Identities=11% Similarity=-0.076 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCC
Q 033417 31 AIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 31 ~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p 102 (119)
+.++..+|..+.. .+ ++++|+..|.++++. .++.+++++|.++.. .+++++|+..|+++++.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-- 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 4444555555554 44 455555555555443 234444445555444 44555555555554433
Q ss_pred CcHHHHHHHHhcc
Q 033417 103 TNVKVVILCSGSH 115 (119)
Q Consensus 103 ~~~~a~~~~a~~~ 115 (119)
.++.+++.+|.+|
T Consensus 145 ~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 145 GRDSGQQSMGDAY 157 (490)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 2444444444443
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.09 E-value=1.4e-05 Score=58.18 Aligned_cols=93 Identities=8% Similarity=-0.021 Sum_probs=67.8
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh----chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH---HHhc
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKK----GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN---LLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~---~~l~ 85 (119)
.+++...+.+.....+..+..+...|..+... + ++++|+..|+++. |.++.+++++|.++ ...+
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP--DEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCC
Confidence 34556666666667776777777788777554 4 7888888888875 35677788888873 3577
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++|+..|+++++. .++.+++.+|.+|.
T Consensus 266 d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 888888888888765 47888888887764
No 209
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.05 E-value=1.2e-05 Score=56.38 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=65.6
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
.++++....+.....+.-.|.++...| ++++|++.+.++|.. +| .+..++...+.+++++|+.+.|...+++
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILG--DLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcC--CHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344443332233455678999999999 999999999999998 75 8899999999999999999999999999
Q ss_pred HHHhCCC
Q 033417 97 ALKLCPT 103 (119)
Q Consensus 97 al~l~p~ 103 (119)
..+.+|+
T Consensus 162 ~~~~~~d 168 (310)
T 3mv2_B 162 YTNAIED 168 (310)
T ss_dssp HHHHSCH
T ss_pred HHhcCcc
Confidence 9999993
No 210
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.05 E-value=4.9e-05 Score=48.63 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=64.7
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CC------------------CcccHHHHHHHHHHHHHhcCHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LS------------------DSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------------~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+.+.-.|+.+|..+ +|..|...|+++|.... +. .+.+.++.+..+.|+.+++++++
T Consensus 63 ~~~l~~ladalf~~~--eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 63 YQLLVYHADSLFHDK--EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 457889999999999 99999999999987632 11 22344788999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 90 ALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+...+.+ -..-..++....+|+.|-
T Consensus 141 Ai~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 141 AIAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred HHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 99986653 223367888888888764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.97 E-value=6e-05 Score=54.05 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch-----HhHHHHHHH-HH--HHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGK-----KHYYDAIDC-YT--RAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~~~A~~~-~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.+++..++++..++|+.+.++..++.+++-... +....++.. +. .++.. .|.++.++..++..+...|
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~----~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE----LNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG----GTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc----CCcCHHHHHHHHHHHHhCC
Confidence 567788899999999988888888887753220 001112211 11 12244 6888889988888888899
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 86 NYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++|+..+++++.++|+ ..+|..+|.++
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 999999999999999974 67777777765
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.94 E-value=6.3e-05 Score=52.38 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHHHhcHHHHHHHHHHhHHHHH---h--ch----HhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh-----c
Q 033417 22 AIAALKESAAIELKEKGNEYVK---K--GK----KHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-----G 85 (119)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~---~--g~----~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-----~ 85 (119)
.+...+|+++..++=.|..... . |- .....|...+++++++ +|. +..+|..+|..|... |
T Consensus 143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCC
Confidence 3444567777776655555432 1 10 1357888999999999 998 778999999999995 9
Q ss_pred CHHHHHHHHHHHHHhCCCc-HHHHHHHHhcccC
Q 033417 86 NYRRALTDTEEALKLCPTN-VKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~-~~a~~~~a~~~~~ 117 (119)
+.++|..+|+++|+++|+. ..+++..|..+..
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 9999999999999999975 9999888887654
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=7.1e-05 Score=52.99 Aligned_cols=85 Identities=8% Similarity=-0.034 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHhcHH------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcC
Q 033417 15 SEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~ 86 (119)
.+...+.......++ .+..+...|..++..| +|.+|+..+.+++..... ..+....++...|.++..+|+
T Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 113 DQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK--QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 444444444443322 3667889999999999 899999999999876433 356778899999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 033417 87 YRRALTDTEEALKLC 101 (119)
Q Consensus 87 ~~~A~~~~~~al~l~ 101 (119)
+.+|...+++++.+.
T Consensus 191 ~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 191 LAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.82 E-value=4.3e-05 Score=56.07 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=56.7
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------------------CCcccHHHHHHHHHHHHHhcCH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------------------SDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
..+..+|.++++.| +|++|++.|.++-....+ ..|+. ...+..+|.+.|++
T Consensus 149 ~n~~~LA~~L~~Lg--~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYF 223 (449)
T ss_dssp TCHHHHHHHHHTTT--CHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhc--cHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCH
Confidence 35556666666666 566666666665222000 03333 33466789999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 88 RRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++|+..+++++.++|.+...++.+|.+|.+
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987743
No 215
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.75 E-value=9.9e-05 Score=60.81 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=57.8
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---------------------CcccHHHHHHHHHHHHHhcCHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---------------------DSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
..|...|.++.+.| ++++|++.+.+|....++. -..++..+...+..|...|.|++|
T Consensus 1222 ~ny~rLA~tLvkLg--e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred hHHHHHHHHHHHhC--CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH
Confidence 34555556666655 5666666666654441110 012344566777888999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 91 LTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|..++++|.++|.+...+..+|.+|.
T Consensus 1300 I~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1300 ITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHhccChhHhHHHHHHHHHHH
Confidence 99999999999999999988888764
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.67 E-value=0.00015 Score=59.76 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.+.+..|.+.|..+...| ++++|+..|.+ .+++..|.+.|.++.++|+|++|+..+.++++..++
T Consensus 1102 vn~p~vWsqLAKAql~~G--~~kEAIdsYiK---------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 345889999999999999 89999999955 367889999999999999999999999999988754
No 217
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=51.66 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=56.8
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC-------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD-------------SENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...+.|..+.+.| +|++|+..|.++++..+... +....++.++|.+|...|++++|+..+.+++.
T Consensus 6 ~~l~~a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566788888888 89999999999999844321 11234688999999999999999999999998
Q ss_pred hCCCcHH
Q 033417 100 LCPTNVK 106 (119)
Q Consensus 100 l~p~~~~ 106 (119)
+.+...+
T Consensus 84 ~~~~~~~ 90 (434)
T 4b4t_Q 84 YMMQFAK 90 (434)
T ss_dssp HHHTSCH
T ss_pred HHHHccc
Confidence 7665433
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.0013 Score=41.46 Aligned_cols=62 Identities=6% Similarity=-0.011 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHhc-H-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417 14 ESEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
.+.+..++.+...+ | ...+.++.+|..+++.| +|++|...++++|++ +|++..+...+-.+-
T Consensus 52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~~lL~i----eP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 36677888888888 8 67999999999999999 999999999999999 998887766655443
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.00046 Score=44.13 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=52.5
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE------NSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+.+....++..| .|+.|+.....++.+... +|+ ...++...|.+++..++|..|...|+++|++
T Consensus 20 ~~~l~dqik~L~d~~--LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAG--LHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 345677788888888 899999999998877211 121 2347788999999999999999999999875
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.34 E-value=0.0012 Score=38.43 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=41.2
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
..+..+...|.++++.| +++.|+..+.+++.+ +|+++.+..|++.
T Consensus 44 ~~~~i~~~L~~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKY 88 (104)
T ss_dssp CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHhhHHH
Confidence 46788999999999999 999999999999999 9999999888873
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.07 E-value=8.5e-05 Score=54.51 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..|..+|..+.+.| ++++|+..|.+ ..++..|...+.+...+|++++|+.+++++++..|+ +.....
T Consensus 32 ~~vWs~La~A~l~~g--~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~ 99 (449)
T 1b89_A 32 PAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETE 99 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcC--CHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHH
Confidence 569999999999999 89999999954 245567888899999999999999999998875332 444444
Q ss_pred HHhcc
Q 033417 111 CSGSH 115 (119)
Q Consensus 111 ~a~~~ 115 (119)
++.+|
T Consensus 100 Li~~Y 104 (449)
T 1b89_A 100 LIFAL 104 (449)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44443
No 222
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0074 Score=47.02 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
....+..++.-+..+| +|+-|+..-.+|+.. .|.+...|+.++.||..+|+|+.|+-...-+
T Consensus 336 ~~~LL~~Qa~FLl~K~--~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRG--DYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccC--cHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456667777777777 999999999999999 9999999999999999999999999765544
No 223
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.86 E-value=0.0066 Score=46.70 Aligned_cols=77 Identities=12% Similarity=-0.146 Sum_probs=70.0
Q ss_pred HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHH-HHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAI-DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..++++....|..+..|...+......| +.++|. ..|.+|+.. +|.+..++...+......|++++|...|++
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4577788888999999999999999988 788997 999999999 898999999999999999999999999999
Q ss_pred HHHh
Q 033417 97 ALKL 100 (119)
Q Consensus 97 al~l 100 (119)
+++.
T Consensus 404 ~l~~ 407 (679)
T 4e6h_A 404 CIDR 407 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 224
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.80 E-value=0.011 Score=45.60 Aligned_cols=92 Identities=4% Similarity=-0.026 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC---HHH
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---YRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---~~~ 89 (119)
+.+.+..++.....+|.+...|........+.+ .++.+-..|++++.. .|....+|..-+....+.++ ++.
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 445666788888999999999999999998888 899999999999999 99999999998888888899 999
Q ss_pred HHHHHHHHHHhCC--CcHHHHHH
Q 033417 90 ALTDTEEALKLCP--TNVKVVIL 110 (119)
Q Consensus 90 A~~~~~~al~l~p--~~~~a~~~ 110 (119)
+...|++++...| .+++.|..
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999883 56666543
No 225
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.45 E-value=0.028 Score=41.80 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=67.2
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+..+|...--.. .+..|...|.+|+.+ .|.+...|..+|.+....|+.-+|+-+|-+++-....++.+.-++
T Consensus 153 r~l~~LGDL~RY~~--~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 153 HCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHHcccHHHHHH--HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 35677888887777 799999999999999 999999999999999999999999999999998776677777666
Q ss_pred Hhc
Q 033417 112 SGS 114 (119)
Q Consensus 112 a~~ 114 (119)
...
T Consensus 227 ~~~ 229 (497)
T 1ya0_A 227 QKA 229 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 226
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.31 E-value=0.064 Score=38.36 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
......++...+..+...| ++.+++..+.+++.. +|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus 167 ~~~~~~a~~~~~~~~l~~g--~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 167 VEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444566677788888988 899999999999999 999999999999999999999999999988644
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.059 Score=42.05 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-------ccCCC-------cccHHHHHHHHHH
Q 033417 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-------NVLSD-------SENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-------~~~~~-------~~~~~~~~~~a~~ 80 (119)
.+.+.++++...+|.....+.......+...+.+--+|+....++++. .+..+ |....++..=+..
T Consensus 267 ~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~F 346 (754)
T 4gns_B 267 FTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNF 346 (754)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHH
Confidence 355667777777775443332222111111100345677777777632 00001 1112334444556
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++..|+|+-|+..+++|+.+-|..-..|+.++.+|..
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~ 383 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK 383 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999864
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.13 E-value=0.058 Score=32.83 Aligned_cols=60 Identities=7% Similarity=-0.014 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhc-H-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417 16 EKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 16 ~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
.+..++.+...+ | ..-+.++.+|..+++.| +|..|....+..|++ .|.+..+..-+..+.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg--~Y~~A~~~~~~lL~~----eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 455666666666 6 67888999999999999 999999999999999 998887766655543
No 229
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.86 E-value=0.048 Score=37.45 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=55.6
Q ss_pred HHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 40 EYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.+++.| ..++|+......|+. +|.++.....+-..+.-.|+|+.|...++.+.+++|.....
T Consensus 6 ~ll~~g--~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 456677 899999999999999 99999999999999999999999999999999999987544
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.57 E-value=0.17 Score=31.12 Aligned_cols=61 Identities=18% Similarity=0.010 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417 15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
+.+..++.+...+| ..-+.++..|..+++.| +|+.|....+..|++ .|++.-+..-+..+-
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg--dY~~Ar~y~d~lL~~----eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCCHHHHHHHHHHH
Confidence 45566777777777 46888999999999999 999999999999999 998888766665554
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.14 E-value=0.13 Score=37.87 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417 50 YDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+.....|++++.. .|..+.+|...+..+...|+.++|...+++++.. |.+...++..+.
T Consensus 196 ~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 196 SRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence 4456789999999 8888999999999999999999999999999999 988766654443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.88 E-value=0.083 Score=33.34 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417 48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|.+.|-..|+.++++ +...+.+|...|..-.+.|+...|.....+++.+.|...+.
T Consensus 75 D~d~aR~vy~~a~~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 75 EPDDARDYFQMARAN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp CGGGCHHHHHHHHHH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred CHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 677777777777777 66667777777777777888888888888888887765543
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.38 E-value=0.34 Score=30.12 Aligned_cols=60 Identities=18% Similarity=0.005 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417 15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
+.+..++.+...+| ..-+.++.+|..+++.| +|..|.+..+..|+. .|++.-+..-...+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~----eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHT----CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHH
Confidence 44556666666666 56788999999999999 999999999999999 89887766655444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.33 E-value=0.56 Score=29.58 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.+.+..+..++.+.+..|...+.--.++| +...|...+.+||.+
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg--nl~kARkILg~AiG~ 123 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQG--NVKKSKQLLQKAVER 123 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhcc
Confidence 333444443334444444444444444444 455555555555554
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.24 E-value=0.85 Score=32.50 Aligned_cols=81 Identities=11% Similarity=-0.005 Sum_probs=57.5
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhcc-----cCC--Ccc-----------cHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQN-----VLS--DSE-----------NSVLYANRAHVNLLLGNYRRALTDTE 95 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~-----~~~--~~~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...|......| +.+.|+..+.+|+.+- +.. .+. ...+...++.+++..|++.+++..+.
T Consensus 118 l~~~~~~~~~~~--~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 118 EKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555555566 7899999999999871 110 111 11244456677888999999999999
Q ss_pred HHHHhCCCcHHHHHHHHhccc
Q 033417 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|-+..+|..+-.++.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~ 216 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYY 216 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 999999999888877766554
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.90 E-value=1 Score=30.93 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--------------------------- 65 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------- 65 (119)
.++++..+....+.+|.++..-......+.-.| +|+.|...++....+.|.
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G--~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~~ 90 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 90 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 346677788888889999999999999999989 999999999998888442
Q ss_pred ----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 66 ----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 66 ----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..|.........+......|+.++|...-.++++..|.
T Consensus 91 P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 91 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 12233333344455566678888888888888887664
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.4 Score=34.70 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+..+|..+++.| +++.|+..|.+....+.. ......++...-.+.+..++|..+.....++..+
T Consensus 131 ~~~~~~la~~~~~~G--d~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIG--DKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHC--CCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346789999999999 999999999999887544 2345677788888888999999999999998654
No 238
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=90.92 E-value=1.3 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHH-HHHHHHHH
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNL 82 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~ 82 (119)
.+.+..+...|..+++.+ +|.+|+..++++..+ +.+|+...++ +.++.|.-
T Consensus 50 e~~~r~~i~eak~~y~~~--ny~ea~~l~~k~~n~--ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETA--NYGEALVFFEKALNL--SDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc--chhHHHHHHHHHHcc--ccCHHHHHHHHHHHHHHHH
Confidence 467888999999999999 899999999998755 0134444444 55566643
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.67 E-value=2.4 Score=27.62 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=61.6
Q ss_pred HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccC---------CCcccHH-HHHHHHHHHHHh
Q 033417 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVL---------SDSENSV-LYANRAHVNLLL 84 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~---------~~~~~~~-~~~~~a~~~~~l 84 (119)
.+-.+..+|. +.+.+-...++.+.. +|..|+..++..|.- +|. ++|.+.. ++..+|......
T Consensus 52 ~Lf~L~~lNT--~Ts~YYk~LCy~klK--dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~ 127 (242)
T 3kae_A 52 ALFHLHKLNT--CTSKYYESLCYKKKK--DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLS 127 (242)
T ss_dssp HHHHHHTCCB--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcch--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHh
Confidence 3333444444 566667788888876 999999999999833 222 3566655 455678888899
Q ss_pred cCHHHHHHHHHHHHHhCCCcHH
Q 033417 85 GNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~ 106 (119)
|.-+|||.++.++....|-.+.
T Consensus 128 g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 128 GYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHH
T ss_pred cCHHHhhhHhhhhcCCccccch
Confidence 9999999999999998875543
No 240
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.57 E-value=3.9 Score=29.96 Aligned_cols=73 Identities=8% Similarity=-0.040 Sum_probs=53.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRALTDTEEALKLCPTNVKVVI 109 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
...|..-+....+.+ +.+.|-..|.++ .. .+.....|...|..-...+ +.+.|...++.+++..|+.+..+.
T Consensus 286 ~~lw~~y~~~~~r~~--~~~~AR~i~~~A-~~----~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 286 DLLRINHLNYVLKKR--GLELFRKLFIEL-GN----EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHHHHH-TT----SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHh-hC----CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 455666666666666 789999999999 43 2335567777777766667 599999999999998888776544
Q ss_pred H
Q 033417 110 L 110 (119)
Q Consensus 110 ~ 110 (119)
.
T Consensus 359 ~ 359 (493)
T 2uy1_A 359 E 359 (493)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.38 E-value=3.8 Score=29.51 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=51.8
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+|..++..| +|.+|+..+.+.+..+.+. ......++......+..++++.++...+.++..+
T Consensus 104 kL~~l~~~~~--~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 104 RLIALYFDTA--LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 7899999999 9999999999988765442 2234567788888999999999999999988764
No 242
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.91 E-value=0.75 Score=25.71 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..+|...=+.| +|++|+.+|.++|+.
T Consensus 18 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEG--NAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 4666777788887878 899999999888876
No 243
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=89.14 E-value=0.92 Score=25.27 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...=+.| +|++|+.+|.++|+.
T Consensus 10 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEG--KVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 4666777888888888 899999999988876
No 244
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=88.87 E-value=1.1 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+..+-.++..+++.|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566677777788888888887766654
No 245
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.56 E-value=5.9 Score=29.17 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=58.9
Q ss_pred hHHHHHHHHHh--cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417 16 EKADLDAIAAL--KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93 (119)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+.++..... .| +...+...-..+.+.| ++++|...+.+..... -..+...|..+-.++.+.|++++|...
T Consensus 89 A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~g---~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 89 GFDIFKQMIVDKVVP-NEATFTNGARLAVAKD--DPEMAFDMVKQMKAFG---IQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcC---CCCccceehHHHHHHHHCCCHHHHHHH
Confidence 34444444332 23 4566777888888888 8999999998876541 122455677777788888999999998
Q ss_pred HHHHHH--hCCCcHHHHHHH
Q 033417 94 TEEALK--LCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~--l~p~~~~a~~~~ 111 (119)
+++..+ +.| +...|..+
T Consensus 163 ~~~M~~~G~~P-d~~ty~~L 181 (501)
T 4g26_A 163 DAHMVESEVVP-EEPELAAL 181 (501)
T ss_dssp HHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHhcCCCC-CHHHHHHH
Confidence 888665 345 33444443
No 246
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.24 E-value=1.2 Score=24.94 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...=..| +|++|+.+|..+|+.
T Consensus 15 ~A~~lv~~Ave~D~~g--~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSES--RYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 3555666777777777 899999999998876
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.65 E-value=1.1 Score=33.29 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++..+|........+..|...|.+|+.+.|++...|..+|.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla 196 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 3445566655667789999999999999999999999998765
No 248
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=85.90 E-value=1.8 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| +|++|+..|..+++.
T Consensus 15 Ai~lv~~Ave~D~~g--~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 15 AVAVLKRAVELDAES--RYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 555666677777777 899998888888766
No 249
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=85.73 E-value=3.8 Score=29.71 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 49 YYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
|+..+..++.|+...|. ..+....++..+|.+++-+|+|++|+..+++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34455666777766543 23456678888999999999999999999999863
No 250
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=85.71 E-value=1.9 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| +|++|+..|..+++.
T Consensus 13 A~~l~~~Av~~D~~g--~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTAT--QYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 445566666666667 899999998888876
No 251
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=85.41 E-value=2.6 Score=32.28 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
+......|...+..| +|.-|.+....++.. +|++..+...++.++.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~~----~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHh
Confidence 456778889999988 999999999999999 999999999999999988743
No 252
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=84.80 E-value=4.7 Score=29.39 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 49 YYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
|+..+..++.|+...|.. ......++..+|.+++-+|+|++|+..+++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 444566677777765532 34556788889999999999999999999999753
No 253
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=84.72 E-value=4.5 Score=29.43 Aligned_cols=51 Identities=22% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 50 YDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+..+..++.|+...|. ..+....++..+|.+++-+|+|++|+..+++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4445556667666543 23555678888999999999999999999999863
No 254
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=84.34 E-value=2.1 Score=25.43 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...=..| +|++|+.+|..++++
T Consensus 18 Ai~lv~~Ave~D~ag--~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 445566666666667 899999888888876
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=84.22 E-value=10 Score=27.82 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHh--cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417 14 ESEKADLDAIAAL--KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+++...++..... .| +...|...-..+.+.| ++++|...|.+-.+.. ..| +...|..+-.++.+.|++++|.
T Consensus 122 ~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~G--~~P-d~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 122 EMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKG--DADKAYEVDAHMVESE--VVP-EEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCC--CHHHHHHHHHHHHhcC--CCC-CHHHHHHHHHHHhhCCCHHHHH
Confidence 3455555555442 34 4666777788888988 8999999999877651 134 4556778888999999999999
Q ss_pred HHHHHHHH--hCCC
Q 033417 92 TDTEEALK--LCPT 103 (119)
Q Consensus 92 ~~~~~al~--l~p~ 103 (119)
..+++-.+ ..|+
T Consensus 196 ~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 196 KTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHTSSBC
T ss_pred HHHHHHHHhCCCcC
Confidence 99998655 4453
No 256
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=83.76 E-value=2.4 Score=27.51 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
..+...+-.|..++-++ +|.+|...+.+|+..+
T Consensus 12 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~~ 44 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDS--DFKQAEEYLSFAFEHC 44 (203)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHC
Confidence 35778888999999888 8999999999999983
No 257
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=83.67 E-value=2.6 Score=23.44 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+|.-.-+.|+|++|+..|.++++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444556666666666666654
No 258
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=83.33 E-value=5.4 Score=29.33 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcccCC-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417 50 YDAIDCYTRAINQNVLS-------DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC 101 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~-------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+..+..++.|+...|.. .+....++..+|.+++-+++|++|+..+++++...
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44445556666554431 24556788889999999999999999999999753
No 259
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.55 E-value=3.6 Score=22.38 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=21.8
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+|..+...| ++++|+.++.+||..
T Consensus 21 V~~GE~L~~~g--~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 21 IQLGEELLAQG--DYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 46788888888 888888888888888
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.49 E-value=13 Score=30.60 Aligned_cols=79 Identities=9% Similarity=-0.115 Sum_probs=56.6
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK--LCPTNVKV 107 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~a 107 (119)
.-..+...-+.+.+.| +.++|...+..-.+...+...-+...|+.+-..+.+.|+.++|+..+++-.+ +.| +..+
T Consensus 126 ~~~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT 202 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence 4445778888899999 8999999996643221001234667788888999999999999999998765 456 4555
Q ss_pred HHHH
Q 033417 108 VILC 111 (119)
Q Consensus 108 ~~~~ 111 (119)
|..+
T Consensus 203 YntL 206 (1134)
T 3spa_A 203 YAAA 206 (1134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 261
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=81.37 E-value=3.6 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+|.-.-+.|+|++|+..|.++++
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444456666666666666554
No 262
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=80.59 E-value=7.3 Score=25.21 Aligned_cols=43 Identities=7% Similarity=0.041 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL 110 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
.+-.+.++.+|..++..++|.+|..++.+|++..|.......+
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~ 53 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKR 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHH
Confidence 3456788889999999999999999999999988876544433
No 263
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=80.07 E-value=7.7 Score=28.64 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcccC-------CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 50 YDAIDCYTRAINQNVL-------SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~-------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+..+..++.|+...|. .......++..+|.+++-.++|++|+..+++++..
T Consensus 154 ~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 154 DFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666665543 13455678888999999999999999999999863
No 264
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=79.92 E-value=8.9 Score=24.10 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--Cccc--HHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSEN--SVLY-ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~--~~~~-~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.-+..|..+|+.| +|=+|-+.++......+.. .... ..+. ...|..+.+.|++.-|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g--~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSG--EFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466888999999 9999999999998773221 0011 2233 3344456678999999999999987
No 265
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.37 E-value=9.8 Score=24.27 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHH-------------HHHHHHHHHHhcCHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVL-------------YANRAHVNLLLGNYRRALT 92 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~-------------~~~~a~~~~~l~~~~~A~~ 92 (119)
+...|...|......| +++-|.++|.++=+...- ....+..- ++..-.+++.+|++++++.
T Consensus 33 ~~~~Wk~Lg~~AL~~g--n~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~ 110 (177)
T 3mkq_B 33 DSITWERLIQEALAQG--NASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSS 110 (177)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--ChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHH
Confidence 4678999999999999 999999999885333000 00001111 1222446667888888888
Q ss_pred HHHHH
Q 033417 93 DTEEA 97 (119)
Q Consensus 93 ~~~~a 97 (119)
.+.++
T Consensus 111 lL~~~ 115 (177)
T 3mkq_B 111 IFAEG 115 (177)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 77654
No 266
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=79.34 E-value=6.8 Score=28.56 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+....++..+|.+++.+++|++|+..+++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456678889999999999999999999999864
No 267
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=79.21 E-value=5.2 Score=22.31 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 72 VLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+...|.-.-..|+|++|+..|..+++.
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555556677777777777776653
No 268
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=79.16 E-value=7.4 Score=25.93 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Q 033417 48 HYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALKL 100 (119)
Q Consensus 48 ~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l 100 (119)
+-+.|...|+.|.++ .|..+|..-.+-.|.+..|+. +++.++|....++++.+
T Consensus 140 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 140 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 457888889998865 233477777778888887775 78899999999999664
No 269
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.28 E-value=11 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 70 NSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...++..+|.+++-+|+|++|+..+++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4568888899999999999999999999964
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.17 E-value=6.3 Score=21.40 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+|..+...|++++|+.++-+|+.+.|.-.+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4467778888999999999999999988655443
No 271
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=77.15 E-value=5.7 Score=21.89 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...|.-.-..|+|++|+..|..++++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444445567777777777766653
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.75 E-value=17 Score=27.49 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRA 59 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
...|...|..+.+.+ +++.|+..|.++
T Consensus 681 ~~~W~~la~~al~~~--~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRF--NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcC--CHHHHHHHHHHc
Confidence 567899999999999 999999999885
No 273
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=76.72 E-value=5.8 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..+|.-.-..|+|++|+..|..+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444455666666666665554
No 274
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=76.62 E-value=14 Score=24.63 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|+++. |..+|..-.+..|.+..|+. +++.++|....+++++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888887652 33356555667777777776 7999999998888775
No 275
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=76.58 E-value=11 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++ .|..+|..-.+..|.+..|+. +++.++|...++++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788888765 233356555666777777764 6999999998888764
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=76.16 E-value=13 Score=24.12 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
++.-.-.+..++-.| +|..|+-.+. . -+..+..+..+.|+.++++|..|+......+
T Consensus 33 ~eY~lL~~I~Lyyng--EY~R~Lf~L~---~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 33 PEYRMLMSIVLYLNG--EYTRALFHLH---K------LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp -CTHHHHHHHHHHTT--CHHHHHHHHH---T------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHhhhhhhhhhcc--hHhHHHHHHH---h------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677778878 8888877652 2 2456666778999999999999999999998
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.31 E-value=7.6 Score=29.14 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=52.3
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc-CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV-LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+.-.-..|...+ .|++|.....++.-... ..++.....++..|.++...++|.+|..++..|+...|.+
T Consensus 230 qa~l~nllLRnYL~~~--~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNG--EVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSS--CSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccC--cHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4444545555566666 89999998888742111 0123446778889999999999999999999999987754
No 278
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=75.10 E-value=6.1 Score=23.41 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 75 ANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+|.-.-..|+|++|+..|..+++
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334333445666666666666554
No 279
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=74.98 E-value=14 Score=27.43 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcccC---------CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 50 YDAIDCYTRAINQNVL---------SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.-+..++.|+...|. .......++..+|.+++-.++|++|...+++++..
T Consensus 168 ~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 168 KWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3334445556555441 13445678888999999999999999999999863
No 280
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=74.08 E-value=9.8 Score=21.55 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...|..+|+.| +|=+|-+.++..... .|.. ..+....|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g--~~~eaHEvlE~~W~~----~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAG--RYYEVHEVLEPYWLK----ATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCC--ChHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 35678899998 999999999999887 4332 22333344455567887 8888998876
No 281
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=73.45 E-value=19 Score=24.49 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++ .|..+|..-.+..|.+..|+. +++.++|+...+++++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5677888888865 233366666677777777776 7999999998888764
No 282
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.22 E-value=5.4 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhc
Q 033417 48 HYYDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
.|++|..+.+++|.+
T Consensus 18 ~h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 366666666666666
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=73.01 E-value=6 Score=22.67 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.1
Q ss_pred HHHhHHHHHhchHhHHHHHHHHHHHHhccc
Q 033417 35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNV 64 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~ 64 (119)
..+|..++..| +++.|+.+|.+||..+|
T Consensus 24 V~lGE~L~~~g--~~e~av~Hf~nAl~Vc~ 51 (95)
T 1om2_A 24 IQLGEELLAQG--DYEKGVDHLTNAIAVCG 51 (95)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHcC
Confidence 57888899988 89999999999999843
No 284
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.03 E-value=5.2 Score=22.02 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 74 YANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...+|.=+..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34556667778999999999988876
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=71.64 E-value=10 Score=21.62 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+-.+-.++..+.+.| .|++||++..++..+
T Consensus 15 AH~~~RrAe~ll~~g--kydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAG--KYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 445556778888888 799999887776644
No 286
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=70.72 E-value=9.7 Score=27.87 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..+..++.|+...|. .......++..+|.+++.+++|++|+..+++++.
T Consensus 155 ~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 155 AQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4445556666666543 2345567888899999999999999999999874
No 287
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=70.67 E-value=21 Score=24.02 Aligned_cols=50 Identities=12% Similarity=-0.046 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++ .|..+|..-.+-.|.+..|+. +++.++|...++++++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788888765 233366556667777777775 7999999998888765
No 288
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.44 E-value=19 Score=27.13 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 68 SENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.++...|.++|...++.++++.|..+|.++
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 356788999999999999999999999986
No 289
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=69.93 E-value=14 Score=25.29 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcc------cCCCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHh
Q 033417 50 YDAIDCYTRAINQN------VLSDSENSVLYANRAHVNL-LLGNYRRALTDTEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~------~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~l 100 (119)
+.|...|+.|.++. |..+|..-.+..|.+..|+ -+++.++|....+++++-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56777788887652 3336666667777777777 479999999999998764
No 290
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=69.64 E-value=23 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.021 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++ .|..+|..-.+..|.+..|+. +++.++|...++++++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788888765 233356666667777777776 6999999998888765
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.22 E-value=14 Score=29.48 Aligned_cols=52 Identities=10% Similarity=-0.023 Sum_probs=37.0
Q ss_pred HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
....+...| .++-+ ...+.. .|.++..-+-+|.+++.+|++++|..+|++|-
T Consensus 816 l~~~L~~~~--~~~~a----~eL~~~----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFK--QYNAC----MQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTT--CHHHH----HHHGGG----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhc--HHHHH----HHHHhh----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555 45433 234455 66666666789999999999999999999753
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.36 E-value=11 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 76 NRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+|..++..|+++.|+.++-+|+.+.|.-.+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4577777788888888888888888775443
No 293
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=67.01 E-value=16 Score=28.04 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
....+|...+..|+|.-|.+.++.++..+|+|.++...++.+|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 45566777888999999999999999999999999988887764
No 294
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=66.39 E-value=22 Score=22.59 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=39.3
Q ss_pred HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+-......| +++.|.+.... + ++...|..+|..-+..|+++-|..+|.++-
T Consensus 11 rF~LAL~lg--~l~~A~e~a~~---l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 11 RFDLALEYG--NLDAALDEAKK---L------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHTT--CHHHHHHHHHH---H------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHhcC--CHHHHHHHHHH---h------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344556667 78888876543 2 457789999999999999999999998853
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.22 E-value=15 Score=27.04 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=46.3
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhccc--C----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCc
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQNV--L----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL-CPTN 104 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~ 104 (119)
.+-..||+.+ +..-|-..+...-.... . +....++.++..|..++..++|.+|..++..|++. .|..
T Consensus 181 ~L~kiYFkl~--~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIE--SPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSS--CCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcC--CHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3446677777 56666555533211100 0 12255788899999999999999999999999998 7754
No 296
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=64.61 E-value=30 Score=23.46 Aligned_cols=50 Identities=22% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcc---cCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQN---VLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~---~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++. |..+|..-.+..|.+..|+. +++.++|+..++++++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778899888763 22245455566677777775 7999999999888875
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.63 E-value=40 Score=27.00 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=53.0
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhcc--cC-----------------CCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQN--VL-----------------SDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--~~-----------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
-+-+|.+++..| ++++|..+|.+|-.-. +. ........|.+....+...+.++-++..+
T Consensus 843 ~yv~gr~~L~~g--e~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 843 VYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 467999999999 9999999998864211 00 01223457788888888999999999999
Q ss_pred HHHHHh-CCCcHH
Q 033417 95 EEALKL-CPTNVK 106 (119)
Q Consensus 95 ~~al~l-~p~~~~ 106 (119)
+.||+. .+++..
T Consensus 921 ~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 921 LLADASKETDDED 933 (950)
T ss_dssp HHHHHTCCSCCHH
T ss_pred HHHHhhcccCCcc
Confidence 999984 455544
No 298
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=62.03 E-value=30 Score=25.45 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcccCC-----CcccHHHHHHHHHHHH------HhcCHHHHHHHHHHHHH
Q 033417 49 YYDAIDCYTRAINQNVLS-----DSENSVLYANRAHVNL------LLGNYRRALTDTEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~a~~~~------~l~~~~~A~~~~~~al~ 99 (119)
|+.-+..++.|+...|.. .+....++..+|.+++ ..++|++|+..+++++.
T Consensus 161 y~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 161 FNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 344455566676665432 3445567777888777 46899999999999985
No 299
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=64.96 E-value=1.8 Score=33.38 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
++.....+...+..| +|.-|....+.++.. +|++..+...++.++.++|.-.+.
T Consensus 461 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~a----~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKG--DYRWAVQLGNHLVFA----DPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 455677888888888 999999999999999 999999888899998888765544
No 300
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=59.19 E-value=35 Score=24.87 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcccCC------CcccHHHHHHHHHHHHHh------cCHHHHHHHHHHHHH
Q 033417 50 YDAIDCYTRAINQNVLS------DSENSVLYANRAHVNLLL------GNYRRALTDTEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~------~~~~~~~~~~~a~~~~~l------~~~~~A~~~~~~al~ 99 (119)
+..+..++.|+...|.. .+....++..+|.+++-. ++|++|+..+++++.
T Consensus 170 ~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 170 TYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 44556677777665531 234566788888888764 899999999999986
No 301
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=57.80 E-value=36 Score=25.05 Aligned_cols=60 Identities=7% Similarity=-0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcccCC-----------CcccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHh-----CCCcH
Q 033417 50 YDAIDCYTRAINQNVLS-----------DSENSVLYANRAHVNLLL--------GNYRRALTDTEEALKL-----CPTNV 105 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~a~~~~~l--------~~~~~A~~~~~~al~l-----~p~~~ 105 (119)
+.-+..++.|+...|.. ......++..+|.+++-. ++|++|+..+++++.. .|++.
T Consensus 164 ~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~~~y~L~~~y~ 243 (535)
T 3ihv_A 164 EYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYE 243 (535)
T ss_dssp HHHHHHHHHHHHHCCCTTTCCSSSCCTTSCCHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHTTSCCCCSCHH
T ss_pred HHHHHHHHHHHHhCCcccccccccccccCccHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhcCCCcCcccHH
Confidence 33345566666654432 234456778888888886 5799999999999863 45555
Q ss_pred HHHH
Q 033417 106 KVVI 109 (119)
Q Consensus 106 ~a~~ 109 (119)
..+.
T Consensus 244 ~~F~ 247 (535)
T 3ihv_A 244 QLWK 247 (535)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 302
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=57.73 E-value=28 Score=25.35 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhc-ccC----CCcccHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHHh
Q 033417 51 DAIDCYTRAINQ-NVL----SDSENSVLYANRAHVNLLLG---------NYRRALTDTEEALKL 100 (119)
Q Consensus 51 ~A~~~~~~al~~-~~~----~~~~~~~~~~~~a~~~~~l~---------~~~~A~~~~~~al~l 100 (119)
..+..++.|+.. .|. .......++..+|.+++-++ +|++|+..+++++..
T Consensus 163 ~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 163 IIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp THHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 455566777765 553 23455678888999999888 899999999999873
No 303
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.69 E-value=32 Score=21.51 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+-++.++..+|.+|-++|+..+|-...++|.+-
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6677999999999999999999999988888764
No 304
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=55.34 E-value=67 Score=24.48 Aligned_cols=53 Identities=13% Similarity=-0.004 Sum_probs=42.2
Q ss_pred HHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.++.| +++.|...+.+.-.. ....+...+-+|.++..+|+..+|...|+++.+
T Consensus 295 Alr~~--d~~~a~~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTG--DRRGLNTWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHT--CHHHHHHHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCC--CHHHHHHHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45667 899999988764333 345567778889999999999999999999876
No 305
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=54.51 E-value=20 Score=20.20 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHhc
Q 033417 48 HYYDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
.|+.|..+..++|..
T Consensus 12 ~h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 12 FHKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 355555555555555
No 306
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.20 E-value=21 Score=29.06 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEA 97 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.|.++..-+-+|.+++..|++++|..+|.++
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5666666688999999999999999999886
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.26 E-value=69 Score=24.04 Aligned_cols=36 Identities=14% Similarity=-0.072 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL 65 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~ 65 (119)
...+..++-.|....-.+ +|.+|.+++..|+..+|.
T Consensus 267 ~q~~rY~YY~GRI~a~q~--~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQL--DYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCc
Confidence 345778888999999988 899999999999998554
No 308
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.35 E-value=48 Score=26.99 Aligned_cols=67 Identities=16% Similarity=0.035 Sum_probs=50.4
Q ss_pred HHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-------------------CCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417 34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-------------------SDSENSVLYANRAHVNLLLGNYRRALTDT 94 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
-+-+|.+++..| ++++|..+|.++-.-... .....+..|......+.+.+.++.++...
T Consensus 845 ~yl~g~~~L~~g--e~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 845 VYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 477899999999 999999999887422100 01223456777777888889999999999
Q ss_pred HHHHHhCC
Q 033417 95 EEALKLCP 102 (119)
Q Consensus 95 ~~al~l~p 102 (119)
+.|++..+
T Consensus 923 ~lAi~~~~ 930 (1139)
T 4fhn_B 923 LLADASKE 930 (1139)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 99998654
No 309
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.68 E-value=65 Score=23.23 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-ccCCC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-NVLSD-S-ENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+.+......+...+ ||..|...++++-.. ..... | ....++...|..+..-++|.+|-.+|.++...
T Consensus 176 kve~~l~q~rl~l~~~--d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 176 KIQFILEQMELSILKG--DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566677777788877 899998888886421 11111 2 23456677788888899999999999998764
No 310
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=49.69 E-value=34 Score=19.80 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=27.7
Q ss_pred hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
.+.-++..+.-.+....+.| +|++|-..+.++=+
T Consensus 15 ~~aG~ArS~~~eAl~~Ak~g--~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 15 AYAGDARSKLLEALKAAENG--DFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 35557888888999999999 99999988877643
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.59 E-value=65 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=22.6
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417 80 VNLLLGNYRRALTDTEEALKLCPTNVK 106 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
..++.++|..|...+++.|++.|....
T Consensus 216 ~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 356789999999999999999986543
No 312
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=48.88 E-value=16 Score=26.58 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.++..+..+|..|+ .|+.|+..|...+..
T Consensus 92 e~L~~~~i~~f~kg~-~~E~ai~l~k~L~~~ 121 (436)
T 2yin_A 92 ETLYETIIGYFDKGK-MWEEAISLCKELAEQ 121 (436)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence 456778888898886 999999999998865
No 313
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=45.93 E-value=42 Score=19.57 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHH
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al 60 (119)
+--++......+....+.| +|++|-..+.++=
T Consensus 18 ~aG~Ars~~~eAl~~Ak~g--dfe~A~~~l~eA~ 49 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQG--KMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 4456888888888889988 8999988887764
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.00 E-value=53 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
....+.+|..-|..+...|++.+|-..|+.+++-+-
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 456678888889999999999999999999998653
No 315
>3jq0_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Probab=43.48 E-value=49 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHH
Q 033417 69 ENSVLYANRAHVNLLLG--------NYRRALTDTEEALK 99 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~--------~~~~A~~~~~~al~ 99 (119)
....++..+|.+++-.+ +|++|+..+++++.
T Consensus 181 tk~aA~allArvyL~~~~~~~~~~~~~~~A~~~a~~vi~ 219 (493)
T 3jq0_A 181 SAAATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVKK 219 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHh
Confidence 44567778888888766 68999999999985
No 316
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=43.29 E-value=1.4e+02 Score=24.76 Aligned_cols=65 Identities=6% Similarity=-0.050 Sum_probs=51.0
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALK 99 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~ 99 (119)
+...|.-+-..+.+.| ++++|...|.+-.+.. ..-+...|..+-.++.+.|+ .++|...+++-.+
T Consensus 164 dvvTYNtLI~Glck~G--~~~eA~~Lf~eM~~~G---~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQG--AFKELVYVLFMVKDAG---LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4677888888999999 8999999999886542 23356667878788889998 5788888887655
No 317
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=42.53 E-value=54 Score=19.73 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+.+.|..++..| |+-+|-+.|-+|++-
T Consensus 6 lAe~yL~EA~ell~kG--D~vQAsEK~ykAaee 36 (129)
T 2jpu_A 6 SAEVYYEEAEEFLSKG--DLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 3667777888888877 787777776666544
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=42.44 E-value=41 Score=24.39 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 52 AIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 52 A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++..|.++|....+- .....--|...|-++++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 567777777652210 112233455667899999999999998887654
No 319
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=42.29 E-value=24 Score=16.22 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHhc
Q 033417 48 HYYDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
.|++|+..|..++.-
T Consensus 17 ayDKAVaSfk~alk~ 31 (37)
T 3s6n_M 17 AYDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHHhc
Confidence 688999999888765
No 320
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=42.28 E-value=54 Score=20.01 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+..+...|..+...| +.+.|.-.|-+.+.+
T Consensus 38 rta~~llr~A~~y~~eg--d~e~AYily~R~~~L 69 (146)
T 2xze_A 38 RSGVEIIRMASIYSEEG--NIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 35788889999999999 999999998886555
No 321
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=41.80 E-value=5.4 Score=27.08 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+..+|..+=+.| +|++|+.+|..++++
T Consensus 23 Ai~lv~~AVe~D~~g--~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 23 AATVLKRAVELDSES--RYPQALVCYQEGIDL 52 (257)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 444566666666777 899999999999877
No 322
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=40.24 E-value=58 Score=19.36 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.9
Q ss_pred HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
.-.+--++..+.-.+....+.| +|++|-..+.++=+
T Consensus 30 II~~aG~ARS~~~eAl~~Ak~g--dfe~A~~~l~eA~e 65 (120)
T 3l8r_A 30 IILNSGNARSIVHEAFDAMREK--NYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 3345667888899999999998 99999988887743
No 323
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=36.67 E-value=73 Score=19.48 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|..+...| |.+.|.-.|-+.+.+
T Consensus 41 sa~~L~r~A~~y~~EG--d~E~AYilymRy~~L 71 (144)
T 2a9u_A 41 SALKIFKTAEECRLDR--DEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 5778889999999999 999999888886544
No 324
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.62 E-value=99 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-ccC
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-NVL 65 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~ 65 (119)
..+..++-.|..++-.+ +|.+|...+.+|+.. +|.
T Consensus 218 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNS--QVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHC
T ss_pred ceEeeeHHHHHHHHHHc--cHHHHHHHHHHHHHhcCCc
Confidence 46788899999999988 999999999999998 775
No 325
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.35 E-value=57 Score=24.15 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 52 AIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 52 A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++..|.++|....+- .....--|...|-++++.+++.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 466677776552110 112233455667899999999999998887654
No 326
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.32 E-value=1.2e+02 Score=21.84 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=49.4
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+.....++..++..| ++.+|...+.....-... ....-..++..-...++..++|..|...++++.
T Consensus 137 arl~~~La~i~e~~g--~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEG--KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444567889999999 999999998886532111 123345677777888999999999999999864
No 327
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=36.08 E-value=24 Score=25.39 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417 69 ENSVLYANRAHVNLLLGNYRRALTDTEEAL 98 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
....++..+|.+++-+|+|++|+..+++++
T Consensus 199 tk~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 199 TQAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp BHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 445678888999999999999999999987
No 328
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.57 E-value=78 Score=21.06 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhc-------HHHHHHHH-HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417 14 ESEKADLDAIAALK-------ESAAIELK-EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~-------~~~~~~~~-~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
+.++..++.+.... ...-..+. +...++.+.| .|++|.+.+.+...- ++.+-.+...+..+-.+.+
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~--~f~kA~eiLkr~~~~----~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNK--EFEKASKILKKHMSK----DPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHSTT----CGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHhcC----CCCchHHHHHHHHHHhccC
Confidence 45566666655543 22222233 3334456777 899999999999887 6666656666655544433
Q ss_pred CH
Q 033417 86 NY 87 (119)
Q Consensus 86 ~~ 87 (119)
.+
T Consensus 163 ~~ 164 (235)
T 3bu8_A 163 LA 164 (235)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 329
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.26 E-value=79 Score=19.50 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
....+.+|..-|..+...|++.+|-..|+.+++-+..-.
T Consensus 97 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456788899999999999999999999999999764433
No 330
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=34.67 E-value=67 Score=18.46 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417 27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN 61 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
+.-++..+...+....+.| +|++|-..+.++=+
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g--~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQG--DFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 4556888888899999988 89999888877643
No 331
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=40.16 E-value=8.6 Score=29.63 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417 73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
....+|...+..|+|.-|.+.++.++..+|+|.++...++.+|.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~ 507 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQ 507 (668)
Confidence 344566677788999999999999999999999999888887754
No 332
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.45 E-value=68 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 52 AIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 52 A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++..|.+||....+. .....--|...|-++++.++|.+|+..+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 456666666542111 112233455668888999999999999887654
No 333
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=32.27 E-value=1.6e+02 Score=22.12 Aligned_cols=37 Identities=32% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHHhc
Q 033417 49 YYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
-+.|+..|++|++.. ...++.....+.+.+.-|...|
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 466777777777552 2335666666666665544433
No 334
>3nqp_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Probab=31.86 E-value=1.3e+02 Score=21.96 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcccCC---------Cc---ccHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHH
Q 033417 49 YYDAIDCYTRAINQNVLS---------DS---ENSVLYANRAHVNLLLG------------NYRRALTDTEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~---------~~---~~~~~~~~~a~~~~~l~------------~~~~A~~~~~~al~ 99 (119)
|+..+..++.|+...|.. .. ....++..+|.+++-.+ +|++|+..+++++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~g~~~~~~~~~~~A~~~a~~vi~ 241 (514)
T 3nqp_A 167 MTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLN 241 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCTTSSCTTSSCCHHHHHHHHHHHHHHHHHCCBTTBCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCcccccHHHHHHHHHHHHHHhCCcccCCCccchHHHHHHHHHHHHHHh
No 335
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.26 E-value=1.3e+02 Score=20.96 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.2
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417 81 NLLLGNYRRALTDTEEALKLCPTNV 105 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
.++.++|..|...+++.|++.|...
T Consensus 208 a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 208 FFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 4578999999999999999988543
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.85 E-value=83 Score=20.79 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
-..+.-|..-|..+...| +|.+|...|..+|+.
T Consensus 147 ~~~AlfYe~wA~~lE~~g--~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 147 QESSIFYEEYANYFESRG--LFQKADEVYQKGKRM 179 (223)
T ss_dssp TTBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Confidence 345666778888888888 899999999999987
No 337
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=30.73 E-value=73 Score=17.73 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHH
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDC 55 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~ 55 (119)
+..+..-|..++..| |+..|+..
T Consensus 39 A~~Y~~Da~~fl~kG--D~v~Ala~ 61 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKG--DHITSFGC 61 (87)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHH
Confidence 334444444444444 44444443
No 338
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=29.48 E-value=77 Score=17.61 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHH
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCY 56 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~ 56 (119)
.+..+..-|..++..| |+..|+..+
T Consensus 34 mA~~Y~~Da~~fl~kG--D~v~Ala~i 58 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKG--DLVRAFECV 58 (86)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 3455555555555555 555555543
No 339
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=29.27 E-value=91 Score=18.35 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+.+......+...+..| .|+.|.-...++++.
T Consensus 13 ~~~A~~dL~~A~~~l~~g--~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHG--FYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHH
Confidence 345666777777888888 888888777777655
No 340
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.16 E-value=1.1e+02 Score=19.14 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417 67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT 103 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
....+.+|..-|..+...|++.+|-..|+.+++-+..
T Consensus 92 G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 92 GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5577889999999999999999999999999986643
No 341
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.43 E-value=1.6e+02 Score=21.01 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCc-ccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 033417 29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDS-ENSVLYANRAHVNL-LLGNYRRALTDTEEALK 99 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~-~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~ 99 (119)
-..+.+......+...+ ++..+-..|+++...... .+| ..+.+...-|..++ ..++|.+|..+|-++.+
T Consensus 137 ~llev~lle~~~~~~~~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 137 LLVEVQLLESKTYHALS--NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 44555667777788888 899999999998765211 123 23456667788888 89999999999998875
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.59 E-value=98 Score=22.29 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 71 SVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+++|..+|.|+.++|+..+|+.+..++.+
T Consensus 338 aEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 366 (461)
T 3kez_A 338 SEAYLNAAEAAVQTGDNAKAVKYLNSIVQ 366 (461)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 67889999999999999999988887654
No 343
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=27.52 E-value=13 Score=26.87 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|..+=+.| +|++|+.+|..+++.
T Consensus 11 A~~~~~~Av~~D~~g--~~~eA~~~Y~~a~~~ 40 (444)
T 2zan_A 11 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY 40 (444)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 444555566666666 899999998888876
No 344
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.11 E-value=53 Score=21.50 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 36 EKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+...++.+.| .|++|.+.+.+...-
T Consensus 122 qAV~VCiekg--~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENG--NFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHC--
T ss_pred HHHHHHHHcc--chHHHHHHHHHHhcC
Confidence 4455677877 899999999998877
No 345
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=25.62 E-value=1.3e+02 Score=19.01 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 033417 78 AHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~ 99 (119)
-.-++.+|+|++|..+..+...
T Consensus 39 I~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 39 IKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3445667777777777766443
No 346
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.59 E-value=1.8e+02 Score=20.99 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhc------ccCC---------CcccHHHHHHHHHHHHHhcC---------HHHHHHHHHHHH
Q 033417 49 YYDAIDCYTRAINQ------NVLS---------DSENSVLYANRAHVNLLLGN---------YRRALTDTEEAL 98 (119)
Q Consensus 49 ~~~A~~~~~~al~~------~~~~---------~~~~~~~~~~~a~~~~~l~~---------~~~A~~~~~~al 98 (119)
|+.-+..++.|+.. .|.. ......++..+|.+++-.+. |++|+..+++++
T Consensus 166 y~~I~~DL~~A~~~~~~~~~Lp~~~~~~~~~~gR~tk~aA~allarvyL~~~~~~~~~~~~~~~~a~~~a~~vi 239 (481)
T 3iv0_A 166 LQNCLADLQPLLDDDPGAEVLPWSYSSYSSKGIRASRGSVIALMMHINLWLVQFDAQNKEQYYRNVVSLGEELE 239 (481)
T ss_dssp HHHHHHHHHHHHHTCTTSCSSCSCCSSTTTTTTSCCHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccCCCccccCcccCCccCHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHH
Confidence 34556667777776 4431 23334667777888876553 899999999998
No 347
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.10 E-value=1.2e+02 Score=17.91 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+-.+.+.|...=..| +-+.|+.+|.++|..
T Consensus 21 ~AF~~Is~AL~~DE~g--~k~~Al~lYk~GI~e 51 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELG--QKEEAKNYYKQGIGH 51 (116)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcC--CHHHHHHHHHHHHHH
Confidence 3445555555555555 566666666665543
No 348
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.65 E-value=2.2e+02 Score=20.20 Aligned_cols=69 Identities=9% Similarity=-0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-Cccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417 30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DSEN-SVLYANRAHVNLLLGNYRRALTDTEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+.+......++..+ +|..+...+.++-.+.... +|.. ..+....|..++..++|.+|...|-.++..
T Consensus 167 kid~~l~~irl~l~~~--d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 167 KIDVMLTIARLGFFYN--DQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4555666666677777 8999999999986652221 2211 234445566777789999999999888764
No 349
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.05 E-value=1.2e+02 Score=20.21 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=25.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417 80 VNLLLGNYRRALTDTEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
+.++.|.|++|...+++...-+|.+.+....+.
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~ 155 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLL 155 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 446789999999999999887766665554443
No 350
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.83 E-value=1.4e+02 Score=21.51 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 70 NSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+++|..+|.|..++|+..+|+.+..++.+
T Consensus 363 ~AEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 392 (478)
T 3hdx_A 363 LEDITLLRAEALCALNRSTEAVSYLNMIRT 392 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 378899999999999999999988887654
No 351
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.40 E-value=1.5e+02 Score=17.69 Aligned_cols=62 Identities=8% Similarity=-0.018 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417 32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK 99 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+-+....+|..+ +.+..+..+...-+...+ .|+. ....+....--.+..+|...|++-.+
T Consensus 41 e~LeeASrlyf~~~--n~~~m~~~L~pLh~~l~~-~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 41 EGLEEASRLYFGER--NVKGMFEVLEPLHAMMER-GPQT---LKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc--CHHHHHHHHHHHHHHHcc-CCCC---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445556667887 899998888665332111 2322 22222332223445677777766543
Done!