Query 033422
Match_columns 119
No_of_seqs 109 out of 330
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4267 Predicted membrane pro 100.0 8.4E-36 1.8E-40 209.8 10.1 108 1-115 1-110 (110)
2 PF03647 Tmemb_14: Transmembra 100.0 6.1E-31 1.3E-35 181.7 2.4 96 4-105 1-96 (96)
3 COG5548 Small integral membran 99.9 1E-22 2.2E-27 140.6 6.1 92 6-103 6-97 (105)
4 PF11286 DUF3087: Protein of u 79.6 9.1 0.0002 29.1 6.4 71 29-112 20-90 (165)
5 PRK01030 tetrahydromethanopter 78.8 22 0.00048 28.9 8.7 90 29-119 159-263 (264)
6 PF09586 YfhO: Bacterial membr 62.7 93 0.002 28.0 10.0 59 32-97 121-179 (843)
7 PF01032 FecCD: FecCD transpor 62.3 23 0.0005 28.7 5.6 80 25-108 40-121 (311)
8 PF10315 DUF2416: Protein of u 61.5 9.6 0.00021 27.1 2.8 68 33-106 36-106 (108)
9 PF12751 Vac7: Vacuolar segreg 58.6 7.1 0.00015 33.3 2.1 26 4-29 304-329 (387)
10 COG3859 Predicted membrane pro 57.7 75 0.0016 24.5 7.3 81 23-110 49-132 (185)
11 PRK03784 vtamin B12-transporte 55.0 1.2E+02 0.0026 25.1 11.0 50 25-74 56-107 (331)
12 PF07214 DUF1418: Protein of u 54.6 68 0.0015 22.3 6.0 19 36-54 16-34 (96)
13 PF02656 DUF202: Domain of unk 53.4 54 0.0012 20.5 6.3 19 68-86 55-73 (73)
14 PRK10577 iron-hydroxamate tran 51.4 1.9E+02 0.004 26.2 10.5 47 27-73 62-110 (668)
15 PF09990 DUF2231: Predicted me 47.6 83 0.0018 21.0 8.3 24 29-52 7-30 (104)
16 PF04156 IncA: IncA protein; 46.1 57 0.0012 24.0 5.0 21 7-27 11-31 (191)
17 PF06166 DUF979: Protein of un 45.9 77 0.0017 26.4 6.1 69 36-115 7-76 (308)
18 COG4872 Predicted membrane pro 45.0 1.3E+02 0.0028 25.7 7.4 63 27-92 47-110 (394)
19 PF02439 Adeno_E3_CR2: Adenovi 44.2 43 0.00094 19.5 3.2 24 25-48 2-25 (38)
20 PF01810 LysE: LysE type trans 44.1 1.2E+02 0.0026 21.9 7.8 32 80-112 51-82 (191)
21 PRK11228 fecC iron-dicitrate t 43.8 1.8E+02 0.0039 23.8 10.8 45 28-72 52-98 (323)
22 PF06570 DUF1129: Protein of u 43.7 1.4E+02 0.003 22.5 10.9 19 9-27 89-107 (206)
23 PF04391 DUF533: Protein of un 42.7 61 0.0013 24.8 4.8 40 16-55 12-55 (188)
24 TIGR01148 mtrC N5-methyltetrah 41.6 1.9E+02 0.0042 23.6 8.6 27 28-54 164-190 (265)
25 TIGR03869 F420-0_ABCperm propo 41.1 2E+02 0.0044 23.7 10.4 75 27-108 53-129 (325)
26 COG5336 Uncharacterized protei 38.7 1.4E+02 0.0031 21.4 5.8 9 31-39 52-60 (116)
27 PF05283 MGC-24: Multi-glycosy 37.6 39 0.00085 26.0 3.0 26 28-53 160-185 (186)
28 PF07290 DUF1449: Protein of u 37.6 1.9E+02 0.0042 22.3 7.5 39 69-107 75-115 (202)
29 PRK13591 ubiA prenyltransferas 34.9 2.6E+02 0.0057 23.1 11.1 30 87-117 250-279 (307)
30 PRK09430 djlA Dna-J like membr 34.2 41 0.00089 26.9 2.8 27 14-41 6-32 (267)
31 PRK10441 iron-enterobactin tra 34.1 2.7E+02 0.0059 23.0 9.8 47 26-72 59-107 (335)
32 PRK13499 rhamnose-proton sympo 33.8 2.8E+02 0.0062 23.2 11.2 67 13-81 55-122 (345)
33 PF05283 MGC-24: Multi-glycosy 31.4 48 0.001 25.5 2.6 22 88-109 164-185 (186)
34 PRK03557 zinc transporter ZitB 31.2 2.3E+02 0.005 22.7 6.7 16 91-106 188-203 (312)
35 PRK10209 acid-resistance membr 31.0 2.3E+02 0.0049 21.2 10.9 44 7-50 50-98 (190)
36 TIGR02865 spore_II_E stage II 30.5 2.2E+02 0.0048 26.2 7.1 23 80-103 233-255 (764)
37 PF04588 HIG_1_N: Hypoxia indu 30.4 70 0.0015 19.4 2.8 24 82-105 2-25 (54)
38 PF13572 DUF4134: Domain of un 29.9 1.9E+02 0.0041 19.9 6.5 36 20-58 37-72 (98)
39 PRK10440 iron-enterobactin tra 29.7 3.2E+02 0.007 22.6 10.3 76 28-108 60-137 (330)
40 PF03239 FTR1: Iron permease F 29.6 3E+02 0.0065 22.2 7.1 27 13-40 151-177 (306)
41 PTZ00233 variable surface prot 29.5 39 0.00085 29.9 2.1 32 86-117 439-470 (509)
42 COG4389 Site-specific recombin 29.0 4.4E+02 0.0095 23.9 9.7 95 7-119 559-669 (677)
43 PRK11285 araH L-arabinose tran 29.0 3.2E+02 0.0069 22.3 11.0 53 57-112 106-158 (333)
44 PRK09777 fecD iron-dicitrate t 28.7 3.3E+02 0.0072 22.4 9.9 77 28-108 52-130 (318)
45 PF12301 CD99L2: CD99 antigen 28.2 76 0.0017 24.0 3.2 30 29-58 114-144 (169)
46 PF03729 DUF308: Short repeat 28.1 1.4E+02 0.003 17.7 7.7 37 11-48 3-39 (72)
47 TIGR00985 3a0801s04tom mitocho 28.0 1.1E+02 0.0024 22.7 4.0 19 42-60 19-37 (148)
48 PRK10577 iron-hydroxamate tran 27.0 4.8E+02 0.01 23.6 9.6 31 25-55 395-425 (668)
49 TIGR00145 FTR1 family protein. 26.3 3.5E+02 0.0076 21.9 8.9 31 12-42 18-52 (283)
50 PF09323 DUF1980: Domain of un 26.1 2.7E+02 0.0059 20.5 6.7 27 59-85 32-58 (182)
51 PF11158 DUF2938: Protein of u 25.7 2.3E+02 0.005 20.9 5.4 45 64-109 69-113 (150)
52 PF05513 TraA: TraA; InterPro 25.7 99 0.0021 22.3 3.3 25 16-41 86-110 (119)
53 PRK10255 PTS system N-acetyl g 25.5 2.8E+02 0.006 25.3 6.8 15 12-26 54-68 (648)
54 PF10131 PTPS_related: 6-pyruv 24.5 5.2E+02 0.011 23.2 9.9 43 12-54 32-74 (616)
55 PF10011 DUF2254: Predicted me 24.2 4.1E+02 0.009 22.0 8.9 53 57-109 91-151 (371)
56 PRK05771 V-type ATP synthase s 23.3 4.3E+02 0.0092 23.5 7.5 17 8-24 365-381 (646)
57 PF02038 ATP1G1_PLM_MAT8: ATP1 23.2 1.2E+02 0.0027 18.6 2.9 17 32-48 16-32 (50)
58 PF09925 DUF2157: Predicted me 22.6 2.9E+02 0.0062 19.5 8.6 20 35-54 37-58 (145)
59 PRK09699 D-allose transporter 22.6 4.1E+02 0.009 21.4 9.9 45 65-112 98-142 (312)
60 PRK03776 phosphoglycerol trans 22.1 4.6E+02 0.01 24.5 7.6 12 25-36 22-33 (762)
61 PF07172 GRP: Glycine rich pro 21.6 1.5E+02 0.0031 20.3 3.4 26 27-52 3-28 (95)
62 KOG4056 Translocase of outer m 21.0 1.2E+02 0.0025 22.7 2.9 31 28-60 9-39 (143)
63 COG3180 AbrB Putative ammonia 20.9 5.2E+02 0.011 21.9 7.3 82 10-100 193-279 (352)
64 TIGR00980 3a0801so1tim17 mitoc 20.9 3.8E+02 0.0082 20.3 9.4 18 7-24 18-35 (170)
65 COG5305 Predicted membrane pro 20.9 5.5E+02 0.012 23.1 7.6 50 57-106 167-220 (552)
66 PRK11099 putative inner membra 20.8 5.3E+02 0.012 22.0 8.5 17 85-101 279-295 (399)
67 COG1010 CobJ Precorrin-3B meth 20.5 37 0.00081 27.4 0.3 6 1-6 127-132 (249)
68 PF11361 DUF3159: Protein of u 20.3 4E+02 0.0087 20.3 6.3 12 29-40 29-40 (187)
69 COG0659 SUL1 Sulfate permease 20.2 5.6E+02 0.012 22.7 7.5 70 27-101 21-90 (554)
No 1
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.4e-36 Score=209.80 Aligned_cols=108 Identities=52% Similarity=0.807 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHH-HHHHHHHHHHH
Q 033422 1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKK-NSYFAIVIETV-CAALLTAVMAQ 78 (119)
Q Consensus 1 ~~Dfc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~-~~~~~~~~~~~-~s~~L~~~m~~ 78 (119)
|||+|++++|+.|+++||+|||.|+||+|||++|+.+|++ +||.+++.|++++ ++. +++. +|++|+.+|+.
T Consensus 1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ 73 (110)
T ss_pred CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999975 5677777777765 443 5666 89999999999
Q ss_pred HHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 033422 79 RYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQIP 115 (119)
Q Consensus 79 R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~~~p 115 (119)
||.+|||+||+|+++.+|++|++||.|+..++.|++|
T Consensus 74 R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~ 110 (110)
T KOG4267|consen 74 RFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP 110 (110)
T ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999887
No 2
>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised.; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.
Probab=99.96 E-value=6.1e-31 Score=181.68 Aligned_cols=96 Identities=49% Similarity=0.829 Sum_probs=87.1
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033422 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMET 83 (119)
Q Consensus 4 fc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt 83 (119)
||++++|++++.+||++||+|+||+|||++|+++|++++.++++++ +|+++++.+++.+|.+|+.+|++|+.||
T Consensus 1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t 74 (96)
T PF03647_consen 1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT 74 (96)
T ss_dssp HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999998875 3667888899999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHH
Q 033422 84 SKIMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
+|+||+|+++++|++|+++|.|
T Consensus 75 ~k~~Pagl~~~~s~~~~~~y~Y 96 (96)
T PF03647_consen 75 RKFMPAGLMALLSGAMLAFYYY 96 (96)
T ss_dssp SSSCCCHHHHHHHHHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999976
No 3
>COG5548 Small integral membrane protein [Function unknown]
Probab=99.87 E-value=1e-22 Score=140.63 Aligned_cols=92 Identities=33% Similarity=0.509 Sum_probs=82.5
Q ss_pred chHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033422 6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSK 85 (119)
Q Consensus 6 ~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K 85 (119)
-.+.++.|..+||+|||.||+|++||++|+.+|+.+.+++|+.+| +++|++..++..|++|...++.|+.||||
T Consensus 6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK 79 (105)
T COG5548 6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK 79 (105)
T ss_pred HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence 468999999999999999999999999999999999999999865 56689999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHH
Q 033422 86 IMPAGIVAGISALMTGFY 103 (119)
Q Consensus 86 ~mPaGl~~~ls~~~~~~y 103 (119)
+||++++++.+....-+|
T Consensus 80 pvP~~Lt~lgg~~s~y~y 97 (105)
T COG5548 80 PVPAGLTTLGGMLSLYVY 97 (105)
T ss_pred CcchHHHHHhhhhhhhhe
Confidence 999988877665544444
No 4
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=79.63 E-value=9.1 Score=29.05 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=41.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHh
Q 033422 29 ASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 29 ~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~ 108 (119)
..++++++..++.+.....++-.-+ ++++..+..++..+++++.. ...|.+|++.+|-. ++|+|++-
T Consensus 20 ~~~v~~lai~sl~~s~llI~lFg~~-~~~nf~~NllGVil~~~~~~-~~l~~~k~~p~m~E-----------v~YvW~LK 86 (165)
T PF11286_consen 20 VACVASLAILSLAFSQLLIALFGGE-SGGNFHWNLLGVILGLLLTS-ALLRQLKTHPFMTE-----------VYYVWQLK 86 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCceeeeHHHHHHHHHHHH-HHHHHHccChHHHH-----------HHHHHHHH
Confidence 3444455444444333333332211 34555666677767766666 46668899988876 67888875
Q ss_pred hCCC
Q 033422 109 TGGN 112 (119)
Q Consensus 109 ~~~~ 112 (119)
.-.|
T Consensus 87 q~ln 90 (165)
T PF11286_consen 87 QLLN 90 (165)
T ss_pred HHHH
Confidence 4433
No 5
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=78.78 E-value=22 Score=28.91 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=47.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhh--cC--ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHH
Q 033422 29 ASLAGGVGTGLLLVSAGYLSLKAFEK--KK--NSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYL 104 (119)
Q Consensus 29 ~SLiaG~~~G~~ll~ag~~~~~~~~~--~~--~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~ 104 (119)
++.++....+.++...+...++-++. |. +++=-+.++..+.++-..+++.--......+++ .+.++=.+...+|.
T Consensus 159 ~~vi~~G~IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~gi~s~~~~~~~~~-~i~iivg~i~W~~~ 237 (264)
T PRK01030 159 TSVIATGFIALLFILGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIFGIASLAFLGLAAA-IISIIVGLIGWYYA 237 (264)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHH
Confidence 56777777888888888888877766 32 222222333333332222233222222345566 44444444555665
Q ss_pred HHHh-----------hCCCCCCCCCC
Q 033422 105 YKIA-----------TGGNQIPTKAE 119 (119)
Q Consensus 105 ~~l~-----------~~~~~~p~~~~ 119 (119)
|+-. .+..+-|||||
T Consensus 238 y~~y~~~sk~dA~~V~~tg~lPk~ee 263 (264)
T PRK01030 238 YVKFVKLSKRDAAAVLWTGLLPKKEE 263 (264)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 5522 23337788886
No 6
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=62.68 E-value=93 Score=28.01 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH
Q 033422 32 AGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISA 97 (119)
Q Consensus 32 iaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~ 97 (119)
.+-++.+.++..+|+...+.+ +..| +-..+=.-|...-.-|+++.||+.+=-++..+..
T Consensus 121 ~~~~i~s~~Yafsg~~~~~~~----~~~f---ld~~i~lPL~llgie~~~~~~k~~~~~~~~~l~~ 179 (843)
T PF09586_consen 121 WAALIGSLLYAFSGYVIYYSF----NIMF---LDAMILLPLLLLGIERLLKEKKWWLFIISLALAL 179 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----hHHH---HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 555555777778999876432 3333 3333444455555688999999877544444444
No 7
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=62.30 E-value=23 Score=28.73 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=43.9
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHhhhhc-CC-hhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHH
Q 033422 25 KGSTASLAGGVGTGLLLVSAGYLSLKAFEKK-KN-SYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGF 102 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~-~~-~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~ 102 (119)
.--.|-+++.+..|+.+..+|+..+...|++ .+ +..|..-.+....++..... ........-+.+.++......
T Consensus 40 ~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLA~P~iLGissgA~lg~~~~~~~~----~~~~~~~~~~~a~iGal~~~~ 115 (311)
T PF01032_consen 40 DLRLPRILAAILVGAALALSGALLQTLTRNPLADPSILGISSGASLGAVLAILLF----PSLSFYGLPLFAFIGALLALL 115 (311)
T ss_dssp CTCHHHHHHHHHHHHHHHHHHHHHHHHTT-TT--TTTTTHHHHHHHHHHHHHHCC----TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCccccccchHhHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHHH
Confidence 3445888899999999999999988877765 22 23444433333333333221 111111222455566666666
Q ss_pred HHHHHh
Q 033422 103 YLYKIA 108 (119)
Q Consensus 103 y~~~l~ 108 (119)
.++.+.
T Consensus 116 lv~~l~ 121 (311)
T PF01032_consen 116 LVYLLS 121 (311)
T ss_dssp HHHHCH
T ss_pred HHhhhh
Confidence 666655
No 8
>PF10315 DUF2416: Protein of unknown function (DUF2416); InterPro: IPR019419 This entry represents conserved proteins with unknown function and is restricted to fungi.
Probab=61.50 E-value=9.6 Score=27.06 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC---CCccHHHHHHHHHHHHHHHHHH
Q 033422 33 GGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETS---KIMPAGIVAGISALMTGFYLYK 106 (119)
Q Consensus 33 aG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~---K~mPaGl~~~ls~~~~~~y~~~ 106 (119)
.-+.||.+.+..+|..+. .|..-+-....+=|.+=..+-++|-+|+. |+.|- .++.+++.-...|..+
T Consensus 36 ~~llFg~a~~lg~ymi~d-----GD~~NGsGf~~AWS~lYLivngr~siksl~~gr~~PL-~Ls~~a~~na~lYG~~ 106 (108)
T PF10315_consen 36 SCLLFGAAFALGGYMIYD-----GDLENGSGFVTAWSTLYLIVNGRKSIKSLRRGRVWPL-ALSGLALGNAGLYGRR 106 (108)
T ss_pred HhHHHHHHHHhhhheeec-----CCccccchHHHHHHHHHHHHcChhhhHHhccCCchHH-HHHHHHHhchhheeee
Confidence 445567777777887753 23333445667777777777788888875 89998 5566666656555543
No 9
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=58.65 E-value=7.1 Score=33.32 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.6
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChh
Q 033422 4 FCFTIPYGLILIGGGIVGFAKKGSTA 29 (119)
Q Consensus 4 fc~~~~yg~ll~~GGi~Gy~k~gS~~ 29 (119)
+|+.+..-+||.+||++||+.+-++|
T Consensus 304 ~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 304 SCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 68888888899999999999877765
No 10
>COG3859 Predicted membrane protein [Function unknown]
Probab=57.66 E-value=75 Score=24.53 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=47.7
Q ss_pred hhcCChhHhHHHHHHHHHHHHHH--HHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHH
Q 033422 23 AKKGSTASLAGGVGTGLLLVSAG--YLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYME-TSKIMPAGIVAGISALM 99 (119)
Q Consensus 23 ~k~gS~~SLiaG~~~G~~ll~ag--~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~k-t~K~mPaGl~~~ls~~~ 99 (119)
.|.|=+..+.+|+..|.+-+..| |...- .+..-...-...+.-++..+...-.| ++|..+.-+ ...=.+.
T Consensus 49 fRrG~kaG~~tGLl~Gll~~i~G~~Y~lhp------sQ~~ldYilaf~~iG~aG~F~~~~~~~~~k~i~~~~-~~~~~av 121 (185)
T COG3859 49 FRRGLKAGLLTGLLWGLLHLILGKAYILHP------SQVLLDYILAFMAIGFAGLFASSVRKQKKKLINKAL-GGVFIAV 121 (185)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhccH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35777888999999998887777 44311 11111112223455566666666665 567777733 3333456
Q ss_pred HHHHHHHHhhC
Q 033422 100 TGFYLYKIATG 110 (119)
Q Consensus 100 ~~~y~~~l~~~ 110 (119)
+.+|.+-...|
T Consensus 122 ~lRyl~HfisG 132 (185)
T COG3859 122 FLRYLFHFISG 132 (185)
T ss_pred HHHHHHHHHHH
Confidence 67787776544
No 11
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=55.02 E-value=1.2e+02 Score=25.08 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=33.4
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHhhhhc-CC-hhHHHHHHHHHHHHHHH
Q 033422 25 KGSTASLAGGVGTGLLLVSAGYLSLKAFEKK-KN-SYFAIVIETVCAALLTA 74 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~-~~-~~~~~~~~~~~s~~L~~ 74 (119)
.--.|=+++.+..|+.+..+|+..++..|++ .+ ...|..-.+....++..
T Consensus 56 ~~RlPRil~a~l~G~~La~sG~llQ~l~rNpLA~P~iLGissGA~l~~~l~i 107 (331)
T PRK03784 56 QLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAV 107 (331)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHH
Confidence 3345778899999999999999988888775 22 34454444433343433
No 12
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=54.56 E-value=68 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 033422 36 GTGLLLVSAGYLSLKAFEK 54 (119)
Q Consensus 36 ~~G~~ll~ag~~~~~~~~~ 54 (119)
+.|.++++.+|++.++|-.
T Consensus 16 ~lG~~LLv~a~Lsin~~l~ 34 (96)
T PF07214_consen 16 VLGMILLVLAYLSINDYLS 34 (96)
T ss_pred HHHHHHHHHHHHHHccccc
Confidence 5788999999999988754
No 13
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=53.36 E-value=54 Score=20.49 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q 033422 68 CAALLTAVMAQRYMETSKI 86 (119)
Q Consensus 68 ~s~~L~~~m~~R~~kt~K~ 86 (119)
++.+....-..||.+++|+
T Consensus 55 ~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 55 LGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4444444445677777664
No 14
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=51.43 E-value=1.9e+02 Score=26.17 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=31.9
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhhhhc--CChhHHHHHHHHHHHHHH
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAFEKK--KNSYFAIVIETVCAALLT 73 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~~~~--~~~~~~~~~~~~~s~~L~ 73 (119)
-.|-+++++..|+.+..+|...+...||+ +....|....+....++.
T Consensus 62 RlPR~l~a~l~G~~La~sG~~lQ~l~rNpLA~P~ilGissGA~lg~~~~ 110 (668)
T PRK10577 62 RLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLA 110 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhHHHHHHHHHHHHH
Confidence 45888999999999999999988877775 223344444433333333
No 15
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=47.63 E-value=83 Score=21.01 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=15.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHhh
Q 033422 29 ASLAGGVGTGLLLVSAGYLSLKAF 52 (119)
Q Consensus 29 ~SLiaG~~~G~~ll~ag~~~~~~~ 52 (119)
--++.|.+.+..-..+|......-
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346777777777777777655444
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.13 E-value=57 Score=23.96 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhhhhHhhhcCC
Q 033422 7 TIPYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 7 ~~~yg~ll~~GGi~Gy~k~gS 27 (119)
.++-|+++.++|+.+-+..++
T Consensus 11 ~iilgilli~~gI~~Lv~~~~ 31 (191)
T PF04156_consen 11 LIILGILLIASGIAALVLFIS 31 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777666553
No 17
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=45.86 E-value=77 Score=26.39 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 033422 36 GTGLLLVSAGYLSLKAFEKKKNS-YFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGNQI 114 (119)
Q Consensus 36 ~~G~~ll~ag~~~~~~~~~~~~~-~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~~~ 114 (119)
..|..++..++.+++ |.+|+ +++.. +.....+.-|. -++.+|.-..-++=.+|...=..+-...++++
T Consensus 7 l~Gl~~~~~a~~~~~---Dk~np~R~gt~-------lFW~llg~~F~-~G~~lp~~~~G~lvl~m~~la~~~~v~~g~~~ 75 (308)
T PF06166_consen 7 LIGLVFIITAVRSLR---DKTNPKRIGTA-------LFWGLLGLIFI-FGDYLPPFVVGILVLVMALLAGFGQVGIGSYK 75 (308)
T ss_pred HHHHHHHHHHHHHHc---CCCCCcccchH-------HHHHHHHHHHH-cCccchhHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 456666666666654 44343 33322 33333444444 45688986665555566655555555555533
Q ss_pred C
Q 033422 115 P 115 (119)
Q Consensus 115 p 115 (119)
.
T Consensus 76 ~ 76 (308)
T PF06166_consen 76 E 76 (308)
T ss_pred C
Confidence 3
No 18
>COG4872 Predicted membrane protein [Function unknown]
Probab=45.03 E-value=1.3e+02 Score=25.72 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=30.3
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhhhh-cCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHH
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAFEK-KKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIV 92 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~~~-~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~ 92 (119)
++.+-++|+.+|+..+.- .--+|++ ++..+.....++....-+.+....|=-+++|+.|+.+.
T Consensus 47 ~i~atigglLlgagvi~f---VAANW~~iprlvkv~llf~li~gvy~gG~~awreqq~~~~lgeAL~ 110 (394)
T COG4872 47 MIAATIGGLLLGAGVITF---VAANWFSIPRLVKVILLFSLIFGVYIGGFYAWREQQSKRFLGEALL 110 (394)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHhhcccchhhHHH
Confidence 345566666666543221 2234655 44444444433333333333333444456678888544
No 19
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.24 E-value=43 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.6
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHH
Q 033422 25 KGSTASLAGGVGTGLLLVSAGYLS 48 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~~ll~ag~~~ 48 (119)
.+|+.|.++|++.|.+++..-...
T Consensus 2 p~s~IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 2 PSSTIAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 368899999999998877665544
No 20
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=44.06 E-value=1.2e+02 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCC
Q 033422 80 YMETSKIMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 80 ~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~ 112 (119)
..++.+.+-. .+-.++++.+.+..++..+...
T Consensus 51 l~~~~~~~~~-~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 51 LLKSSPWLFM-ILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHhChHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 3343333333 6778888888888888875444
No 21
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=43.78 E-value=1.8e+02 Score=23.80 Aligned_cols=45 Identities=22% Similarity=0.068 Sum_probs=30.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhc-CC-hhHHHHHHHHHHHHH
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKK-KN-SYFAIVIETVCAALL 72 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~-~~-~~~~~~~~~~~s~~L 72 (119)
.|=++.++..|+.+..+|...++..|++ .+ ...|..-.+....++
T Consensus 52 lPR~l~a~l~G~~La~sG~~lQ~l~rNpLa~P~ilGissGA~l~~~~ 98 (323)
T PRK11228 52 LPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMAL 98 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccHhhHHHHHHHHHHH
Confidence 4668889999999999999988888775 22 234444444333333
No 22
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.73 E-value=1.4e+02 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=13.6
Q ss_pred HHHHHHHhhhhhHhhhcCC
Q 033422 9 PYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 9 ~yg~ll~~GGi~Gy~k~gS 27 (119)
..+.+..+-|+++++..++
T Consensus 89 ~~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3566777788999877643
No 23
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=42.74 E-value=61 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=23.1
Q ss_pred hhhhhHhhhcCCh----hHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 033422 16 GGGIVGFAKKGST----ASLAGGVGTGLLLVSAGYLSLKAFEKK 55 (119)
Q Consensus 16 ~GGi~Gy~k~gS~----~SLiaG~~~G~~ll~ag~~~~~~~~~~ 55 (119)
.||++|-+..+.+ ..=..+....+++...+|-.+|.|+++
T Consensus 12 ~ggl~g~LlG~k~~r~~~g~a~~~Gg~AalG~lA~~ayq~~q~~ 55 (188)
T PF04391_consen 12 AGGLLGMLLGGKKGRKMGGGALKYGGLAALGGLAYKAYQNWQQN 55 (188)
T ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3888888764332 222333344455666677777777654
No 24
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=41.64 E-value=1.9e+02 Score=23.56 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=20.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEK 54 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~ 54 (119)
..+.++....+.++...+...++-++.
T Consensus 164 ~~~vi~~G~IAl~Fi~~~mAilHPFNA 190 (265)
T TIGR01148 164 ISYVIANGYIALLFIIGGMAILHPFNA 190 (265)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCcchh
Confidence 356677777788888888888877765
No 25
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=41.07 E-value=2e+02 Score=23.66 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=43.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhhhhc--CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHH
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAFEKK--KNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYL 104 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~~~~--~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~ 104 (119)
-.|=+++++..|+.+..+|...+...|++ +.+..|..-.+....++...... + -..| +.+.++...+...+
T Consensus 53 RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa~P~iLGissGA~l~~~l~~~~~~----~-~~~~--~~a~~Gal~~~~lv 125 (325)
T TIGR03869 53 RLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGV----A-VLLP--VAAFAGALLALAAT 125 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH----H-HHHH--HHHHHHHHHHHHHH
Confidence 35778899999999999999988877775 23344544443333344333221 1 0122 34445555555555
Q ss_pred HHHh
Q 033422 105 YKIA 108 (119)
Q Consensus 105 ~~l~ 108 (119)
+.+.
T Consensus 126 ~~l~ 129 (325)
T TIGR03869 126 LGLA 129 (325)
T ss_pred HHHH
Confidence 5554
No 26
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.74 E-value=1.4e+02 Score=21.43 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=4.2
Q ss_pred hHHHHHHHH
Q 033422 31 LAGGVGTGL 39 (119)
Q Consensus 31 LiaG~~~G~ 39 (119)
+|+|+.+|+
T Consensus 52 fIsGilVGa 60 (116)
T COG5336 52 FISGILVGA 60 (116)
T ss_pred HHHHHHHHH
Confidence 444444444
No 27
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=37.59 E-value=39 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=17.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhh
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFE 53 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~ 53 (119)
..|.|+|+++-..++...|..++.+|
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 47888887777666666666555443
No 28
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=37.56 E-value=1.9e+02 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhh--CCCccHHHHHHHHHHHHHHHHHHH
Q 033422 69 AALLTAVMAQRYMET--SKIMPAGIVAGISALMTGFYLYKI 107 (119)
Q Consensus 69 s~~L~~~m~~R~~kt--~K~mPaGl~~~ls~~~~~~y~~~l 107 (119)
+.-+++...+-...+ ..++|+.+.+.++...+.+.....
T Consensus 75 ~F~l~G~~lq~~~~~~~~~~lp~~l~~~~al~~sl~~~~~~ 115 (202)
T PF07290_consen 75 SFGLIGYLLQYVAISLFGGPLPAWLAAPVALFLSLFFTRYL 115 (202)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 478888887777777666655443
No 29
>PRK13591 ubiA prenyltransferase; Provisional
Probab=34.95 E-value=2.6e+02 Score=23.09 Aligned_cols=30 Identities=10% Similarity=-0.029 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 033422 87 MPAGIVAGISALMTGFYLYKIATGGNQIPTK 117 (119)
Q Consensus 87 mPaGl~~~ls~~~~~~y~~~l~~~~~~~p~~ 117 (119)
+++ .+.+-|.....+|.++..+..+++|+.
T Consensus 250 ~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~~ 279 (307)
T PRK13591 250 FEP-IILLYSFVCGLICIQVYSSPFENEPSF 279 (307)
T ss_pred cCc-hhhHHHHHHHHHHHHHHcCCcccCcHH
Confidence 334 556668999999999999888866653
No 30
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.23 E-value=41 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHhhhhhHhhhcCChhHhHHHHHHHHHH
Q 033422 14 LIGGGIVGFAKKGSTASLAGGVGTGLLL 41 (119)
Q Consensus 14 l~~GGi~Gy~k~gS~~SLiaG~~~G~~l 41 (119)
=.+||++||+. |..+..+.|+.+|-++
T Consensus 6 ki~g~~~G~~~-~g~~Ga~~G~~~Gh~~ 32 (267)
T PRK09430 6 KILGFAFGFLF-GGFFGALLGLLIGHMF 32 (267)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHhHH
Confidence 36899999998 4577777777777644
No 31
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=34.09 E-value=2.7e+02 Score=23.04 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=31.7
Q ss_pred CChhHhHHHHHHHHHHHHHHHHHHHhhhhc--CChhHHHHHHHHHHHHH
Q 033422 26 GSTASLAGGVGTGLLLVSAGYLSLKAFEKK--KNSYFAIVIETVCAALL 72 (119)
Q Consensus 26 gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~--~~~~~~~~~~~~~s~~L 72 (119)
--.|-+++++..|+.+..+|...++..|++ +.+..|..-.+....++
T Consensus 59 ~RLPR~l~ailvG~~LavaG~llQ~l~rNpLA~P~ilGissGA~l~~v~ 107 (335)
T PRK10441 59 ARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVL 107 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHhHHHHHHHH
Confidence 335778899999999999999988887775 22334444433333333
No 32
>PRK13499 rhamnose-proton symporter; Provisional
Probab=33.83 E-value=2.8e+02 Score=23.19 Aligned_cols=67 Identities=13% Similarity=-0.008 Sum_probs=43.1
Q ss_pred HHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhh-cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 033422 13 ILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEK-KKNSYFAIVIETVCAALLTAVMAQRYM 81 (119)
Q Consensus 13 ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~-~~~~~~~~~~~~~~s~~L~~~m~~R~~ 81 (119)
.+.++.+..+.+.-|..++..+...|.+-........+..+. |-+ .+..++++...++...++.-+.
T Consensus 55 ~~~~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS--~~~pIs~Gl~lv~gtL~~~i~~ 122 (345)
T PRK13499 55 ALLLPDFWAYYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMS--LGIGIAIGITLIVGTLMPPIIN 122 (345)
T ss_pred HHHhhhHHHHHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHc
Confidence 344488889999889999999999998877766666555544 322 2333445555555555544343
No 33
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=31.39 E-value=48 Score=25.54 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh
Q 033422 88 PAGIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 88 PaGl~~~ls~~~~~~y~~~l~~ 109 (119)
=.|+|..|++..++|++||..+
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhcc
Confidence 3689999999999999998653
No 34
>PRK03557 zinc transporter ZitB; Provisional
Probab=31.24 E-value=2.3e+02 Score=22.74 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033422 91 IVAGISALMTGFYLYK 106 (119)
Q Consensus 91 l~~~ls~~~~~~y~~~ 106 (119)
+++++-.+...+-.++
T Consensus 188 i~~ilis~~i~~~~~~ 203 (312)
T PRK03557 188 ILSILVSVLVLRSAWR 203 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333334
No 35
>PRK10209 acid-resistance membrane protein; Provisional
Probab=31.03 E-value=2.3e+02 Score=21.20 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=27.1
Q ss_pred hHHHHHHHHhhhhhH---hhhcC--ChhHhHHHHHHHHHHHHHHHHHHH
Q 033422 7 TIPYGLILIGGGIVG---FAKKG--STASLAGGVGTGLLLVSAGYLSLK 50 (119)
Q Consensus 7 ~~~yg~ll~~GGi~G---y~k~g--S~~SLiaG~~~G~~ll~ag~~~~~ 50 (119)
++..|..+.+.|++. +.+.+ +......++..|.++...|.....
T Consensus 50 ~~~~g~~ll~~Gi~~l~~~~~~~~~~~~~~~~~ll~Gil~ii~Gil~l~ 98 (190)
T PRK10209 50 STVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYFFIR 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777753 33322 234455567778888888887764
No 36
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=30.48 E-value=2.2e+02 Score=26.16 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHhhCCCccHHHHHHHHHHHHHHH
Q 033422 80 YMETSKIMPAGIVAGISALMTGFY 103 (119)
Q Consensus 80 ~~kt~K~mPaGl~~~ls~~~~~~y 103 (119)
|.+.+|+.-+ +-.+++-+.+.+|
T Consensus 233 fk~~gK~g~~-~g~~l~~~il~~y 255 (764)
T TIGR02865 233 FKELGKIGTG-IGYLVGFLILAFY 255 (764)
T ss_pred hccCCcceee-HHHHHHHHHHHHH
Confidence 3445555444 3333333333444
No 37
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=30.35 E-value=70 Score=19.39 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=11.9
Q ss_pred hhCCCccHHHHHHHHHHHHHHHHH
Q 033422 82 ETSKIMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 82 kt~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
|..+++|.|..+..+.+....|..
T Consensus 2 ke~plv~ig~~~~~~~l~~g~~~~ 25 (54)
T PF04588_consen 2 KENPLVPIGMLATVGALAYGLYNF 25 (54)
T ss_dssp -S--CHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHh
Confidence 345666776666665555544433
No 38
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=29.87 E-value=1.9e+02 Score=19.93 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=21.2
Q ss_pred hHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCCh
Q 033422 20 VGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNS 58 (119)
Q Consensus 20 ~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~ 58 (119)
..|+....+-...-|.++|. +.+...++.|++|++.
T Consensus 37 ~sy~~~~~~l~yaI~aVvgl---IGai~VY~k~~~Gd~d 72 (98)
T PF13572_consen 37 TSYFDPVTKLMYAIGAVVGL---IGAIRVYIKWNNGDQD 72 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCCc
Confidence 34555555555555555554 4566778888777643
No 39
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=29.68 E-value=3.2e+02 Score=22.56 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=42.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhc-CC-hhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHH
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKK-KN-SYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~-~~-~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
.|=+++.+..|+.+..+|...+...|++ .+ ...|..-.+....++...+.. .. .+. .-+.+.+++..+...++
T Consensus 60 lPRil~a~l~G~~LalsG~llQ~l~rNpLa~P~iLGissGA~lg~~~~~~~~~---~~-~~~-~~~~a~~gal~~~~lv~ 134 (330)
T PRK10440 60 LPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFG---QD-LTA-IALAAMAGGIVTSLLVW 134 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHhhHHHHHHHHHHHHHHHHh---hH-HHH-HHHHHHHHHHHHHHHHH
Confidence 4668899999999999999988877775 22 234444333333333332211 01 111 11445555555666666
Q ss_pred HHh
Q 033422 106 KIA 108 (119)
Q Consensus 106 ~l~ 108 (119)
.+.
T Consensus 135 ~l~ 137 (330)
T PRK10440 135 LLA 137 (330)
T ss_pred HHH
Confidence 665
No 40
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=29.64 E-value=3e+02 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHhhhhhHhhhcCChhHhHHHHHHHHH
Q 033422 13 ILIGGGIVGFAKKGSTASLAGGVGTGLL 40 (119)
Q Consensus 13 ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ 40 (119)
++.++|+..+.++ +.++...|...|.+
T Consensus 151 vLfl~a~~~~~~~-~~~~~~~g~~~G~~ 177 (306)
T PF03239_consen 151 VLFLAALAASLRK-DAASILLGAILGIA 177 (306)
T ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHH
Confidence 4666777777766 55666666555553
No 41
>PTZ00233 variable surface protein Vir18; Provisional
Probab=29.49 E-value=39 Score=29.87 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 033422 86 IMPAGIVAGISALMTGFYLYKIATGGNQIPTK 117 (119)
Q Consensus 86 ~mPaGl~~~ls~~~~~~y~~~l~~~~~~~p~~ 117 (119)
-+|.|++.+|+++-=-==+|++++..|+|+-+
T Consensus 439 SaPmGIvLLLGLLFKyTPLWRvLTKknRKk~a 470 (509)
T PTZ00233 439 SMPIGIALLLGLLFKYTPLWRVLTKKNRKKGA 470 (509)
T ss_pred ccchhHHHHHHHhhccchhHHhhhhccccccc
Confidence 48999999998775444489999999977654
No 42
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=29.05 E-value=4.4e+02 Score=23.89 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhhhhHhhhc---------CChhHhHHHHHHHHH---HHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHH
Q 033422 7 TIPYGLILIGGGIVGFAKK---------GSTASLAGGVGTGLL---LVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTA 74 (119)
Q Consensus 7 ~~~yg~ll~~GGi~Gy~k~---------gS~~SLiaG~~~G~~---ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~ 74 (119)
++.+|.++.+||.+||... =|...+---++.|.. .+..|.. ..-+--.+-+.+|..|+.
T Consensus 559 N~~fG~lLGLtg~~g~llglpldiRHVafSsanlgyaa~sG~~~~~~F~lg~~---------~vlLiGvvNl~VSF~lAl 629 (677)
T COG4389 559 NFIFGMLLGLTGYFGHLLGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIF---------SVLLIGLVNLCVSFSLAL 629 (677)
T ss_pred HHHHHHHHcccHHHHHHcCCCcceeeeeeccchhHHHHhcchhhHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4678889999999998742 233333222222221 1111110 001111244668888899
Q ss_pred HHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCC----CCCCCCC
Q 033422 75 VMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGN----QIPTKAE 119 (119)
Q Consensus 75 ~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~----~~p~~~~ 119 (119)
.|..|-..|+ +.|-.=..-.+|+...... .||.|||
T Consensus 630 ~vAlRSr~t~---------i~s~r~I~~~VW~~Ik~~PL~Lf~P~a~~~ 669 (677)
T COG4389 630 FVALRSRGTK---------IGSIRNIIKSVWNQIKSNPLILFLPPAKEQ 669 (677)
T ss_pred HHHHHhcccc---------chhHHHHHHHHHHHHhcCCcEEEcCCCcCC
Confidence 8999888775 2344445556787654333 4555543
No 43
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=29.00 E-value=3.2e+02 Score=22.27 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCC
Q 033422 57 NSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 57 ~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~ 112 (119)
+......++++++.++..+.+.-..|.+ .|. +++.++.............+++
T Consensus 106 ~~~~all~al~~g~l~G~~~g~lv~~l~--i~~-~I~TLg~~~i~~gl~~~~~~g~ 158 (333)
T PRK11285 106 SLWLGVAAGLLLGAAVGLVNGFVIARLK--INA-LITTLATMQIVRGLAYIISDGK 158 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcH-HHHHHHHHHHHHHHHHHHcCCc
Confidence 3334444555555555544333222332 466 6666666666555544444433
No 44
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=28.73 E-value=3.3e+02 Score=22.36 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhc--CChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHH
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKK--KNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLY 105 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~--~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~ 105 (119)
.|=+++.+..|+.+..+|...|...|++ +.+..|..-.+....++...+..- . +.-..| +.+.+++......++
T Consensus 52 lPR~l~a~l~G~~LavsG~~lQ~l~rNpLA~P~iLGissGA~l~~~l~~~~~~~-~-~~~~~~--~~a~iG~l~~~~lv~ 127 (318)
T PRK09777 52 LPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLFPS-L-PVMWLP--LLAFIGGMAGLILLK 127 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhHHHHHHHHHHHHHHHHHh-h-HHHHHH--HHHHHHHHHHHHHHH
Confidence 4778899999999999999988887775 223455544444444443332110 0 100122 344455555555555
Q ss_pred HHh
Q 033422 106 KIA 108 (119)
Q Consensus 106 ~l~ 108 (119)
.+.
T Consensus 128 ~l~ 130 (318)
T PRK09777 128 MLA 130 (318)
T ss_pred HHH
Confidence 554
No 45
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=28.23 E-value=76 Score=24.03 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=14.1
Q ss_pred hHhHHHHHHHHHHHHHHH-HHHHhhhhcCCh
Q 033422 29 ASLAGGVGTGLLLVSAGY-LSLKAFEKKKNS 58 (119)
Q Consensus 29 ~SLiaG~~~G~~ll~ag~-~~~~~~~~~~~~ 58 (119)
+-+|+|+++.++..+.|- .++-.|++.+++
T Consensus 114 ~g~IaGIvsav~valvGAvsSyiaYqkKKlC 144 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYIAYQKKKLC 144 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445666665554443332 233344444443
No 46
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=28.13 E-value=1.4e+02 Score=17.74 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHH
Q 033422 11 GLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLS 48 (119)
Q Consensus 11 g~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~ 48 (119)
|.+..+-|++-..........+. ..+|..+...|...
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~-~i~g~~~i~~Gi~~ 39 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALA-IILGIWLIISGIFQ 39 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44455555555555444444333 45555555555543
No 47
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.97 E-value=1.1e+02 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhcCChhH
Q 033422 42 VSAGYLSLKAFEKKKNSYF 60 (119)
Q Consensus 42 l~ag~~~~~~~~~~~~~~~ 60 (119)
+..||..+-++++..|+.+
T Consensus 19 ~flgYciYFD~KRR~dPdF 37 (148)
T TIGR00985 19 AFLGYAIYFDYKRRNDPDF 37 (148)
T ss_pred HHHHHHHhhhhhhccCHHH
Confidence 3578999999988776544
No 48
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=26.96 E-value=4.8e+02 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=25.4
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 033422 25 KGSTASLAGGVGTGLLLVSAGYLSLKAFEKK 55 (119)
Q Consensus 25 ~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~ 55 (119)
.--.|=+.+.+..|+.+..+|...++..||+
T Consensus 395 ~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNp 425 (668)
T PRK10577 395 PLRLPRLLAALLAGAMLAVAGTLLQRLTRNP 425 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345778889999999999999988888775
No 49
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=26.32 E-value=3.5e+02 Score=21.90 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=22.4
Q ss_pred HHHHhhhhhHhhhcCC----hhHhHHHHHHHHHHH
Q 033422 12 LILIGGGIVGFAKKGS----TASLAGGVGTGLLLV 42 (119)
Q Consensus 12 ~ll~~GGi~Gy~k~gS----~~SLiaG~~~G~~ll 42 (119)
+++.+|-+..|.|+.. ++.+-.|++.|.+..
T Consensus 18 A~LIV~illa~L~k~~~~~~~~~V~~G~~~gl~~s 52 (283)
T TIGR00145 18 AALVVSVLLSYLKRAQRTRLRGWVWVGVLAGFAAC 52 (283)
T ss_pred HHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHH
Confidence 4678888999998443 467777777777655
No 50
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=26.05 E-value=2.7e+02 Score=20.53 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033422 59 YFAIVIETVCAALLTAVMAQRYMETSK 85 (119)
Q Consensus 59 ~~~~~~~~~~s~~L~~~m~~R~~kt~K 85 (119)
.+....+.++..+|+.+...|..+.++
T Consensus 32 ~~~~~~a~i~l~ilai~q~~~~~~~~~ 58 (182)
T PF09323_consen 32 IPLLYFAAILLLILAIVQLWRWFRPKR 58 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456667777777888888888877543
No 51
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=25.73 E-value=2.3e+02 Score=20.87 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHhh
Q 033422 64 IETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 64 ~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~ 109 (119)
+..+-+.++....+.+....-.+.|+ ++..+......+++.+-..
T Consensus 69 iGi~fa~~~~~l~g~~wl~~Pt~~~a-li~G~~tvl~p~~imqP~l 113 (150)
T PF11158_consen 69 IGIAFAVLYALLWGPGWLSRPTLLPA-LIFGLVTVLAPFFIMQPAL 113 (150)
T ss_pred HHHHHHHHHHHHHhhccccCCchHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34445555566666776666667777 5555555666666666443
No 52
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=25.71 E-value=99 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=15.7
Q ss_pred hhhhhHhhhcCChhHhHHHHHHHHHH
Q 033422 16 GGGIVGFAKKGSTASLAGGVGTGLLL 41 (119)
Q Consensus 16 ~GGi~Gy~k~gS~~SLiaG~~~G~~l 41 (119)
++|++.|+|+++ |-.+.|+..+..+
T Consensus 86 i~~~v~y~~TkN-~~~~~Gf~i~iIf 110 (119)
T PF05513_consen 86 IVGVVMYFKTKN-PMVFGGFAIVIIF 110 (119)
T ss_pred HHHHHHHHhccC-hHHhhhhHHhHhH
Confidence 566677777777 4456666665544
No 53
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=25.48 E-value=2.8e+02 Score=25.31 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=8.0
Q ss_pred HHHHhhhhhHhhhcC
Q 033422 12 LILIGGGIVGFAKKG 26 (119)
Q Consensus 12 ~ll~~GGi~Gy~k~g 26 (119)
.+.++|=.+|+.|+.
T Consensus 54 llFaigia~glak~~ 68 (648)
T PRK10255 54 LIFAIGVASSWSKDS 68 (648)
T ss_pred HHHHHHHHHHHhcCC
Confidence 344555556666553
No 54
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=24.50 E-value=5.2e+02 Score=23.19 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=29.4
Q ss_pred HHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 033422 12 LILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEK 54 (119)
Q Consensus 12 ~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~ 54 (119)
..+.+||+.-|.-.++.-+=.+.++.+.+++.+.|...+.+.+
T Consensus 32 L~~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~r 74 (616)
T PF10131_consen 32 LAFFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWR 74 (616)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhc
Confidence 3455677777777666666556677788888888877655543
No 55
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=24.24 E-value=4.1e+02 Score=21.99 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCC--ccH------HHHHHHHHHHHHHHHHHHhh
Q 033422 57 NSYFAIVIETVCAALLTAVMAQRYMETSKI--MPA------GIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 57 ~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~--mPa------Gl~~~ls~~~~~~y~~~l~~ 109 (119)
|+.....++..++.++......+.+++.-. .|. -++++++.+++.+|++.+.+
T Consensus 91 d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~ 151 (371)
T PF10011_consen 91 DRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIAR 151 (371)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778888888888899999887654 453 23444566667777776654
No 56
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=23.28 E-value=4.3e+02 Score=23.50 Aligned_cols=17 Identities=35% Similarity=0.424 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhhHhhh
Q 033422 8 IPYGLILIGGGIVGFAK 24 (119)
Q Consensus 8 ~~yg~ll~~GGi~Gy~k 24 (119)
++||+++.+.|+.-..|
T Consensus 365 ~GyGLil~l~~~~l~~~ 381 (646)
T PRK05771 365 AGYGLLLLLIGLLLSFK 381 (646)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888888877654443
No 57
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.23 E-value=1.2e+02 Score=18.63 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033422 32 AGGVGTGLLLVSAGYLS 48 (119)
Q Consensus 32 iaG~~~G~~ll~ag~~~ 48 (119)
+.|+++++++.+.|...
T Consensus 16 igGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH
Confidence 46788888887777755
No 58
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.64 E-value=2.9e+02 Score=19.54 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH--HHhhhh
Q 033422 35 VGTGLLLVSAGYLS--LKAFEK 54 (119)
Q Consensus 35 ~~~G~~ll~ag~~~--~~~~~~ 54 (119)
..+|++++.+|... -.+|++
T Consensus 37 ~~lGall~~~gii~fvA~nW~~ 58 (145)
T PF09925_consen 37 LYLGALLLGLGIILFVAANWDD 58 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666544 445665
No 59
>PRK09699 D-allose transporter subunit; Provisional
Probab=22.60 E-value=4.1e+02 Score=21.39 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHhhCCC
Q 033422 65 ETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTGFYLYKIATGGN 112 (119)
Q Consensus 65 ~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~~y~~~l~~~~~ 112 (119)
++++..++... ..+..++.-+|+ +++.++......-......+++
T Consensus 98 al~~g~l~G~~--ng~li~~~~i~~-~I~TLg~~~i~~gl~~~~~~~~ 142 (312)
T PRK09699 98 GVLVGGALGAI--NGCLVNWTGLHP-FIITLGTNAIFRGITLVISDAN 142 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHcCCc
Confidence 34344433333 334444445677 6677766666555555555554
No 60
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=22.14 E-value=4.6e+02 Score=24.52 Aligned_cols=12 Identities=17% Similarity=-0.028 Sum_probs=5.9
Q ss_pred cCChhHhHHHHH
Q 033422 25 KGSTASLAGGVG 36 (119)
Q Consensus 25 ~gS~~SLiaG~~ 36 (119)
.+++-..++.+.
T Consensus 22 ~~~~~~~~~~~~ 33 (762)
T PRK03776 22 GRNTWWFAATLT 33 (762)
T ss_pred ccccchHHHHHH
Confidence 455555555443
No 61
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.62 E-value=1.5e+02 Score=20.28 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=18.3
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhh
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAF 52 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~ 52 (119)
||+-|+-++++.++|++++-.+.++.
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 77777788888887777765554433
No 62
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.98 E-value=1.2e+02 Score=22.66 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=20.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhH
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYF 60 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~ 60 (119)
..|-|+|.+.|++ ..||..+-++++..++.+
T Consensus 9 ~~~vI~agiag~a--f~gYciYFd~KRrsdP~f 39 (143)
T KOG4056|consen 9 RTSVIAAGIAGLA--FIGYCIYFDKKRRSDPDF 39 (143)
T ss_pred hhHHHHHHHHHHH--HHHHHhhcccccccChhH
Confidence 3456666666665 578999888777665543
No 63
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=20.90 E-value=5.2e+02 Score=21.90 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh-----C
Q 033422 10 YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMET-----S 84 (119)
Q Consensus 10 yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt-----~ 84 (119)
-.....++|+.|..-+=--|.+.+.+..++..=..+ . .+.+-+.|.. ...-.++....|.|+.++ +
T Consensus 193 l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~-----~~~~lP~wl~---~va~~~iG~~IG~~f~~~~l~~~~ 263 (352)
T COG3180 193 LILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-G-----ITIQLPAWLL---AVAQALIGALIGSRFDRSILREAK 263 (352)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-c-----eeeeCCHHHH---HHHHHHHHHHHcccccHHHHHHhH
Confidence 345566788888887777777777776666432211 0 1122334433 223344555566666654 6
Q ss_pred CCccHHHHHHHHHHHH
Q 033422 85 KIMPAGIVAGISALMT 100 (119)
Q Consensus 85 K~mPaGl~~~ls~~~~ 100 (119)
++.|++++..+.....
T Consensus 264 r~~~~~~v~ii~l~~~ 279 (352)
T COG3180 264 RLLPAILVSIIALMAI 279 (352)
T ss_pred hhcchHHHHHHHHHHH
Confidence 7899999988877643
No 64
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=20.89 E-value=3.8e+02 Score=20.28 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=11.7
Q ss_pred hHHHHHHHHhhhhhHhhh
Q 033422 7 TIPYGLILIGGGIVGFAK 24 (119)
Q Consensus 7 ~~~yg~ll~~GGi~Gy~k 24 (119)
+-.|..=+..|++.++++
T Consensus 18 G~af~~G~~~G~~~g~~~ 35 (170)
T TIGR00980 18 GGAFAMGTIGGSIFQAFK 35 (170)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666666777777774
No 65
>COG5305 Predicted membrane protein [Function unknown]
Probab=20.89 E-value=5.5e+02 Score=23.06 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----HHHHHHHHHHHHHHHHHH
Q 033422 57 NSYFAIVIETVCAALLTAVMAQRYMETSKIMP----AGIVAGISALMTGFYLYK 106 (119)
Q Consensus 57 ~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mP----aGl~~~ls~~~~~~y~~~ 106 (119)
-+.+.+.....+.+..+.++..|.-.+||..| -++...+|....-++.+.
T Consensus 167 ~R~y~L~~~~~lis~~~Ll~ai~~~~~r~~l~~wliy~~~~~lsllt~~f~~~~ 220 (552)
T COG5305 167 ARSYALAVATTLISATLLLRAIRLPTSRKLLPGWLIYALLLILSLLTHYFFALT 220 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677778888888899555 223344444444444443
No 66
>PRK11099 putative inner membrane protein; Provisional
Probab=20.80 E-value=5.3e+02 Score=21.99 Aligned_cols=17 Identities=47% Similarity=0.456 Sum_probs=10.8
Q ss_pred CCccHHHHHHHHHHHHH
Q 033422 85 KIMPAGIVAGISALMTG 101 (119)
Q Consensus 85 K~mPaGl~~~ls~~~~~ 101 (119)
+.+|.+..++++..+..
T Consensus 279 ~i~~~~~~~~lGg~lFG 295 (399)
T PRK11099 279 KIFWAGPNAVIGGLLFG 295 (399)
T ss_pred ccccccHHHHHHHHHHH
Confidence 45787766666666543
No 67
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=20.45 E-value=37 Score=27.40 Aligned_cols=6 Identities=67% Similarity=1.431 Sum_probs=3.6
Q ss_pred Cccccc
Q 033422 1 MHDFCF 6 (119)
Q Consensus 1 ~~Dfc~ 6 (119)
+||||.
T Consensus 127 ~hDF~~ 132 (249)
T COG1010 127 GHDFCV 132 (249)
T ss_pred ccceEE
Confidence 466664
No 68
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=20.30 E-value=4e+02 Score=20.33 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=6.1
Q ss_pred hHhHHHHHHHHH
Q 033422 29 ASLAGGVGTGLL 40 (119)
Q Consensus 29 ~SLiaG~~~G~~ 40 (119)
+++++.+.....
T Consensus 29 ~aliaA~~~a~~ 40 (187)
T PF11361_consen 29 PALIAALAVAVV 40 (187)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 69
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=20.16 E-value=5.6e+02 Score=22.69 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=45.5
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHH
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETSKIMPAGIVAGISALMTG 101 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~K~mPaGl~~~ls~~~~~ 101 (119)
-+.=++||+..|..++=-+..--+ -.|-++..++..+.....+-+.+-+.|..-++ |.+.++++-.....
T Consensus 21 l~~Dl~AGltva~valP~ama~a~--~aGv~p~~GLyas~i~~~v~alfGgs~~~i~G---Pt~a~~~v~a~~i~ 90 (554)
T COG0659 21 LRGDLLAGLTVAAVALPLAMAFAI--AAGVPPEAGLYASIVAGIIYALFGGSRGLISG---PTGAFAVVLAAVIA 90 (554)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHcCCccceec---cchhhHHHHHHHHH
Confidence 334578888888876533322111 23677888888877777776666667777666 77777766666555
Done!