Query 033421
Match_columns 119
No_of_seqs 148 out of 1244
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.6 4.2E-16 1.4E-20 118.3 4.5 55 50-104 8-78 (248)
2 1kca_A Repressor protein CI; g 99.1 3.1E-10 1.1E-14 76.2 8.1 51 50-102 15-71 (109)
3 1umu_A UMUD'; induced mutagene 99.1 1.9E-10 6.6E-15 77.5 6.9 50 50-102 29-79 (116)
4 2hnf_A Repressor protein CI101 99.0 2.1E-09 7.1E-14 74.2 8.3 51 50-102 46-102 (133)
5 1jhf_A LEXA repressor; LEXA SO 98.9 3.8E-09 1.3E-13 76.7 7.9 51 50-104 112-163 (202)
6 3bdn_A Lambda repressor; repre 98.6 6.4E-08 2.2E-12 71.2 6.6 52 50-103 142-199 (236)
7 3k2z_A LEXA repressor; winged 98.6 2E-07 7E-12 67.6 8.4 51 50-103 111-162 (196)
8 2fjr_A Repressor protein CI; g 96.2 0.01 3.6E-07 41.6 5.9 45 56-104 113-157 (189)
9 3i4o_A Translation initiation 72.2 1.4 4.9E-05 27.6 1.3 27 62-88 33-65 (79)
10 1jt8_A EIF-1A, probable transl 65.7 2.6 8.9E-05 27.6 1.5 10 77-86 59-68 (102)
11 2qjy_C Ubiquinol-cytochrome C 64.2 24 0.00081 24.9 6.6 66 13-97 8-76 (187)
12 2dgy_A MGC11102 protein; EIF-1 63.7 5.5 0.00019 26.4 2.9 26 62-87 34-64 (111)
13 1d7q_A Translation initiation 58.9 13 0.00044 25.7 4.2 31 56-86 62-94 (143)
14 1w4s_A Polybromo, polybromo 1 54.7 21 0.00073 24.7 4.9 46 59-104 6-55 (174)
15 3cx5_E Cytochrome B-C1 complex 48.3 68 0.0023 22.5 6.9 26 64-91 60-85 (185)
16 2eko_A Histone acetyltransfera 44.6 21 0.00072 22.5 3.2 44 55-98 3-51 (87)
17 1hr0_W Translation initiation 42.6 20 0.0007 21.3 2.8 14 75-88 45-58 (71)
18 1q90_R Cytochrome B6-F complex 40.8 48 0.0016 18.6 4.8 31 13-43 8-38 (49)
19 4dov_A ORC1, origin recognitio 39.8 22 0.00074 25.1 2.9 18 54-72 32-49 (163)
20 1pi7_A VPU protein, U ORF prot 36.7 49 0.0017 17.5 3.6 20 23-42 8-27 (36)
21 3mt1_A Putative carboxynorsper 33.8 38 0.0013 25.9 3.7 30 60-89 293-322 (365)
22 1wzo_A HPCE; structural genomi 33.3 53 0.0018 23.9 4.3 38 61-99 204-243 (246)
23 4dbf_A 2-hydroxyhepta-2,4-dien 32.6 61 0.0021 24.6 4.6 39 60-99 246-286 (288)
24 2oqk_A Putative translation in 31.9 34 0.0012 22.5 2.7 38 51-88 39-82 (117)
25 3p8d_A Medulloblastoma antigen 31.3 27 0.00092 21.0 1.9 15 57-71 2-16 (67)
26 1yel_A AT1G16640; CESG, protei 29.6 41 0.0014 21.0 2.8 17 75-91 76-92 (104)
27 3s52_A Putative fumarylacetoac 29.6 28 0.00095 25.2 2.2 30 60-89 182-213 (221)
28 3iuw_A Activating signal coint 29.1 79 0.0027 19.7 3.9 29 73-101 34-66 (83)
29 2wqt_A 2-keto-4-pentenoate hyd 28.3 53 0.0018 24.3 3.6 30 61-90 222-253 (270)
30 3n29_A Carboxynorspermidine de 28.1 52 0.0018 25.9 3.7 30 60-89 347-376 (418)
31 2dfu_A Probable 2-hydroxyhepta 27.8 84 0.0029 23.2 4.6 40 60-100 217-258 (264)
32 2j66_A BTRK, decarboxylase; bu 27.4 46 0.0016 25.8 3.2 29 61-89 345-373 (428)
33 2cqa_A RUVB-like 2; TIP48, TIP 27.4 11 0.00038 24.4 -0.3 43 53-98 39-81 (95)
34 2k1g_A Lipoprotein SPR; soluti 26.2 32 0.0011 23.1 1.8 14 75-88 66-79 (135)
35 3rr6_A Putative uncharacterize 25.7 61 0.0021 24.2 3.5 38 61-99 222-261 (265)
36 1ah9_A IF1, initiation factor 25.5 25 0.00084 20.8 1.0 26 63-88 26-57 (71)
37 2q18_X 2-keto-3-deoxy-D-arabin 24.9 91 0.0031 23.3 4.4 39 60-99 244-287 (293)
38 2ja9_A Exosome complex exonucl 24.4 47 0.0016 23.3 2.5 17 56-72 46-62 (175)
39 3khs_A Purine nucleoside phosp 24.2 29 0.00098 26.3 1.4 20 53-72 112-131 (285)
40 3fuc_A Purine nucleoside phosp 24.1 29 0.00099 26.2 1.4 20 53-72 115-134 (284)
41 2jyx_A Lipoprotein SPR; soluti 24.1 44 0.0015 22.1 2.2 14 75-88 66-79 (136)
42 1lgp_A Cell cycle checkpoint p 24.0 45 0.0016 21.1 2.2 37 51-88 60-96 (116)
43 2lkt_A Retinoic acid receptor 23.9 50 0.0017 21.3 2.4 11 76-86 7-17 (125)
44 1qe5_A Pentosyltransferase; en 23.7 30 0.001 25.8 1.4 20 53-72 118-137 (266)
45 2qgh_A Diaminopimelate decarbo 23.6 64 0.0022 25.0 3.4 30 60-89 347-376 (425)
46 3l53_A Putative fumarylacetoac 23.3 36 0.0012 24.7 1.7 29 60-88 180-210 (224)
47 1g2o_A Purine nucleoside phosp 23.3 31 0.001 25.8 1.4 20 53-72 119-138 (268)
48 1ueb_A EF-P, TT0860, elongatio 22.7 82 0.0028 22.2 3.5 39 55-98 145-184 (184)
49 1ybf_A AMP nucleosidase; struc 22.7 50 0.0017 24.2 2.5 18 55-72 97-114 (268)
50 1yby_A Translation elongation 22.6 80 0.0027 23.0 3.5 38 56-98 177-215 (215)
51 3oyy_A EF-P, elongation factor 22.5 82 0.0028 22.4 3.5 37 57-98 152-189 (191)
52 3vab_A Diaminopimelate decarbo 22.4 66 0.0022 25.4 3.3 30 60-89 366-395 (443)
53 3odg_A Xanthosine phosphorylas 22.4 33 0.0011 26.0 1.4 19 54-72 125-143 (287)
54 1vmk_A Purine nucleoside phosp 22.4 33 0.0011 25.8 1.4 20 53-72 122-141 (277)
55 3r6o_A 2-hydroxyhepta-2,4-dien 22.2 1.4E+02 0.0049 23.0 5.1 40 61-101 273-321 (329)
56 2eqk_A Tudor domain-containing 22.2 1.5E+02 0.0051 18.5 4.3 30 75-104 20-49 (85)
57 2pp6_A Gifsy-2 prophage ATP-bi 22.2 80 0.0027 20.5 3.1 43 57-104 44-88 (102)
58 7odc_A Protein (ornithine deca 22.0 60 0.002 25.4 2.9 30 60-89 358-387 (424)
59 1twi_A Diaminopimelate decarbo 22.0 70 0.0024 24.8 3.3 30 60-89 356-385 (434)
60 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 21.9 40 0.0014 24.9 1.8 29 61-89 228-258 (267)
61 4i1k_A B3 domain-containing tr 21.1 99 0.0034 20.8 3.6 16 75-90 115-130 (146)
62 3btn_A Antizyme inhibitor 1; T 20.5 63 0.0022 25.5 2.8 28 62-89 358-385 (448)
63 2if6_A Hypothetical protein YI 20.3 48 0.0016 22.9 1.8 12 61-72 4-15 (186)
64 1f3t_A ODC, ornithine decarbox 20.2 69 0.0023 24.9 2.9 30 60-89 358-387 (425)
65 3phb_E Purine nucleoside phosp 20.0 39 0.0013 26.2 1.4 19 54-72 151-169 (324)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.60 E-value=4.2e-16 Score=118.30 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=49.2
Q ss_pred eEEEeCCCCcccccCCCEEEEeec---------------CCCCCcCcEEEEEeCCC-CCCEEEEEEEeCCC
Q 033421 50 VVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER 104 (119)
Q Consensus 50 ~~~V~g~SM~Pti~~GD~vlv~~~---------------~~~~~~GDIVvf~~~~~-~~~~ikRVi~~~gd 104 (119)
++.|+|+||+|||++||.|+++|. ..++++||||+|+.|.. ...+||||+|+|||
T Consensus 8 ~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD 78 (248)
T 1b12_A 8 PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGD 78 (248)
T ss_dssp EEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTC
T ss_pred EEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCC
Confidence 699999999999999999999984 25799999999998754 35799999999999
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.11 E-value=3.1e-10 Score=76.18 Aligned_cols=51 Identities=18% Similarity=0.391 Sum_probs=44.3
Q ss_pred eEEEeCCCCc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeC
Q 033421 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102 (119)
Q Consensus 50 ~~~V~g~SM~------Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 102 (119)
.+.|.|+||+ |+|++||+|++++. ..++.||+|+++.++ ++.++||++..+
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~ 71 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFKKLIRDS 71 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECST-TCEEEEEEEEET
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC-CcCCCCCEEEEEECC-CeEEEEEEEEeC
Confidence 5789999999 99999999999985 459999999999876 347999999753
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.10 E-value=1.9e-10 Score=77.49 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=43.5
Q ss_pred eEEEeCCCCcc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeC
Q 033421 50 VVVVLSGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102 (119)
Q Consensus 50 ~~~V~g~SM~P-ti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 102 (119)
.+.|.|+||+| +|++||++++++. ..++.||++++..++ +.++||+...+
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~gdivv~~~~~--~~~vKr~~~~~ 79 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLRP 79 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETT--EEEEEEEECSS
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcC-CCCCCCCEEEEEECC--EEEEEEEEeCC
Confidence 57899999999 8999999999985 458999999999875 47999998743
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.98 E-value=2.1e-09 Score=74.15 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=44.2
Q ss_pred eEEEeCCCCc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeC
Q 033421 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVH 102 (119)
Q Consensus 50 ~~~V~g~SM~------Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~ 102 (119)
.+.|.|+||+ |+|++||+|++++. ..++.||+|++..++ ++.++||++..+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~ 102 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFAKLIRDS 102 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT-SCCCTTSEEEEEETT-TEEEEEEEEEET
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC-CCCCCCCEEEEEECC-CEEEEEEEEEeC
Confidence 5789999999 99999999999985 468999999999876 347999998643
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.91 E-value=3.8e-09 Score=76.73 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=43.3
Q ss_pred eEEEeCCCCccc-ccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeCCC
Q 033421 50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER 104 (119)
Q Consensus 50 ~~~V~g~SM~Pt-i~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~gd 104 (119)
.+.|.|+||+|+ |++||+|++++. .+++.||++++..++ ..++||+. .+++
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~G~i~v~~~~~--~~~vKrl~-~~~~ 163 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDD--EVTVKRLK-KQGN 163 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETT--EEEEEEEE-EETT
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc-CCcCCCeEEEEEECC--EEEEEEEE-EeCC
Confidence 577899999999 999999999985 468999999999864 47999998 4554
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.62 E-value=6.4e-08 Score=71.23 Aligned_cols=52 Identities=17% Similarity=0.357 Sum_probs=43.5
Q ss_pred eEEEeCCCCc------ccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeCC
Q 033421 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHE 103 (119)
Q Consensus 50 ~~~V~g~SM~------Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~g 103 (119)
.+.|.|+||+ |+|++||+|++++. ..++.||++++..++. ..++||+...+|
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~-~~~~~g~ivv~~~~~~-~~~vKrl~~~~~ 199 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGGD-EFTFKKLIRGSG 199 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS-SCCCTTSEEEEESTTT-CCCCEEEECCSS
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC-CCCCCCcEEEEEECCC-eEEEEEEEEcCC
Confidence 4689999999 99999999999985 4689999999987533 478999987443
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.59 E-value=2e-07 Score=67.64 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=43.6
Q ss_pred eEEEeCCCC-cccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeCC
Q 033421 50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHE 103 (119)
Q Consensus 50 ~~~V~g~SM-~Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~g 103 (119)
.+.|.|+|| +|+|.+||+|++++. ..++.||+|++..++ +.++||+.-.+|
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~-~~~~~G~ivv~~~~~--~~~vKr~~~~~~ 162 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ-DWAQNGDIVAAMVDG--EVTLAKFYQRGD 162 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTCEEEEEETT--EEEEEEEEEETT
T ss_pred EEEEeCCCcCCCCCCCCCEEEEecc-CcCCCCCEEEEEECC--cEEEEEEEEECC
Confidence 578999999 699999999999985 568999999999875 479999976433
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.20 E-value=0.01 Score=41.63 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=36.2
Q ss_pred CCCcccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeCCC
Q 033421 56 GSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER 104 (119)
Q Consensus 56 ~SM~Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~gd 104 (119)
++|.+.-++||+|+|++. .+..|+++++..++ ..++||+.-.+++
T Consensus 113 ~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~ 157 (189)
T 2fjr_A 113 TDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR 157 (189)
T ss_dssp SSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT
T ss_pred CCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC
Confidence 456665689999999986 47889999998876 3699999887664
No 9
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=72.20 E-value=1.4 Score=27.58 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=16.0
Q ss_pred ccCCCEEEEee------cCCCCCcCcEEEEEeC
Q 033421 62 FKRGDILFLHM------SKDPIRAGEIVVFNVD 88 (119)
Q Consensus 62 i~~GD~vlv~~------~~~~~~~GDIVvf~~~ 88 (119)
+.+|..+...- ..-.+.+||.|.+...
T Consensus 33 l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 33 LENGHKVLAHISGKMRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp ETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEE
T ss_pred eCCCCEEEEEeCcceecCCccCCCCCEEEEEEC
Confidence 34565666543 1234778888887653
No 10
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=65.67 E-value=2.6 Score=27.60 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=5.9
Q ss_pred CCcCcEEEEE
Q 033421 77 IRAGEIVVFN 86 (119)
Q Consensus 77 ~~~GDIVvf~ 86 (119)
+.+||.|+..
T Consensus 59 I~~GD~VlVe 68 (102)
T 1jt8_A 59 VREGDVVIVK 68 (102)
T ss_dssp CCSCEEEEEC
T ss_pred ecCCCEEEEE
Confidence 5566666664
No 11
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=64.22 E-value=24 Score=24.93 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCCcccccC---CCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 13 SLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKR---GDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 13 ~~~~~~i~~~i~~i~~~i~i~~li~~~~~~~~~~~~~~~~V~g~SM~Pti~~---GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
.+..|+++..+...+.++..+.+++.++-. |.|.-.. + .+-++ ..+++.|+.+.++-.+
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~---------------~~p~~~~~a~~-~v~v~--ls~l~~G~~~~v~~~g 69 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVATGAAVWPLINQ---------------MNPSADVQALA-SIFVD--VSSVEPGVQLTVKFLG 69 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TSCCTTTSCCC-CEEEE--CTTCCTTEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCchhhcccc-cEEEE--HHHCCCCCeEEEEECC
Confidence 356777777665555555444455544432 3343321 3 23342 4678899999998777
Q ss_pred CCCCEEEE
Q 033421 90 REIPIVHR 97 (119)
Q Consensus 90 ~~~~~ikR 97 (119)
+. .+|-|
T Consensus 70 ~p-v~i~r 76 (187)
T 2qjy_C 70 KP-IFIRR 76 (187)
T ss_dssp EE-EEEEE
T ss_pred EE-EEEEE
Confidence 65 34433
No 12
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.74 E-value=5.5 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=13.1
Q ss_pred ccCCCEEEEeec-----CCCCCcCcEEEEEe
Q 033421 62 FKRGDILFLHMS-----KDPIRAGEIVVFNV 87 (119)
Q Consensus 62 i~~GD~vlv~~~-----~~~~~~GDIVvf~~ 87 (119)
+.+|..+++.-. .--+.+||.|+...
T Consensus 34 l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 34 TAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp CTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred eCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 345665655421 11255666666653
No 13
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=58.85 E-value=13 Score=25.71 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=20.8
Q ss_pred CCCcccc--cCCCEEEEeecCCCCCcCcEEEEE
Q 033421 56 GSMEPGF--KRGDILFLHMSKDPIRAGEIVVFN 86 (119)
Q Consensus 56 ~SM~Pti--~~GD~vlv~~~~~~~~~GDIVvf~ 86 (119)
+.|.-.+ ..||.|+|.....+..+|+|+--.
T Consensus 62 GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 62 GKLRKKVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp SGGGGSCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred ccceeeEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 3444444 588888888765567778887554
No 14
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=54.70 E-value=21 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=22.2
Q ss_pred cccccCCCEEEEee---cCCCCCcCcEEEEEeCCC-CCCEEEEEEEeCCC
Q 033421 59 EPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVHER 104 (119)
Q Consensus 59 ~Pti~~GD~vlv~~---~~~~~~~GDIVvf~~~~~-~~~~ikRVi~~~gd 104 (119)
+|-...+++.+.+. ....++.||-|.++.++. ..++|.||..+-.+
T Consensus 6 ~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~ 55 (174)
T 1w4s_A 6 SAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWED 55 (174)
T ss_dssp --------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEEC
T ss_pred CccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEc
Confidence 36666666665543 235688899998887653 45789999887654
No 15
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=48.33 E-value=68 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=16.8
Q ss_pred CCCEEEEeecCCCCCcCcEEEEEeCCCC
Q 033421 64 RGDILFLHMSKDPIRAGEIVVFNVDGRE 91 (119)
Q Consensus 64 ~GD~vlv~~~~~~~~~GDIVvf~~~~~~ 91 (119)
....+-++ ..+++.|+.+.++-.++.
T Consensus 60 a~~~v~V~--~s~l~~G~~~~v~~~g~p 85 (185)
T 3cx5_E 60 AMAKVEVN--LAAIPLGKNVVVKWQGKP 85 (185)
T ss_dssp CCCCEEEE--GGGCCTTCEEEEEETTEE
T ss_pred ccCcEEEE--HHHCCCCCeEEEEECCeE
Confidence 34555553 355778888888777655
No 16
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.65 E-value=21 Score=22.46 Aligned_cols=44 Identities=25% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCCcccccCCCEEEEeec----CCCCCcCcEEEEEeCC-CCCCEEEEE
Q 033421 55 SGSMEPGFKRGDILFLHMS----KDPIRAGEIVVFNVDG-REIPIVHRV 98 (119)
Q Consensus 55 g~SM~Pti~~GD~vlv~~~----~~~~~~GDIVvf~~~~-~~~~~ikRV 98 (119)
++|=.|++..|+.|++... ........|+-.+... ...+|||.+
T Consensus 3 ~~~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~ 51 (87)
T 2eko_A 3 SGSSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYI 51 (87)
T ss_dssp CCCSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEEC
T ss_pred cccccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeC
Confidence 4577789999999999762 2334556666665432 235677753
No 17
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=42.55 E-value=20 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=10.0
Q ss_pred CCCCcCcEEEEEeC
Q 033421 75 DPIRAGEIVVFNVD 88 (119)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (119)
-.+.+||.|.+...
T Consensus 45 i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 45 IRILPGDRVVVEIT 58 (71)
T ss_dssp CCCCTTCEEEEECC
T ss_pred cCCCCCCEEEEEEE
Confidence 34678888888743
No 18
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=40.80 E-value=48 Score=18.63 Aligned_cols=31 Identities=6% Similarity=0.003 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033421 13 SLQIRQVLTQGVSLGMIVTSALIIWKALMCI 43 (119)
Q Consensus 13 ~~~~~~i~~~i~~i~~~i~i~~li~~~~~~~ 43 (119)
.|.+|++++++..-+.++..+.++..++..+
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4788999999887666666555555555543
No 19
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=39.77 E-value=22 Score=25.14 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=10.4
Q ss_pred eCCCCcccccCCCEEEEee
Q 033421 54 LSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 54 ~g~SM~Pti~~GD~vlv~~ 72 (119)
+|.| +=+++.||.|+++.
T Consensus 32 ~~~~-~~~i~vGd~VLI~~ 49 (163)
T 4dov_A 32 NDGS-EIHIKVGQFVLIQG 49 (163)
T ss_dssp TTSC-EEEEETTCEEEECC
T ss_pred CCCC-CeEEeeCCEEEEeC
Confidence 3445 55666666666644
No 20
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=36.66 E-value=49 Score=17.47 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033421 23 GVSLGMIVTSALIIWKALMC 42 (119)
Q Consensus 23 i~~i~~~i~i~~li~~~~~~ 42 (119)
+..+.++++++.++|.+++.
T Consensus 8 ivalivalIiaIVVWtiv~i 27 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777664
No 21
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=33.85 E-value=38 Score=25.93 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=21.5
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..||.+.-++...++++||.++|..-+
T Consensus 293 p~C~s~D~l~~~~~~~~l~~GD~l~~~~~G 322 (365)
T 3mt1_A 293 KSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
T ss_dssp SSCCSSCEEEEEEESSCCCTTCEEEESSCC
T ss_pred CCCCccCEEcccccCCCCCCCCEEEEeccc
Confidence 555678887644444568999999997544
No 22
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=33.35 E-value=53 Score=23.87 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=25.5
Q ss_pred cccCCCEEEEeec--CCCCCcCcEEEEEeCCCCCCEEEEEE
Q 033421 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDGREIPIVHRVI 99 (119)
Q Consensus 61 ti~~GD~vlv~~~--~~~~~~GDIVvf~~~~~~~~~ikRVi 99 (119)
||++||+++.-.. ...++.||.|.....+-. .+..+|.
T Consensus 204 tL~pGDvI~TGTp~gvg~l~~GD~v~~~i~glG-~l~~~v~ 243 (246)
T 1wzo_A 204 TLEPYDVLLTGTPKGISQVRPGDVMRLEIEGLG-ALENPIE 243 (246)
T ss_dssp CBCTTCEEECCCCCCSCEECTTCEEEEEETTSC-EEEEEEE
T ss_pred CcCCCCEEEeCCCCCceECCCCCEEEEEEcCcE-EEEEEEE
Confidence 7899998876432 234788999988876543 3444554
No 23
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=32.55 E-value=61 Score=24.56 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=26.8
Q ss_pred ccccCCCEEEEeec--CCCCCcCcEEEEEeCCCCCCEEEEEE
Q 033421 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVDGREIPIVHRVI 99 (119)
Q Consensus 60 Pti~~GD~vlv~~~--~~~~~~GDIVvf~~~~~~~~~ikRVi 99 (119)
=||++||+++.--. ...+++||.|.....+-. ....+|+
T Consensus 246 ~tL~pGDvI~TGTP~Gvg~l~~GD~v~v~iegiG-~L~n~v~ 286 (288)
T 4dbf_A 246 MTLLPGDVIATGSPAGTEAMVDGDYIEIEIPGIG-KLGNPVV 286 (288)
T ss_dssp SCBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CCcCCCCEEEcCCCCCCeecCCCCEEEEEECCcE-EEEEEEE
Confidence 48999999987542 345899999998877643 2444443
No 24
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=31.91 E-value=34 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEeCCCCccc-ccCCCEEEEeec-----CCCCCcCcEEEEEeC
Q 033421 51 VVVLSGSMEPG-FKRGDILFLHMS-----KDPIRAGEIVVFNVD 88 (119)
Q Consensus 51 ~~V~g~SM~Pt-i~~GD~vlv~~~-----~~~~~~GDIVvf~~~ 88 (119)
+...|++|.=. +.+|..+++.-. .-.+.+||.|.+...
T Consensus 39 i~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 39 QRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred EEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 33444444433 456766666531 223668888888754
No 25
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=31.34 E-value=27 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=10.7
Q ss_pred CCcccccCCCEEEEe
Q 033421 57 SMEPGFKRGDILFLH 71 (119)
Q Consensus 57 SM~Pti~~GD~vlv~ 71 (119)
-|-|.++.||.|++.
T Consensus 2 ~~~~~~~vGd~vmAr 16 (67)
T 3p8d_A 2 HMSSEFQINEQVLAC 16 (67)
T ss_dssp ---CCCCTTCEEEEE
T ss_pred CcCcccccCCEEEEE
Confidence 588999999999984
No 26
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=29.65 E-value=41 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCCCcCcEEEEEeCCCC
Q 033421 75 DPIRAGEIVVFNVDGRE 91 (119)
Q Consensus 75 ~~~~~GDIVvf~~~~~~ 91 (119)
++++.||+++|+..+..
T Consensus 76 ~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HTCCTTCEEEEEECSSS
T ss_pred cCCCCCCEEEEEEcCCC
Confidence 57999999999987654
No 27
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=29.58 E-value=28 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=19.4
Q ss_pred ccccCCCEEEEeec--CCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~--~~~~~~GDIVvf~~~~ 89 (119)
=||++||+++.--. ...++.||.|.....+
T Consensus 182 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~g 213 (221)
T 3s52_A 182 FTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNG 213 (221)
T ss_dssp SCBCTTCEEECCCCSCCEEECTTCEEEEEETT
T ss_pred CCcCCCCEEEeCCCCcceecCCCCEEEEEEeC
Confidence 36788888876431 2236778887776654
No 28
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=29.09 E-value=79 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=17.8
Q ss_pred cCCCCCcCcEEEEEeC--CC--CCCEEEEEEEe
Q 033421 73 SKDPIRAGEIVVFNVD--GR--EIPIVHRVIKV 101 (119)
Q Consensus 73 ~~~~~~~GDIVvf~~~--~~--~~~~ikRVi~~ 101 (119)
+.++++.||++.|..= +. .+....||..+
T Consensus 34 nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 34 NDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp CCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 4466999999998632 21 12345566666
No 29
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=28.33 E-value=53 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.4
Q ss_pred cccCCCEEEEeec--CCCCCcCcEEEEEeCCC
Q 033421 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDGR 90 (119)
Q Consensus 61 ti~~GD~vlv~~~--~~~~~~GDIVvf~~~~~ 90 (119)
||++||+|+.--. ...+++||.|.....+-
T Consensus 222 tL~~GdvI~TGT~~g~~~l~~GD~v~~~i~gl 253 (270)
T 2wqt_A 222 PLRTGDIILTGALGPMVAVNAGDRFEAHIEGI 253 (270)
T ss_dssp CBCTTCEEEEEESSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCCeeCCCCCEEEEEEcCC
Confidence 7999999998652 34588999999887764
No 30
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=28.08 E-value=52 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=21.7
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..||.+.-.+...++++||.++|..-+
T Consensus 347 p~C~s~D~l~~~~~~~~l~~GD~l~~~~~G 376 (418)
T 3n29_A 347 NTCLAGDVMGEYAFDKKLKIGDKIVFLDQI 376 (418)
T ss_dssp SSSCTTCEEEEEEESSCCCTTCEEEESSCS
T ss_pred CCCCCCCEEeecccCCCCCCCCEEEEeCcc
Confidence 566778888644445568999999997544
No 31
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=27.81 E-value=84 Score=23.24 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=27.5
Q ss_pred ccccCCCEEEEeec--CCCCCcCcEEEEEeCCCCCCEEEEEEE
Q 033421 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVDGREIPIVHRVIK 100 (119)
Q Consensus 60 Pti~~GD~vlv~~~--~~~~~~GDIVvf~~~~~~~~~ikRVi~ 100 (119)
=||++||+++.-.. ...++.||.|.....+-. ....+|.+
T Consensus 217 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~glG-~l~~~v~~ 258 (264)
T 2dfu_A 217 MTLEPLDVVLTGTPEGVGALRPGDRLEVAVEGVG-TLFTLIGP 258 (264)
T ss_dssp SCBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEEE
T ss_pred CCcCCCCEEEeCCCCCccccCCCCEEEEEEeCcE-EEEEEEEe
Confidence 37899998886442 345899999999887643 34555553
No 32
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=27.41 E-value=46 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=19.4
Q ss_pred cccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 61 GFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 61 ti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
+=..||.+..+....+++.||.|+|..-+
T Consensus 345 ~C~s~D~l~~d~~lp~~~~GD~l~~~~~G 373 (428)
T 2j66_A 345 LCTPEDCLGKDVHVPALYPGDLVCVLNSG 373 (428)
T ss_dssp SSSTTCEEEEEEEESCCCTTCEEEESSCS
T ss_pred CCCCCcEEEecccCCCCCCCCEEEEeCCC
Confidence 33466777766533468999999997443
No 33
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=27.40 E-value=11 Score=24.36 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=23.6
Q ss_pred EeCCCCcccccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEE
Q 033421 53 VLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (119)
+.+..|+-+|.-|..+.-+-....++.||||-...+.. -++|+
T Consensus 39 LkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG---~V~kl 81 (95)
T 2cqa_A 39 LKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATG---KISKL 81 (95)
T ss_dssp EECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTT---EEEEE
T ss_pred EEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCC---EEEEE
Confidence 34444444444333222211236799999999987654 35554
No 34
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=26.17 E-value=32 Score=23.10 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=9.4
Q ss_pred CCCCcCcEEEEEeC
Q 033421 75 DPIRAGEIVVFNVD 88 (119)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (119)
+++++||+|.|+.+
T Consensus 66 ~~l~pGDLvFf~~~ 79 (135)
T 2k1g_A 66 SNLRTGDLVLFRAG 79 (135)
T ss_dssp GGCCTTEEEEEEET
T ss_pred HHccCCcEEEECCC
Confidence 45677777777654
No 35
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=25.66 E-value=61 Score=24.19 Aligned_cols=38 Identities=21% Similarity=0.453 Sum_probs=25.2
Q ss_pred cccCCCEEEEeec--CCCCCcCcEEEEEeCCCCCCEEEEEE
Q 033421 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDGREIPIVHRVI 99 (119)
Q Consensus 61 ti~~GD~vlv~~~--~~~~~~GDIVvf~~~~~~~~~ikRVi 99 (119)
||++||+++.-.. ...+++||.|.....+-. ....+|.
T Consensus 222 tL~pGDvI~TGTp~Gvg~l~~GD~v~v~i~giG-~l~n~v~ 261 (265)
T 3rr6_A 222 TLLPGDVILTGTPEGVGPIVDGDTVSVTIEGIG-TLSNPVV 261 (265)
T ss_dssp CBCTTCEEECCCCSCCEECCTTCEEEEEETTTE-EEEEEEE
T ss_pred CcCCCCEEEeCCCCCceeCCCCCEEEEEECCcE-EEEEEEE
Confidence 7889998887542 234788999988876543 2444443
No 36
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=25.47 E-value=25 Score=20.84 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=17.0
Q ss_pred cCCCEEEEeec------CCCCCcCcEEEEEeC
Q 033421 63 KRGDILFLHMS------KDPIRAGEIVVFNVD 88 (119)
Q Consensus 63 ~~GD~vlv~~~------~~~~~~GDIVvf~~~ 88 (119)
.+|..+.+.-. .-.+.+||.|.+...
T Consensus 26 ~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 26 ENGHVVTAHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp TTSCEEEEEECSSGGGTTCCCCTTCEECCEEC
T ss_pred CCCCEEEEEEcceEeccCccCCCCCEEEEEEe
Confidence 46777766531 234678999999753
No 37
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=24.88 E-value=91 Score=23.28 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=24.9
Q ss_pred ccccCCCEEEEee---c--CCCCCcCcEEEEEeCCCCCCEEEEEE
Q 033421 60 PGFKRGDILFLHM---S--KDPIRAGEIVVFNVDGREIPIVHRVI 99 (119)
Q Consensus 60 Pti~~GD~vlv~~---~--~~~~~~GDIVvf~~~~~~~~~ikRVi 99 (119)
-||++||+++.-- . ...++.||.|.....+-. ....+|.
T Consensus 244 ~tL~pGDvI~TGTg~~p~~~~~l~~GD~v~~~i~glG-~l~n~v~ 287 (293)
T 2q18_X 244 NPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIG-TLITPVK 287 (293)
T ss_dssp CCCCTTEEEECCCSCCCCTTCCCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CCCCCCCEEECCCCCCCCCCcccCCCCEEEEEEcCcE-EEEEEEE
Confidence 3678888887633 1 245788998888876542 3444554
No 38
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=24.39 E-value=47 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=14.4
Q ss_pred CCCcccccCCCEEEEee
Q 033421 56 GSMEPGFKRGDILFLHM 72 (119)
Q Consensus 56 ~SM~Pti~~GD~vlv~~ 72 (119)
..|.|.|+.||+|.+.-
T Consensus 46 k~~r~~l~~GDlV~ArV 62 (175)
T 2ja9_A 46 KKNRPTLQVGDLVYARV 62 (175)
T ss_dssp SSSCCCCCTTCEEEEEE
T ss_pred hhhhccCCCCCEEEEEE
Confidence 57999999999999754
No 39
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=24.25 E-value=29 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=17.0
Q ss_pred EeCCCCcccccCCCEEEEee
Q 033421 53 VLSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~ 72 (119)
=.-+|+.|.+++||+|+.+.
T Consensus 112 gaaGgl~~~~~~GDlVi~~d 131 (285)
T 3khs_A 112 NAAGGLNPSYRPGDFMVVRD 131 (285)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEeehh
Confidence 34469999999999999875
No 40
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=24.12 E-value=29 Score=26.25 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=16.9
Q ss_pred EeCCCCcccccCCCEEEEee
Q 033421 53 VLSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~ 72 (119)
=.-+|+.|.+++||+|+.+.
T Consensus 115 gaaGgl~~~~~~GDlVi~~d 134 (284)
T 3fuc_A 115 NAAGGLNPNFEVGDIMLIRD 134 (284)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEehH
Confidence 33469999999999999865
No 41
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=24.05 E-value=44 Score=22.08 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=9.5
Q ss_pred CCCCcCcEEEEEeC
Q 033421 75 DPIRAGEIVVFNVD 88 (119)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (119)
.++++||+|.|+..
T Consensus 66 ~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 66 SNLRTGDLVLFRAG 79 (136)
T ss_dssp TTCCTTEEEEEECS
T ss_pred HhCCCCCEEEECCC
Confidence 56777777777653
No 42
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=24.05 E-value=45 Score=21.06 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=25.9
Q ss_pred EEEeCCCCcccccCCCEEEEeecCCCCCcCcEEEEEeC
Q 033421 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVD 88 (119)
Q Consensus 51 ~~V~g~SM~Pti~~GD~vlv~~~~~~~~~GDIVvf~~~ 88 (119)
+.+..+|...|+-+|..+--.. ...++.||+|.+-.+
T Consensus 60 ~~l~D~S~NGt~vng~~l~~~~-~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 60 VTLEDTSTSGTVINKLKVVKKQ-TCPLQTGDVIYLVYR 96 (116)
T ss_dssp EEEEECSSSCCCCCCCCCCCSS-CCCCCTTCEEEEECC
T ss_pred EEEEECCcCCcEECCEEcCCCC-cEECCCCCEEEEecc
Confidence 4444489999998887553222 356899999999754
No 43
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=23.89 E-value=50 Score=21.33 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=5.3
Q ss_pred CCCcCcEEEEE
Q 033421 76 PIRAGEIVVFN 86 (119)
Q Consensus 76 ~~~~GDIVvf~ 86 (119)
+|++||+|.+.
T Consensus 7 ep~pGDlI~~~ 17 (125)
T 2lkt_A 7 EPKPGDLIEIF 17 (125)
T ss_dssp CCCTTCEEEEE
T ss_pred CCCCCCEEEEe
Confidence 34555555443
No 44
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=23.67 E-value=30 Score=25.81 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.2
Q ss_pred EeCCCCcccccCCCEEEEee
Q 033421 53 VLSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~ 72 (119)
=.-+|+.|.+++||+|+.+.
T Consensus 118 gaaG~l~~~l~~GDlVi~~d 137 (266)
T 1qe5_A 118 NGCGGLNQEWGAGTPVLLSD 137 (266)
T ss_dssp EEEEECCTTSCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEEhH
Confidence 34569999999999999986
No 45
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=23.59 E-value=64 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=21.3
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..+|.+..+....+++.||.|+|...+
T Consensus 347 ~~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 376 (425)
T 2qgh_A 347 PVCESSDTFLKDAHLPELEPGDKIAIEKVG 376 (425)
T ss_dssp SSSSTTCEEEEEEEECCCCTTCEEEECSCS
T ss_pred CCcCCCcEecccccCCCCCCCCEEEEeCCC
Confidence 444577888887643468999999996443
No 46
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=23.31 E-value=36 Score=24.68 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=19.5
Q ss_pred ccccCCCEEEEeec--CCCCCcCcEEEEEeC
Q 033421 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVD 88 (119)
Q Consensus 60 Pti~~GD~vlv~~~--~~~~~~GDIVvf~~~ 88 (119)
=||++||+++.-.. ...++.||.|.....
T Consensus 180 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~ 210 (224)
T 3l53_A 180 FSLQPGDVILTGTPAGVGPLEVGDSLSAKLS 210 (224)
T ss_dssp SCBCTTCEEECCCCSCCEECCTTCEEEEEEE
T ss_pred CCcCCCCEEEcCCCCCCEEcCCCCEEEEEEE
Confidence 47888888876442 234788888877655
No 47
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=23.29 E-value=31 Score=25.78 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=17.1
Q ss_pred EeCCCCcccccCCCEEEEee
Q 033421 53 VLSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~ 72 (119)
=.-+|+.|.+++||+|+.+.
T Consensus 119 gaaG~l~~~l~~GDlVi~~d 138 (268)
T 1g2o_A 119 NAAGGLRADLQVGQPVLISD 138 (268)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEEhH
Confidence 33469999999999999876
No 48
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=22.70 E-value=82 Score=22.24 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCCCcc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEE
Q 033421 55 SGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (119)
Q Consensus 55 g~SM~P-ti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (119)
++++.| |++.|=.|-|- .-++.||.|..+....+ |+.|+
T Consensus 145 ~~~~KpA~letG~~v~VP---~fi~~Gd~I~vdT~~g~--Y~~R~ 184 (184)
T 1ueb_A 145 SGGSKPATLETGAVVQVP---LFVEPGEVIKVDTRTGE--YVGRA 184 (184)
T ss_dssp SCSEEEEEETTSCEEEEE---TTCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCCccEEEcCCCEEEeC---CcCcCCCEEEEECCCCe--EeccC
Confidence 345555 45677777663 34899999999876554 88885
No 49
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=22.66 E-value=50 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=16.6
Q ss_pred CCCCcccccCCCEEEEee
Q 033421 55 SGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 55 g~SM~Pti~~GD~vlv~~ 72 (119)
.+++.|.++.||+|+.+.
T Consensus 97 aGgl~~~i~~GDvVi~~~ 114 (268)
T 1ybf_A 97 CGGLKLENALGDYLLPIA 114 (268)
T ss_dssp ECCSSCTTCTTCEEEEEE
T ss_pred eecCCCCCCCCcEEEEhh
Confidence 589999999999999986
No 50
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=22.63 E-value=80 Score=22.98 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCcc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEE
Q 033421 56 GSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (119)
Q Consensus 56 ~SM~P-ti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (119)
++..| |++.|=.|-|- .-++.||.|..+....+ |+.|+
T Consensus 177 ~~~KpA~leTG~~v~VP---~FI~~Gd~I~VdT~~g~--Y~~R~ 215 (215)
T 1yby_A 177 GATKPAIVETGASIKVP---LFVNKGDIIRIDTRTGE--YMERV 215 (215)
T ss_dssp CCEEEEEETTSCEEEEE---TTCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCccEEEeCCcEEEeC---CcEeCCCEEEEECCCCe--EeccC
Confidence 34555 45677777773 34899999999876554 88885
No 51
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=22.54 E-value=82 Score=22.41 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCcc-cccCCCEEEEeecCCCCCcCcEEEEEeCCCCCCEEEEE
Q 033421 57 SMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (119)
Q Consensus 57 SM~P-ti~~GD~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (119)
++.| +++.|-.|-|- .-++.||.|..+....+ |+.|+
T Consensus 152 ~~KpA~letG~~v~VP---~fi~~Gd~I~VdT~~g~--Y~~R~ 189 (191)
T 3oyy_A 152 VMKTARLNNGAELQVS---AFCEIGDSIEIDTRTGE--YKSRV 189 (191)
T ss_dssp CEEEEEETTSCEEEEE---TTCCTTCEEEEETTTTE--EEEEC
T ss_pred CCceEEEeCCCEEEeC---CeeeCCCEEEEECCCCe--Ehhhc
Confidence 4555 45577766663 34899999999866554 99997
No 52
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=22.42 E-value=66 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=20.8
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..||.+.-+....++++||.++|..-+
T Consensus 366 p~C~s~D~l~~~~~lp~l~~GD~l~~~~~G 395 (443)
T 3vab_A 366 PVCETGDYLGLDREVAKPAPGDLIAICTTG 395 (443)
T ss_dssp SSSSTTCEEEEEEEEECCCTTCEEEEESCT
T ss_pred cCCCCCCEEeeccCcCCCCCCCEEEEeCCC
Confidence 555667877665532358999999997554
No 53
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=22.39 E-value=33 Score=25.98 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.7
Q ss_pred eCCCCcccccCCCEEEEee
Q 033421 54 LSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 54 ~g~SM~Pti~~GD~vlv~~ 72 (119)
.-+|+.|.+++||+|+.+.
T Consensus 125 aaGgl~~~l~~GDlVi~~d 143 (287)
T 3odg_A 125 AAGSLRPEVLPGSVVMLKD 143 (287)
T ss_dssp EEEESSTTSCTTCEEEEEE
T ss_pred ceeccCCCCCCCCEEEehh
Confidence 3469999999999999876
No 54
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=22.39 E-value=33 Score=25.84 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=17.1
Q ss_pred EeCCCCcccccCCCEEEEee
Q 033421 53 VLSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 53 V~g~SM~Pti~~GD~vlv~~ 72 (119)
=.-+|+.|.+++||+|+.+.
T Consensus 122 gaaG~l~~~l~~GDlVi~~d 141 (277)
T 1vmk_A 122 NAAGAINPEFKPGEIILVRD 141 (277)
T ss_dssp EEEEECSTTCCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEEhH
Confidence 34469999999999999876
No 55
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=22.21 E-value=1.4e+02 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.3
Q ss_pred cccCCCEEEEeec---------CCCCCcCcEEEEEeCCCCCCEEEEEEEe
Q 033421 61 GFKRGDILFLHMS---------KDPIRAGEIVVFNVDGREIPIVHRVIKV 101 (119)
Q Consensus 61 ti~~GD~vlv~~~---------~~~~~~GDIVvf~~~~~~~~~ikRVi~~ 101 (119)
||++||+++.-.. ...++.||.|.....+-. .+..+|..-
T Consensus 273 tL~pGDvI~TGTp~GvG~~~~p~~~l~~GD~V~~ei~glG-~l~n~V~~~ 321 (329)
T 3r6o_A 273 ALRAGDIILTGTPGGCGFQFDPPRYLRPGDVIEAHSAKLG-KMRLPVHDE 321 (329)
T ss_dssp CBCTTCEEECCCCSCCGGGSSSCCCCCTTCEEEEEETTTE-EEEEEEEEC
T ss_pred CcCCCCEEEcCCccccCCCCCCCccCCCCCEEEEEEcCce-EEEEEEEeC
Confidence 8999999987441 125899999999887643 455666543
No 56
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.20 E-value=1.5e+02 Score=18.50 Aligned_cols=30 Identities=3% Similarity=-0.028 Sum_probs=24.2
Q ss_pred CCCCcCcEEEEEeCCCCCCEEEEEEEeCCC
Q 033421 75 DPIRAGEIVVFNVDGREIPIVHRVIKVHER 104 (119)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVi~~~gd 104 (119)
-.+++||++..+.+.+++-|=.||..+..+
T Consensus 20 ~~~k~g~~vaak~~d~n~WyRakV~~v~~~ 49 (85)
T 2eqk_A 20 VKWENDMHCAVKIQDKNQWRRGQIIRMVTD 49 (85)
T ss_dssp CCCCSSCEEEEECSSSCCEEEEEEEEECSS
T ss_pred cCccCCCEEEEEeCCCCeEEEEEEEEecCC
Confidence 458999999998877666788888888877
No 57
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=22.16 E-value=80 Score=20.53 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCcccccCCC--EEEEeecCCCCCcCcEEEEEeCCCCCCEEEEEEEeCCC
Q 033421 57 SMEPGFKRGD--ILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER 104 (119)
Q Consensus 57 SM~Pti~~GD--~vlv~~~~~~~~~GDIVvf~~~~~~~~~ikRVi~~~gd 104 (119)
-|.| -+|+ -+.+......|++||.|+++. + .+.++|---..|.
T Consensus 44 emg~--lsG~~rsLvvFSsgYrP~r~D~Vv~~G--k-~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 44 ELGP--VEGNGKNVVVFSGNVIPRRGDRVVLRG--S-EFTVTRIRRFNGK 88 (102)
T ss_dssp ----------CEEEEECCSSCCCCTTCEEEETT--E-EEEEEEEEEETTE
T ss_pred HhCC--ccCCceEEEEecCCcccCCCCEEEEcC--c-EEEEEEEEEECCc
Confidence 4556 3443 233334457799999999953 2 3677776555443
No 58
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=22.03 E-value=60 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..||.+.-+....++++||.++|..-+
T Consensus 358 p~C~s~D~l~~~~~Lp~l~~GD~l~~~~~G 387 (424)
T 7odc_A 358 PTCDGLDRIVERCNLPEMHVGDWMLFENMG 387 (424)
T ss_dssp SSSCTTCEEEEEEEEECCCTTCEEEECSCC
T ss_pred CCCCCCCEecccccCCCCCCCCEEEECCCC
Confidence 555677877655432358999999997544
No 59
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=21.96 E-value=70 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..||.+..+....+++.||.|+|...+
T Consensus 356 ~~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 385 (434)
T 1twi_A 356 GLCESSDVFGRDRELDKVEVGDVLAIFDVG 385 (434)
T ss_dssp SSSCTTCEEEEEEEEECCCTTCEEEEECCS
T ss_pred CCCCCCCEEeeccCCCCCCCCCEEEEeCCC
Confidence 344567888876532368999999996443
No 60
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=21.92 E-value=40 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=19.8
Q ss_pred cccCCCEEEEeec--CCCCCcCcEEEEEeCC
Q 033421 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDG 89 (119)
Q Consensus 61 ti~~GD~vlv~~~--~~~~~~GDIVvf~~~~ 89 (119)
||++||+|+.--. ...+++||.|.....+
T Consensus 228 tL~~GDvI~TGT~~g~~~l~~GD~v~~~i~g 258 (267)
T 2eb4_A 228 QLEAGQIILGGSFTRPVPARKGDTFHVDYGN 258 (267)
T ss_dssp CBCTTCEEECCCSSCCEECCTTCEEEEECGG
T ss_pred CCCCCCEEECCCCCCCEECCCCCEEEEEEcC
Confidence 7888888886431 2347888888776554
No 61
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=21.06 E-value=99 Score=20.78 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.6
Q ss_pred CCCCcCcEEEEEeCCC
Q 033421 75 DPIRAGEIVVFNVDGR 90 (119)
Q Consensus 75 ~~~~~GDIVvf~~~~~ 90 (119)
++++.||+++|..-+.
T Consensus 115 n~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRT 130 (146)
T ss_dssp TTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEecC
Confidence 6799999999997654
No 62
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=20.48 E-value=63 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=17.5
Q ss_pred ccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 62 FKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 62 i~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
=..||.+..+....+++.||.++|...+
T Consensus 358 C~s~D~l~~d~~lp~l~~GD~l~~~~~G 385 (448)
T 3btn_A 358 CDELDQIVESCLLPELNVGDWLIFDNMG 385 (448)
T ss_dssp CSTTCEEEEEEEEECCCTTCEEEESSCC
T ss_pred CCCCCEEeeccccCCCCCCCEEEEcCCC
Confidence 3455666655422348889999886544
No 63
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=20.34 E-value=48 Score=22.86 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=6.4
Q ss_pred cccCCCEEEEee
Q 033421 61 GFKRGDILFLHM 72 (119)
Q Consensus 61 ti~~GD~vlv~~ 72 (119)
.+++||+|+.+.
T Consensus 4 ~l~~GDlvf~~~ 15 (186)
T 2if6_A 4 QPQTGDIIFQIS 15 (186)
T ss_dssp CCCTTCEEEECC
T ss_pred cCCCCCEEEEEc
Confidence 355566655543
No 64
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=20.25 E-value=69 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=20.6
Q ss_pred ccccCCCEEEEeecCCCCCcCcEEEEEeCC
Q 033421 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (119)
Q Consensus 60 Pti~~GD~vlv~~~~~~~~~GDIVvf~~~~ 89 (119)
|+=..+|.+..+....+++.||.|+|...+
T Consensus 358 ~~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 387 (425)
T 1f3t_A 358 PTCDGLDQIVERYYLPEMQVGEWLLFEDMG 387 (425)
T ss_dssp SSSCTTCEEEEEEEEECCCTTCEEEECSCC
T ss_pred CCcCCCCEecccccCCCCCCCCEEEEcCCC
Confidence 344566887776633358999999997554
No 65
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=20.02 E-value=39 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=16.5
Q ss_pred eCCCCcccccCCCEEEEee
Q 033421 54 LSGSMEPGFKRGDILFLHM 72 (119)
Q Consensus 54 ~g~SM~Pti~~GD~vlv~~ 72 (119)
.-+|+.|.+++||+|+.+.
T Consensus 151 aaGgL~~~l~~GDlVi~~d 169 (324)
T 3phb_E 151 AAGGLNPKFEVGDIMLIRD 169 (324)
T ss_dssp EEEECSTTCCTTCEEEEEE
T ss_pred ceeecCCCCCCCCEEEEhh
Confidence 3469999999999999875
Done!