BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033418
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190
PE=2 SV=1
Length = 124
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/124 (68%), Positives = 102/124 (82%), Gaps = 5/124 (4%)
Query: 1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
MRL+ HNMLS NIKGV N FPL IE EKV K+VDFNPDFL+ +F KI+W+ALV +RSM
Sbjct: 1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60
Query: 61 GYSELPEESPESSMLDSDD-FLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLH 115
Y+ELP+ +P+++ L+SD+ FL KFHH LHLEEG+LVCPETGRKF V+KGIPNMLLH
Sbjct: 61 EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120
Query: 116 EDEV 119
EDEV
Sbjct: 121 EDEV 124
>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270
PE=2 SV=1
Length = 124
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 105/124 (84%), Gaps = 5/124 (4%)
Query: 1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
MRL+THNMLS NIKGV +GFPL IE VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60
Query: 61 GYSELPEESPESSMLDSDDFLMK-----FHHLHLEEGALVCPETGRKFPVNKGIPNMLLH 115
GY+ELPEESP++++L SD+ +K LHLEEGALVCPETGRKFPVNKGIPNMLLH
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLH 120
Query: 116 EDEV 119
EDEV
Sbjct: 121 EDEV 124
>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2
SV=1
Length = 125
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
Query: 1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+LLTHN+LSS+++GV GFPL ++ +V V+FNP+F+ + PK+EW ALVQA+ +
Sbjct: 1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60
Query: 60 MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
+ +E+P+E E D + FL K HH+ LE EG L CPE+GR FP+++GIPNMLL+
Sbjct: 61 LNLAEVPKEPTEGYEHD-ETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLN 119
Query: 116 EDEV 119
++E
Sbjct: 120 DEET 123
>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2
SV=1
Length = 125
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 86/124 (69%), Gaps = 6/124 (4%)
Query: 1 MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
MRLLTHN+LSS+++GV GFPL ++ +V V+FNPDF+ + PK+EW AL++A+
Sbjct: 1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADH 60
Query: 60 MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
+ ++P+E P +++FL K HH+ LE EG L CPE+GR FP+++GIPNMLL
Sbjct: 61 LHLIQVPKE-PIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLS 119
Query: 116 EDEV 119
++E
Sbjct: 120 DEET 123
>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1
SV=1
Length = 125
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 6/124 (4%)
Query: 1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+LLTHN+LSS+++GV + GFPL ++ +V V+FNP+F+ + PK+EW A ++A+ +
Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60
Query: 60 MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
+ ++P+ P ++++FL HHL LE EG L CPE+GR FP+++GIPNMLL
Sbjct: 61 LRLIQVPK-GPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLS 119
Query: 116 EDEV 119
E+E
Sbjct: 120 EEET 123
>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1
Length = 124
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
Query: 1 MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+L T+N L+S IKGV GFPL + + K + +FNP F++ I PK++W A+ A++
Sbjct: 1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQV 60
Query: 60 MGYSE-LPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLL 114
+E +P PE ++++++ L K HHL E EG L CPETGR FP++ GIPNMLL
Sbjct: 61 AELTEDIPAVQPE-NIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLL 119
Query: 115 HEDEV 119
+EDEV
Sbjct: 120 NEDEV 124
>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm112 PE=3 SV=1
Length = 126
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 1 MRLLTHNMLSSNIKGVAN---GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
M+LLT N L+ + K + FPL + K+ +Q++ P+FL I P+I+W AL++ +
Sbjct: 1 MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60
Query: 58 RSMGYSELPEESPESSMLDSDDFLMK-FHHLHLE----EGALVCPETGRKFPVNKGIPNM 112
R +G LP+E P+ + DSD+ L+K H++ LE EG +VC G +P+ +GIPNM
Sbjct: 61 RQLGNYSLPDEKPD-LVDDSDEVLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEGIPNM 119
Query: 113 LLHEDEV 119
LL E E+
Sbjct: 120 LLSESEI 126
>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489
PE=3 SV=1
Length = 128
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 1 MRLLTHNMLSSNIK-GVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M++LTHNM++ K + GFPL +E + I + +FN +F KNI+PK++W + + S
Sbjct: 1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGIAEISIK 60
Query: 60 MGYSELPEESPESSMLDSDDFLMKFHHL----HLEEGALVCPETGRKFPVNKGIPNMLLH 115
+ + S L+ ++FL H+L + G+L CP R +P++KGIPNMLL
Sbjct: 61 FNIPIQLDTTKHS--LEDEEFLKTLHNLLCNLKVITGSLTCPNCQRVYPIDKGIPNMLLR 118
Query: 116 EDEV 119
EDE+
Sbjct: 119 EDEI 122
>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1
Length = 125
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 1 MRLLTHNMLSSN-IKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+L HN +SS +K V G+PL + V++ +EK ++F+ D + +I+++AL+ A+ +
Sbjct: 1 MKLFVHNFMSSRFLKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAA 60
Query: 60 MGYSE-LPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNML 113
+ S+ +P E PE +D+ L FHHL + +G L+CPET FP+ GIPNML
Sbjct: 61 VNQSDRIPREKPEKWDELTDEQLRVFHHLLMNIDVIDGELICPETKTVFPIRDGIPNML 119
>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=trm-112 PE=3 SV=1
Length = 127
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 1 MRLLTHNMLSS---NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
M+++T N L+ N K + FPL + ++ + ++ NP L N+ P+I+W AL S
Sbjct: 1 MKVMTLNFLTCAVKNCKSSNDSFPLHPKEAELAKDDIEINPQLLINVLPRIDWAALRTTS 60
Query: 58 RSMGYSELPEESPESSMLDSDDFLMK-FHHLHLE----EGALVCPETGRKFPVNKGIPNM 112
+G+ LPE+ P L SD+ L+K H L +E EG LVC G ++ V G+ N
Sbjct: 61 TELGFPTLPEQPPSPEDLQSDEALLKELHELLMETQMMEGKLVCGHCGHEYAVKNGVANF 120
Query: 113 LL 114
LL
Sbjct: 121 LL 122
>sp|P53738|TR112_YEAST Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM112 PE=1
SV=1
Length = 135
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 1 MRLLTHNMLSSNIKGV---ANGFPLLIEVEK---VIEKQVDFNPDFLKNIFPKIEWQALV 54
M+ LT N L ++K + FPL + K V ++ ++FNP+FL NI +++W A++
Sbjct: 1 MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60
Query: 55 QASRSMGYSELPEESPE--SSMLD-SDDFLMKFHHLH-------LEEGALVCPETGRKFP 104
+ +G + LP P SS+ + +DD + + LH + EG + C G +
Sbjct: 61 TVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYY 120
Query: 105 VNKGIPNMLL 114
+ GIPN+LL
Sbjct: 121 IKNGIPNLLL 130
>sp|B4S277|SYGB_ALTMD Glycine--tRNA ligase beta subunit OS=Alteromonas macleodii (strain
DSM 17117 / Deep ecotype) GN=glyS PE=3 SV=1
Length = 692
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 23 LIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFL 81
L + K + + D++ + L+ I +EW ++QA G+ E+P+E+ +M D ++
Sbjct: 229 LEDAAKNLSLKPDYDEELLEEIASLVEWPVVLQAGFDKGFLEVPKEALIYTMKDDQKYV 287
>sp|P18722|ZG46_XENLA Gastrula zinc finger protein XlCGF46.1 (Fragment) OS=Xenopus laevis
PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 LMKFHHL-HLEEGALVCPETGRKFPVNKGIPNMLL 114
L+K H L H EE VCPE G+ + +G+ N LL
Sbjct: 48 LLKSHQLIHTEETPFVCPECGQGYKSKQGLQNHLL 82
>sp|O17732|PYC1_CAEEL Pyruvate carboxylase 1 OS=Caenorhabditis elegans GN=pyc-1 PE=1 SV=1
Length = 1175
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 41 LKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETG 100
L+ + P I +Q L++ + +MGYS P D+ + KF L ++ G +
Sbjct: 626 LRKLIPNIPFQCLLRGANAMGYSNYP-----------DNVIYKFCELAVKNGM----DVF 670
Query: 101 RKFPVNKGIPNMLLHEDEV 119
R F +PN+L+ + V
Sbjct: 671 RVFDSLNYLPNLLVGMEAV 689
>sp|Q8JZL0|ZN467_MOUSE Zinc finger protein 467 OS=Mus musculus GN=Znf467 PE=1 SV=1
Length = 594
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 61 GYSELPEES---PESSMLDSDDFLMKFHH-LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
G++ +PE+ E D ++ H LH EG CP+ GR F +MLLH+
Sbjct: 151 GWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPDCGRSFTQRA---HMLLHQ 207
>sp|Q38X99|SYGB_LACSS Glycine--tRNA ligase beta subunit OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=glyS PE=3 SV=1
Length = 693
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 25 EVEKVIEK---QVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFL 81
++EK+ ++ QVD + + L+ + +EW Y E+PEE +SM D+ +
Sbjct: 225 QIEKMAQENDWQVDLDANLLEEVTNLVEWPTAFYGQFDAKYLEIPEEVLITSMKDNQRYF 284
>sp|Q5RJR4|ZN467_RAT Zinc finger protein 467 OS=Rattus norvegicus GN=Znf467 PE=2 SV=1
Length = 594
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 61 GYSELPEES---PESSMLDSDDFLMKFHH-LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
G++ +PE+ E D ++ H LH EG CP+ GR F +MLLH+
Sbjct: 151 GWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPDCGRSFTQRA---HMLLHQ 207
>sp|C5C430|FGD_BEUC1 F420-dependent glucose-6-phosphate dehydrogenase OS=Beutenbergia
cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
GN=fgd PE=3 SV=1
Length = 336
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 3 LLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS-RSMG 61
L T +L + +G A L +++ +IE +V ++PD + + W AL S +G
Sbjct: 198 LYTETLLPALAEGAAKSDRTLADLDLMIEMKVSYDPDHARALEATRNWGALALTSEEKVG 257
Query: 62 YSE----------LPEESPESSMLDSDD 79
+ LP E S + SDD
Sbjct: 258 VEDPVEMERLADALPTERTASRWIVSDD 285
>sp|Q7Z7K2|ZN467_HUMAN Zinc finger protein 467 OS=Homo sapiens GN=ZNF467 PE=2 SV=1
Length = 595
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 61 GYSELPEES---PESSMLDSDDFLMKFHH-LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
G+ +PE+ E D ++ H LH EG CP+ GR F +MLLH+
Sbjct: 151 GWGPMPEKPYGCGECERRFRDQLTLRLHQRLHRGEGPCACPDCGRSFTQRA---HMLLHQ 207
>sp|B6YS49|SYD_AZOPC Aspartate--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=aspS PE=3 SV=1
Length = 583
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 14 KGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESS 73
K + G +I++E + K+ + N D P + + +V R++ SE+P + E +
Sbjct: 61 KALELGREWVIQIEGKVVKRFNKNSDI-----PTGDIEIIVSRLRTLNPSEVPPFTIEEN 115
Query: 74 MLDSDDFLMKFHHLHL 89
DD MK+ +L L
Sbjct: 116 TDGGDDLRMKYRYLDL 131
>sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial OS=Mus musculus GN=Pc PE=1 SV=1
Length = 1178
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 41 LKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETG 100
L+ + P I +Q L++ + ++GY+ P D+ + KF + E G +
Sbjct: 630 LRELIPNIPFQMLLRGANAVGYTNYP-----------DNVVFKFCEVAKENGM----DVF 674
Query: 101 RKFPVNKGIPNMLL 114
R F +PNMLL
Sbjct: 675 RVFDSLNYLPNMLL 688
>sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial OS=Homo sapiens GN=PC PE=1 SV=2
Length = 1178
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 41 LKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETG 100
L+ + P I +Q L++ + ++GY+ P D+ + KF + E G +
Sbjct: 630 LRELIPNIPFQMLLRGANAVGYTNYP-----------DNVVFKFCEVAKENGM----DVF 674
Query: 101 RKFPVNKGIPNMLL 114
R F +PNMLL
Sbjct: 675 RVFDSLNYLPNMLL 688
>sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial OS=Rattus norvegicus GN=Pc PE=1
SV=2
Length = 1178
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 41 LKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETG 100
L+ + P I +Q L++ + ++GY+ P D+ + KF + E G +
Sbjct: 630 LRELIPNIPFQMLLRGANAVGYTNYP-----------DNVVFKFCEVAKENGM----DVF 674
Query: 101 RKFPVNKGIPNMLL 114
R F +PNMLL
Sbjct: 675 RIFDSLNYLPNMLL 688
>sp|Q6FW60|AIM18_CANGA Altered inheritance of mitochondria protein 18, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=AIM18 PE=3 SV=1
Length = 309
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Query: 2 RLLTHNMLSSNIKGVANGFPLLIEVEKVIE----KQVDFNPDFLKNIFPKIEWQALVQAS 57
R+L N+L SNI+ VA P+ K+++ K V +PD KN + +
Sbjct: 173 RILIDNLLDSNIRMVAKLTPIKNASAKLLKEGIIKNVQMHPDASKN-----------KET 221
Query: 58 RSMGYSELPEE-SPESSMLDSDDFLMKFHHLHLEEGAL 94
+MG E+ E + + DDFLM+ L +G+L
Sbjct: 222 LAMGIKEVEEAIKIKGPVPKDDDFLMEL----LADGSL 255
>sp|E4UYL6|DAPB_ARTGP Probable dipeptidyl-aminopeptidase B OS=Arthroderma gypseum (strain
ATCC MYA-4604 / CBS 118893) GN=DAPB PE=3 SV=1
Length = 917
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 46 PKIEWQALVQA-SRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETGRKFP 104
PKI WQ L+ + S + Y+E+ EE+ + L ++ L H+ + P R+ P
Sbjct: 602 PKIPWQKLMNSPSNTDSYTEILEENKRLAKLSNEFALPSLHYSSITVDGFKLPVVERRPP 661
>sp|Q5M8Z2|PREY_XENTR Protein preY, mitochondrial OS=Xenopus tropicalis GN=pyurf PE=2
SV=1
Length = 122
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 62 YSELPEESPESSMLDSDDF---LMKF-------HHLHLEEGA--LVCPETGRKFPVNKGI 109
+ L SPE S+ DS F L++F L EE L+ E G +P+ GI
Sbjct: 37 HCSLVARSPEQSLKDSKTFDPTLLQFLVCPLSRKSLRYEESTNELINDELGIAYPIVDGI 96
Query: 110 PNML 113
PNM+
Sbjct: 97 PNMI 100
>sp|C0M9J7|SYGB_STRE4 Glycine--tRNA ligase beta subunit OS=Streptococcus equi subsp. equi
(strain 4047) GN=glyS PE=3 SV=1
Length = 679
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 24 IEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLM 82
IE E+ + QVD + D L + +E+ S Y E+PEE +SM + + +
Sbjct: 229 IEAEQKV--QVDIDEDLLNEVLNLVEYPTAFMGSFDPKYLEIPEEVLVTSMKNHQRYFV 285
>sp|C0MDQ3|SYGB_STRS7 Glycine--tRNA ligase beta subunit OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=glyS PE=3 SV=1
Length = 679
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 24 IEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLM 82
IE E+ + QVD + D L + +E+ S Y E+PEE +SM + + +
Sbjct: 229 IEAEQKV--QVDIDEDLLNEVLNLVEYPTAFMGSFDPKYLEIPEEVLVTSMKNHQRYFV 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,732,410
Number of Sequences: 539616
Number of extensions: 1776193
Number of successful extensions: 5039
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5001
Number of HSP's gapped (non-prelim): 36
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)