BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033419
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 LLEAEGLYVCDASVFPSAVGVNPMITIQSTA 103
L E GLYV D S+ P VGVNP +TI + A
Sbjct: 464 LPEYPGLYVVDGSLVPGNVGVNPFVTITALA 494
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 499
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 499
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 499
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 499
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 461 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 497
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 499
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGVNP +TI + L++R E + +Q
Sbjct: 465 KNLYVTDGSLIPGSVGVNPFVTITA----LAERNVERIIKQ 501
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGV+P +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVDPFVTITA----LAERNVERIIKQ 499
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 77 EGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLREQ 117
+ LYV D S+ P +VGV P +TI + L++R E + +Q
Sbjct: 463 KNLYVTDGSLIPGSVGVLPFVTITA----LAERNVERIIKQ 499
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 78 GLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLR 115
GL V DASV P V VNP IT+ + +R A+ +R
Sbjct: 494 GLRVADASVMPEHVTVNPNITVM----MIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 78 GLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLR 115
GL V DASV P V VNP IT+ + +R A+ +R
Sbjct: 494 GLRVADASVMPEHVTVNPNITVM----MIGERCADLIR 527
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 78 GLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAESLR 115
GL V DASV P V VNP IT+ + +R A+ +R
Sbjct: 494 GLRVADASVMPEHVTVNPNITVM----MIGERCADLIR 527
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,476,238
Number of Sequences: 62578
Number of extensions: 66006
Number of successful extensions: 107
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 15
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)