Query 033419
Match_columns 119
No_of_seqs 134 out of 1372
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.5E-10 3.2E-15 83.3 4.6 63 3-71 8-70 (262)
2 PRK04176 ribulose-1,5-biphosph 99.0 6.5E-10 1.4E-14 81.7 5.6 63 1-69 1-63 (257)
3 KOG0029 Amine oxidase [Seconda 99.0 2.9E-09 6.3E-14 84.9 8.0 72 28-99 12-83 (501)
4 TIGR00292 thiazole biosynthesi 98.9 1.7E-09 3.6E-14 79.5 5.1 59 6-70 2-60 (254)
5 PF01946 Thi4: Thi4 family; PD 98.9 4.9E-10 1.1E-14 80.4 2.1 43 29-71 15-57 (230)
6 COG2081 Predicted flavoprotein 98.9 4.9E-09 1.1E-13 80.9 6.6 86 30-116 2-90 (408)
7 COG1233 Phytoene dehydrogenase 98.8 7.9E-09 1.7E-13 82.0 6.5 44 30-73 2-45 (487)
8 PF13450 NAD_binding_8: NAD(P) 98.8 1E-08 2.2E-13 61.0 5.4 38 36-73 1-38 (68)
9 COG0562 Glf UDP-galactopyranos 98.8 9.1E-09 2E-13 77.6 6.2 54 31-84 1-64 (374)
10 COG0644 FixC Dehydrogenases (f 98.8 6.3E-09 1.4E-13 80.4 5.2 41 30-70 2-42 (396)
11 TIGR01377 soxA_mon sarcosine o 98.7 6.5E-08 1.4E-12 73.5 8.8 35 32-66 1-35 (380)
12 PLN02268 probable polyamine ox 98.7 3.3E-08 7.3E-13 76.8 7.3 42 32-73 1-42 (435)
13 TIGR01373 soxB sarcosine oxida 98.7 1E-07 2.3E-12 73.4 10.0 45 21-65 20-66 (407)
14 PRK07208 hypothetical protein; 98.7 2.5E-08 5.5E-13 78.3 6.6 45 28-72 1-45 (479)
15 PRK10157 putative oxidoreducta 98.7 1.8E-08 3.9E-13 78.7 5.5 39 30-68 4-42 (428)
16 PRK10015 oxidoreductase; Provi 98.7 1.7E-08 3.7E-13 79.0 5.3 40 29-68 3-42 (429)
17 PF03486 HI0933_like: HI0933-l 98.7 3.5E-08 7.5E-13 77.0 6.9 37 32-68 1-37 (409)
18 PRK05249 soluble pyridine nucl 98.7 3.1E-08 6.8E-13 77.6 5.7 44 28-71 2-45 (461)
19 TIGR03364 HpnW_proposed FAD de 98.7 1.3E-07 2.8E-12 71.8 8.6 34 32-65 1-34 (365)
20 PRK11259 solA N-methyltryptoph 98.7 1.5E-07 3.2E-12 71.5 8.9 38 30-67 2-39 (376)
21 PLN02576 protoporphyrinogen ox 98.7 5.6E-08 1.2E-12 76.7 6.7 46 29-74 10-56 (496)
22 TIGR02730 carot_isom carotene 98.6 6.2E-08 1.3E-12 76.8 6.3 42 32-73 1-42 (493)
23 PLN00093 geranylgeranyl diphos 98.6 4.9E-08 1.1E-12 76.9 5.7 38 27-64 35-72 (450)
24 PLN02463 lycopene beta cyclase 98.6 2.8E-08 6.1E-13 78.3 4.2 55 11-65 8-62 (447)
25 PRK11883 protoporphyrinogen ox 98.6 5.9E-08 1.3E-12 75.2 5.9 41 33-73 2-44 (451)
26 PRK07233 hypothetical protein; 98.6 5.5E-08 1.2E-12 74.9 5.7 40 33-72 1-40 (434)
27 PF01266 DAO: FAD dependent ox 98.6 1.3E-07 2.8E-12 70.3 7.4 75 33-114 1-75 (358)
28 TIGR00562 proto_IX_ox protopor 98.6 7.7E-08 1.7E-12 75.1 6.1 43 32-74 3-49 (462)
29 PF01494 FAD_binding_3: FAD bi 98.6 5.5E-08 1.2E-12 72.3 4.9 37 31-67 1-37 (356)
30 PRK06370 mercuric reductase; V 98.6 9.2E-08 2E-12 75.2 5.9 43 27-70 1-43 (463)
31 PRK07494 2-octaprenyl-6-methox 98.6 7.3E-08 1.6E-12 73.7 5.2 40 27-66 3-42 (388)
32 TIGR02733 desat_CrtD C-3',4' d 98.6 1E-07 2.2E-12 75.4 6.1 40 32-71 2-41 (492)
33 PRK12266 glpD glycerol-3-phosp 98.6 8.4E-08 1.8E-12 76.5 5.6 41 28-68 3-43 (508)
34 TIGR02734 crtI_fam phytoene de 98.6 9.1E-08 2E-12 75.7 5.7 40 34-73 1-40 (502)
35 PRK06115 dihydrolipoamide dehy 98.6 8.7E-08 1.9E-12 75.6 5.6 40 31-70 3-42 (466)
36 PRK06467 dihydrolipoamide dehy 98.6 8.8E-08 1.9E-12 75.7 5.6 43 29-71 2-44 (471)
37 PRK13369 glycerol-3-phosphate 98.6 9.1E-08 2E-12 76.1 5.6 40 28-67 3-42 (502)
38 PLN02568 polyamine oxidase 98.6 2.6E-07 5.7E-12 74.4 8.2 47 27-73 1-52 (539)
39 PRK06116 glutathione reductase 98.6 7.3E-08 1.6E-12 75.4 5.0 41 29-70 2-42 (450)
40 COG0665 DadA Glycine/D-amino a 98.6 3E-07 6.6E-12 69.9 8.2 39 29-67 2-40 (387)
41 PLN02661 Putative thiazole syn 98.6 7.9E-08 1.7E-12 73.7 5.0 42 29-70 90-132 (357)
42 PRK07045 putative monooxygenas 98.6 8.3E-08 1.8E-12 73.5 5.0 39 28-66 2-40 (388)
43 PRK11728 hydroxyglutarate oxid 98.6 2.9E-07 6.3E-12 70.8 7.9 38 31-68 2-41 (393)
44 PRK05976 dihydrolipoamide dehy 98.6 1.4E-07 3E-12 74.4 5.9 43 29-72 2-44 (472)
45 PRK08773 2-octaprenyl-3-methyl 98.6 9.7E-08 2.1E-12 73.2 4.9 37 29-65 4-40 (392)
46 TIGR02032 GG-red-SF geranylger 98.6 1.2E-07 2.6E-12 69.2 5.1 36 32-67 1-36 (295)
47 PTZ00363 rab-GDP dissociation 98.5 9.5E-08 2.1E-12 75.3 4.7 46 28-73 1-46 (443)
48 PRK07364 2-octaprenyl-6-methox 98.5 1.5E-07 3.2E-12 72.5 5.6 39 28-66 15-53 (415)
49 PRK08010 pyridine nucleotide-d 98.5 1.5E-07 3.2E-12 73.6 5.6 42 30-71 2-44 (441)
50 TIGR00031 UDP-GALP_mutase UDP- 98.5 2.4E-07 5.2E-12 71.7 6.7 42 32-73 2-43 (377)
51 TIGR01350 lipoamide_DH dihydro 98.5 1.8E-07 3.9E-12 73.3 5.8 40 31-71 1-40 (461)
52 PRK09126 hypothetical protein; 98.5 1.3E-07 2.8E-12 72.3 4.9 35 31-65 3-37 (392)
53 TIGR02023 BchP-ChlP geranylger 98.5 1.3E-07 2.8E-12 72.7 4.8 32 32-63 1-32 (388)
54 TIGR01421 gluta_reduc_1 glutat 98.5 1.8E-07 3.9E-12 73.6 5.7 41 30-71 1-41 (450)
55 PRK08020 ubiF 2-octaprenyl-3-m 98.5 1.2E-07 2.6E-12 72.6 4.6 37 28-64 2-38 (391)
56 PRK08163 salicylate hydroxylas 98.5 1.8E-07 3.9E-12 71.6 5.5 39 29-67 2-40 (396)
57 PRK06185 hypothetical protein; 98.5 1.7E-07 3.6E-12 72.1 5.1 38 28-65 3-40 (407)
58 TIGR01424 gluta_reduc_2 glutat 98.5 2E-07 4.4E-12 73.0 5.6 40 31-71 2-41 (446)
59 PRK06416 dihydrolipoamide dehy 98.5 2.2E-07 4.7E-12 73.0 5.7 41 30-71 3-43 (462)
60 PRK07251 pyridine nucleotide-d 98.5 2.3E-07 4.9E-12 72.5 5.7 41 30-70 2-43 (438)
61 PRK07121 hypothetical protein; 98.5 2.8E-07 6E-12 73.1 6.1 43 28-70 17-59 (492)
62 PF12831 FAD_oxidored: FAD dep 98.5 1.6E-07 3.4E-12 73.5 4.7 39 33-71 1-39 (428)
63 PRK08013 oxidoreductase; Provi 98.5 1.8E-07 3.9E-12 72.2 4.9 35 31-65 3-37 (400)
64 PLN02172 flavin-containing mon 98.5 2.7E-07 5.9E-12 73.0 6.0 43 29-71 8-50 (461)
65 PRK05714 2-octaprenyl-3-methyl 98.5 1.5E-07 3.4E-12 72.4 4.4 34 31-64 2-35 (405)
66 PRK06481 fumarate reductase fl 98.5 3.5E-07 7.5E-12 73.0 6.4 43 28-70 58-100 (506)
67 PRK07608 ubiquinone biosynthes 98.5 2.4E-07 5.3E-12 70.7 5.1 37 30-66 4-40 (388)
68 COG2072 TrkA Predicted flavopr 98.5 4.4E-07 9.6E-12 71.4 6.7 45 27-71 4-49 (443)
69 PRK08849 2-octaprenyl-3-methyl 98.5 2.4E-07 5.2E-12 71.1 5.0 34 31-64 3-36 (384)
70 PRK14694 putative mercuric red 98.5 3.3E-07 7.2E-12 72.2 5.9 43 28-71 3-45 (468)
71 PRK08274 tricarballylate dehyd 98.5 3.1E-07 6.7E-12 72.2 5.5 41 29-69 2-44 (466)
72 PRK07818 dihydrolipoamide dehy 98.5 3.9E-07 8.6E-12 71.7 6.0 41 30-71 3-43 (466)
73 TIGR03329 Phn_aa_oxid putative 98.4 6.3E-07 1.4E-11 70.5 7.0 37 29-65 22-60 (460)
74 COG3380 Predicted NAD/FAD-depe 98.4 4E-07 8.6E-12 67.6 5.5 38 32-69 2-39 (331)
75 PRK06847 hypothetical protein; 98.4 3.2E-07 7E-12 69.7 5.3 38 29-66 2-39 (375)
76 PRK13748 putative mercuric red 98.4 8.4E-07 1.8E-11 71.2 7.8 41 30-71 97-137 (561)
77 PRK11101 glpA sn-glycerol-3-ph 98.4 3.5E-07 7.5E-12 73.6 5.6 38 29-66 4-41 (546)
78 COG3349 Uncharacterized conser 98.4 3.6E-07 7.8E-12 72.4 5.4 41 33-73 2-42 (485)
79 PLN02985 squalene monooxygenas 98.4 4.7E-07 1E-11 72.5 6.2 38 27-64 39-76 (514)
80 TIGR02028 ChlP geranylgeranyl 98.4 3.2E-07 6.9E-12 71.1 5.1 35 32-66 1-35 (398)
81 TIGR02731 phytoene_desat phyto 98.4 5.6E-07 1.2E-11 70.4 6.4 40 33-72 1-40 (453)
82 PRK06126 hypothetical protein; 98.4 4.1E-07 9E-12 72.8 5.8 39 27-65 3-41 (545)
83 PLN02697 lycopene epsilon cycl 98.4 4.1E-07 8.9E-12 73.1 5.8 50 16-66 94-143 (529)
84 PRK08850 2-octaprenyl-6-methox 98.4 2.9E-07 6.3E-12 71.0 4.7 34 30-63 3-36 (405)
85 PRK06292 dihydrolipoamide dehy 98.4 3.7E-07 7.9E-12 71.6 5.3 40 30-70 2-41 (460)
86 TIGR01988 Ubi-OHases Ubiquinon 98.4 3.1E-07 6.7E-12 69.7 4.7 34 33-66 1-34 (385)
87 PF00890 FAD_binding_2: FAD bi 98.4 4E-07 8.6E-12 70.3 5.3 37 33-69 1-37 (417)
88 PRK01747 mnmC bifunctional tRN 98.4 2.9E-06 6.3E-11 69.6 10.5 36 32-67 261-296 (662)
89 PRK12409 D-amino acid dehydrog 98.4 4.5E-07 9.7E-12 70.0 5.5 36 32-67 2-37 (410)
90 PRK12416 protoporphyrinogen ox 98.4 4.7E-07 1E-11 71.0 5.6 42 33-74 3-50 (463)
91 PRK12831 putative oxidoreducta 98.4 7.2E-07 1.6E-11 70.5 6.7 41 29-69 138-178 (464)
92 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 3.7E-07 8E-12 70.4 4.9 35 31-65 2-36 (390)
93 PRK06184 hypothetical protein; 98.4 4E-07 8.7E-12 72.2 5.2 37 30-66 2-38 (502)
94 TIGR03143 AhpF_homolog putativ 98.4 4.5E-07 9.7E-12 73.1 5.4 40 29-69 2-41 (555)
95 TIGR01790 carotene-cycl lycope 98.4 4.1E-07 8.8E-12 69.6 4.9 36 33-68 1-36 (388)
96 PRK07190 hypothetical protein; 98.4 4.3E-07 9.3E-12 72.2 5.2 38 29-66 3-40 (487)
97 PTZ00383 malate:quinone oxidor 98.4 1.6E-06 3.4E-11 69.4 8.3 39 29-67 43-83 (497)
98 TIGR02053 MerA mercuric reduct 98.4 5.1E-07 1.1E-11 70.9 5.5 38 32-70 1-38 (463)
99 COG0492 TrxB Thioredoxin reduc 98.4 1.4E-06 3E-11 65.7 7.5 38 30-68 2-40 (305)
100 PRK08244 hypothetical protein; 98.4 4.7E-07 1E-11 71.7 5.2 36 31-66 2-37 (493)
101 TIGR01292 TRX_reduct thioredox 98.4 5.7E-07 1.2E-11 65.9 5.2 37 32-69 1-37 (300)
102 PLN02464 glycerol-3-phosphate 98.4 5.4E-07 1.2E-11 73.7 5.5 40 29-68 69-108 (627)
103 PRK12837 3-ketosteroid-delta-1 98.4 5.7E-07 1.2E-11 71.9 5.4 42 28-70 4-45 (513)
104 PF13738 Pyr_redox_3: Pyridine 98.4 4.5E-07 9.9E-12 63.2 4.3 38 35-72 1-39 (203)
105 PLN02529 lysine-specific histo 98.4 2E-06 4.3E-11 71.5 8.6 46 29-74 158-203 (738)
106 PRK05732 2-octaprenyl-6-methox 98.4 4.9E-07 1.1E-11 69.1 4.6 34 30-63 2-38 (395)
107 PRK06753 hypothetical protein; 98.4 5.5E-07 1.2E-11 68.5 4.8 35 33-67 2-36 (373)
108 PLN02676 polyamine oxidase 98.4 2E-06 4.3E-11 68.5 8.0 43 30-72 25-68 (487)
109 PF00732 GMC_oxred_N: GMC oxid 98.4 4.6E-07 9.9E-12 66.9 4.1 36 32-67 1-37 (296)
110 TIGR01984 UbiH 2-polyprenyl-6- 98.4 5.6E-07 1.2E-11 68.5 4.6 34 33-66 1-35 (382)
111 COG0654 UbiH 2-polyprenyl-6-me 98.4 5.9E-07 1.3E-11 69.2 4.7 33 31-63 2-34 (387)
112 PRK07236 hypothetical protein; 98.4 7.1E-07 1.5E-11 68.5 5.1 36 30-65 5-40 (386)
113 PRK08243 4-hydroxybenzoate 3-m 98.3 6.7E-07 1.4E-11 68.8 4.9 35 31-65 2-36 (392)
114 PRK12834 putative FAD-binding 98.3 8.4E-07 1.8E-11 71.4 5.6 42 29-70 2-45 (549)
115 PRK06327 dihydrolipoamide dehy 98.3 7.7E-07 1.7E-11 70.3 5.3 34 29-62 2-35 (475)
116 PRK02106 choline dehydrogenase 98.3 6.5E-07 1.4E-11 72.1 4.9 39 27-65 1-40 (560)
117 PTZ00058 glutathione reductase 98.3 1.2E-06 2.6E-11 70.9 6.4 42 29-71 46-87 (561)
118 PRK11445 putative oxidoreducta 98.3 9.1E-07 2E-11 67.3 5.3 34 32-66 2-35 (351)
119 PRK12842 putative succinate de 98.3 9E-07 2E-11 71.6 5.5 42 29-70 7-48 (574)
120 KOG0685 Flavin-containing amin 98.3 2.4E-06 5.2E-11 67.4 7.6 70 30-100 20-90 (498)
121 PRK07538 hypothetical protein; 98.3 9.4E-07 2E-11 68.4 5.3 35 33-67 2-36 (413)
122 TIGR01813 flavo_cyto_c flavocy 98.3 9.3E-07 2E-11 69.0 5.2 37 33-69 1-38 (439)
123 PRK14727 putative mercuric red 98.3 1.3E-06 2.8E-11 69.2 6.0 44 29-72 14-57 (479)
124 PTZ00052 thioredoxin reductase 98.3 1.1E-06 2.4E-11 70.1 5.6 34 29-62 3-36 (499)
125 TIGR03315 Se_ygfK putative sel 98.3 1.4E-06 3E-11 74.5 6.4 40 30-69 536-575 (1012)
126 COG1249 Lpd Pyruvate/2-oxoglut 98.3 1.3E-06 2.9E-11 69.0 6.0 45 29-73 2-46 (454)
127 PRK07333 2-octaprenyl-6-methox 98.3 7.9E-07 1.7E-11 68.2 4.5 35 31-65 1-37 (403)
128 PRK06834 hypothetical protein; 98.3 9.8E-07 2.1E-11 70.2 5.1 36 30-65 2-37 (488)
129 TIGR01989 COQ6 Ubiquinone bios 98.3 7.9E-07 1.7E-11 69.5 4.5 32 32-63 1-36 (437)
130 PRK07804 L-aspartate oxidase; 98.3 1.5E-06 3.3E-11 69.9 6.1 43 27-69 12-54 (541)
131 PRK07843 3-ketosteroid-delta-1 98.3 1.2E-06 2.6E-11 70.7 5.6 43 27-69 3-45 (557)
132 PRK12835 3-ketosteroid-delta-1 98.3 1.4E-06 3E-11 70.8 5.9 43 27-69 7-49 (584)
133 PRK06617 2-octaprenyl-6-methox 98.3 8.8E-07 1.9E-11 67.8 4.4 32 32-63 2-33 (374)
134 PRK12769 putative oxidoreducta 98.3 2.4E-06 5.1E-11 70.2 7.1 40 30-69 326-365 (654)
135 PLN02507 glutathione reductase 98.3 1.4E-06 3E-11 69.5 5.5 34 29-62 23-56 (499)
136 COG1232 HemY Protoporphyrinoge 98.3 2.6E-06 5.6E-11 67.2 6.9 41 33-73 2-44 (444)
137 PRK12779 putative bifunctional 98.3 2.1E-06 4.6E-11 73.1 6.8 40 30-69 305-344 (944)
138 COG1231 Monoamine oxidase [Ami 98.3 2.1E-06 4.6E-11 67.3 6.2 47 29-75 5-51 (450)
139 PRK08132 FAD-dependent oxidore 98.3 1.6E-06 3.4E-11 69.6 5.7 37 30-66 22-58 (547)
140 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.5E-06 3.3E-11 69.6 5.5 39 29-67 8-46 (538)
141 TIGR01320 mal_quin_oxido malat 98.3 5.6E-06 1.2E-10 65.9 8.7 36 32-67 1-38 (483)
142 PRK12845 3-ketosteroid-delta-1 98.3 1.9E-06 4E-11 69.8 6.0 45 25-70 10-54 (564)
143 TIGR01789 lycopene_cycl lycope 98.3 1.6E-06 3.5E-11 66.7 5.4 37 33-69 1-39 (370)
144 PRK12810 gltD glutamate syntha 98.3 2.6E-06 5.5E-11 67.4 6.4 40 30-69 142-181 (471)
145 PRK07588 hypothetical protein; 98.3 2E-06 4.3E-11 66.0 5.6 34 33-66 2-35 (391)
146 PRK05192 tRNA uridine 5-carbox 98.3 1.3E-06 2.8E-11 71.2 4.8 39 29-67 2-41 (618)
147 PLN02612 phytoene desaturase 98.3 4E-06 8.7E-11 67.9 7.6 43 29-71 91-133 (567)
148 PRK12844 3-ketosteroid-delta-1 98.3 1.7E-06 3.8E-11 69.8 5.5 41 29-69 4-44 (557)
149 PRK07057 sdhA succinate dehydr 98.2 2E-06 4.3E-11 69.9 5.8 43 27-69 8-50 (591)
150 PRK06452 sdhA succinate dehydr 98.2 1.8E-06 3.8E-11 69.9 5.5 41 29-69 3-43 (566)
151 PRK05868 hypothetical protein; 98.2 1.9E-06 4.1E-11 66.1 5.3 35 33-67 3-37 (372)
152 PF05834 Lycopene_cycl: Lycope 98.2 1.6E-06 3.4E-11 66.7 4.9 34 33-66 1-36 (374)
153 PRK12839 hypothetical protein; 98.2 2E-06 4.3E-11 69.7 5.7 44 27-70 4-47 (572)
154 PRK06475 salicylate hydroxylas 98.2 2E-06 4.4E-11 66.3 5.5 35 32-66 3-37 (400)
155 PRK06069 sdhA succinate dehydr 98.2 2.1E-06 4.6E-11 69.5 5.7 43 27-69 1-46 (577)
156 TIGR02732 zeta_caro_desat caro 98.2 2.9E-06 6.3E-11 67.2 6.4 40 33-72 1-40 (474)
157 TIGR01423 trypano_reduc trypan 98.2 2.2E-06 4.7E-11 68.3 5.5 42 30-71 2-52 (486)
158 PLN02815 L-aspartate oxidase 98.2 2E-06 4.3E-11 70.0 5.3 42 27-69 25-66 (594)
159 PLN02328 lysine-specific histo 98.2 4.9E-06 1.1E-10 69.8 7.5 43 30-72 237-279 (808)
160 PRK00711 D-amino acid dehydrog 98.2 2.1E-06 4.6E-11 66.1 5.1 35 33-67 2-36 (416)
161 PLN02927 antheraxanthin epoxid 98.2 2.9E-06 6.3E-11 69.9 6.1 37 28-64 78-114 (668)
162 PTZ00139 Succinate dehydrogena 98.2 2.3E-06 5E-11 69.9 5.4 41 29-69 27-67 (617)
163 PRK10262 thioredoxin reductase 98.2 2.5E-06 5.5E-11 63.9 5.2 40 29-69 4-43 (321)
164 PRK07803 sdhA succinate dehydr 98.2 2.8E-06 6E-11 69.6 5.8 41 29-69 6-46 (626)
165 PRK06996 hypothetical protein; 98.2 1.8E-06 4E-11 66.5 4.6 38 27-64 7-48 (398)
166 PRK15317 alkyl hydroperoxide r 98.2 6.4E-06 1.4E-10 65.9 7.7 40 29-70 209-248 (517)
167 COG0579 Predicted dehydrogenas 98.2 1E-05 2.2E-10 63.6 8.5 42 30-71 2-45 (429)
168 TIGR03219 salicylate_mono sali 98.2 3E-06 6.6E-11 65.5 5.3 35 33-67 2-37 (414)
169 PRK12775 putative trifunctiona 98.2 4.7E-06 1E-10 71.5 6.8 40 30-69 429-468 (1006)
170 TIGR01372 soxA sarcosine oxida 98.2 2.9E-06 6.3E-11 72.5 5.6 41 30-70 162-202 (985)
171 PRK09078 sdhA succinate dehydr 98.2 2.9E-06 6.2E-11 69.1 5.3 41 29-69 10-50 (598)
172 PTZ00367 squalene epoxidase; P 98.2 2.4E-06 5.2E-11 69.2 4.8 36 29-64 31-66 (567)
173 PLN03000 amine oxidase 98.2 8E-06 1.7E-10 68.9 7.9 45 30-74 183-227 (881)
174 PRK07395 L-aspartate oxidase; 98.2 3E-06 6.4E-11 68.5 5.2 42 27-69 5-46 (553)
175 PRK05257 malate:quinone oxidor 98.2 2.5E-06 5.5E-11 68.1 4.7 39 29-67 3-43 (494)
176 PRK08294 phenol 2-monooxygenas 98.2 2.8E-06 6.1E-11 69.6 5.1 38 28-65 29-67 (634)
177 PLN00128 Succinate dehydrogena 98.2 3.5E-06 7.6E-11 69.1 5.6 40 30-69 49-88 (635)
178 PRK08626 fumarate reductase fl 98.2 3.1E-06 6.7E-11 69.7 5.3 41 28-68 2-42 (657)
179 PRK08641 sdhA succinate dehydr 98.2 3.2E-06 6.9E-11 68.8 5.3 39 31-69 3-41 (589)
180 PRK11749 dihydropyrimidine deh 98.2 5.1E-06 1.1E-10 65.4 6.3 41 29-69 138-178 (457)
181 PRK07573 sdhA succinate dehydr 98.2 3.6E-06 7.8E-11 69.1 5.6 39 29-67 33-71 (640)
182 PRK06175 L-aspartate oxidase; 98.2 3.1E-06 6.7E-11 66.4 4.9 39 30-69 3-41 (433)
183 KOG1399 Flavin-containing mono 98.2 3.4E-06 7.3E-11 66.7 5.1 42 29-70 4-45 (448)
184 PRK06134 putative FAD-binding 98.2 4.6E-06 1E-10 67.7 6.0 43 27-69 8-50 (581)
185 COG0578 GlpA Glycerol-3-phosph 98.2 3.8E-06 8.2E-11 67.5 5.4 41 29-69 10-50 (532)
186 PLN02546 glutathione reductase 98.1 3.8E-06 8.3E-11 68.0 5.4 33 30-62 78-110 (558)
187 PRK13977 myosin-cross-reactive 98.1 6.9E-06 1.5E-10 66.6 6.8 42 30-71 21-66 (576)
188 PRK12843 putative FAD-binding 98.1 5.2E-06 1.1E-10 67.3 6.1 44 27-70 12-55 (578)
189 TIGR01316 gltA glutamate synth 98.1 9.5E-06 2.1E-10 63.9 7.2 41 29-69 131-171 (449)
190 PTZ00153 lipoamide dehydrogena 98.1 5.1E-06 1.1E-10 68.4 5.9 41 31-71 116-157 (659)
191 PRK12809 putative oxidoreducta 98.1 7.5E-06 1.6E-10 67.1 6.8 60 6-68 288-347 (639)
192 TIGR01812 sdhA_frdA_Gneg succi 98.1 4.2E-06 9.2E-11 67.5 5.3 37 33-69 1-37 (566)
193 COG1148 HdrA Heterodisulfide r 98.1 3.6E-06 7.8E-11 66.9 4.7 41 30-70 123-163 (622)
194 PRK08958 sdhA succinate dehydr 98.1 4.7E-06 1E-10 67.7 5.3 40 30-69 6-45 (588)
195 PRK05335 tRNA (uracil-5-)-meth 98.1 5.1E-06 1.1E-10 65.3 5.1 35 32-66 3-37 (436)
196 TIGR01318 gltD_gamma_fam gluta 98.1 1.3E-05 2.8E-10 63.5 7.4 39 30-68 140-178 (467)
197 PLN02852 ferredoxin-NADP+ redu 98.1 6.7E-06 1.4E-10 65.7 5.7 40 30-69 25-66 (491)
198 PRK09853 putative selenate red 98.1 5E-06 1.1E-10 71.1 5.3 40 30-69 538-577 (1019)
199 PF07992 Pyr_redox_2: Pyridine 98.1 5E-06 1.1E-10 57.7 4.5 33 33-65 1-33 (201)
200 PLN02487 zeta-carotene desatur 98.1 1.7E-05 3.6E-10 64.5 7.8 42 30-71 74-115 (569)
201 PTZ00306 NADH-dependent fumara 98.1 8.6E-06 1.9E-10 70.8 6.5 42 29-70 407-448 (1167)
202 PRK12778 putative bifunctional 98.1 5.9E-06 1.3E-10 68.8 5.2 40 30-69 430-469 (752)
203 PRK08205 sdhA succinate dehydr 98.1 6.8E-06 1.5E-10 66.7 5.3 40 28-68 2-41 (583)
204 PRK05945 sdhA succinate dehydr 98.1 6E-06 1.3E-10 66.9 4.9 40 30-69 2-43 (575)
205 TIGR00551 nadB L-aspartate oxi 98.1 7E-06 1.5E-10 65.2 5.2 38 31-69 2-39 (488)
206 TIGR01438 TGR thioredoxin and 98.1 8.3E-06 1.8E-10 64.9 5.6 33 31-63 2-34 (484)
207 PRK13339 malate:quinone oxidor 98.1 2.7E-05 5.9E-10 62.3 8.4 39 29-67 4-44 (497)
208 KOG2614 Kynurenine 3-monooxyge 98.0 8.4E-06 1.8E-10 63.4 5.1 39 31-69 2-40 (420)
209 KOG2820 FAD-dependent oxidored 98.0 1.1E-05 2.4E-10 61.6 5.6 38 28-65 4-41 (399)
210 PF00743 FMO-like: Flavin-bind 98.0 6.9E-06 1.5E-10 66.2 4.8 39 33-71 3-41 (531)
211 TIGR03140 AhpF alkyl hydropero 98.0 8.4E-06 1.8E-10 65.2 5.2 40 29-70 210-249 (515)
212 TIGR00275 flavoprotein, HI0933 98.0 1.3E-05 2.8E-10 62.2 6.1 35 35-69 1-35 (400)
213 TIGR02462 pyranose_ox pyranose 98.0 8.9E-06 1.9E-10 65.7 5.1 37 32-68 1-37 (544)
214 PRK06854 adenylylsulfate reduc 98.0 8.8E-06 1.9E-10 66.4 5.0 38 30-67 10-49 (608)
215 PRK08275 putative oxidoreducta 98.0 9.8E-06 2.1E-10 65.4 5.2 37 30-66 8-46 (554)
216 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 9.9E-06 2.1E-10 63.8 5.0 36 32-67 1-36 (433)
217 PRK09231 fumarate reductase fl 98.0 9.7E-06 2.1E-10 65.9 5.0 41 29-69 2-44 (582)
218 COG2303 BetA Choline dehydroge 98.0 8.4E-06 1.8E-10 65.8 4.4 37 28-64 4-40 (542)
219 PRK08401 L-aspartate oxidase; 98.0 1.2E-05 2.7E-10 63.5 5.1 34 32-65 2-35 (466)
220 PRK09077 L-aspartate oxidase; 98.0 1.3E-05 2.9E-10 64.4 5.3 40 29-69 6-45 (536)
221 PRK12814 putative NADPH-depend 98.0 1.3E-05 2.8E-10 65.9 5.3 40 30-69 192-231 (652)
222 TIGR01176 fum_red_Fp fumarate 98.0 1.2E-05 2.7E-10 65.3 5.0 40 30-69 2-43 (580)
223 PRK08071 L-aspartate oxidase; 97.9 1.3E-05 2.8E-10 64.1 5.0 38 31-69 3-40 (510)
224 COG1053 SdhA Succinate dehydro 97.9 1.5E-05 3.3E-10 64.6 5.4 43 27-69 2-44 (562)
225 KOG1298 Squalene monooxygenase 97.9 1.1E-05 2.4E-10 62.6 4.4 37 27-63 41-77 (509)
226 PRK06263 sdhA succinate dehydr 97.9 1.4E-05 3E-10 64.3 5.1 36 29-65 5-40 (543)
227 PRK12771 putative glutamate sy 97.9 3.5E-05 7.7E-10 62.2 7.4 40 30-69 136-175 (564)
228 PRK05329 anaerobic glycerol-3- 97.9 1.5E-05 3.3E-10 62.6 5.0 34 31-64 2-35 (422)
229 COG3573 Predicted oxidoreducta 97.9 2.8E-05 6.2E-10 59.8 6.0 46 29-74 3-50 (552)
230 TIGR01317 GOGAT_sm_gam glutama 97.9 3.5E-05 7.5E-10 61.4 6.8 38 31-68 143-180 (485)
231 PLN02976 amine oxidase 97.9 3.2E-05 6.8E-10 68.3 6.7 43 31-73 693-735 (1713)
232 KOG2415 Electron transfer flav 97.9 1.5E-05 3.2E-10 62.7 4.2 41 30-70 75-121 (621)
233 COG3075 GlpB Anaerobic glycero 97.9 2E-05 4.3E-10 60.2 4.6 35 30-64 1-35 (421)
234 PRK06912 acoL dihydrolipoamide 97.9 2.2E-05 4.8E-10 61.8 5.0 37 33-70 2-38 (458)
235 PF01134 GIDA: Glucose inhibit 97.9 1.8E-05 3.9E-10 61.6 4.3 35 33-67 1-36 (392)
236 PF00070 Pyr_redox: Pyridine n 97.9 4.2E-05 9.1E-10 46.3 5.0 35 33-67 1-35 (80)
237 COG0493 GltD NADPH-dependent g 97.9 3.5E-05 7.5E-10 61.1 5.9 37 32-68 124-160 (457)
238 PRK06567 putative bifunctional 97.9 2.4E-05 5.3E-10 66.8 5.3 38 30-67 382-419 (1028)
239 TIGR01810 betA choline dehydro 97.8 1.8E-05 3.9E-10 63.5 4.1 33 33-65 1-34 (532)
240 PRK13800 putative oxidoreducta 97.8 2.5E-05 5.4E-10 66.4 5.1 39 27-65 9-47 (897)
241 PLN02785 Protein HOTHEAD 97.8 3.2E-05 7E-10 63.0 5.2 36 29-65 53-88 (587)
242 KOG2852 Possible oxidoreductas 97.8 2.1E-05 4.6E-10 59.1 3.7 80 30-119 9-94 (380)
243 KOG1335 Dihydrolipoamide dehyd 97.8 3.9E-05 8.4E-10 59.7 5.1 41 30-70 38-78 (506)
244 KOG1276 Protoporphyrinogen oxi 97.8 6.9E-05 1.5E-09 58.8 6.3 44 29-72 9-54 (491)
245 PRK12770 putative glutamate sy 97.8 5E-05 1.1E-09 57.8 5.5 40 30-69 17-56 (352)
246 TIGR02061 aprA adenosine phosp 97.8 3.8E-05 8.2E-10 62.9 5.1 34 33-66 1-38 (614)
247 COG2907 Predicted NAD/FAD-bind 97.8 4.1E-05 8.9E-10 58.9 4.8 43 30-73 7-49 (447)
248 PRK13984 putative oxidoreducta 97.8 9.7E-05 2.1E-09 60.1 7.2 40 30-69 282-321 (604)
249 KOG0399 Glutamate synthase [Am 97.8 7E-05 1.5E-09 64.8 6.4 65 1-68 1758-1822(2142)
250 PRK07845 flavoprotein disulfid 97.8 5.2E-05 1.1E-09 59.9 5.5 37 33-70 3-39 (466)
251 PTZ00188 adrenodoxin reductase 97.8 6.5E-05 1.4E-09 60.1 5.9 40 30-69 38-78 (506)
252 PRK08255 salicylyl-CoA 5-hydro 97.7 3.9E-05 8.5E-10 64.2 4.5 33 33-65 2-36 (765)
253 PRK07512 L-aspartate oxidase; 97.7 5.2E-05 1.1E-09 60.8 4.7 36 28-65 6-41 (513)
254 TIGR03452 mycothione_red mycot 97.7 6.3E-05 1.4E-09 59.3 5.1 38 31-71 2-39 (452)
255 PRK07846 mycothione reductase; 97.7 6E-05 1.3E-09 59.4 4.8 38 31-71 1-38 (451)
256 TIGR03378 glycerol3P_GlpB glyc 97.6 9.1E-05 2E-09 58.2 4.8 33 32-64 1-33 (419)
257 TIGR01811 sdhA_Bsu succinate d 97.6 7.4E-05 1.6E-09 61.0 4.4 34 34-67 1-34 (603)
258 TIGR00136 gidA glucose-inhibit 97.6 0.0001 2.2E-09 60.4 5.1 33 32-64 1-33 (617)
259 PF00996 GDI: GDP dissociation 97.6 0.00012 2.7E-09 57.7 5.0 45 28-72 1-45 (438)
260 KOG4254 Phytoene desaturase [C 97.5 0.00014 3.1E-09 57.5 4.8 44 29-72 12-55 (561)
261 PF04820 Trp_halogenase: Trypt 97.5 0.00014 2.9E-09 57.6 4.3 32 33-64 1-35 (454)
262 KOG2665 Predicted FAD-dependen 97.5 0.00036 7.9E-09 53.3 6.0 42 27-68 44-87 (453)
263 COG0445 GidA Flavin-dependent 97.4 0.00015 3.3E-09 58.5 3.6 34 30-63 3-36 (621)
264 KOG2960 Protein involved in th 97.4 4.9E-05 1.1E-09 55.2 0.3 41 31-71 76-118 (328)
265 PRK09754 phenylpropionate diox 97.3 0.00035 7.6E-09 54.0 4.9 36 31-66 3-40 (396)
266 KOG0042 Glycerol-3-phosphate d 97.3 9.3E-05 2E-09 59.7 1.7 41 29-69 65-105 (680)
267 KOG1238 Glucose dehydrogenase/ 97.3 0.00027 5.8E-09 57.7 4.3 39 28-66 54-93 (623)
268 PF01593 Amino_oxidase: Flavin 97.3 0.00053 1.2E-08 51.6 5.3 36 41-76 1-36 (450)
269 PRK09564 coenzyme A disulfide 97.3 0.00042 9E-09 54.1 4.6 34 33-66 2-37 (444)
270 TIGR02485 CobZ_N-term precorri 97.3 0.0003 6.5E-09 54.9 3.6 30 36-65 1-30 (432)
271 COG3634 AhpF Alkyl hydroperoxi 97.2 0.00039 8.5E-09 53.8 4.0 40 29-70 209-248 (520)
272 PRK13512 coenzyme A disulfide 97.2 0.00051 1.1E-08 53.9 4.8 35 33-67 3-39 (438)
273 PTZ00318 NADH dehydrogenase-li 97.2 0.00057 1.2E-08 53.4 4.5 38 29-66 8-45 (424)
274 PRK09897 hypothetical protein; 97.2 0.00066 1.4E-08 54.9 4.9 36 32-67 2-39 (534)
275 KOG2311 NAD/FAD-utilizing prot 97.2 0.00053 1.1E-08 54.9 4.1 37 27-63 24-60 (679)
276 KOG2853 Possible oxidoreductas 97.2 0.0018 3.9E-08 50.1 6.8 39 30-68 85-127 (509)
277 COG1206 Gid NAD(FAD)-utilizing 97.2 0.00072 1.5E-08 51.9 4.6 39 31-69 3-41 (439)
278 COG0446 HcaD Uncharacterized N 97.1 0.0008 1.7E-08 51.1 4.7 39 31-69 136-174 (415)
279 COG0029 NadB Aspartate oxidase 97.0 0.00073 1.6E-08 53.9 3.9 34 33-67 9-42 (518)
280 KOG2844 Dimethylglycine dehydr 97.0 0.0061 1.3E-07 50.6 8.5 45 25-69 33-78 (856)
281 KOG2404 Fumarate reductase, fl 96.9 0.0018 3.9E-08 49.8 4.8 40 33-72 11-50 (477)
282 KOG4716 Thioredoxin reductase 96.9 0.0012 2.6E-08 51.0 3.9 34 29-62 17-50 (503)
283 KOG0404 Thioredoxin reductase 96.9 0.0026 5.7E-08 46.7 5.4 36 28-63 5-40 (322)
284 KOG1800 Ferredoxin/adrenodoxin 96.9 0.0012 2.7E-08 51.4 3.8 39 30-68 19-59 (468)
285 PF13454 NAD_binding_9: FAD-NA 96.7 0.0022 4.7E-08 43.6 3.8 31 35-65 1-36 (156)
286 KOG0405 Pyridine nucleotide-di 96.7 0.0039 8.5E-08 48.3 5.4 43 29-71 18-60 (478)
287 TIGR03169 Nterm_to_SelD pyridi 96.7 0.0022 4.7E-08 48.8 4.0 33 33-65 1-36 (364)
288 KOG4405 GDP dissociation inhib 96.7 0.0024 5.2E-08 50.3 4.2 45 28-72 5-49 (547)
289 PF13434 K_oxygenase: L-lysine 96.7 0.0019 4.2E-08 49.4 3.5 36 31-66 2-38 (341)
290 PRK04965 NADH:flavorubredoxin 96.6 0.004 8.6E-08 47.8 5.1 34 32-65 3-38 (377)
291 KOG3855 Monooxygenase involved 96.6 0.0034 7.5E-08 49.4 4.4 37 28-64 33-73 (481)
292 PF06039 Mqo: Malate:quinone o 96.6 0.022 4.7E-07 45.5 8.7 39 30-68 2-42 (488)
293 KOG3851 Sulfide:quinone oxidor 96.5 0.0045 9.8E-08 47.5 4.5 41 29-69 37-79 (446)
294 PRK09754 phenylpropionate diox 96.4 0.0062 1.3E-07 47.1 4.7 35 32-66 145-179 (396)
295 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.006 1.3E-07 42.6 3.9 32 33-64 1-32 (180)
296 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0065 1.4E-07 41.3 3.7 32 33-64 1-32 (157)
297 PRK05976 dihydrolipoamide dehy 96.2 0.0082 1.8E-07 47.5 4.8 35 32-66 181-215 (472)
298 COG0569 TrkA K+ transport syst 96.2 0.008 1.7E-07 43.4 4.3 33 33-65 2-34 (225)
299 PRK07251 pyridine nucleotide-d 96.2 0.01 2.2E-07 46.4 5.1 35 32-66 158-192 (438)
300 PRK02705 murD UDP-N-acetylmura 96.2 0.0075 1.6E-07 47.4 4.3 34 33-66 2-35 (459)
301 PRK01438 murD UDP-N-acetylmura 96.2 0.0086 1.9E-07 47.4 4.6 33 32-64 17-49 (480)
302 PRK04965 NADH:flavorubredoxin 96.2 0.0099 2.1E-07 45.6 4.8 35 32-66 142-176 (377)
303 TIGR01350 lipoamide_DH dihydro 96.1 0.011 2.5E-07 46.3 5.1 35 32-66 171-205 (461)
304 PF02558 ApbA: Ketopantoate re 96.1 0.013 2.8E-07 39.1 4.6 31 34-64 1-31 (151)
305 COG1252 Ndh NADH dehydrogenase 96.1 0.012 2.5E-07 46.3 4.8 36 31-66 3-40 (405)
306 PRK06416 dihydrolipoamide dehy 96.0 0.013 2.9E-07 46.0 4.8 35 32-66 173-207 (462)
307 PRK06912 acoL dihydrolipoamide 96.0 0.014 3E-07 46.0 4.9 35 32-66 171-205 (458)
308 TIGR02053 MerA mercuric reduct 96.0 0.015 3.3E-07 45.8 5.1 35 32-66 167-201 (463)
309 PRK06467 dihydrolipoamide dehy 95.9 0.014 3.1E-07 46.3 4.9 35 32-66 175-209 (471)
310 PRK06370 mercuric reductase; V 95.9 0.017 3.7E-07 45.5 5.0 35 32-66 172-206 (463)
311 COG1249 Lpd Pyruvate/2-oxoglut 95.9 0.016 3.5E-07 46.1 4.8 37 31-67 173-209 (454)
312 TIGR01421 gluta_reduc_1 glutat 95.8 0.017 3.6E-07 45.6 4.9 34 32-65 167-200 (450)
313 TIGR03385 CoA_CoA_reduc CoA-di 95.8 0.017 3.7E-07 44.9 4.8 35 32-66 138-172 (427)
314 PRK06115 dihydrolipoamide dehy 95.8 0.018 3.9E-07 45.6 4.9 35 32-66 175-209 (466)
315 PRK07846 mycothione reductase; 95.7 0.019 4.1E-07 45.4 4.8 35 32-66 167-201 (451)
316 PRK13512 coenzyme A disulfide 95.7 0.017 3.8E-07 45.3 4.6 34 32-65 149-182 (438)
317 TIGR02374 nitri_red_nirB nitri 95.7 0.016 3.4E-07 48.9 4.6 34 34-67 1-37 (785)
318 PRK05249 soluble pyridine nucl 95.7 0.019 4.2E-07 45.1 4.8 35 32-66 176-210 (461)
319 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.016 3.5E-07 43.5 4.2 32 33-64 4-35 (308)
320 PRK07818 dihydrolipoamide dehy 95.7 0.022 4.8E-07 45.0 5.0 34 32-65 173-206 (466)
321 PRK06292 dihydrolipoamide dehy 95.7 0.023 5E-07 44.6 5.1 35 32-66 170-204 (460)
322 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.013 2.9E-07 41.1 3.3 32 33-64 2-33 (185)
323 COG4529 Uncharacterized protei 95.7 0.021 4.6E-07 45.5 4.8 37 32-68 2-41 (474)
324 PRK14106 murD UDP-N-acetylmura 95.6 0.023 5.1E-07 44.5 4.9 34 31-64 5-38 (450)
325 TIGR03452 mycothione_red mycot 95.5 0.026 5.6E-07 44.6 4.9 35 32-66 170-204 (452)
326 PRK07819 3-hydroxybutyryl-CoA 95.5 0.024 5.2E-07 42.3 4.5 33 33-65 7-39 (286)
327 PRK06249 2-dehydropantoate 2-r 95.5 0.029 6.4E-07 42.1 5.0 33 32-64 6-38 (313)
328 PRK14989 nitrite reductase sub 95.5 0.023 5E-07 48.5 4.9 35 33-67 5-43 (847)
329 PRK06327 dihydrolipoamide dehy 95.4 0.03 6.4E-07 44.5 4.8 35 32-66 184-218 (475)
330 PRK09260 3-hydroxybutyryl-CoA 95.3 0.028 6.2E-07 41.7 4.2 32 33-64 3-34 (288)
331 PRK05708 2-dehydropantoate 2-r 95.3 0.037 8E-07 41.6 4.8 33 32-64 3-35 (305)
332 PRK08293 3-hydroxybutyryl-CoA 95.3 0.031 6.7E-07 41.5 4.3 32 33-64 5-36 (287)
333 PRK07530 3-hydroxybutyryl-CoA 95.3 0.034 7.4E-07 41.3 4.6 33 32-64 5-37 (292)
334 PRK09564 coenzyme A disulfide 95.3 0.035 7.6E-07 43.3 4.8 34 32-65 150-183 (444)
335 PF13738 Pyr_redox_3: Pyridine 95.3 0.028 6.1E-07 38.9 3.9 35 31-65 167-201 (203)
336 PRK07845 flavoprotein disulfid 95.2 0.041 8.9E-07 43.6 5.1 35 32-66 178-212 (466)
337 TIGR02374 nitri_red_nirB nitri 95.2 0.03 6.6E-07 47.3 4.5 35 32-66 141-175 (785)
338 PRK07066 3-hydroxybutyryl-CoA 95.2 0.032 7E-07 42.5 4.3 32 33-64 9-40 (321)
339 PRK06522 2-dehydropantoate 2-r 95.2 0.036 7.8E-07 41.0 4.4 31 33-63 2-32 (304)
340 TIGR01424 gluta_reduc_2 glutat 95.2 0.04 8.6E-07 43.4 4.8 35 32-66 167-201 (446)
341 PRK06116 glutathione reductase 95.2 0.04 8.6E-07 43.3 4.8 34 32-65 168-201 (450)
342 KOG1439 RAB proteins geranylge 95.1 0.011 2.3E-07 46.4 1.5 41 29-69 2-42 (440)
343 PRK12921 2-dehydropantoate 2-r 95.1 0.039 8.5E-07 40.9 4.5 30 33-62 2-31 (305)
344 PRK08010 pyridine nucleotide-d 95.1 0.043 9.3E-07 43.0 4.8 35 32-66 159-193 (441)
345 TIGR03140 AhpF alkyl hydropero 95.0 0.039 8.5E-07 44.3 4.6 35 32-66 353-387 (515)
346 COG5044 MRS6 RAB proteins gera 95.0 0.046 1E-06 42.6 4.6 39 31-69 6-44 (434)
347 PLN02507 glutathione reductase 95.0 0.046 1E-06 43.8 4.8 34 32-65 204-237 (499)
348 PTZ00058 glutathione reductase 95.0 0.043 9.3E-07 44.8 4.7 36 31-66 237-272 (561)
349 PRK14989 nitrite reductase sub 95.0 0.041 8.8E-07 47.0 4.7 33 33-65 147-179 (847)
350 PF01262 AlaDh_PNT_C: Alanine 94.9 0.057 1.2E-06 37.1 4.6 35 30-64 19-53 (168)
351 TIGR01470 cysG_Nterm siroheme 94.9 0.051 1.1E-06 38.8 4.4 33 32-64 10-42 (205)
352 PF02254 TrkA_N: TrkA-N domain 94.9 0.056 1.2E-06 34.3 4.3 31 34-64 1-31 (116)
353 PF00899 ThiF: ThiF family; I 94.9 0.053 1.1E-06 35.7 4.2 35 31-65 2-37 (135)
354 PRK06035 3-hydroxyacyl-CoA deh 94.9 0.043 9.3E-07 40.8 4.2 33 33-65 5-37 (291)
355 PRK13748 putative mercuric red 94.9 0.049 1.1E-06 43.9 4.8 33 32-64 271-303 (561)
356 PRK06719 precorrin-2 dehydroge 94.9 0.055 1.2E-06 37.0 4.3 33 31-63 13-45 (157)
357 PRK14694 putative mercuric red 94.8 0.057 1.2E-06 42.7 4.9 33 32-64 179-211 (468)
358 PTZ00153 lipoamide dehydrogena 94.8 0.052 1.1E-06 45.2 4.8 36 32-67 313-348 (659)
359 TIGR01316 gltA glutamate synth 94.8 0.051 1.1E-06 42.9 4.6 33 32-64 273-305 (449)
360 TIGR02354 thiF_fam2 thiamine b 94.8 0.062 1.3E-06 38.2 4.6 34 30-63 20-54 (200)
361 PRK05808 3-hydroxybutyryl-CoA 94.8 0.048 1E-06 40.3 4.2 32 33-64 5-36 (282)
362 TIGR03143 AhpF_homolog putativ 94.8 0.048 1E-06 44.2 4.5 34 32-65 144-177 (555)
363 PF06100 Strep_67kDa_ant: Stre 94.7 0.092 2E-06 42.3 5.8 39 32-70 3-45 (500)
364 PRK08229 2-dehydropantoate 2-r 94.7 0.059 1.3E-06 40.7 4.5 32 33-64 4-35 (341)
365 PF01488 Shikimate_DH: Shikima 94.7 0.093 2E-06 34.8 4.9 35 30-64 11-46 (135)
366 PRK10262 thioredoxin reductase 94.6 0.064 1.4E-06 40.1 4.6 35 32-66 147-181 (321)
367 PRK14727 putative mercuric red 94.6 0.068 1.5E-06 42.5 4.9 33 32-64 189-221 (479)
368 PRK06130 3-hydroxybutyryl-CoA 94.6 0.07 1.5E-06 39.9 4.7 33 32-64 5-37 (311)
369 TIGR01292 TRX_reduct thioredox 94.5 0.071 1.5E-06 38.9 4.5 35 32-66 142-176 (300)
370 PRK06718 precorrin-2 dehydroge 94.5 0.074 1.6E-06 37.8 4.4 33 31-63 10-42 (202)
371 PRK12831 putative oxidoreducta 94.5 0.063 1.4E-06 42.7 4.5 33 32-64 282-314 (464)
372 TIGR00518 alaDH alanine dehydr 94.5 0.078 1.7E-06 41.1 4.8 34 30-63 166-199 (370)
373 cd00401 AdoHcyase S-adenosyl-L 94.5 0.068 1.5E-06 42.2 4.5 33 32-64 203-235 (413)
374 PRK15317 alkyl hydroperoxide r 94.4 0.069 1.5E-06 42.9 4.6 35 32-66 352-386 (517)
375 PTZ00052 thioredoxin reductase 94.4 0.067 1.5E-06 42.9 4.5 32 32-63 183-214 (499)
376 PF13478 XdhC_C: XdhC Rossmann 94.4 0.058 1.3E-06 36.1 3.5 32 34-65 1-32 (136)
377 COG3486 IucD Lysine/ornithine 94.4 0.058 1.2E-06 42.5 3.9 40 27-66 1-41 (436)
378 TIGR01438 TGR thioredoxin and 94.4 0.072 1.6E-06 42.5 4.6 32 32-63 181-212 (484)
379 PLN02546 glutathione reductase 94.4 0.076 1.6E-06 43.3 4.7 35 32-66 253-287 (558)
380 PF13241 NAD_binding_7: Putati 94.4 0.042 9.2E-07 34.7 2.6 34 31-64 7-40 (103)
381 PRK12770 putative glutamate sy 94.4 0.079 1.7E-06 40.3 4.6 33 32-64 173-206 (352)
382 PRK15116 sulfur acceptor prote 94.2 0.11 2.3E-06 38.8 4.8 35 30-64 29-64 (268)
383 PRK09424 pntA NAD(P) transhydr 94.2 0.18 4E-06 40.8 6.4 35 30-64 164-198 (509)
384 TIGR02964 xanthine_xdhC xanthi 94.1 0.1 2.2E-06 38.3 4.6 36 30-65 99-134 (246)
385 TIGR01423 trypano_reduc trypan 94.1 0.097 2.1E-06 41.9 4.7 35 32-66 188-225 (486)
386 PLN02545 3-hydroxybutyryl-CoA 94.0 0.1 2.3E-06 38.8 4.5 32 33-64 6-37 (295)
387 cd05311 NAD_bind_2_malic_enz N 93.9 0.22 4.7E-06 36.0 5.9 32 32-63 26-60 (226)
388 cd01483 E1_enzyme_family Super 93.9 0.14 3E-06 33.9 4.6 32 33-64 1-33 (143)
389 COG1252 Ndh NADH dehydrogenase 93.8 0.057 1.2E-06 42.5 2.9 38 30-67 154-204 (405)
390 TIGR03026 NDP-sugDHase nucleot 93.8 0.093 2E-06 41.0 4.1 32 33-64 2-33 (411)
391 TIGR01763 MalateDH_bact malate 93.8 0.12 2.6E-06 39.0 4.6 32 33-64 3-35 (305)
392 cd01080 NAD_bind_m-THF_DH_Cycl 93.8 0.32 6.9E-06 33.7 6.3 35 30-64 43-78 (168)
393 cd01487 E1_ThiF_like E1_ThiF_l 93.8 0.15 3.2E-06 35.4 4.7 32 33-64 1-33 (174)
394 TIGR03467 HpnE squalene-associ 93.8 0.073 1.6E-06 40.7 3.4 29 45-73 1-29 (419)
395 PRK07688 thiamine/molybdopteri 93.8 0.14 3E-06 39.3 4.9 36 29-64 22-58 (339)
396 PRK00094 gpsA NAD(P)H-dependen 93.8 0.11 2.4E-06 38.8 4.3 32 33-64 3-34 (325)
397 PRK14194 bifunctional 5,10-met 93.8 0.25 5.4E-06 37.5 6.1 33 32-64 160-193 (301)
398 PTZ00318 NADH dehydrogenase-li 93.8 0.12 2.5E-06 40.5 4.6 33 33-65 175-221 (424)
399 PRK14192 bifunctional 5,10-met 93.7 0.28 6.1E-06 36.8 6.4 31 33-63 161-192 (283)
400 PRK12475 thiamine/molybdopteri 93.7 0.13 2.9E-06 39.4 4.7 35 30-64 23-58 (338)
401 cd05292 LDH_2 A subgroup of L- 93.7 0.13 2.8E-06 38.8 4.5 32 33-64 2-35 (308)
402 PRK11064 wecC UDP-N-acetyl-D-m 93.7 0.1 2.2E-06 41.0 4.1 33 32-64 4-36 (415)
403 PRK04148 hypothetical protein; 93.7 0.077 1.7E-06 35.6 2.9 33 32-65 18-50 (134)
404 PRK08644 thiamine biosynthesis 93.6 0.17 3.6E-06 36.3 4.8 36 29-64 26-62 (212)
405 PRK14618 NAD(P)H-dependent gly 93.6 0.15 3.4E-06 38.4 4.8 32 33-64 6-37 (328)
406 PRK14619 NAD(P)H-dependent gly 93.6 0.16 3.4E-06 38.2 4.8 33 32-64 5-37 (308)
407 PRK02472 murD UDP-N-acetylmura 93.6 0.13 2.9E-06 40.2 4.6 32 33-64 7-38 (447)
408 TIGR02356 adenyl_thiF thiazole 93.6 0.17 3.6E-06 35.9 4.7 36 29-64 19-55 (202)
409 PRK14620 NAD(P)H-dependent gly 93.6 0.14 3E-06 38.6 4.5 32 33-64 2-33 (326)
410 TIGR02355 moeB molybdopterin s 93.6 0.16 3.5E-06 37.0 4.8 36 29-64 22-58 (240)
411 PF00670 AdoHcyase_NAD: S-aden 93.5 0.13 2.7E-06 35.7 3.9 33 32-64 24-56 (162)
412 PRK14175 bifunctional 5,10-met 93.5 0.34 7.3E-06 36.5 6.5 33 32-64 159-192 (286)
413 KOG2755 Oxidoreductase [Genera 93.5 0.076 1.6E-06 39.9 2.9 32 33-64 1-34 (334)
414 COG2509 Uncharacterized FAD-de 93.5 0.11 2.4E-06 41.5 3.9 40 27-66 14-58 (486)
415 PRK10669 putative cation:proto 93.5 0.14 2.9E-06 41.6 4.6 35 31-65 417-451 (558)
416 COG1748 LYS9 Saccharopine dehy 93.5 0.14 3E-06 40.1 4.5 32 33-64 3-35 (389)
417 PTZ00082 L-lactate dehydrogena 93.4 0.19 4.1E-06 38.2 5.0 35 31-65 6-41 (321)
418 PRK05690 molybdopterin biosynt 93.4 0.17 3.8E-06 37.0 4.6 36 29-64 30-66 (245)
419 PRK07531 bifunctional 3-hydrox 93.3 0.15 3.3E-06 40.9 4.6 32 33-64 6-37 (495)
420 PF03446 NAD_binding_2: NAD bi 93.3 0.16 3.4E-06 34.6 4.1 32 33-64 3-34 (163)
421 PRK11749 dihydropyrimidine deh 93.3 0.16 3.5E-06 40.1 4.6 34 31-64 273-307 (457)
422 PRK05866 short chain dehydroge 93.3 0.54 1.2E-05 34.8 7.2 62 3-64 4-74 (293)
423 cd00757 ThiF_MoeB_HesA_family 93.2 0.19 4.1E-06 36.2 4.6 35 30-64 20-55 (228)
424 TIGR00936 ahcY adenosylhomocys 93.2 0.15 3.4E-06 40.1 4.4 34 31-64 195-228 (406)
425 PRK07417 arogenate dehydrogena 93.2 0.13 2.9E-06 38.0 3.8 32 33-64 2-33 (279)
426 cd01075 NAD_bind_Leu_Phe_Val_D 93.2 0.18 3.9E-06 35.7 4.3 33 32-64 29-61 (200)
427 PRK00066 ldh L-lactate dehydro 93.1 0.22 4.7E-06 37.8 5.0 35 30-64 5-41 (315)
428 PRK11730 fadB multifunctional 93.1 0.14 2.9E-06 43.1 4.1 33 32-64 314-346 (715)
429 PRK08328 hypothetical protein; 93.0 0.22 4.7E-06 36.1 4.7 35 30-64 26-61 (231)
430 PRK12778 putative bifunctional 93.0 0.18 3.9E-06 42.4 4.7 33 32-64 571-604 (752)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.9 0.16 3.5E-06 41.0 4.2 33 33-65 7-39 (503)
432 PF00056 Ldh_1_N: lactate/mala 92.9 0.26 5.6E-06 33.0 4.6 32 33-64 2-36 (141)
433 TIGR00561 pntA NAD(P) transhyd 92.9 0.37 8E-06 39.1 6.2 34 31-64 164-197 (511)
434 PRK06223 malate dehydrogenase; 92.9 0.22 4.7E-06 37.2 4.6 32 33-64 4-36 (307)
435 PRK04308 murD UDP-N-acetylmura 92.8 0.24 5.2E-06 38.9 5.0 34 32-65 6-39 (445)
436 cd01492 Aos1_SUMO Ubiquitin ac 92.8 0.25 5.5E-06 34.9 4.7 35 30-64 20-55 (197)
437 cd01078 NAD_bind_H4MPT_DH NADP 92.8 0.44 9.5E-06 33.2 5.9 32 32-63 29-61 (194)
438 PRK09496 trkA potassium transp 92.8 0.18 4E-06 39.4 4.3 32 33-64 2-33 (453)
439 PRK08306 dipicolinate synthase 92.8 0.22 4.8E-06 37.4 4.5 34 31-64 152-185 (296)
440 PRK12549 shikimate 5-dehydroge 92.7 0.21 4.5E-06 37.4 4.3 33 32-64 128-161 (284)
441 TIGR02437 FadB fatty oxidation 92.7 0.16 3.5E-06 42.6 4.1 33 32-64 314-346 (714)
442 cd01065 NAD_bind_Shikimate_DH 92.7 0.46 1E-05 31.5 5.7 33 32-64 20-53 (155)
443 PRK08268 3-hydroxy-acyl-CoA de 92.7 0.18 3.9E-06 40.7 4.2 34 32-65 8-41 (507)
444 cd01485 E1-1_like Ubiquitin ac 92.6 0.28 6E-06 34.7 4.7 35 30-64 18-53 (198)
445 PRK01710 murD UDP-N-acetylmura 92.6 0.2 4.3E-06 39.6 4.3 32 33-64 16-47 (458)
446 cd01339 LDH-like_MDH L-lactate 92.6 0.21 4.6E-06 37.3 4.2 31 34-64 1-32 (300)
447 KOG2304 3-hydroxyacyl-CoA dehy 92.6 0.16 3.5E-06 37.4 3.4 37 29-65 9-45 (298)
448 TIGR02853 spore_dpaA dipicolin 92.5 0.21 4.6E-06 37.4 4.2 33 32-64 152-184 (287)
449 PRK03369 murD UDP-N-acetylmura 92.5 0.2 4.3E-06 40.1 4.2 31 33-63 14-44 (488)
450 PRK05476 S-adenosyl-L-homocyst 92.4 0.22 4.8E-06 39.4 4.4 33 32-64 213-245 (425)
451 cd05291 HicDH_like L-2-hydroxy 92.4 0.26 5.7E-06 37.0 4.6 32 33-64 2-35 (306)
452 PRK08223 hypothetical protein; 92.3 0.28 6E-06 37.0 4.5 36 29-64 25-61 (287)
453 cd00755 YgdL_like Family of ac 92.3 0.3 6.5E-06 35.6 4.6 35 30-64 10-45 (231)
454 cd05293 LDH_1 A subgroup of L- 92.3 0.31 6.8E-06 36.9 4.9 34 31-64 3-38 (312)
455 TIGR01505 tartro_sem_red 2-hyd 92.1 0.22 4.8E-06 36.9 3.9 32 33-64 1-32 (291)
456 COG1004 Ugd Predicted UDP-gluc 92.0 0.27 5.9E-06 38.7 4.2 32 33-64 2-33 (414)
457 TIGR02441 fa_ox_alpha_mit fatt 92.0 0.22 4.7E-06 42.1 4.0 33 32-64 336-368 (737)
458 TIGR01915 npdG NADPH-dependent 91.9 0.32 7E-06 34.7 4.4 32 33-64 2-34 (219)
459 PRK09496 trkA potassium transp 91.9 0.28 6.2E-06 38.3 4.4 35 31-65 231-265 (453)
460 KOG2495 NADH-dehydrogenase (ub 91.9 0.12 2.6E-06 41.1 2.2 36 30-65 217-266 (491)
461 COG1063 Tdh Threonine dehydrog 91.8 0.28 6E-06 37.6 4.1 32 33-64 171-203 (350)
462 PRK03562 glutathione-regulated 91.8 0.28 6.1E-06 40.5 4.4 35 31-65 400-434 (621)
463 PTZ00117 malate dehydrogenase; 91.7 0.4 8.6E-06 36.4 4.8 35 30-64 4-39 (319)
464 PRK03803 murD UDP-N-acetylmura 91.5 0.36 7.8E-06 37.9 4.6 34 31-64 6-39 (448)
465 PRK04690 murD UDP-N-acetylmura 91.5 0.3 6.5E-06 38.9 4.2 32 33-64 10-41 (468)
466 PLN02494 adenosylhomocysteinas 91.5 0.36 7.9E-06 38.8 4.5 33 32-64 255-287 (477)
467 PRK12548 shikimate 5-dehydroge 91.4 0.45 9.7E-06 35.6 4.8 33 32-64 127-160 (289)
468 PRK12779 putative bifunctional 91.3 0.34 7.4E-06 42.0 4.6 33 32-64 448-480 (944)
469 PRK14188 bifunctional 5,10-met 91.3 0.87 1.9E-05 34.5 6.2 30 32-61 159-189 (296)
470 COG1250 FadB 3-hydroxyacyl-CoA 91.3 0.33 7.2E-06 36.9 4.0 32 33-64 5-36 (307)
471 PRK05600 thiamine biosynthesis 91.3 0.45 9.8E-06 37.0 4.8 36 29-64 39-75 (370)
472 PRK05597 molybdopterin biosynt 91.3 0.43 9.3E-06 36.8 4.7 36 29-64 26-62 (355)
473 PRK03659 glutathione-regulated 91.2 0.37 8E-06 39.7 4.5 36 30-65 399-434 (601)
474 PRK14191 bifunctional 5,10-met 91.2 1 2.2E-05 33.9 6.5 32 32-63 158-190 (285)
475 PRK15057 UDP-glucose 6-dehydro 91.2 0.33 7.2E-06 37.9 4.1 31 33-64 2-32 (388)
476 cd05290 LDH_3 A subgroup of L- 91.2 0.47 1E-05 35.9 4.7 32 33-64 1-34 (307)
477 KOG3923 D-aspartate oxidase [A 91.1 1.4 3.1E-05 33.6 7.2 32 30-61 2-40 (342)
478 PRK11154 fadJ multifunctional 91.1 0.3 6.6E-06 41.0 4.0 33 32-64 310-343 (708)
479 cd01484 E1-2_like Ubiquitin ac 91.1 0.5 1.1E-05 34.5 4.7 32 33-64 1-33 (234)
480 TIGR02440 FadJ fatty oxidation 91.1 0.33 7.2E-06 40.7 4.2 33 32-64 305-338 (699)
481 TIGR00507 aroE shikimate 5-deh 91.0 0.44 9.6E-06 35.1 4.4 32 32-63 118-149 (270)
482 PRK15461 NADH-dependent gamma- 90.9 0.39 8.5E-06 35.9 4.1 32 33-64 3-34 (296)
483 PRK07878 molybdopterin biosynt 90.8 0.47 1E-05 37.0 4.6 35 30-64 41-76 (392)
484 PRK08762 molybdopterin biosynt 90.8 0.5 1.1E-05 36.6 4.7 34 30-63 134-168 (376)
485 cd01488 Uba3_RUB Ubiquitin act 90.7 0.47 1E-05 35.8 4.4 32 33-64 1-33 (291)
486 TIGR03736 PRTRC_ThiF PRTRC sys 90.7 0.49 1.1E-05 34.8 4.4 36 29-64 9-55 (244)
487 cd05191 NAD_bind_amino_acid_DH 90.7 0.63 1.4E-05 28.2 4.2 31 32-62 24-55 (86)
488 PRK07411 hypothetical protein; 90.7 0.48 1E-05 37.0 4.6 36 29-64 36-72 (390)
489 cd01491 Ube1_repeat1 Ubiquitin 90.6 0.55 1.2E-05 35.3 4.6 35 30-64 18-53 (286)
490 PRK08017 oxidoreductase; Provi 90.6 0.56 1.2E-05 33.4 4.6 32 33-64 4-36 (256)
491 PRK02006 murD UDP-N-acetylmura 90.6 0.4 8.7E-06 38.3 4.1 32 33-64 9-40 (498)
492 cd01489 Uba2_SUMO Ubiquitin ac 90.6 0.49 1.1E-05 36.0 4.3 32 33-64 1-33 (312)
493 PRK07502 cyclohexadienyl dehyd 90.6 0.39 8.4E-06 35.9 3.8 32 33-64 8-41 (307)
494 COG1893 ApbA Ketopantoate redu 90.5 0.43 9.4E-06 36.1 4.1 32 33-64 2-33 (307)
495 PLN02353 probable UDP-glucose 90.5 0.44 9.5E-06 38.3 4.2 32 33-64 3-36 (473)
496 PTZ00075 Adenosylhomocysteinas 90.5 0.5 1.1E-05 38.0 4.5 34 31-64 254-287 (476)
497 cd05312 NAD_bind_1_malic_enz N 90.5 0.84 1.8E-05 34.3 5.5 34 31-64 25-69 (279)
498 PRK00141 murD UDP-N-acetylmura 90.4 0.46 1E-05 37.8 4.3 31 33-63 17-47 (473)
499 PLN00112 malate dehydrogenase 90.4 0.47 1E-05 37.8 4.3 38 27-64 96-143 (444)
500 PRK08217 fabG 3-ketoacyl-(acyl 90.4 0.7 1.5E-05 32.6 4.9 33 32-64 6-39 (253)
No 1
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.5e-10 Score=83.35 Aligned_cols=63 Identities=32% Similarity=0.412 Sum_probs=52.4
Q ss_pred CchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 3 ETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
....+|++++.+.+++-... -...||+|+|+||+|+++|++|+++|++|+++|+.-.+||..|
T Consensus 8 ~~E~~itraI~~~~~~~l~~------~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 8 LREVKITRAITERYFEDLLD------YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHh------hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 45678889988777654433 3467999999999999999999999999999999988887654
No 2
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.00 E-value=6.5e-10 Score=81.74 Aligned_cols=63 Identities=33% Similarity=0.390 Sum_probs=53.9
Q ss_pred CCCchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 1 MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
|....++|++++.+.+++-... ...+||+|||+|++|+.+|+.|+++|++|+++|+...+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~------~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 1 MELDEVKITRAIVEEYFEKLLD------YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred CCchHHHHHHHHHHHHHHHHHH------hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 4567789999999887765555 55789999999999999999999999999999999877764
No 3
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=2.9e-09 Score=84.87 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=57.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhh
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITI 99 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~ 99 (119)
..+..+|+|||||++|+++|.+|...|++|+|+|.++.+||+.++.....+-++..+..+-.+...||+..+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l 83 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALL 83 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHH
Confidence 356789999999999999999999999999999999999999887766555555555555555556666553
No 4
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.92 E-value=1.7e-09 Score=79.49 Aligned_cols=59 Identities=34% Similarity=0.423 Sum_probs=48.8
Q ss_pred HHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 6 STIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+.|+++|.+.+++-... ...+|++|||+|++|+.+|+.|++.|++|+++||...+|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~------~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 2 SKISRAIVERYFEDLLD------YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred chhHHHHHHHHHHHHHH------hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46778887776554433 357899999999999999999999999999999998887653
No 5
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.92 E-value=4.9e-10 Score=80.45 Aligned_cols=43 Identities=42% Similarity=0.421 Sum_probs=35.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
...+|++|||+||+|+++|+.|++.|++|+++|+...+|+..+
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 4578999999999999999999999999999999988887543
No 6
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.88 E-value=4.9e-09 Score=80.85 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=60.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCc---hhhhHHHHHHH
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNP---MITIQSTAYCL 106 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p---~~~~~~~a~~~ 106 (119)
+.+||+|||+|++|+.||..++++|.+|+|+|+.+.+|.+....-.|...+..... ......-+| .+-..+++...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCC
Confidence 46899999999999999999999999999999999988664333223333322222 344555566 66667777777
Q ss_pred HHHHHHHHhh
Q 033419 107 SKRIAESLRE 116 (119)
Q Consensus 107 ~~~l~~~l~~ 116 (119)
.+++..-+..
T Consensus 81 ~~d~i~~~e~ 90 (408)
T COG2081 81 PEDFIDWVEG 90 (408)
T ss_pred HHHHHHHHHh
Confidence 7777665543
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.83 E-value=7.9e-09 Score=82.02 Aligned_cols=44 Identities=41% Similarity=0.555 Sum_probs=39.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
..+|++|||+|+.||++|..|+++|++|+|+||++..||...+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 46899999999999999999999999999999999999875443
No 8
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.83 E-value=1e-08 Score=60.98 Aligned_cols=38 Identities=39% Similarity=0.531 Sum_probs=34.1
Q ss_pred EECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 36 IVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 36 iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
|||+|++|+.+|+.|++.|++|+|+|+.+.+||.....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence 89999999999999999999999999999999876544
No 9
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=9.1e-09 Score=77.64 Aligned_cols=54 Identities=31% Similarity=0.515 Sum_probs=47.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccC----------CCceEEecC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLE----------AEGLYVCDA 84 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~----------~~~l~~~~~ 84 (119)
.+|++|||+|.+|+.+|..+++.|.+|+|+||++++||+.+...+ ||++|+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~ 64 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDN 64 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCc
Confidence 379999999999999999889999999999999999999886655 677777664
No 10
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.81 E-value=6.3e-09 Score=80.40 Aligned_cols=41 Identities=49% Similarity=0.629 Sum_probs=37.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+.+||+|||+||+|+++|+.|++.|++|+++|++..+|...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~ 42 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP 42 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence 47899999999999999999999999999999998888654
No 11
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.75 E-value=6.5e-08 Score=73.54 Aligned_cols=35 Identities=37% Similarity=0.511 Sum_probs=32.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 69999999999999999999999999999997654
No 12
>PLN02268 probable polyamine oxidase
Probab=98.74 E-value=3.3e-08 Score=76.80 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=39.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
.+|+|||+|++|+++|+.|.++|++|+|+|+.+.+||+.++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~ 42 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD 42 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence 479999999999999999999999999999999999987654
No 13
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.74 E-value=1e-07 Score=73.40 Aligned_cols=45 Identities=38% Similarity=0.411 Sum_probs=37.5
Q ss_pred cCCccccccccccEEEECCChHHHHHHHHHHHc-CC-cEEEEecCCc
Q 033419 21 KDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASA-GQ-KVVVIEKGNY 65 (119)
Q Consensus 21 ~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~-g~-~v~v~e~~~~ 65 (119)
.+....+...++||+|||||++|+++|++|+++ |. +|+|+|+...
T Consensus 20 ~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 20 PAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred cccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 344455556789999999999999999999985 85 8999999764
No 14
>PRK07208 hypothetical protein; Provisional
Probab=98.74 E-value=2.5e-08 Score=78.34 Aligned_cols=45 Identities=31% Similarity=0.294 Sum_probs=40.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
|+...||+|||||++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 356779999999999999999999999999999999999987544
No 15
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.73 E-value=1.8e-08 Score=78.67 Aligned_cols=39 Identities=49% Similarity=0.664 Sum_probs=35.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
..|||+|||+||+|+++|+.|+++|++|+|+|+...++.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 469999999999999999999999999999999876653
No 16
>PRK10015 oxidoreductase; Provisional
Probab=98.73 E-value=1.7e-08 Score=78.96 Aligned_cols=40 Identities=45% Similarity=0.650 Sum_probs=36.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
...|||+|||+||+|+++|+.|++.|++|+|+|+.+.+|.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 3569999999999999999999999999999999876653
No 17
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.72 E-value=3.5e-08 Score=77.03 Aligned_cols=37 Identities=35% Similarity=0.593 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
|||+|||||++|+.||..+++.|++|+|+|+++..|-
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk 37 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK 37 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc
Confidence 7999999999999999999999999999999988873
No 18
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.69 E-value=3.1e-08 Score=77.60 Aligned_cols=44 Identities=32% Similarity=0.334 Sum_probs=39.4
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
.+..||++|||+|++|+.+|..|++.|++|+++|+...+||.+.
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 34579999999999999999999999999999999878888753
No 19
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.68 E-value=1.3e-07 Score=71.79 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+||+|||+|++|+++|+.|++.|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999864
No 20
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.68 E-value=1.5e-07 Score=71.51 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
+++||+|||||++|+++|+.|+++|++|+|+|++...+
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~ 39 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPH 39 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence 46899999999999999999999999999999986543
No 21
>PLN02576 protoporphyrinogen oxidase
Probab=98.67 E-value=5.6e-08 Score=76.69 Aligned_cols=46 Identities=35% Similarity=0.354 Sum_probs=40.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCceeecc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPKDYSLL 74 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~~~~~~ 74 (119)
..++||+|||||++||++|++|.+. |++|+|+|+.+.+||..++..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~ 56 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS 56 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec
Confidence 4567999999999999999999999 999999999999998865543
No 22
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.65 E-value=6.2e-08 Score=76.76 Aligned_cols=42 Identities=36% Similarity=0.447 Sum_probs=38.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
+|++|||+|++|+++|..|+++|++|+|+||+..+||.....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEe
Confidence 689999999999999999999999999999999999875543
No 23
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.65 E-value=4.9e-08 Score=76.94 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=35.0
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+....+||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45578999999999999999999999999999999875
No 24
>PLN02463 lycopene beta cyclase
Probab=98.64 E-value=2.8e-08 Score=78.31 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 11 SLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
...++.++++....+++....+|++|||+|++|+++|..|+++|++|+++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 8 ETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred CCccccccccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 3445556666666666667789999999999999999999999999999998753
No 25
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.64 E-value=5.9e-08 Score=75.24 Aligned_cols=41 Identities=27% Similarity=0.376 Sum_probs=37.4
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCceeec
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~~~ 73 (119)
+|+|||||++|+++|+.|++.| ++|+|+|+.+.+||..++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~ 44 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTV 44 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEE
Confidence 5999999999999999999987 8999999999999876654
No 26
>PRK07233 hypothetical protein; Provisional
Probab=98.64 E-value=5.5e-08 Score=74.90 Aligned_cols=40 Identities=35% Similarity=0.421 Sum_probs=37.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
+|+|||+|++|+++|+.|+++|++|+|+|+.+.+||..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 5899999999999999999999999999999999987544
No 27
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.63 E-value=1.3e-07 Score=70.34 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=48.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhHHHHHHHHHHHHH
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTAYCLSKRIAE 112 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~l~~ 112 (119)
|++|||+|++|+++|+.|+++|++|+|+|++ .++..... . ..+++.... ..........+...+...++++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~~aS~-~-~~g~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 73 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGSGASG-R-SGGLVRPGI----SSYPDPQYARLARESVEFWRELAE 73 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTSSGGG-S-SSEEEECSG----SHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccccccc-c-ccccccccc----cccccccccchhhhhccchhhhhh
Confidence 7999999999999999999999999999999 44432111 1 122221111 011122445566667777777755
Q ss_pred HH
Q 033419 113 SL 114 (119)
Q Consensus 113 ~l 114 (119)
+.
T Consensus 74 ~~ 75 (358)
T PF01266_consen 74 EY 75 (358)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 28
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.62 E-value=7.7e-08 Score=75.09 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=39.3
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCceeecc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKDYSLL 74 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~~~~~ 74 (119)
.|++|||||++|+++|+.|+++ |++|+|+|+.+.+||..++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~ 49 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK 49 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe
Confidence 5899999999999999999998 999999999999999866543
No 29
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.61 E-value=5.5e-08 Score=72.28 Aligned_cols=37 Identities=43% Similarity=0.504 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
.+||+|||||++|+.+|..|+++|++|+|+|+.+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 4799999999999999999999999999999987543
No 30
>PRK06370 mercuric reductase; Validated
Probab=98.60 E-value=9.2e-08 Score=75.18 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=37.5
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+|+.+||++|||+||+|+.+|.++++.|++|+++|+. .+||.+
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 43 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTC 43 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCce
Confidence 3566799999999999999999999999999999986 456654
No 31
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.59 E-value=7.3e-08 Score=73.69 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=36.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
|++..+||+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 5567799999999999999999999999999999998643
No 32
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.59 E-value=1e-07 Score=75.37 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=37.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
.|++|||+|++|+++|..|+++|++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 4899999999999999999999999999999999987643
No 33
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.59 E-value=8.4e-08 Score=76.53 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=36.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
|+..+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 45679999999999999999999999999999999865444
No 34
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.59 E-value=9.1e-08 Score=75.73 Aligned_cols=40 Identities=35% Similarity=0.447 Sum_probs=36.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
|+|||+|++||++|..|++.|++|+|+|+++.+||...+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEE
Confidence 6899999999999999999999999999999999875543
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=8.7e-08 Score=75.57 Aligned_cols=40 Identities=35% Similarity=0.397 Sum_probs=36.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+||++|||+||+|+.+|..+++.|++|+|+|+...+||.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 5999999999999999999999999999999866778764
No 36
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=8.8e-08 Score=75.68 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=38.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+.+||++|||+|++|+.+|..+++.|++|+|+|+.+.+||.+.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 4569999999999999999999999999999999877787643
No 37
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.58 E-value=9.1e-08 Score=76.13 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=36.2
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
|...+||+|||||++|+++|+.|+++|++|+|+|+++..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4567999999999999999999999999999999996543
No 38
>PLN02568 polyamine oxidase
Probab=98.58 E-value=2.6e-07 Score=74.37 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=40.8
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcC-----CcEEEEecCCcccCceeec
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAG-----QKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g-----~~v~v~e~~~~~g~~~~~~ 73 (119)
|+.+..||+|||+|++|+++|..|++.| ++|+|+|++..+||...+.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 3456689999999999999999999877 8999999999999875543
No 39
>PRK06116 glutathione reductase; Validated
Probab=98.58 E-value=7.3e-08 Score=75.44 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=36.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+.+||++|||+||+|+.+|..+++.|++|+|+|+. .+||.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 35799999999999999999999999999999986 567654
No 40
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.58 E-value=3e-07 Score=69.87 Aligned_cols=39 Identities=44% Similarity=0.514 Sum_probs=35.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
..++|++|||+|++|+++|+.|++.|.+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 457899999999999999999999999999999887655
No 41
>PLN02661 Putative thiazole synthesis
Probab=98.58 E-value=7.9e-08 Score=73.68 Aligned_cols=42 Identities=33% Similarity=0.335 Sum_probs=37.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~g~~~ 70 (119)
...+|++|||+|++|+.+|+.|++. |++|+++|+...+|+..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 4578999999999999999999975 89999999998877643
No 42
>PRK07045 putative monooxygenase; Reviewed
Probab=98.57 E-value=8.3e-08 Score=73.51 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=35.4
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
++..+||+||||||+|+++|..|+++|++|+|+|+.+..
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 346789999999999999999999999999999998754
No 43
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.57 E-value=2.9e-07 Score=70.83 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=34.4
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTP 68 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~ 68 (119)
.+||+|||||++|+++|+.|+++ |++|+|+|+...++.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~ 41 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPAR 41 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccc
Confidence 47999999999999999999998 999999999875543
No 44
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=1.4e-07 Score=74.42 Aligned_cols=43 Identities=35% Similarity=0.459 Sum_probs=38.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
...||++|||+|++|+.+|..+++.|++|+|+|+. .+||.+..
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 45799999999999999999999999999999986 67776543
No 45
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.55 E-value=9.7e-08 Score=73.25 Aligned_cols=37 Identities=38% Similarity=0.527 Sum_probs=34.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
...+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4678999999999999999999999999999999764
No 46
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.55 E-value=1.2e-07 Score=69.18 Aligned_cols=36 Identities=42% Similarity=0.626 Sum_probs=33.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
|||+|||+|++|+.+|..|++.|++|+|+|+....+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~ 36 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 699999999999999999999999999999987654
No 47
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.54 E-value=9.5e-08 Score=75.28 Aligned_cols=46 Identities=24% Similarity=0.491 Sum_probs=41.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
|+..|||+|||+|.+|+.+|..|++.|.+|+++|+++.+||..++.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 3568999999999999999999999999999999999999986643
No 48
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.54 E-value=1.5e-07 Score=72.55 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=35.3
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+...+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345789999999999999999999999999999998754
No 49
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=1.5e-07 Score=73.58 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=36.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC-cccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN-YFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~-~~g~~~~ 71 (119)
+.||++|||+|++|+.+|.+|++.|++|+|+|+.+ .+||.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 36999999999999999999999999999999875 3566543
No 50
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.54 E-value=2.4e-07 Score=71.66 Aligned_cols=42 Identities=38% Similarity=0.528 Sum_probs=38.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
+|++|||+|++|+++|.+|++.|.+|+|+|+++.+||..++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 689999999999999999999999999999999888875543
No 51
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.53 E-value=1.8e-07 Score=73.31 Aligned_cols=40 Identities=43% Similarity=0.587 Sum_probs=36.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+||++|||+|++|+.+|..|++.|++|+|+|+ +.+||.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 48999999999999999999999999999999 67788654
No 52
>PRK09126 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-07 Score=72.35 Aligned_cols=35 Identities=40% Similarity=0.567 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 68999999999999999999999999999999864
No 53
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.52 E-value=1.3e-07 Score=72.72 Aligned_cols=32 Identities=38% Similarity=0.685 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
|||+|||+||+|+++|+.|++.|++|+++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 54
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.52 E-value=1.8e-07 Score=73.57 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=36.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
++||++|||+||+|+.+|..+++.|++|+++|+. .+||.+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 3699999999999999999999999999999986 4677643
No 55
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.52 E-value=1.2e-07 Score=72.58 Aligned_cols=37 Identities=35% Similarity=0.438 Sum_probs=34.1
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...++||+|||+|++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3567999999999999999999999999999999875
No 56
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.51 E-value=1.8e-07 Score=71.61 Aligned_cols=39 Identities=38% Similarity=0.475 Sum_probs=35.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
++..||+|||+|++|+++|..|++.|++|+|+|+.+.++
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 356799999999999999999999999999999987654
No 57
>PRK06185 hypothetical protein; Provisional
Probab=98.51 E-value=1.7e-07 Score=72.11 Aligned_cols=38 Identities=37% Similarity=0.407 Sum_probs=34.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+...+||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34679999999999999999999999999999998753
No 58
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.50 E-value=2e-07 Score=73.04 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=36.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+||++|||+||+|+.+|..+++.|++|+|+|+. .+||...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 589999999999999999999999999999985 5777644
No 59
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=2.2e-07 Score=72.98 Aligned_cols=41 Identities=37% Similarity=0.537 Sum_probs=37.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
..||++|||+|++|+.+|..+++.|++|+++|+.. +||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46999999999999999999999999999999887 777643
No 60
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.50 E-value=2.3e-07 Score=72.47 Aligned_cols=41 Identities=34% Similarity=0.549 Sum_probs=36.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc-ccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY-FTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~-~g~~~ 70 (119)
++||++|||+|++|+.+|..+++.|++|+|+|+.+. +||.+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 369999999999999999999999999999999864 56653
No 61
>PRK07121 hypothetical protein; Validated
Probab=98.49 E-value=2.8e-07 Score=73.11 Aligned_cols=43 Identities=35% Similarity=0.492 Sum_probs=38.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+...+||+|||+|.+|+++|+.+++.|.+|+|+||....|++.
T Consensus 17 ~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 17 WDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred cCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 3568999999999999999999999999999999998877654
No 62
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.49 E-value=1.6e-07 Score=73.47 Aligned_cols=39 Identities=46% Similarity=0.642 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
||+|||||++|+.+|..+++.|.+|+|+|+...+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 899999999999999999999999999999999998643
No 63
>PRK08013 oxidoreductase; Provisional
Probab=98.49 E-value=1.8e-07 Score=72.20 Aligned_cols=35 Identities=37% Similarity=0.464 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+||+|||+||+|+++|..|+++|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 58999999999999999999999999999999865
No 64
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.49 E-value=2.7e-07 Score=72.97 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=39.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
....+|+|||+|++|+.+|..|.+.|++++++|+++.+||.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 4468999999999999999999999999999999999998753
No 65
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.48 E-value=1.5e-07 Score=72.40 Aligned_cols=34 Identities=32% Similarity=0.636 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++||+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5799999999999999999999999999999976
No 66
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.48 E-value=3.5e-07 Score=72.98 Aligned_cols=43 Identities=37% Similarity=0.389 Sum_probs=38.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+..++||+|||+|.+|+++|+.+++.|.+|+|+||.+..|++.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 3457899999999999999999999999999999998877653
No 67
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.47 E-value=2.4e-07 Score=70.67 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=34.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+.+||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4689999999999999999999999999999998764
No 68
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.47 E-value=4.4e-07 Score=71.44 Aligned_cols=45 Identities=31% Similarity=0.308 Sum_probs=40.9
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCcccCcee
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTPKDY 71 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~~~~ 71 (119)
+...++||+|||+|++|+++|++|.+.|.. ++++|++..+|+.++
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 346789999999999999999999999998 999999999998754
No 69
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.46 E-value=2.4e-07 Score=71.08 Aligned_cols=34 Identities=41% Similarity=0.644 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999999999999874
No 70
>PRK14694 putative mercuric reductase; Provisional
Probab=98.46 E-value=3.3e-07 Score=72.23 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=37.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+...||++|||+|++|+.+|..|++.|++|+++|++ .+||.+.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 457899999999999999999999999999999986 5676643
No 71
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.45 E-value=3.1e-07 Score=72.16 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=36.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc--ccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY--FTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~--~g~~ 69 (119)
...+||+|||+|++|+++|+.+++.|.+|+|+||... .|++
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 4568999999999999999999999999999999874 4543
No 72
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.45 E-value=3.9e-07 Score=71.73 Aligned_cols=41 Identities=41% Similarity=0.539 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
.+||++|||+|++|+.+|.++++.|.+|+|+|++ .+||.+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 4699999999999999999999999999999986 4566543
No 73
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.45 E-value=6.3e-07 Score=70.55 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=33.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY 65 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~ 65 (119)
..++||+|||+|.+|+++|++|+++ |.+|+|+|++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4568999999999999999999997 899999999764
No 74
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.45 E-value=4e-07 Score=67.64 Aligned_cols=38 Identities=39% Similarity=0.524 Sum_probs=35.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.+++|||+|++|++||+.|+..|++|+|+||+...||+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR 39 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR 39 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccc
Confidence 46999999999999999999999999999999988876
No 75
>PRK06847 hypothetical protein; Provisional
Probab=98.45 E-value=3.2e-07 Score=69.68 Aligned_cols=38 Identities=37% Similarity=0.428 Sum_probs=34.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+..||+|||+|++|+++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 34679999999999999999999999999999998653
No 76
>PRK13748 putative mercuric reductase; Provisional
Probab=98.44 E-value=8.4e-07 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=36.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
..||++|||+|++|+.+|.++++.|++|+|+|++ .+||.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 4699999999999999999999999999999987 6777643
No 77
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.44 E-value=3.5e-07 Score=73.64 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=34.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
...+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34699999999999999999999999999999997643
No 78
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.6e-07 Score=72.40 Aligned_cols=41 Identities=37% Similarity=0.361 Sum_probs=38.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
+|+|+|+|.+|+++|+.|+++|++|+|+|+++..||+..+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 69999999999999999999999999999999999986543
No 79
>PLN02985 squalene monooxygenase
Probab=98.44 E-value=4.7e-07 Score=72.51 Aligned_cols=38 Identities=42% Similarity=0.579 Sum_probs=34.5
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.....+||+|||+|++|+++|..|++.|++|+|+|+..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 34567899999999999999999999999999999874
No 80
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.43 E-value=3.2e-07 Score=71.05 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=32.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+||+|||+||+|+++|+.|+++|++|+++|+....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999999999999999997543
No 81
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.43 E-value=5.6e-07 Score=70.38 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=36.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
+|+|||+|++|+++|+.|.++|++|+|+|+.+.+||..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence 5899999999999999999999999999999999986543
No 82
>PRK06126 hypothetical protein; Provisional
Probab=98.43 E-value=4.1e-07 Score=72.79 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=35.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
|.+..+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 345679999999999999999999999999999999864
No 83
>PLN02697 lycopene epsilon cyclase
Probab=98.43 E-value=4.1e-07 Score=73.13 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=38.7
Q ss_pred CcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 16 GLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+..+..+.+ +....+||+|||+||+|+++|..+++.|++|+++|+...+
T Consensus 94 ~~~~~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 94 KIADKLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred cccccCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 3333333333 3455799999999999999999999999999999986443
No 84
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.43 E-value=2.9e-07 Score=71.01 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
..+||+|||+|++|+++|..|++.|++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4689999999999999999999999999999986
No 85
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.43 E-value=3.7e-07 Score=71.60 Aligned_cols=40 Identities=40% Similarity=0.487 Sum_probs=35.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
..||++|||+|++|+.+|..|++.|++|+++|+ ..+||.+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~ 41 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTC 41 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccce
Confidence 459999999999999999999999999999999 5667654
No 86
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.43 E-value=3.1e-07 Score=69.68 Aligned_cols=34 Identities=41% Similarity=0.491 Sum_probs=32.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
||+|||+|++|+++|..|+++|++|+|+|+.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 7999999999999999999999999999999754
No 87
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.42 E-value=4e-07 Score=70.31 Aligned_cols=37 Identities=43% Similarity=0.616 Sum_probs=33.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
||+|||+|.+|+.+|..++++|.+|+|+||.+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence 8999999999999999999999999999999988874
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.42 E-value=2.9e-06 Score=69.64 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
+||+|||+|++|+++|+.|+++|++|+|+|+...++
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~ 296 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence 699999999999999999999999999999986443
No 89
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.42 E-value=4.5e-07 Score=69.96 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=33.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
+||+|||+|.+|+++|++|++.|.+|+|+|+++.++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 599999999999999999999999999999987543
No 90
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.42 E-value=4.7e-07 Score=71.00 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=37.2
Q ss_pred cEEEECCChHHHHHHHHHHHc------CCcEEEEecCCcccCceeecc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA------GQKVVVIEKGNYFTPKDYSLL 74 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~------g~~v~v~e~~~~~g~~~~~~~ 74 (119)
+|+|||||++|+++|+.|++. |++|+|+|+.+.+||..++..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~ 50 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE 50 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe
Confidence 599999999999999999985 479999999999999876543
No 91
>PRK12831 putative oxidoreductase; Provisional
Probab=98.41 E-value=7.2e-07 Score=70.53 Aligned_cols=41 Identities=29% Similarity=0.251 Sum_probs=36.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
....|++|||+|++|+++|+.|++.|++|+|+|+.+.+||.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCe
Confidence 34578999999999999999999999999999998877764
No 92
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.41 E-value=3.7e-07 Score=70.39 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+||+|||+|++|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 93
>PRK06184 hypothetical protein; Provisional
Probab=98.41 E-value=4e-07 Score=72.24 Aligned_cols=37 Identities=38% Similarity=0.377 Sum_probs=34.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+.+||+|||+||+|+++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999999999999998654
No 94
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.40 E-value=4.5e-07 Score=73.10 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=35.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...||++|||||++|+.+|..+++.|++|+|+|++ .+||.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~ 41 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQ 41 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCce
Confidence 34699999999999999999999999999999986 45554
No 95
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.40 E-value=4.1e-07 Score=69.57 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=33.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
||+|||+|++|+.+|+.|++.|++|+|+|+.+..++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999876554
No 96
>PRK07190 hypothetical protein; Provisional
Probab=98.40 E-value=4.3e-07 Score=72.22 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=34.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+..+||+|||+||+|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 45689999999999999999999999999999998754
No 97
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.40 E-value=1.6e-06 Score=69.35 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=33.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHc-C-CcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA-G-QKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g-~~v~v~e~~~~~g 67 (119)
...+||+|||||+.|+++|+.|++. + .+|+|+|+.+.++
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 3579999999999999999999985 3 6999999986543
No 98
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.40 E-value=5.1e-07 Score=70.94 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=34.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
||++|||+||+|+.+|..+++.|++|+++|+.. +||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 699999999999999999999999999999875 67764
No 99
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-06 Score=65.70 Aligned_cols=38 Identities=39% Similarity=0.460 Sum_probs=31.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~ 68 (119)
+.+|++|||+||+|+++|.++++.+++ ++++|+. ..|+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg 40 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGG 40 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCC
Confidence 468999999999999999999999999 6666654 3443
No 100
>PRK08244 hypothetical protein; Provisional
Probab=98.39 E-value=4.7e-07 Score=71.67 Aligned_cols=36 Identities=42% Similarity=0.469 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+||+|||+||+|+++|..|++.|++|+|+|+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998643
No 101
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.39 E-value=5.7e-07 Score=65.90 Aligned_cols=37 Identities=35% Similarity=0.396 Sum_probs=33.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+|++|||+|++|+.+|..|++.|++|+|+|+++ .|+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~ 37 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ 37 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc
Confidence 689999999999999999999999999999886 4443
No 102
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.38 E-value=5.4e-07 Score=73.69 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=35.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
...+||+|||||+.|.++|+.|+++|++|+|+|+++...|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3569999999999999999999999999999999865433
No 103
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.38 E-value=5.7e-07 Score=71.87 Aligned_cols=42 Identities=31% Similarity=0.504 Sum_probs=37.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
++.++||+|||+| +|+++|+.+++.|.+|+|+||....|++.
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 3458899999999 99999999999999999999998777654
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.38 E-value=4.5e-07 Score=63.21 Aligned_cols=38 Identities=37% Similarity=0.370 Sum_probs=31.1
Q ss_pred EEECCChHHHHHHHHHHHcCCc-EEEEecCCcccCceee
Q 033419 35 VIVGSGCGGGVAAAVLASAGQK-VVVIEKGNYFTPKDYS 72 (119)
Q Consensus 35 ~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~~~g~~~~~ 72 (119)
+|||||++|+++|..|.+.|++ ++++|+++.+|+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 6999999999999999999998 9999999999987654
No 105
>PLN02529 lysine-specific histone demethylase 1
Probab=98.37 E-value=2e-06 Score=71.53 Aligned_cols=46 Identities=39% Similarity=0.403 Sum_probs=41.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeecc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL 74 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~ 74 (119)
....+|+|||+|++|+.+|..|++.|++|+|+|+.+.+||+.++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~ 203 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK 203 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence 3568999999999999999999999999999999999999866543
No 106
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.37 E-value=4.9e-07 Score=69.05 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHc---CCcEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA---GQKVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~ 63 (119)
..+||+|||+|++|+++|+.|++. |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999999999999999999998 9999999995
No 107
>PRK06753 hypothetical protein; Provisional
Probab=98.37 E-value=5.5e-07 Score=68.46 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
+|+|||||++|+++|..|+++|++|+|+|+.+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 79999999999999999999999999999987543
No 108
>PLN02676 polyamine oxidase
Probab=98.36 E-value=2e-06 Score=68.48 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=38.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCceee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~~ 72 (119)
..+||+|||+|++|+++|+.|++.|. +|+|+|+++.+||...+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 46899999999999999999999998 69999999999987543
No 109
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.36 E-value=4.6e-07 Score=66.95 Aligned_cols=36 Identities=50% Similarity=0.840 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g 67 (119)
||++|||+|.+|..+|.+|++.+ .+|+|+|++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 79999999999999999999987 6999999997644
No 110
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.35 E-value=5.6e-07 Score=68.53 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~ 66 (119)
||+|||+|++|+++|..|++.| ++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 7999999999999999999999 999999998643
No 111
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.35 E-value=5.9e-07 Score=69.16 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.+||+|||||++|+.+|..|++.|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999999999997
No 112
>PRK07236 hypothetical protein; Provisional
Probab=98.35 E-value=7.1e-07 Score=68.48 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999999863
No 113
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.35 E-value=6.7e-07 Score=68.81 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+||+|||+|++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57899999999999999999999999999999864
No 114
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.35 E-value=8.4e-07 Score=71.40 Aligned_cols=42 Identities=38% Similarity=0.645 Sum_probs=37.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC--cccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN--YFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~--~~g~~~ 70 (119)
...+||+|||+|.+|+.+|..+++.|.+|+|+||.+ ..|++.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 467899999999999999999999999999999998 566653
No 115
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=7.7e-07 Score=70.33 Aligned_cols=34 Identities=47% Similarity=0.601 Sum_probs=32.1
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
...||++|||+|++|+.+|..+++.|.+|+++|+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3469999999999999999999999999999998
No 116
>PRK02106 choline dehydrogenase; Validated
Probab=98.34 E-value=6.5e-07 Score=72.11 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=35.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY 65 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~ 65 (119)
|+...||++|||+|.+|+.+|.+|++ .|++|+|+|++..
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34567999999999999999999999 8999999999954
No 117
>PTZ00058 glutathione reductase; Provisional
Probab=98.34 E-value=1.2e-06 Score=70.90 Aligned_cols=42 Identities=31% Similarity=0.519 Sum_probs=37.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
...||++|||+|++|+.+|..+++.|.+|+++|+. .+||.+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 36799999999999999999999999999999986 5777643
No 118
>PRK11445 putative oxidoreductase; Provisional
Probab=98.33 E-value=9.1e-07 Score=67.30 Aligned_cols=34 Identities=38% Similarity=0.545 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
+||+|||+||+|+++|..|++. ++|+++|+.+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 7999999999999999999999 999999998743
No 119
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.33 E-value=9e-07 Score=71.58 Aligned_cols=42 Identities=40% Similarity=0.662 Sum_probs=38.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
...+||+|||+|++|+++|+.++++|.+|+|+||....|++.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 357899999999999999999999999999999998887764
No 120
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.33 E-value=2.4e-06 Score=67.40 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=52.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhH
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQ 100 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~ 100 (119)
...+|+|||||.+|+++|.+|-+.|. .++|+|..+.+||+.+++.-..+. +.-+.-|-.+..-||...+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~-ielGAqwihG~~gNpVY~la 90 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGV-IELGAQWIHGEEGNPVYELA 90 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCe-EeecceeecCCCCChHHHHH
Confidence 45689999999999999999997766 799999999999998876655553 22333344445567766543
No 121
>PRK07538 hypothetical protein; Provisional
Probab=98.32 E-value=9.4e-07 Score=68.42 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
||+|||||++|+++|..|+++|++|+|+|+.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 79999999999999999999999999999987543
No 122
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.32 E-value=9.3e-07 Score=68.95 Aligned_cols=37 Identities=43% Similarity=0.513 Sum_probs=34.6
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcccCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFTPK 69 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g~~ 69 (119)
||+|||+|.+|+++|+.++++| .+|+|+||.+..|++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc
Confidence 7999999999999999999999 999999999887765
No 123
>PRK14727 putative mercuric reductase; Provisional
Probab=98.32 E-value=1.3e-06 Score=69.21 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=39.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
..++|++|||+|++|+.+|..+++.|.+|+++|+...+||.+..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 35799999999999999999999999999999998778887543
No 124
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.32 E-value=1.1e-06 Score=70.05 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=31.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
...||++|||+||+|+.+|..+++.|.+|+|+|+
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3468999999999999999999999999999996
No 125
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.31 E-value=1.4e-06 Score=74.49 Aligned_cols=40 Identities=33% Similarity=0.337 Sum_probs=36.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+||||||+|+++|+.|++.|++|+|+|+.+.+||.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence 4579999999999999999999999999999998877765
No 126
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.31 E-value=1.3e-06 Score=69.01 Aligned_cols=45 Identities=36% Similarity=0.466 Sum_probs=39.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
...||++|||+|++|..+|.++++.|.+|.++|+...+||.+...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 468999999999999999999999999999999997788765443
No 127
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.31 E-value=7.9e-07 Score=68.16 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~ 65 (119)
.+||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 379999999999999999999985 99999999764
No 128
>PRK06834 hypothetical protein; Provisional
Probab=98.30 E-value=9.8e-07 Score=70.17 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.++||+|||+||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 358999999999999999999999999999999764
No 129
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.30 E-value=7.9e-07 Score=69.52 Aligned_cols=32 Identities=41% Similarity=0.488 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~ 63 (119)
|||+|||||++|+++|+.|++ +|++|+|+|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 699999999999999999998 79999999994
No 130
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.30 E-value=1.5e-06 Score=69.92 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=38.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
++...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4566899999999999999999999999999999999876654
No 131
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.30 E-value=1.2e-06 Score=70.67 Aligned_cols=43 Identities=40% Similarity=0.492 Sum_probs=38.7
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
|++..+||+|||+|++|+++|..+++.|.+|+|+||....|++
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 4566899999999999999999999999999999998877664
No 132
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.30 E-value=1.4e-06 Score=70.75 Aligned_cols=43 Identities=37% Similarity=0.543 Sum_probs=38.8
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.+..++||+|||+|.+|+.+|+.+++.|.+|+|+||....|++
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3456899999999999999999999999999999999877764
No 133
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=8.8e-07 Score=67.80 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999986
No 134
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.29 E-value=2.4e-06 Score=70.16 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+|++|+++|..|++.|++|+|+|+.+.+||.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 4568999999999999999999999999999998877653
No 135
>PLN02507 glutathione reductase
Probab=98.28 E-value=1.4e-06 Score=69.53 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=32.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
..+||++|||+|++|+.+|.++++.|.+|+++|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4579999999999999999999999999999996
No 136
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.28 E-value=2.6e-06 Score=67.21 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=37.4
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCceeec
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~~~ 73 (119)
.++|||||++||++||+|++.+ +.++|+|+.+..||...+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~ 44 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV 44 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEE
Confidence 4899999999999999999999 8999999999999876554
No 137
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.28 E-value=2.1e-06 Score=73.12 Aligned_cols=40 Identities=33% Similarity=0.355 Sum_probs=36.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+||+|+++|+.|+++|++|+|+|+.+.+||.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~ 344 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV 344 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence 3578999999999999999999999999999999877753
No 138
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.27 E-value=2.1e-06 Score=67.32 Aligned_cols=47 Identities=30% Similarity=0.379 Sum_probs=42.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeeccC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLE 75 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~ 75 (119)
.+..||+|+|+|.+|+.+|+.|.+.|++|+|+|.++.+||+..+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence 46789999999999999999999999999999999999998766544
No 139
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.27 E-value=1.6e-06 Score=69.61 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=34.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
..+||+|||+|++|+++|..|++.|++|+|+|+.+..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 5789999999999999999999999999999998754
No 140
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.27 E-value=1.5e-06 Score=69.63 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=35.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
...+||+|||+|++|+.+|..|++.|++|+|+|+.+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999987543
No 141
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.27 E-value=5.6e-06 Score=65.91 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=32.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g 67 (119)
+||+|||||++|+++|+.|++. |.+|+|+|+...++
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 5999999999999999999986 99999999976544
No 142
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.27 E-value=1.9e-06 Score=69.81 Aligned_cols=45 Identities=31% Similarity=0.472 Sum_probs=39.6
Q ss_pred cccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
......++||+|||+| +|+.+|..+++.|.+|+|+||.+.+||+.
T Consensus 10 ~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 10 TPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred CCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 3345668999999999 89999999999999999999998888864
No 143
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.26 E-value=1.6e-06 Score=66.70 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK 69 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~ 69 (119)
|++|||+|++|+++|+.|++. |++|+++|+.+..+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999998877764
No 144
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.25 E-value=2.6e-06 Score=67.42 Aligned_cols=40 Identities=40% Similarity=0.459 Sum_probs=36.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+++|||+|++|+.+|..|++.|++|+++|+.+.+|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL 181 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCce
Confidence 4569999999999999999999999999999998877653
No 145
>PRK07588 hypothetical protein; Provisional
Probab=98.25 E-value=2e-06 Score=66.01 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=31.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 7999999999999999999999999999998654
No 146
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.25 E-value=1.3e-06 Score=71.25 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC-ccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN-YFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~-~~g 67 (119)
...|||+|||||++|+.+|+.+++.|.+|+++|+.. .+|
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG 41 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 41 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence 346999999999999999999999999999999873 444
No 147
>PLN02612 phytoene desaturase
Probab=98.25 E-value=4e-06 Score=67.87 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=38.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
....+|+|||+|++|+++|++|.++|++|+++|+.+.+||...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 3457899999999999999999999999999999988887643
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=1.7e-06 Score=69.79 Aligned_cols=41 Identities=37% Similarity=0.495 Sum_probs=37.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+.++||+|||+|.+|+++|..+++.|.+|+|+|+....|++
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 45789999999999999999999999999999998877765
No 149
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=2e-06 Score=69.93 Aligned_cols=43 Identities=40% Similarity=0.395 Sum_probs=37.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+....+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 3456789999999999999999999999999999998765554
No 150
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.25 E-value=1.8e-06 Score=69.91 Aligned_cols=41 Identities=41% Similarity=0.488 Sum_probs=36.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 35789999999999999999999999999999998765554
No 151
>PRK05868 hypothetical protein; Validated
Probab=98.24 E-value=1.9e-06 Score=66.14 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
||+|||+|++|+++|..|+++|++|+|+|+.+...
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~ 37 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR 37 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Confidence 79999999999999999999999999999987543
No 152
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.24 E-value=1.6e-06 Score=66.73 Aligned_cols=34 Identities=38% Similarity=0.461 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHH--HHcCCcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVL--ASAGQKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l--~~~g~~v~v~e~~~~~ 66 (119)
||+|||+|++|+++|++| ++.|++|+++|+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7789999999998765
No 153
>PRK12839 hypothetical protein; Provisional
Probab=98.24 E-value=2e-06 Score=69.72 Aligned_cols=44 Identities=41% Similarity=0.505 Sum_probs=39.5
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+++..+||+|||+|.+|+++|+.++++|.+|+|+|+...+|++.
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 34568999999999999999999999999999999998877764
No 154
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.24 E-value=2e-06 Score=66.30 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=32.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+|+|||||++|+++|..|+++|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 57999999999999999999999999999998754
No 155
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=2.1e-06 Score=69.48 Aligned_cols=43 Identities=37% Similarity=0.414 Sum_probs=37.7
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcC---CcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~~~g~~ 69 (119)
|+...+||+|||+|.+|+.+|..+++.| .+|+|+||....+++
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 3456789999999999999999999998 899999999876654
No 156
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.23 E-value=2.9e-06 Score=67.23 Aligned_cols=40 Identities=35% Similarity=0.430 Sum_probs=36.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
+++|||+|++|+++|+.|+++|++|+|+|+.+.+||...+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 4899999999999999999999999999999999886444
No 157
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.23 E-value=2.2e-06 Score=68.28 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=36.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHc-CCcEEEEecC--------CcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKG--------NYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~--------~~~g~~~~ 71 (119)
.+||++|||+|++|..+|..+++. |.+|+++|+. ..+||.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 469999999999999999999997 9999999974 35777643
No 158
>PLN02815 L-aspartate oxidase
Probab=98.22 E-value=2e-06 Score=70.04 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=37.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.....+||+|||+|.+|+.+|..+++.| +|+|+||....+++
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4456799999999999999999999999 99999999887764
No 159
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.22 E-value=4.9e-06 Score=69.79 Aligned_cols=43 Identities=40% Similarity=0.396 Sum_probs=39.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
...+|+|||+|++|+.+|+.|.++|++|+|+|+...+||+.++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 4689999999999999999999999999999999999987443
No 160
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.21 E-value=2.1e-06 Score=66.13 Aligned_cols=35 Identities=40% Similarity=0.472 Sum_probs=32.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
||+|||||.+|+++|+.|+++|.+|+|+|+....+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~ 36 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA 36 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh
Confidence 79999999999999999999999999999985443
No 161
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.21 E-value=2.9e-06 Score=69.89 Aligned_cols=37 Identities=38% Similarity=0.453 Sum_probs=34.2
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+.+..+|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3567899999999999999999999999999999975
No 162
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.21 E-value=2.3e-06 Score=69.91 Aligned_cols=41 Identities=32% Similarity=0.267 Sum_probs=37.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..++||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 45789999999999999999999999999999998876654
No 163
>PRK10262 thioredoxin reductase; Provisional
Probab=98.21 E-value=2.5e-06 Score=63.91 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=34.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+..+|++|||+|++|+.+|..+++.|++++++|+. ..|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~ 43 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQ 43 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCc
Confidence 46789999999999999999999999999999965 44554
No 164
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2.8e-06 Score=69.56 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=36.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 45789999999999999999999999999999998765543
No 165
>PRK06996 hypothetical protein; Provisional
Probab=98.20 E-value=1.8e-06 Score=66.55 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=33.7
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcC----CcEEEEecCC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAG----QKVVVIEKGN 64 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g----~~v~v~e~~~ 64 (119)
|....+||+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 5557799999999999999999999986 4799999975
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.20 E-value=6.4e-06 Score=65.87 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=34.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
...+|++|||||++|+++|.++++.|+++++++.. +||..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~ 248 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQV 248 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCee
Confidence 34799999999999999999999999999999864 56653
No 167
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.19 E-value=1e-05 Score=63.61 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=37.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~g~~~~ 71 (119)
+.+||+|||||+.|+++|+.|++.. ++|+|+||...++....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS 45 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS 45 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence 4689999999999999999999987 99999999988875433
No 168
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.18 E-value=3e-06 Score=65.54 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~g 67 (119)
+|+|||||++|+++|..|++.| ++|+|+|+.+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999988 6999999987654
No 169
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.18 E-value=4.7e-06 Score=71.48 Aligned_cols=40 Identities=35% Similarity=0.248 Sum_probs=36.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+||+|+++|..|+++|++|+|+|+.+.+||.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence 3568999999999999999999999999999998877653
No 170
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.18 E-value=2.9e-06 Score=72.54 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=37.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
..+||+|||+||+|+++|..+++.|++|+|+|+.+..||..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~ 202 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSL 202 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCee
Confidence 46899999999999999999999999999999998887754
No 171
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=2.9e-06 Score=69.11 Aligned_cols=41 Identities=37% Similarity=0.349 Sum_probs=36.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 35689999999999999999999999999999998765544
No 172
>PTZ00367 squalene epoxidase; Provisional
Probab=98.17 E-value=2.4e-06 Score=69.24 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=33.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 357899999999999999999999999999999875
No 173
>PLN03000 amine oxidase
Probab=98.17 E-value=8e-06 Score=68.92 Aligned_cols=45 Identities=38% Similarity=0.378 Sum_probs=41.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeecc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLL 74 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~ 74 (119)
...+|+|||+|++|+.+|..|.+.|++|+|+|+.+.+||+.++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~ 227 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK 227 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence 468999999999999999999999999999999999999876553
No 174
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.17 E-value=3e-06 Score=68.50 Aligned_cols=42 Identities=33% Similarity=0.420 Sum_probs=36.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+..+||+|||+|.+|+.+|..++ .|.+|+|+||....+++
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 3467899999999999999999986 49999999999876654
No 175
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.17 E-value=2.5e-06 Score=68.08 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.2
Q ss_pred cccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g 67 (119)
..++||+|||||+.|+++|+.|++ .+.+|+|+||....+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 456899999999999999999998 478999999987554
No 176
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.17 E-value=2.8e-06 Score=69.60 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=34.1
Q ss_pred ccccccEEEECCChHHHHHHHHHHH-cCCcEEEEecCCc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLAS-AGQKVVVIEKGNY 65 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~-~g~~v~v~e~~~~ 65 (119)
+...+||+||||||+|+.+|..|++ .|++|+|+|+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 3457899999999999999999999 5999999999864
No 177
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.16 E-value=3.5e-06 Score=69.10 Aligned_cols=40 Identities=30% Similarity=0.254 Sum_probs=36.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 5689999999999999999999999999999998766654
No 178
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.16 E-value=3.1e-06 Score=69.68 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
....+||+|||+|.+|+.+|..++++|++|+|+|+....++
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 2 KIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred CceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 34678999999999999999999999999999999876544
No 179
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=3.2e-06 Score=68.75 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=35.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999999876554
No 180
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.16 E-value=5.1e-06 Score=65.36 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=36.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
....+++|||+|++|+.+|..|++.|++|+++|+.+.+|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~ 178 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL 178 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcE
Confidence 34578999999999999999999999999999998876653
No 181
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=3.6e-06 Score=69.07 Aligned_cols=39 Identities=38% Similarity=0.457 Sum_probs=35.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
...+||+|||+|.+|+.+|..+++.|.+|+|+|+....+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 357899999999999999999999999999999876554
No 182
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.16 E-value=3.1e-06 Score=66.42 Aligned_cols=39 Identities=33% Similarity=0.473 Sum_probs=34.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+||+|||+|.+|+.+|..++ .|.+|+|+||....+++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 5689999999999999999975 69999999999877665
No 183
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=3.4e-06 Score=66.66 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
....+++|||+|++||.+|..|.+.|+.++++||.+.+||-+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceE
Confidence 346789999999999999999999999999999999999864
No 184
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.15 E-value=4.6e-06 Score=67.66 Aligned_cols=43 Identities=40% Similarity=0.600 Sum_probs=38.6
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.+...+||+|||+|.+|+.+|..++++|++|+|+|+....|++
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 3456899999999999999999999999999999998877765
No 185
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.15 E-value=3.8e-06 Score=67.46 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=37.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|++|||||+.|+.+|..++.+|++|+++|+++...|.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 37899999999999999999999999999999999875543
No 186
>PLN02546 glutathione reductase
Probab=98.14 E-value=3.8e-06 Score=67.96 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
.+||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 469999999999999999999999999999996
No 187
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.14 E-value=6.9e-06 Score=66.57 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=37.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~~ 71 (119)
...+++|||+|++||++|.+|.+. |.+|+|+|+.+..||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 356899999999999999999984 689999999999998754
No 188
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.14 E-value=5.2e-06 Score=67.31 Aligned_cols=44 Identities=32% Similarity=0.548 Sum_probs=39.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
.++.++|++|||+|.+|+.+|..++++|++|+|+|+....|+..
T Consensus 12 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 12 RWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 45568899999999999999999999999999999988777754
No 189
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.13 E-value=9.5e-06 Score=63.87 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=36.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
....+++|||+|++|+.+|..|++.|++|+|+|+.+.+|+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcE
Confidence 34679999999999999999999999999999998776653
No 190
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.13 E-value=5.1e-06 Score=68.44 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=36.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecC-CcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG-NYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~-~~~g~~~~ 71 (119)
+||++|||+|++|..+|..+++.|++|+++|+. ..+||.+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 799999999999999999999999999999975 35777644
No 191
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=7.5e-06 Score=67.13 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=44.0
Q ss_pred HHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 6 STIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
+.|.+...+.++...... ......+|+|||+|++|+++|+.|++.|++|+++|+.+.+||
T Consensus 288 r~~~d~~~~~~~~~~~~~---~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 288 RYITDTALAMGWRPDVSK---VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred HHHHHHHHHhCCCCCCCc---ccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 445554444555433221 112357899999999999999999999999999999987765
No 192
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.13 E-value=4.2e-06 Score=67.48 Aligned_cols=37 Identities=43% Similarity=0.421 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 7999999999999999999999999999998765554
No 193
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.12 E-value=3.6e-06 Score=66.85 Aligned_cols=41 Identities=32% Similarity=0.424 Sum_probs=37.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
..-+++|||||++|+.+|..|++.|++|.++|+++.+||+-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 34579999999999999999999999999999999999873
No 194
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.11 E-value=4.7e-06 Score=67.74 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+||+|||+|.+|+.+|..+++.|.+|+|+||....+++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998766554
No 195
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.10 E-value=5.1e-06 Score=65.33 Aligned_cols=35 Identities=31% Similarity=0.296 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 48999999999999999999999999999976544
No 196
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.10 E-value=1.3e-05 Score=63.52 Aligned_cols=39 Identities=31% Similarity=0.426 Sum_probs=35.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
...+++|||+|++|+.+|..|++.|++|+++|+.+.+||
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 456899999999999999999999999999999887664
No 197
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.09 E-value=6.7e-06 Score=65.69 Aligned_cols=40 Identities=30% Similarity=0.237 Sum_probs=35.7
Q ss_pred ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+||+|+.+|..|++ .|++|+|+|+.+.+||.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 45689999999999999999987 79999999999887764
No 198
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.09 E-value=5e-06 Score=71.08 Aligned_cols=40 Identities=33% Similarity=0.392 Sum_probs=36.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+|++|+++|+.|+++|++|+|+|+.+.+||.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV 577 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc
Confidence 4568999999999999999999999999999998877765
No 199
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.09 E-value=5e-06 Score=57.69 Aligned_cols=33 Identities=52% Similarity=0.639 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
|++|||+|++|+.+|..|++.+++++++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999987654
No 200
>PLN02487 zeta-carotene desaturase
Probab=98.08 E-value=1.7e-05 Score=64.49 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=37.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
...+++|||+|++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 346899999999999999999999999999999999887543
No 201
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.07 E-value=8.6e-06 Score=70.82 Aligned_cols=42 Identities=31% Similarity=0.484 Sum_probs=38.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+..+||+|||+|.+|+.+|..+++.|.+|+|+||....||+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 467999999999999999999999999999999998877753
No 202
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.07 E-value=5.9e-06 Score=68.83 Aligned_cols=40 Identities=30% Similarity=0.237 Sum_probs=36.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+|++|+++|..|+++|++|+|+|+.+.+||.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 4568999999999999999999999999999998776654
No 203
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=6.8e-06 Score=66.72 Aligned_cols=40 Identities=30% Similarity=0.292 Sum_probs=34.7
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
+...+||+|||+|.+|+.+|+.+++. .+|+|+||....++
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 34578999999999999999999876 89999999876554
No 204
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.05 E-value=6e-06 Score=66.90 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~ 69 (119)
..+||+|||+|.+|+.+|+.+++. |.+|+|+||....+++
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 357999999999999999999976 4899999998765553
No 205
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.05 E-value=7e-06 Score=65.20 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=34.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
++||+|||+|.+|+.+|..+++.|. |+|+||....+++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 5799999999999999999999998 9999999766654
No 206
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.05 E-value=8.3e-06 Score=64.86 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 207
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.05 E-value=2.7e-05 Score=62.33 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=34.4
Q ss_pred cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT 67 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g 67 (119)
+..+||+|||||++|+++|+.|++. +.+|+|+|+.+.++
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 4568999999999999999999987 89999999955555
No 208
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.04 E-value=8.4e-06 Score=63.38 Aligned_cols=39 Identities=36% Similarity=0.372 Sum_probs=35.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+|+|||||++|+++|..|+++|++|+|+|+...+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 457999999999999999999999999999998766554
No 209
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=61.60 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=35.0
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+....|++|||+|..|+++|+.|+++|.+++++|+-+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCC
Confidence 45678999999999999999999999999999999764
No 210
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.03 E-value=6.9e-06 Score=66.16 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=33.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+|+|||||++|+.++..|.+.|++++++|+.+.+||.++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 699999999999999999999999999999999999764
No 211
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.03 E-value=8.4e-06 Score=65.18 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=34.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
...+|++|||||++|+++|..+++.|++|+++|. .+||..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence 4579999999999999999999999999999974 355543
No 212
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.02 E-value=1.3e-05 Score=62.23 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=32.3
Q ss_pred EEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 35 VIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 35 ~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+|||+|++|+.+|..++++|++|+|+|+.+.+|++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k 35 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKK 35 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccc
Confidence 59999999999999999999999999999887754
No 213
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.01 E-value=8.9e-06 Score=65.70 Aligned_cols=37 Identities=38% Similarity=0.382 Sum_probs=34.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
+||+|||+|++|+.+|+.|+++|++|+++|++...++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999987764
No 214
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.01 E-value=8.8e-06 Score=66.44 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=34.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT 67 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g 67 (119)
..+||+|||+|.+|+.+|..+++. |.+|+|+||....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 468999999999999999999998 99999999987543
No 215
>PRK08275 putative oxidoreductase; Provisional
Probab=98.00 E-value=9.8e-06 Score=65.36 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYF 66 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~ 66 (119)
..+||+|||+|.+|+.+|..+++. |.+|+|+||....
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 568999999999999999999876 7899999998764
No 216
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.00 E-value=9.9e-06 Score=63.78 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=32.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
.||+|||||++|+.+|+.|++.|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999876543
No 217
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.99 E-value=9.7e-06 Score=65.85 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=35.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~ 69 (119)
+..+||+|||+|.+|+.+|..+++. |.+|+|+||....+++
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 3468999999999999999999876 5799999999766654
No 218
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.98 E-value=8.4e-06 Score=65.78 Aligned_cols=37 Identities=51% Similarity=0.750 Sum_probs=34.6
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+..++|++|||+|.+|..+|.+|+..|++|+++|++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4678999999999999999999999999999999984
No 219
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.97 E-value=1.2e-05 Score=63.52 Aligned_cols=34 Identities=41% Similarity=0.455 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.||+|||+|.+|+.+|..+++.|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999853
No 220
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.97 E-value=1.3e-05 Score=64.43 Aligned_cols=40 Identities=38% Similarity=0.576 Sum_probs=35.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+||+|||+|.+|+.+|..+++. .+|+|+||....+++
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 4568999999999999999999886 899999999876654
No 221
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.96 E-value=1.3e-05 Score=65.90 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=36.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+++|||+|++|+.+|+.|++.|++|+++|+.+.+||.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM 231 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3468999999999999999999999999999998877764
No 222
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.96 E-value=1.2e-05 Score=65.27 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=35.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~ 69 (119)
.++||+|||+|.+|+.+|..+++. |.+|+|+||....+++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 368999999999999999999876 6899999999776654
No 223
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.95 E-value=1.3e-05 Score=64.12 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=34.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.+||+|||+|.+|+.+|..+++ |.+|+|+||....+++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 6799999999999999999876 8999999999876664
No 224
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.95 E-value=1.5e-05 Score=64.61 Aligned_cols=43 Identities=33% Similarity=0.338 Sum_probs=38.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
++...+||+|||+|.+|+.+|..++++|++|+|+||....++.
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 3456899999999999999999999999999999999877743
No 225
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.95 E-value=1.1e-05 Score=62.64 Aligned_cols=37 Identities=41% Similarity=0.582 Sum_probs=34.1
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
+.+..+|++|||+|.+|.+.|+.|++.|.+|.|+||.
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4456789999999999999999999999999999986
No 226
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=1.4e-05 Score=64.34 Aligned_cols=36 Identities=39% Similarity=0.633 Sum_probs=32.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
...+||+|||+|.+|+.+|..+ +.|.+|+|+||...
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 3568999999999999999999 88999999999864
No 227
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=3.5e-05 Score=62.23 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=35.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+|+|||+|++|+.+|+.|++.|++|+++|+.+.+||.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~ 175 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM 175 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 3457999999999999999999999999999998877653
No 228
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.94 E-value=1.5e-05 Score=62.57 Aligned_cols=34 Identities=41% Similarity=0.691 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+|++|||+|++|+.+|..++++|++|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999864
No 229
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.92 E-value=2.8e-05 Score=59.78 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=39.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC--cccCceeecc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN--YFTPKDYSLL 74 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~--~~g~~~~~~~ 74 (119)
...+|++|||+|.+|+.+|..++.+|.+|+++|++. .+|+..+.++
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSf 50 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSF 50 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeec
Confidence 457899999999999999999999999999998864 4677665543
No 230
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.92 E-value=3.5e-05 Score=61.35 Aligned_cols=38 Identities=37% Similarity=0.428 Sum_probs=34.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
..+++|||+|++|+.+|..|++.|++|+++|+.+.+|+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 46899999999999999999999999999999876654
No 231
>PLN02976 amine oxidase
Probab=97.90 E-value=3.2e-05 Score=68.27 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=39.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
..+++|||+|++|+.+|+.|.+.|++|+|+|+.+.+||..+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999876553
No 232
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.89 E-value=1.5e-05 Score=62.70 Aligned_cols=41 Identities=37% Similarity=0.400 Sum_probs=35.0
Q ss_pred ccccEEEECCChHHHHHHHHHHH------cCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLAS------AGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~------~g~~v~v~e~~~~~g~~~ 70 (119)
..+||+|||+||+|+++|.+|.+ +.++|.|+|+...+|+..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 56899999999999999998843 256899999999888753
No 233
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.88 E-value=2e-05 Score=60.17 Aligned_cols=35 Identities=29% Similarity=0.638 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+.+||+|||||.+|+.|+.++.++|.++.++.++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 36899999999999999999999999999998765
No 234
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=2.2e-05 Score=61.78 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
+++|||+|++|+.+|.++++.|.+|+++|++. +||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccC
Confidence 69999999999999999999999999999875 56553
No 235
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.87 E-value=1.8e-05 Score=61.55 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEE-ecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVI-EKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~-e~~~~~g 67 (119)
||+|||||++|+.+|+.+++.|.+|+++ .+.+.++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~ 36 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG 36 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc
Confidence 7999999999999999999999999999 4444443
No 236
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.86 E-value=4.2e-05 Score=46.28 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
.++|||+|..|+..|..+++.|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 47999999999999999999999999999988765
No 237
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=3.5e-05 Score=61.15 Aligned_cols=37 Identities=32% Similarity=0.379 Sum_probs=35.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
-+|+|||+||+|+.+|..|++.|+.|+++|+.+..||
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 7899999999999999999999999999999998875
No 238
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.86 E-value=2.4e-05 Score=66.75 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=33.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
...+|+|||+||+|+++|+.|++.|++|+++|+.+..|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccc
Confidence 45689999999999999999999999999999875433
No 239
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.85 E-value=1.8e-05 Score=63.46 Aligned_cols=33 Identities=36% Similarity=0.610 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~ 65 (119)
|++|||+|.+|+.+|.+|++.+ ++|+|+|++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999988 69999999864
No 240
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.84 E-value=2.5e-05 Score=66.35 Aligned_cols=39 Identities=33% Similarity=0.710 Sum_probs=35.3
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.....+||+|||+|.+|+.+|..+++.|.+|+|+||...
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 345679999999999999999999999999999999875
No 241
>PLN02785 Protein HOTHEAD
Probab=97.82 E-value=3.2e-05 Score=62.99 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=32.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
...||++|||+|.+|+.+|.+|++ +.+|+|+|++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 356999999999999999999999 699999999863
No 242
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.81 E-value=2.1e-05 Score=59.12 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=55.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcC------CcEEEEecCCcccCceeeccCCCceEEecCccccCCCcCCchhhhHHHH
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAG------QKVVVIEKGNYFTPKDYSLLEAEGLYVCDASVFPSAVGVNPMITIQSTA 103 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g------~~v~v~e~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~a 103 (119)
...+++|+|||+.|..+||.|++.+ ..++++|+....++.... +.+++.....-.+.-.+..++
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGk----------asgfLa~wc~~s~~~~La~ls 78 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGK----------ASGFLAKWCQPSIIQPLATLS 78 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccc----------cchhhHhhhCCcccchhhHHH
Confidence 4468999999999999999999987 789999998877654211 111111111112234567778
Q ss_pred HHHHHHHHHHHhhhcC
Q 033419 104 YCLSKRIAESLREQSS 119 (119)
Q Consensus 104 ~~~~~~l~~~l~~~~~ 119 (119)
..+.++|.+++...+|
T Consensus 79 fkLh~~LsdeydGvnn 94 (380)
T KOG2852|consen 79 FKLHEELSDEYDGVNN 94 (380)
T ss_pred HHHHHHHHHhhcCccc
Confidence 8888888888766554
No 243
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.80 E-value=3.9e-05 Score=59.68 Aligned_cols=41 Identities=37% Similarity=0.427 Sum_probs=38.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
..+|++|||+||.|..+|.+.++.|++..++|++...||..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTc 78 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTC 78 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCcee
Confidence 57999999999999999999999999999999998888864
No 244
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.79 E-value=6.9e-05 Score=58.80 Aligned_cols=44 Identities=30% Similarity=0.234 Sum_probs=37.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcE--EEEecCCcccCceee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKV--VVIEKGNYFTPKDYS 72 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v--~v~e~~~~~g~~~~~ 72 (119)
....+++|+|||++|+++||+|++++.++ +++|+.+..||..++
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 34568999999999999999999988765 569999999997766
No 245
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.78 E-value=5e-05 Score=57.79 Aligned_cols=40 Identities=33% Similarity=0.248 Sum_probs=35.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+++|||+|++|+.+|..|++.|++++++|+.+.+++.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~ 56 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGL 56 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCce
Confidence 3458999999999999999999999999999998877653
No 246
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.78 E-value=3.8e-05 Score=62.93 Aligned_cols=34 Identities=44% Similarity=0.611 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLA----SAGQKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~----~~g~~v~v~e~~~~~ 66 (119)
||+|||+|.+|+.+|..++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999998763
No 247
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.77 E-value=4.1e-05 Score=58.90 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=37.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
...+|+|||+|++|+++|+.|++ ..+|+++|.+...||...+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCcccee
Confidence 35689999999999999999987 57999999999999886665
No 248
>PRK13984 putative oxidoreductase; Provisional
Probab=97.77 E-value=9.7e-05 Score=60.11 Aligned_cols=40 Identities=38% Similarity=0.279 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...+++|||+|++|+.+|..|++.|++|+++|+.+..||.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV 321 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 4568999999999999999999999999999998877653
No 249
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.77 E-value=7e-05 Score=64.78 Aligned_cols=65 Identities=25% Similarity=0.346 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHhHcCcccccCCccccccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccC
Q 033419 1 MYETDSTIVQSLTQKGLQVTKDSKQNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTP 68 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~ 68 (119)
||+....|++..=++|+=+...+. ...-.+|.|||+||+|+.+|-+|.+.|+.|+++|+.+..||
T Consensus 1758 iksie~aiid~af~egwm~p~pp~---~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1758 IKSIECAIIDKAFEEGWMKPCPPA---FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccchhhHHHHHHHHhcCCccCCcc---cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 566777888888888875554433 34567899999999999999999999999999999998885
No 250
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.76 E-value=5.2e-05 Score=59.91 Aligned_cols=37 Identities=41% Similarity=0.554 Sum_probs=33.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
|++|||+|++|+.+|..+++.|.+|+++|+.. +||.+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c 39 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAA 39 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcc
Confidence 79999999999999999999999999999875 56654
No 251
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.76 E-value=6.5e-05 Score=60.11 Aligned_cols=40 Identities=23% Similarity=0.069 Sum_probs=34.9
Q ss_pred ccccEEEECCChHHHHHHHHHH-HcCCcEEEEecCCcccCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~~~g~~ 69 (119)
....|+|||+||+|+.+|..|. +.|++|.|+|+.+.+||.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 4568999999999999999764 679999999999988875
No 252
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.73 E-value=3.9e-05 Score=64.18 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~ 65 (119)
+|+|||+|++|+.+|..|++. |++|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999875
No 253
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.71 E-value=5.2e-05 Score=60.76 Aligned_cols=36 Identities=36% Similarity=0.389 Sum_probs=31.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+..+||+|||+|.+|+.+|..++ +.+|+|+||...
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 356799999999999999999886 579999999876
No 254
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.70 E-value=6.3e-05 Score=59.26 Aligned_cols=38 Identities=26% Similarity=0.583 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+||++|||+|++|..+|.. +.|.+|+++|++ .+||.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeee
Confidence 5899999999999888654 469999999985 4676544
No 255
>PRK07846 mycothione reductase; Reviewed
Probab=97.69 E-value=6e-05 Score=59.42 Aligned_cols=38 Identities=26% Similarity=0.567 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
+||++|||+|++|..+|.+ +.|.+|+++|++ .+||.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 3899999999999988865 469999999985 4666543
No 256
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.62 E-value=9.1e-05 Score=58.19 Aligned_cols=33 Identities=42% Similarity=0.661 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+|++|||+|++|+.+|+.++++|++|+++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999875
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.61 E-value=7.4e-05 Score=61.05 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=31.1
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
|+|||+|.+|+.+|..+++.|.+|+|+||....+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6899999999999999999999999999987443
No 258
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.61 E-value=0.0001 Score=60.36 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
||++|||+|++|+.+|..+++.|.+|+++|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 699999999999999999999999999999874
No 259
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.58 E-value=0.00012 Score=57.74 Aligned_cols=45 Identities=31% Similarity=0.538 Sum_probs=34.1
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
|..+|||+|+|.|..-...|..|++.|.+|+.+|+++.+|+...+
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 457899999999999999999999999999999999999987543
No 260
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.53 E-value=0.00014 Score=57.52 Aligned_cols=44 Identities=36% Similarity=0.480 Sum_probs=39.2
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
...||++|||+|.-|+.+|..|++.|.+|.++|++..+||...+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavt 55 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVT 55 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceee
Confidence 56899999999999999999999999999999999777765443
No 261
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.49 E-value=0.00014 Score=57.64 Aligned_cols=32 Identities=56% Similarity=0.742 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHHcC---CcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG---QKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g---~~v~v~e~~~ 64 (119)
||+|||||++|..+|..|++.+ ++|+|+|+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 6999999999999999999988 8999999885
No 262
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.47 E-value=0.00036 Score=53.34 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=35.9
Q ss_pred cccccccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTP 68 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~ 68 (119)
....++|.+|||+|++|++.|..|.-+ +++|.++|++..++-
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 345789999999999999999987654 899999999987663
No 263
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.00015 Score=58.48 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
..|||+|||||++|+.+|+..++.|.+++++-..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 4599999999999999999999999999998655
No 264
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.36 E-value=4.9e-05 Score=55.21 Aligned_cols=41 Identities=39% Similarity=0.452 Sum_probs=34.8
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCcccCcee
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g~~~~ 71 (119)
..|++|+|+|.+|+++||..+++ .++|.++|+.-.+||..|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 46999999999999999999854 678999999877776544
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.35 E-value=0.00035 Score=54.00 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCCcc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGNYF 66 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~~~ 66 (119)
..+++|||+|++|+.+|..|++.+. +++++++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 3579999999999999999999877 79999887543
No 266
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.35 E-value=9.3e-05 Score=59.66 Aligned_cols=41 Identities=29% Similarity=0.497 Sum_probs=36.3
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+|||+|||||.+|..||+-.+-+|+++.++|+++..-|.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 35699999999999999999999999999999999865443
No 267
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.34 E-value=0.00027 Score=57.72 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=34.4
Q ss_pred ccccccEEEECCChHHHHHHHHHHHc-CCcEEEEecCCcc
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASA-GQKVVVIEKGNYF 66 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~~~~~ 66 (119)
...+||++|||||-+|+..|.+|++. .++|+|+|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45789999999999999999999985 6799999998644
No 268
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.30 E-value=0.00053 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCcccCceeeccCC
Q 033419 41 CGGGVAAAVLASAGQKVVVIEKGNYFTPKDYSLLEA 76 (119)
Q Consensus 41 ~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~~~~~ 76 (119)
++||++|+.|+++|++|+|+|+.+.+||..++....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~ 36 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFD 36 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEET
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCC
Confidence 489999999999999999999999999987765544
No 269
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.27 E-value=0.00042 Score=54.09 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~ 66 (119)
+++|||+|++|+++|..|++.+ .+|+|+|+.+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999998864 589999998764
No 270
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.25 E-value=0.0003 Score=54.95 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=28.5
Q ss_pred EECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 36 IVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 36 iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
|||+|.+|+.+|..+++.|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 271
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00039 Score=53.78 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=33.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCce
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~ 70 (119)
...|||+|||+||+|.++|.+.+++|++.-++ ...+||..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 45799999999999999999999999997776 23567753
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.23 E-value=0.00051 Score=53.88 Aligned_cols=35 Identities=20% Similarity=0.504 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g 67 (119)
+|+|||+|++|+.+|..|++. +.+|+|+|+.+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 699999999999999999876 67899999986543
No 273
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.18 E-value=0.00057 Score=53.40 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=32.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
....+++|||||.+|+.+|..|.+.+.+++|+|+.+.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 34578999999999999999998778899999987643
No 274
>PRK09897 hypothetical protein; Provisional
Probab=97.17 E-value=0.00066 Score=54.90 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~~g 67 (119)
.+|+|||+|++|+++|.+|.+. .++|+|+|+...+|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 3799999999999999999875 45899999987777
No 275
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00053 Score=54.89 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=33.1
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
+.+..|||+|||||.+|..+|...++.|.+.+++-+.
T Consensus 24 s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 24 SSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 3467899999999999999999999999999998765
No 276
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.16 E-value=0.0018 Score=50.11 Aligned_cols=39 Identities=41% Similarity=0.710 Sum_probs=33.1
Q ss_pred ccccEEEECCChHHHHHHHHHHH----cCCcEEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLAS----AGQKVVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~----~g~~v~v~e~~~~~g~ 68 (119)
.++||+|||||..|++.|+-|.+ .|++|+|+|+.+.+.-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 57899999999999999998754 3799999999876543
No 277
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00072 Score=51.93 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=33.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
+..|.|||+|.+|..+||+++++|.+|.+.|-++.-+..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tp 41 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTP 41 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCC
Confidence 345899999999999999999999999999988765433
No 278
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.12 E-value=0.0008 Score=51.08 Aligned_cols=39 Identities=38% Similarity=0.451 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
..+++|+|+|+.|+.+|..++++|++|+++|..+.+++.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 368999999999999999999999999999999887765
No 279
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.04 E-value=0.00073 Score=53.94 Aligned_cols=34 Identities=44% Similarity=0.562 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
||+|||+|.+|+++|+.|.+. ++|+|+-|.+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~ 42 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE 42 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence 899999999999999999987 9999999887643
No 280
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0061 Score=50.62 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=33.8
Q ss_pred cccccccccEEEECCChHHHHHHHHHHHcCCcE-EEEecCCcccCc
Q 033419 25 QNVYKIKCDVVIVGSGCGGGVAAAVLASAGQKV-VVIEKGNYFTPK 69 (119)
Q Consensus 25 ~~~~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v-~v~e~~~~~g~~ 69 (119)
+.......|++|||+|..|..++++|++.|.++ +++|+...-.+.
T Consensus 33 s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgt 78 (856)
T KOG2844|consen 33 STPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGT 78 (856)
T ss_pred cccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccc
Confidence 334445689999999999999999999999984 455555443333
No 281
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.91 E-value=0.0018 Score=49.80 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
.++|||+|.+|++++..+-..|-.|+++|+...+||+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999888889999999999987443
No 282
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0012 Score=50.99 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=31.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
...||.+|||+|.+|++||...+..|.+|.++|-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4579999999999999999999999999999985
No 283
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0026 Score=46.67 Aligned_cols=36 Identities=33% Similarity=0.301 Sum_probs=31.9
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
+...-+++|||+||++..+|.+++++.++.+++|.-
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 344568999999999999999999999999999954
No 284
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0012 Score=51.39 Aligned_cols=39 Identities=31% Similarity=0.181 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~ 68 (119)
..+.|+|||+||+|+.+|.+|-+ .+++|.++|+.+.+.|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 34589999999999999998766 4689999999987665
No 285
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.74 E-value=0.0022 Score=43.58 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.8
Q ss_pred EEECCChHHHHHHHHHHHc-----CCcEEEEecCCc
Q 033419 35 VIVGSGCGGGVAAAVLASA-----GQKVVVIEKGNY 65 (119)
Q Consensus 35 ~iiG~G~~G~~~a~~l~~~-----g~~v~v~e~~~~ 65 (119)
+|||+|++|++++.+|.+. ..+++|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999776 568999999655
No 286
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.0039 Score=48.32 Aligned_cols=43 Identities=28% Similarity=0.284 Sum_probs=37.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCcee
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDY 71 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~ 71 (119)
...||.+|||+|..|+.+|.+.+..|.++.++|..-..||.+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 3589999999999999999999999999999998766776543
No 287
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.71 E-value=0.0022 Score=48.79 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~ 65 (119)
+++|||||++|+.+|.++.++ +.+++|+|+.+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999998643 679999998764
No 288
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.0024 Score=50.31 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=39.7
Q ss_pred ccccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCceee
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPKDYS 72 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~~~~ 72 (119)
....+|++|||.|..=...|...++.|.+|+-+|+++.+|+.+.+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS 49 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS 49 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence 346899999999998888888889999999999999999987653
No 289
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.66 E-value=0.0019 Score=49.39 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=26.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF 66 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~ 66 (119)
.+|+++||.||++++.|..|...+ .+++++|+.+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 589999999999999999998765 899999987753
No 290
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.63 E-value=0.004 Score=47.75 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~~ 65 (119)
.+++|||+|++|+.+|..+++. ..+++++++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999875 457999987663
No 291
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.59 E-value=0.0034 Score=49.35 Aligned_cols=37 Identities=43% Similarity=0.572 Sum_probs=30.8
Q ss_pred ccccccEEEECCChHHHHHHHHHHHc----CCcEEEEecCC
Q 033419 28 YKIKCDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGN 64 (119)
Q Consensus 28 ~~~~~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~ 64 (119)
.+..+||+|+|||++|...|..|... .++++++|...
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 34589999999999999988888753 56899999873
No 292
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.55 E-value=0.022 Score=45.55 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=34.1
Q ss_pred ccccEEEECCChHHHHHHHHHHH--cCCcEEEEecCCcccC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLAS--AGQKVVVIEKGNYFTP 68 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~--~g~~v~v~e~~~~~g~ 68 (119)
.++||++||||+.+.+.++.|.+ ..+++.++||-+.++.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ 42 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVAL 42 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchh
Confidence 47899999999999999999987 4779999999887663
No 293
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.51 E-value=0.0045 Score=47.52 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=33.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHc-CC-cEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASA-GQ-KVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~-g~-~v~v~e~~~~~g~~ 69 (119)
..++.++|+|||.+|+..|..+.++ +. +|.++|.....-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQ 79 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQ 79 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccC
Confidence 4789999999999999999998765 54 79999987665444
No 294
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.38 E-value=0.0062 Score=47.07 Aligned_cols=35 Identities=40% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 46999999999999999999999999999987654
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.31 E-value=0.006 Score=42.58 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..++..|++|.++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 37899999999999999999999999999875
No 296
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.24 E-value=0.0065 Score=41.32 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|+|+|..|.++|..|+++|.+|.+..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 47899999999999999999999999998774
No 297
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.23 E-value=0.0082 Score=47.48 Aligned_cols=35 Identities=37% Similarity=0.450 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|++|+.+|..+++.|.+|+++|+.+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 47999999999999999999999999999987643
No 298
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.008 Score=43.44 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+++|+|+|..|...|..|.+.|..|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 589999999999999999999999999998753
No 299
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.19 E-value=0.01 Score=46.40 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|.+|+.+|..+++.|.+|+++|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 46999999999999999999999999999987644
No 300
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.0075 Score=47.41 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.++|+|.|++|+++|..|.++|++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999987543
No 301
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.0086 Score=47.44 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+++|+|+|.+|+.+|..|.++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 369999999999999999999999999999664
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.15 E-value=0.0099 Score=45.58 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 46999999999999999999999999999987643
No 303
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.12 E-value=0.011 Score=46.33 Aligned_cols=35 Identities=40% Similarity=0.466 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+++|||+|.+|+.+|..+++.|.+|+++|+.+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 57999999999999999999999999999987643
No 304
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.11 E-value=0.013 Score=39.05 Aligned_cols=31 Identities=35% Similarity=0.642 Sum_probs=29.1
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++|+|+|..|...|++|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998876
No 305
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.06 E-value=0.012 Score=46.27 Aligned_cols=36 Identities=33% Similarity=0.545 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcC--CcEEEEecCCcc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAG--QKVVVIEKGNYF 66 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g--~~v~v~e~~~~~ 66 (119)
..+++|+|||.+|+.++..|.++. .+++++|+.+.+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 357999999999999999999874 899999998754
No 306
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.98 E-value=0.013 Score=46.05 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 46999999999999999999999999999987643
No 307
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.97 E-value=0.014 Score=46.03 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|++|+.+|..+.+.|.+|+++++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 47999999999999999999999999999987643
No 308
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.96 E-value=0.015 Score=45.77 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 57999999999999999999999999999987543
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.94 E-value=0.014 Score=46.29 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 47999999999999999999999999999987643
No 310
>PRK06370 mercuric reductase; Validated
Probab=95.87 E-value=0.017 Score=45.53 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 47999999999999999999999999999987654
No 311
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.86 E-value=0.016 Score=46.14 Aligned_cols=37 Identities=41% Similarity=0.545 Sum_probs=33.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
+-.++|||+|..|+..|..+++.|.+|+|+|+.+.+-
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3469999999999999999999999999999987654
No 312
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.84 E-value=0.017 Score=45.64 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4799999999999999999999999999998764
No 313
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.82 E-value=0.017 Score=44.94 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|++|+.+|..+++.|.+|+++++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999987654
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.78 E-value=0.018 Score=45.58 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 46999999999999999999999999999987643
No 315
>PRK07846 mycothione reductase; Reviewed
Probab=95.75 E-value=0.019 Score=45.36 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 57999999999999999999999999999987644
No 316
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.75 E-value=0.017 Score=45.30 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4699999999999999999999999999998764
No 317
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.73 E-value=0.016 Score=48.95 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHHc---CCcEEEEecCCccc
Q 033419 34 VVIVGSGCGGGVAAAVLASA---GQKVVVIEKGNYFT 67 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~---g~~v~v~e~~~~~g 67 (119)
++|||+|++|+.+|..+.+. +++|+|+|+.+.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 58999999999999988764 56899999987654
No 318
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.73 E-value=0.019 Score=45.07 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++|+.+.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 46999999999999999999999999999987643
No 319
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.016 Score=43.47 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+|.|||+|..|...|..++++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999999999999875
No 320
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.70 E-value=0.022 Score=44.99 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+.+|..+++.|.+|+++|+.+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4799999999999999999999999999998654
No 321
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.68 E-value=0.023 Score=44.64 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 47999999999999999999999999999987654
No 322
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.67 E-value=0.013 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|+|.|..|+..|..++++|++|+.+|..+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 48999999999999999999999999999875
No 323
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.021 Score=45.54 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CC-cEEEEecCCcccC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA--GQ-KVVVIEKGNYFTP 68 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~--g~-~v~v~e~~~~~g~ 68 (119)
++|+|||+|++|+..|.+|.+. .- .+.|+|+...+|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 6899999999999999998764 22 3999999988874
No 324
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.023 Score=44.49 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...++|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3569999999999999999999999999999864
No 325
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.55 E-value=0.026 Score=44.60 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=31.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 47999999999999999999999999999987643
No 326
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.54 E-value=0.024 Score=42.33 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.|.|||+|.-|...|..+++.|++|+++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999998764
No 327
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.54 E-value=0.029 Score=42.15 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+++|+|+|..|...|..|++.|.+|+++.+..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 469999999999999999999999999998764
No 328
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.54 E-value=0.023 Score=48.47 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHc----CCcEEEEecCCccc
Q 033419 33 DVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFT 67 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g 67 (119)
+++|||+|++|+.+|..|.+. +++++|+++.+.+.
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 799999999999999998754 57899999887654
No 329
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.40 E-value=0.03 Score=44.45 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-.++|||+|..|+.+|..+++.|.+|+++++.+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 47999999999999999999999999999987643
No 330
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.028 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..++++|++|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48999999999999999999999999999764
No 331
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.29 E-value=0.037 Score=41.59 Aligned_cols=33 Identities=33% Similarity=0.374 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+++|+|+|..|...|+.|++.|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 369999999999999999999999999999853
No 332
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.031 Score=41.52 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..++++|++|+++|..+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999998764
No 333
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.034 Score=41.30 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..+.|||+|..|...|..++++|++|+++|+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 459999999999999999999999999999764
No 334
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.27 E-value=0.035 Score=43.34 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+++|||+|++|+.+|..+.+.|.+|+++++.+.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 4799999999999999999999999999998764
No 335
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.26 E-value=0.028 Score=38.85 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.-+|+|||+|.++.-++..|.+.|.+|+++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 46799999999999999999999999999977653
No 336
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.22 E-value=0.041 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..|++.|.+|+++++.+.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 46999999999999999999999999999986643
No 337
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.21 E-value=0.03 Score=47.28 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..|++.|.+|+++|+.+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 36999999999999999999999999999987643
No 338
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.032 Score=42.52 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..++..|++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 339
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.18 E-value=0.036 Score=40.96 Aligned_cols=31 Identities=35% Similarity=0.676 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
++.|+|+|..|...|..|++.|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999974
No 340
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.16 E-value=0.04 Score=43.36 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 36999999999999999999999999999987643
No 341
>PRK06116 glutathione reductase; Validated
Probab=95.15 E-value=0.04 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4799999999999999999999999999998764
No 342
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.011 Score=46.39 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=36.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
...|||+|+|-|..=+..+..|+..|.+|+.+|+++..|+.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence 45699999999998888888899999999999999999875
No 343
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.11 E-value=0.039 Score=40.88 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEec
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEK 62 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~ 62 (119)
+++|+|+|..|...|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 344
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.10 E-value=0.043 Score=42.98 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47999999999999999999999999999987643
No 345
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.04 E-value=0.039 Score=44.29 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..|++.+.+|+++++.+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 47999999999999999999999999999976544
No 346
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.046 Score=42.64 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=35.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcccCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFTPK 69 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g~~ 69 (119)
.|||+|.|.|+.=...+..|+..|.+|+.+|+++..|..
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 699999999999888888999999999999999988854
No 347
>PLN02507 glutathione reductase
Probab=94.99 E-value=0.046 Score=43.82 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 4799999999999999999999999999998764
No 348
>PTZ00058 glutathione reductase; Provisional
Probab=94.98 E-value=0.043 Score=44.78 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 346999999999999999999999999999987643
No 349
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.97 E-value=0.041 Score=47.00 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.++|||+|..|+.+|..|++.|.+|+++|..+.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 689999999999999999999999999998764
No 350
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.93 E-value=0.057 Score=37.06 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=29.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+..++|+|+|.+|..++.-+...|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45689999999999999999999999999999764
No 351
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.92 E-value=0.051 Score=38.76 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-.++|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999997653
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.92 E-value=0.056 Score=34.30 Aligned_cols=31 Identities=42% Similarity=0.545 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++|+|.|..|..++..|.+.+.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999777999999886
No 353
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.91 E-value=0.053 Score=35.75 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~ 65 (119)
...++|+|+|..|..+|..|++.|. +++++|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3569999999999999999999999 6999997643
No 354
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.043 Score=40.79 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+.|||+|..|...|..++++|++|+++|+.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 589999999999999999999999999997653
No 355
>PRK13748 putative mercuric reductase; Provisional
Probab=94.90 E-value=0.049 Score=43.93 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+++|||+|..|+..|..+++.|.+|+++++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 479999999999999999999999999999753
No 356
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.86 E-value=0.055 Score=36.99 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.-.++|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 457999999999999999999999999999643
No 357
>PRK14694 putative mercuric reductase; Provisional
Probab=94.84 E-value=0.057 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+++|||+|..|+..|..+++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 479999999999999999999999999998753
No 358
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.83 E-value=0.052 Score=45.18 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCccc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYFT 67 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~g 67 (119)
-+++|||+|..|+..|..+++.|.+|+++|+.+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 479999999999999999999999999999876543
No 359
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.81 E-value=0.051 Score=42.91 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+++|||+|..|+-+|..+.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998763
No 360
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.80 E-value=0.062 Score=38.17 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~ 63 (119)
....|+|+|+|-.|..+|..|++.|. +++++|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45689999999999999999999999 69999976
No 361
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.80 E-value=0.048 Score=40.30 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|||+|..|...|..++++|++|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999999654
No 362
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.79 E-value=0.048 Score=44.25 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-+++|||+|..|+..|..|++.|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 4799999999999999999999999999998764
No 363
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.74 E-value=0.092 Score=42.26 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCcEEEEecCCcccCce
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA----GQKVVVIEKGNYFTPKD 70 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~----g~~v~v~e~~~~~g~~~ 70 (119)
.+.-|||+|+++|++|..|-+- |-++.++|+.+..||..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 3577999999999999999663 56899999999888764
No 364
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.059 Score=40.68 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|||+|..|...|..|+++|++|+++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 59999999999999999999999999999754
No 365
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.67 E-value=0.093 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~ 64 (119)
....++|+|+|-+|-.+++.|...|.+ ++++.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 356799999999999999999999997 99998764
No 366
>PRK10262 thioredoxin reductase; Provisional
Probab=94.65 E-value=0.064 Score=40.13 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..|++.+.+|+++++.+.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999987643
No 367
>PRK14727 putative mercuric reductase; Provisional
Probab=94.60 E-value=0.068 Score=42.48 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+++|||+|..|+..|..+++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 469999999999999999999999999998753
No 368
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.58 E-value=0.07 Score=39.90 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..|.|||+|..|...|..+++.|++|+++|+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 359999999999999999999999999999754
No 369
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.53 E-value=0.071 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
.+++|||+|..|+.+|..+++.+.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999989999999987643
No 370
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.52 E-value=0.074 Score=37.82 Aligned_cols=33 Identities=39% Similarity=0.465 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.-.++|||+|-.|...+..|.+.|.+++|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 457999999999999999999999999999764
No 371
>PRK12831 putative oxidoreductase; Provisional
Probab=94.52 E-value=0.063 Score=42.65 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+|+|||+|.+|+-+|..+.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998753
No 372
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.47 E-value=0.078 Score=41.09 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=30.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
...+++|+|+|.+|..++..+...|.+|.++|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3467999999999999999999999999999875
No 373
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.46 E-value=0.068 Score=42.17 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-.++|+|.|+.|+.+|..+...|.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 369999999999999999999999999998764
No 374
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.45 E-value=0.069 Score=42.90 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+.+|..|+..+.+|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 47999999999999999999999999999887643
No 375
>PTZ00052 thioredoxin reductase; Provisional
Probab=94.45 E-value=0.067 Score=42.85 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
-+++|||+|..|+..|..|++.|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999874
No 376
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.44 E-value=0.058 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
++|+|+|+.+...+..+...|++|+++|..+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 57999999999999999999999999998754
No 377
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.41 E-value=0.058 Score=42.49 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=34.4
Q ss_pred cccccccEEEECCChHHHHHHHHHHHcC-CcEEEEecCCcc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGNYF 66 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~~~ 66 (119)
+++..+|++.||-||+-++.|..|...+ .+++.+||.+.+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3567899999999999999999998764 789999998754
No 378
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=94.40 E-value=0.072 Score=42.54 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
-+++|||+|..|+..|..+++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 46999999999999999999999999999874
No 379
>PLN02546 glutathione reductase
Probab=94.37 E-value=0.076 Score=43.33 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+++.|.+|+++++.+.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 47999999999999999999999999999987643
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.36 E-value=0.042 Score=34.75 Aligned_cols=34 Identities=35% Similarity=0.381 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...++|||+|..|..-+..|.+.|.+++++.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4579999999999999999999999999998773
No 381
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.36 E-value=0.079 Score=40.31 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~ 64 (119)
-.++|||+|..|+.+|..+.+.|.+ |+++++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 3699999999999999999888997 99998754
No 382
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.20 E-value=0.11 Score=38.77 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999996 799999764
No 383
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.16 E-value=0.18 Score=40.80 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...+|+|+|+|++|+.+..-+...|.+|.++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35679999999999999998888899999998764
No 384
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.12 E-value=0.1 Score=38.29 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
....++|+|+|+.+...+..+...|++|+++|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999997755
No 385
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.07 E-value=0.097 Score=41.92 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHH---cCCcEEEEecCCcc
Q 033419 32 CDVVIVGSGCGGGVAAAVLAS---AGQKVVVIEKGNYF 66 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~---~g~~v~v~e~~~~~ 66 (119)
-+++|||+|..|+..|..+.. .|.+|+++|+.+.+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 469999999999999976543 48999999987643
No 386
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.00 E-value=0.1 Score=38.76 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 49999999999999999999999999999764
No 387
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.93 E-value=0.22 Score=36.04 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc---EEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQK---VVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~---v~v~e~~ 63 (119)
.+++|+|+|-+|..+|..|.+.|.+ +.++|+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4699999999999999999999985 9999987
No 388
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.89 E-value=0.14 Score=33.93 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.++|+|.|-.|..++..|.+.|. +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 699998763
No 389
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.85 E-value=0.057 Score=42.50 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=29.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHc-------------CCcEEEEecCCccc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA-------------GQKVVVIEKGNYFT 67 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~-------------g~~v~v~e~~~~~g 67 (119)
...+++|+|||++|...|..|+.. .++|.++|+.+.+-
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 345799999999999988877542 13899999998554
No 390
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.82 E-value=0.093 Score=40.99 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|||.|..|+..|..|+++|++|+++|+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 48999999999999999999999999999864
No 391
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.82 E-value=0.12 Score=39.00 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.+.|||+|..|..+|+.++.+|+ +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 68999999999999999999887 899999743
No 392
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.81 E-value=0.32 Score=33.70 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=30.1
Q ss_pred ccccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419 30 IKCDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...+++|+|+|- +|..+|..|.++|.+++++.+..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 345799999997 69999999999999999998763
No 393
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.80 E-value=0.15 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.|+|+|+|-.|..++..|++.|. +++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999764
No 394
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=93.79 E-value=0.073 Score=40.66 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCcEEEEecCCcccCceeec
Q 033419 45 VAAAVLASAGQKVVVIEKGNYFTPKDYSL 73 (119)
Q Consensus 45 ~~a~~l~~~g~~v~v~e~~~~~g~~~~~~ 73 (119)
++|+.|+++|++|+|+|+.+.+||...+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~ 29 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSF 29 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEe
Confidence 37899999999999999999999985543
No 395
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.78 E-value=0.14 Score=39.33 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=32.0
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 356789999999999999999999999 899999753
No 396
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.77 E-value=0.11 Score=38.77 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|||+|..|...|..|++.|+.|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999998864
No 397
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.25 Score=37.48 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=29.2
Q ss_pred ccEEEECCC-hHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+++|||.| ..|...|..|.++|+.|+++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 379999996 899999999999999999997653
No 398
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.76 E-value=0.12 Score=40.49 Aligned_cols=33 Identities=42% Similarity=0.469 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHH--------------cCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLAS--------------AGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~--------------~g~~v~v~e~~~~ 65 (119)
.++|||+|++|+..|..|+. .+.+|+++++.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999988864 3788999998753
No 399
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.28 Score=36.78 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=28.3
Q ss_pred cEEEECCCh-HHHHHHHHHHHcCCcEEEEecC
Q 033419 33 DVVIVGSGC-GGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 33 dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
+++|+|.|. +|..+|..|.+.|..|+++.+.
T Consensus 161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 161 HAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 699999997 9999999999999999999874
No 400
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.72 E-value=0.13 Score=39.40 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45679999999999999999999999 799999764
No 401
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.72 E-value=0.13 Score=38.84 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
++.|||+|..|..+|+.|+.+|. .+.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 58999999999999999999995 799999865
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.68 E-value=0.1 Score=41.00 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..+.|||.|..|+..|..|+++|++|+.+|..+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 359999999999999999999999999999764
No 403
>PRK04148 hypothetical protein; Provisional
Probab=93.67 E-value=0.077 Score=35.60 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
..+++||.| .|...|..|++.|++|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 899889999999999999997764
No 404
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.63 E-value=0.17 Score=36.28 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=31.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|+|+|-.|..+|..|++.|. +++++|...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356789999999999999999999999 599998763
No 405
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.59 E-value=0.15 Score=38.41 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+.|||+|.-|...|..|.+.|++|+++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 59999999999999999999999999999854
No 406
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.16 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.++.|||.|..|...|..|.+.|++|.+.++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 359999999999999999999999999998764
No 407
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.13 Score=40.21 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.++|+|+|..|+++|..|++.|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 58999999999999999999999999999654
No 408
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.57 E-value=0.17 Score=35.90 Aligned_cols=36 Identities=33% Similarity=0.570 Sum_probs=31.9
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 356789999999999999999999998 799999763
No 409
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.56 E-value=0.14 Score=38.62 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|+|+|..|...|..|++.|.+|.++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999998853
No 410
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.56 E-value=0.16 Score=37.03 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=31.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-...+|+|+|+|-.|..+|..|++.|. +++++|...
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356789999999999999999999998 688888764
No 411
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.53 E-value=0.13 Score=35.66 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=26.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..++|+|-|..|..+|..|+..|.+|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999876
No 412
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=0.34 Score=36.49 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=29.5
Q ss_pred ccEEEECCCh-HHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGC-GGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~-~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+++|||.|. .|..+|..|.++|..|+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 3799999988 99999999999999999998753
No 413
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.49 E-value=0.076 Score=39.88 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=25.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~ 64 (119)
.++|||||++|.+||.+|+.. ..+++++-..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 378999999999999999864 55788876554
No 414
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.47 E-value=0.11 Score=41.50 Aligned_cols=40 Identities=35% Similarity=0.392 Sum_probs=33.5
Q ss_pred cccccccEEEECCChHHHHHHHHHHHc-----CCcEEEEecCCcc
Q 033419 27 VYKIKCDVVIVGSGCGGGVAAAVLASA-----GQKVVVIEKGNYF 66 (119)
Q Consensus 27 ~~~~~~dv~iiG~G~~G~~~a~~l~~~-----g~~v~v~e~~~~~ 66 (119)
.+...+|+++||+|++|+.+|+.++.. .+.++++|.+...
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 456789999999999999999998753 6789999987543
No 415
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.46 E-value=0.14 Score=41.64 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+.+++|+|.|..|...|..|.+.|.+++++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46799999999999999999999999999998754
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.46 E-value=0.14 Score=40.12 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~ 64 (119)
+++|+|+|..|..+|..|++.+ .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 6999999999999999999998 7999999873
No 417
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.39 E-value=0.19 Score=38.23 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~~ 65 (119)
...+.|||+|..|..+|+.++..|+ .+.++|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3579999999999999999999997 8999997553
No 418
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.36 E-value=0.17 Score=36.96 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=31.5
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-...+|+|+|.|..|..++..|++.|. +++++|...
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 356789999999999999999999998 788888653
No 419
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.32 E-value=0.15 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.|.|||+|..|...|..+.++|++|+++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 420
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.27 E-value=0.16 Score=34.61 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++-+||-|..|...|.+|.++|++|.++|+.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 58899999999999999999999999999774
No 421
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.26 E-value=0.16 Score=40.06 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=29.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.-+++|||+|..|+.+|..+.+.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3479999999999999999999988 899998753
No 422
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.54 Score=34.83 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=41.2
Q ss_pred CchHHHHHHHhHcCcccccCC-------ccc-cccccccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 3 ETDSTIVQSLTQKGLQVTKDS-------KQN-VYKIKCDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+.+.+++++...+++..... ... ++.....++|.|+ |-.|..+|..|++.|++|+++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 4 RPLRRLTDQLTLAGMRPPISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred chHHHHHHHHHHhccCCCCCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 345677777776666554221 111 1112345788887 5579999999999999999998753
No 423
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.23 E-value=0.19 Score=36.18 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|.|-.|..+|..|++.|. +++++|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999999999999999999999 688888654
No 424
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.22 E-value=0.15 Score=40.09 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
...++|+|.|..|..+|..+...|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3479999999999999999999999999998664
No 425
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.18 E-value=0.13 Score=38.01 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+|.|||.|..|.+.|..|.++|++|+++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48899999999999999999999999999764
No 426
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.17 E-value=0.18 Score=35.73 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..++|+|.|..|..+|..|.+.|.+|++.|...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 359999999999999999999999999998754
No 427
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.14 E-value=0.22 Score=37.82 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=30.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
...++.|||+|.+|..+|+.|...++ .+.++|...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34689999999999999999999888 699999754
No 428
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.07 E-value=0.14 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..|.|||+|.-|..+|..++..|++|+++|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 429
>PRK08328 hypothetical protein; Provisional
Probab=93.05 E-value=0.22 Score=36.11 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|+|-.|..++..|++.|. +++++|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46789999999999999999999999 688988653
No 430
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.96 E-value=0.18 Score=42.42 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~ 64 (119)
-+|+|||+|.+|+-+|..+.+.|.+ |+++++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99998764
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.94 E-value=0.16 Score=41.01 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.|.|||+|.-|..+|..+++.|++|+++|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999998753
No 432
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.93 E-value=0.26 Score=33.00 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=28.5
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 33 DVVIVGS-GCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~-G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
+|.|||+ |..|...|+.|...++ .+.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 9999999999998877 589999874
No 433
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.92 E-value=0.37 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..+++|+|+|.+|+.++..+...|.+|.++|...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998765
No 434
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.85 E-value=0.22 Score=37.25 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
++.|||+|..|...|+.++..|+ .+.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 69999999999999999998876 899999754
No 435
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.24 Score=38.93 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
..++|+|.|..|+++|..|+++|++|++.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3699999999999999999999999999997543
No 436
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.80 E-value=0.25 Score=34.92 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|.|..|..++..|++.|. +++++|...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 56789999999999999999999999 588998664
No 437
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.79 E-value=0.44 Score=33.16 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=28.2
Q ss_pred ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
..++|+|+ |..|..++..+.+.|.++.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999997 999999999999999999998765
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.78 E-value=0.18 Score=39.37 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+++|+|+|..|...+..|.+.|++++++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 58999999999999999999999999999854
No 439
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.76 E-value=0.22 Score=37.43 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..+++|+|.|.+|..++..|.+.|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999999999998874
No 440
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.73 E-value=0.21 Score=37.35 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
..++|+|+|-+|.++++.|.+.|. +++|+++..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999998 699998763
No 441
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.73 E-value=0.16 Score=42.62 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..|.|||+|.-|..+|..++..|++|+++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999765
No 442
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.72 E-value=0.46 Score=31.49 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAG-QKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g-~~v~v~e~~~ 64 (119)
-+++|+|+|..|...+..+.+.| .++.++++..
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 35999999999999999999885 6899988764
No 443
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.71 E-value=0.18 Score=40.74 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
-.|.|||+|.-|...|..+++.|+.|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999997753
No 444
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.64 E-value=0.28 Score=34.70 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|.|-.|..++..|++.|. +++++|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999999 599998664
No 445
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.61 E-value=0.2 Score=39.65 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.++|+|.|..|+++|..|.+.|++|++.|..+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999754
No 446
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.58 E-value=0.21 Score=37.34 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 34 VVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 34 v~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
+.|||+|..|..+|+.++.+++ .++++|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998887 999999865
No 447
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.55 E-value=0.16 Score=37.40 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=32.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
..-..|.|||+|.-|..+|...+..|+.|.++|+...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 3446799999999999999999999999999998763
No 448
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.54 E-value=0.21 Score=37.41 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..++|+|.|..|..+|..|...|.+|+++++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999999999998865
No 449
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.2 Score=40.13 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.++|+|.|..|++++..|.+.|.+|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999999999999999999965
No 450
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.44 E-value=0.22 Score=39.44 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..++|+|.|..|..+|..+...|.+|+++|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 359999999999999999999999999998764
No 451
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.40 E-value=0.26 Score=37.01 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
.+.|||+|.+|..+|+.|..+|+ .+.++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999985 699999854
No 452
>PRK08223 hypothetical protein; Validated
Probab=92.33 E-value=0.28 Score=36.96 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=31.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|||+|-.|..+|..|++.|. ++.++|...
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 356789999999999999999999999 688988663
No 453
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.33 E-value=0.3 Score=35.56 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=31.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|+|.|-.|..++..|++.|. +.+++|...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35679999999999999999999999 799998654
No 454
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.28 E-value=0.31 Score=36.93 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
+.+|.|||+|..|.++|+.|...++ .+.++|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4579999999999999999998887 588998754
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.15 E-value=0.22 Score=36.90 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+|.|||.|..|...|..+.+.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999774
No 456
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.00 E-value=0.27 Score=38.68 Aligned_cols=32 Identities=31% Similarity=0.581 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|+|.|-.|+..+.-+++.|+.|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999998764
No 457
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.97 E-value=0.22 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..|.|||+|.-|..+|..++..|++|+++|..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 469999999999999999999999999999775
No 458
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.94 E-value=0.32 Score=34.67 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=28.4
Q ss_pred cEEEEC-CChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVG-SGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.||| +|..|...|..|.++|.+|.++++.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 488997 79999999999999999999998764
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.89 E-value=0.28 Score=38.30 Aligned_cols=35 Identities=34% Similarity=0.367 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.-.++|+|+|..|..++..|.+.|.+++++|+.+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 35699999999999999999999999999988753
No 460
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.88 E-value=0.12 Score=41.09 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=28.8
Q ss_pred ccccEEEECCChHHHHHHHHHH--------------HcCCcEEEEecCCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLA--------------SAGQKVVVIEKGNY 65 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~--------------~~g~~v~v~e~~~~ 65 (119)
.-..++||||||+|...|..|+ +.-++|+++|..+.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4467999999999999888773 23468999999873
No 461
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.82 E-value=0.28 Score=37.59 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.++|+|+||.|+.++..+...|. +++++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999777777887 566777654
No 462
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.78 E-value=0.28 Score=40.55 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
+.+++|+|.|..|...+..|.+.|.+++++|+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 56899999999999999999999999999998864
No 463
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.68 E-value=0.4 Score=36.39 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....+.|||+|..|..+|+.+...++ .+.++|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 34579999999999999999998884 788998754
No 464
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.52 E-value=0.36 Score=37.95 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.--++|+|-|..|+++|..|.+.|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4459999999999999999999999999999754
No 465
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.51 E-value=0.3 Score=38.90 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.++|+|.|..|.++|..|.+.|.+|++.|..+
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 59999999999999999999999999999653
No 466
>PLN02494 adenosylhomocysteinase
Probab=91.45 E-value=0.36 Score=38.80 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-.++|+|.|..|..+|..+...|.+|+++|..+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999998764
No 467
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.36 E-value=0.45 Score=35.57 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-EEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQK-VVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~-v~v~e~~~ 64 (119)
..++|+|+|-+|.++++.|++.|.+ +.++.+..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3589999999999999999999996 99998753
No 468
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.34 E-value=0.34 Score=42.00 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
-+|+|||+|.+|+-+|..+.+.|.+|+++.++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999997653
No 469
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.30 E-value=0.87 Score=34.46 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=27.7
Q ss_pred ccEEEEC-CChHHHHHHHHHHHcCCcEEEEe
Q 033419 32 CDVVIVG-SGCGGGVAAAVLASAGQKVVVIE 61 (119)
Q Consensus 32 ~dv~iiG-~G~~G~~~a~~l~~~g~~v~v~e 61 (119)
.+++||| ++..|...|..|.++|+.|++++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 3799999 88899999999999999999995
No 470
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.28 E-value=0.33 Score=36.89 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+.|||+|.-|...|..++..|+.|+++|..+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 58999999999999999999889999999884
No 471
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.27 E-value=0.45 Score=36.95 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=31.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|+|+|..|..++..|++.|. +++++|...
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 356789999999999999999999998 799998763
No 472
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.27 E-value=0.43 Score=36.79 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.6
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|+|+|-.|..++..|++.|. +++++|...
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356789999999999999999999999 688998664
No 473
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.23 E-value=0.37 Score=39.66 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCCcEEEEecCCc
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGNY 65 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~~ 65 (119)
.+..++|+|.|..|...+..|.+.|++++++|+++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 356799999999999999999999999999998764
No 474
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.22 E-value=1 Score=33.93 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=28.1
Q ss_pred ccEEEECCC-hHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSG-CGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G-~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.+++|||.| ..|...|..|.++|..|+++...
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~ 190 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL 190 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC
Confidence 379999999 78999999999999999998643
No 475
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.21 E-value=0.33 Score=37.88 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
+|.|||.|..|+..|..++. |++|+.+|...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 48899999999999987775 99999999864
No 476
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.18 E-value=0.47 Score=35.93 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
++.|||+|..|.++|+.|..+++ .+.++|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 47899999999999999988887 589999753
No 477
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=91.14 E-value=1.4 Score=33.64 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHc-------CCcEEEEe
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASA-------GQKVVVIE 61 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~-------g~~v~v~e 61 (119)
+..+++|||+|..|++.|..+.+. -.+|+++.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 356899999999999999766552 25677775
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.12 E-value=0.3 Score=40.95 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHH-HcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~ 64 (119)
..|.|||+|..|...|..++ ..|+.|+++|..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999988 8899999999764
No 479
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.11 E-value=0.5 Score=34.47 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
.|+|+|+|-.|...+..|++.|+ +++++|...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 688988664
No 480
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.09 E-value=0.33 Score=40.70 Aligned_cols=33 Identities=36% Similarity=0.389 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHH-HcCCcEEEEecCC
Q 033419 32 CDVVIVGSGCGGGVAAAVLA-SAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~-~~g~~v~v~e~~~ 64 (119)
..|.|||+|.-|...|..++ +.|++|+++|..+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999988 5899999999775
No 481
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.02 E-value=0.44 Score=35.08 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 32 CDVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
-.++|+|+|.+|..++..+.+.|.+++++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35899999999999999999999999999875
No 482
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.88 E-value=0.39 Score=35.86 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|||.|.-|...|..|.++|++|.++++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999999998764
No 483
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.83 E-value=0.47 Score=37.03 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=31.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 56789999999999999999999999 688998654
No 484
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.78 E-value=0.5 Score=36.59 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=30.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKG 63 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~ 63 (119)
....|+|+|+|-.|..++..|++.|. +++++|..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45689999999999999999999999 69999976
No 485
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.75 E-value=0.47 Score=35.77 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
+|+|||+|-.|..++..|+..|. +++++|...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 48999999999999999999999 688888653
No 486
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=90.75 E-value=0.49 Score=34.79 Aligned_cols=36 Identities=31% Similarity=0.346 Sum_probs=29.8
Q ss_pred cccccEEEECCChHHHHHHHHHHHcC-----------CcEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAG-----------QKVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g-----------~~v~v~e~~~ 64 (119)
....+|+|||+|-.|..++..|++.| .+++++|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35678999999999999999999864 3788898654
No 487
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.74 E-value=0.63 Score=28.23 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc-CCcEEEEec
Q 033419 32 CDVVIVGSGCGGGVAAAVLASA-GQKVVVIEK 62 (119)
Q Consensus 32 ~dv~iiG~G~~G~~~a~~l~~~-g~~v~v~e~ 62 (119)
.+++|+|.|..|..++..+.+. +.++.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4699999999999999999987 568889887
No 488
>PRK07411 hypothetical protein; Validated
Probab=90.72 E-value=0.48 Score=37.01 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred cccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 29 KIKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 29 ~~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
-....|+|||+|-.|..+|..|++.|. +++++|...
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 356789999999999999999999999 688888653
No 489
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.64 E-value=0.55 Score=35.32 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=31.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 30 IKCDVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 30 ~~~dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
...+|+|+|.|-.|..+|..|+..|. +++++|...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 46789999999999999999999999 699998664
No 490
>PRK08017 oxidoreductase; Provisional
Probab=90.62 E-value=0.56 Score=33.36 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=28.1
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.++|.|+ |..|..++..|.++|++|+++.+..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899998 8899999999999999999987653
No 491
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.60 E-value=0.4 Score=38.31 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.+.|+|-|..|+++|..|.+.|++|.+.|...
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 59999999999999999999999999999654
No 492
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.58 E-value=0.49 Score=36.04 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ-KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~-~v~v~e~~~ 64 (119)
+|+|||+|-.|..++..|+..|. +++++|...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 48999999999999999999999 688998664
No 493
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.58 E-value=0.39 Score=35.95 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCC--cEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQ--KVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~--~v~v~e~~~ 64 (119)
++.|||.|..|.+.|..+.+.|+ +|.++++..
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 69999999999999999998885 788998764
No 494
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.54 E-value=0.43 Score=36.09 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
++.|+|+|..|...++.|++.|..|+++-+.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 58999999999999999999997787776654
No 495
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.53 E-value=0.44 Score=38.27 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCcEEEEecCC
Q 033419 33 DVVIVGSGCGGGVAAAVLASA--GQKVVVIEKGN 64 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~--g~~v~v~e~~~ 64 (119)
++.|+|.|..|+..|..|+++ |++|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 499999999999999999988 47899998654
No 496
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.53 E-value=0.5 Score=38.02 Aligned_cols=34 Identities=35% Similarity=0.361 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
.-.++|+|.|..|..+|.++...|.+|+++|..+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3469999999999999999999999999997664
No 497
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=90.51 E-value=0.84 Score=34.28 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=28.3
Q ss_pred cccEEEECCChHHHHHHHHHHHc----CC-------cEEEEecCC
Q 033419 31 KCDVVIVGSGCGGGVAAAVLASA----GQ-------KVVVIEKGN 64 (119)
Q Consensus 31 ~~dv~iiG~G~~G~~~a~~l~~~----g~-------~v~v~e~~~ 64 (119)
.-+++++|+|.+|+.+|..+... |+ ++.++|+.-
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 45799999999999999988665 76 688888764
No 498
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.44 E-value=0.46 Score=37.85 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCcEEEEecC
Q 033419 33 DVVIVGSGCGGGVAAAVLASAGQKVVVIEKG 63 (119)
Q Consensus 33 dv~iiG~G~~G~~~a~~l~~~g~~v~v~e~~ 63 (119)
.++|+|.|.+|+++|..|.+.|..|++.|+.
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5999999999999999999999999999964
No 499
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=90.42 E-value=0.47 Score=37.85 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=31.2
Q ss_pred cccccccEEEECC-ChHHHHHHHHHHHc-------CC--cEEEEecCC
Q 033419 27 VYKIKCDVVIVGS-GCGGGVAAAVLASA-------GQ--KVVVIEKGN 64 (119)
Q Consensus 27 ~~~~~~dv~iiG~-G~~G~~~a~~l~~~-------g~--~v~v~e~~~ 64 (119)
++.....|.|||+ |..|..+|+.|... ++ +++++|...
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~ 143 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSK 143 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCc
Confidence 3445678999999 99999999999887 66 688888654
No 500
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.38 E-value=0.7 Score=32.62 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=28.4
Q ss_pred ccEEEECC-ChHHHHHHHHHHHcCCcEEEEecCC
Q 033419 32 CDVVIVGS-GCGGGVAAAVLASAGQKVVVIEKGN 64 (119)
Q Consensus 32 ~dv~iiG~-G~~G~~~a~~l~~~g~~v~v~e~~~ 64 (119)
..++|+|+ |..|..++..+.++|.+|+++++..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45889997 8889999999999999999988753
Done!