BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033422
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LOO|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a
          From Noe Data
 pdb|2LOP|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14a
          Length = 108

 Score = 33.1 bits (74), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 57 NSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGIS 96
          N    + +    A  L  +M  R+  + KIMPAG+VAG+S
Sbjct: 57 NDKRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLS 96


>pdb|2LOS|A Chain A, Backbone Structure Of Human Membrane Protein Tmem14c
          Length = 121

 Score = 32.7 bits (73), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 72  LTAVMAQRYMETSKIMPAGIVAGISALMT 100
           L  +M  R+  + K MPAG++AG S LM 
Sbjct: 81  LAGIMGMRFYHSGKFMPAGLIAGASLLMV 109


>pdb|4DBL|A Chain A, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|B Chain B, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|F Chain F, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4DBL|G Chain G, Crystal Structure Of E159q Mutant Of Btucdf
 pdb|4FI3|A Chain A, Structure Of Vitamin B12 Transporter Btucd-F In A
           Nucleotide-Bound State
 pdb|4FI3|B Chain B, Structure Of Vitamin B12 Transporter Btucd-F In A
           Nucleotide-Bound State
          Length = 349

 Score = 28.5 bits (62), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 6/47 (12%)

Query: 60  FAIVIETVCAALLTAVM----AQRYMETSKIMPAGIVAGI--SALMT 100
           +A+ +  +  AL+  ++    A+R++ TS+++ AG+  GI  SALMT
Sbjct: 138 WALGLSAIAGALIITLILLRFARRHLSTSRLLLAGVALGIISSALMT 184


>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
 pdb|4D93|B Chain B, Crystal Structure Of Tep1s
 pdb|4D93|C Chain C, Crystal Structure Of Tep1s
          Length = 1323

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 55   KKNSYFAIV--IETVCAALLTAVMAQRYMETSKIM 87
            KK  Y+     IET   ALL+ VMA++Y++   +M
Sbjct: 1038 KKERYWGTTNQIETTAYALLSFVMAEKYLDGIPVM 1072


>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
 pdb|3A6M|B Chain B, Crystal Structure Of Grpe From Thermus Thermophilus Hb8
          Length = 177

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 78  QRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIPTKAE 119
            R +E ++  P  I  G+ A+  GF+      G  ++P + E
Sbjct: 83  DRALEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVPGEGE 124


>pdb|2QI9|A Chain A, Abc-Transporter Btucd In Complex With Its Periplasmic
           Binding Protein Btuf
 pdb|2QI9|B Chain B, Abc-Transporter Btucd In Complex With Its Periplasmic
           Binding Protein Btuf
          Length = 326

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 60  FAIVIETVCAALLTAVM----AQRYMETSKIMPAGIVAGI--SALMT 100
           +A+ +  +  AL+  ++    A+R++ TS+++ AG+  GI  SAL T
Sbjct: 115 WALGLSAIAGALIITLILLRFARRHLSTSRLLLAGVALGIISSALXT 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,148,269
Number of Sequences: 62578
Number of extensions: 50663
Number of successful extensions: 198
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)