Query 033422
Match_columns 119
No_of_seqs 109 out of 330
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:59:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 99.9 7.4E-31 2.5E-35 184.1 0.0 97 5-108 12-108 (108)
2 2los_A Transmembrane protein 1 99.9 2.7E-30 9.1E-35 184.5 0.0 101 4-111 20-120 (121)
3 2lx0_A Membrane fusion protein 38.4 45 0.0015 17.6 3.5 21 89-109 10-30 (32)
4 4g1u_A Hemin transport system 37.2 1.2E+02 0.0041 24.2 7.3 28 28-55 79-106 (357)
5 2ks1_B Epidermal growth factor 21.8 82 0.0028 17.9 2.8 15 26-40 8-22 (44)
6 2jp3_A FXYD domain-containing 19.6 95 0.0033 19.3 2.9 17 32-48 19-35 (67)
7 2jo1_A Phospholemman; FXYD1, N 19.0 99 0.0034 19.5 2.9 17 32-48 18-34 (72)
8 2zxe_G FXYD10, phospholemman-l 18.4 1E+02 0.0035 19.5 2.9 18 32-49 21-38 (74)
9 2l2t_A Receptor tyrosine-prote 17.8 1.5E+02 0.0052 16.8 4.1 13 28-40 9-21 (44)
10 2qi9_A Vitamin B12 import syst 15.9 3.9E+02 0.013 20.6 9.9 29 27-55 56-84 (326)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=99.92 E-value=7.4e-31 Score=184.14 Aligned_cols=97 Identities=27% Similarity=0.445 Sum_probs=87.5
Q ss_pred cchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033422 5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMETS 84 (119)
Q Consensus 5 c~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt~ 84 (119)
+++++|++++++||++||+|+||+|||++|+.+|+++..+ +++.|+++ + ++++|+++|++|+.+|+.||.|||
T Consensus 12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~---~~~~~~~~---~-~~~l~l~~S~~L~~~m~~R~~~t~ 84 (108)
T 2loo_A 12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYG---AYRVSNDK---R-DVKVSLFTAFFLATIMGVRFKRSK 84 (108)
Confidence 5899999999999999999999999999999999987444 45555543 2 788999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHh
Q 033422 85 KIMPAGIVAGISALMTGFYLYKIA 108 (119)
Q Consensus 85 K~mPaGl~~~ls~~~~~~y~~~l~ 108 (119)
|+||+|+++++|++|++||+|+++
T Consensus 85 K~mPaGl~a~lS~~m~~~y~~~l~ 108 (108)
T 2loo_A 85 KIMPAGLVAGLSLMMILRLVLLLL 108 (108)
Confidence 999999999999999999999874
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-30 Score=184.46 Aligned_cols=101 Identities=30% Similarity=0.483 Sum_probs=89.5
Q ss_pred ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033422 4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVSAGYLSLKAFEKKKNSYFAIVIETVCAALLTAVMAQRYMET 83 (119)
Q Consensus 4 fc~~~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~ll~ag~~~~~~~~~~~~~~~~~~~~~~~s~~L~~~m~~R~~kt 83 (119)
-+++++||+++++||++||+|+||+|||+||+.+|+++..++| +.|+++++ .++++++|++|+.+|+.||.||
T Consensus 20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~---~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t 92 (121)
T 2los_A 20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAY---QLSQDPRN----VWVFLATSGTLAGIMGMRFYHS 92 (121)
Confidence 4589999999999999999999999999999999998655544 55655443 4678899999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhCC
Q 033422 84 SKIMPAGIVAGISALMTGFYLYKIATGG 111 (119)
Q Consensus 84 ~K~mPaGl~~~ls~~~~~~y~~~l~~~~ 111 (119)
||+||+|+++++|++|++||.+++++.+
T Consensus 93 ~K~mPaGlva~lS~~m~~~~~~~ll~~~ 120 (121)
T 2los_A 93 GKFMPAGLIAGASLLMVAKVGVSMFNRP 120 (121)
Confidence 9999999999999999999999998754
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=38.40 E-value=45 Score=17.57 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 033422 89 AGIVAGISALMTGFYLYKIAT 109 (119)
Q Consensus 89 aGl~~~ls~~~~~~y~~~l~~ 109 (119)
+|+++.+..+...|..++.+.
T Consensus 10 aglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 10 AGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888887777653
No 4
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=37.24 E-value=1.2e+02 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKK 55 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~ 55 (119)
.|=.+.++..|+.+..+|...+...|++
T Consensus 79 lPR~l~a~lvGaaLavsG~~~Q~~~rNP 106 (357)
T 4g1u_A 79 LPRVLLAVVVGCALAVSGTIMQGLFRNP 106 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4677888999999999999887777765
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.82 E-value=82 Score=17.87 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=8.1
Q ss_pred CChhHhHHHHHHHHH
Q 033422 26 GSTASLAGGVGTGLL 40 (119)
Q Consensus 26 gS~~SLiaG~~~G~~ 40 (119)
...+++.+|++.|.+
T Consensus 8 s~~~~IA~gVVgGv~ 22 (44)
T 2ks1_B 8 PKIPSIATGMVGALL 22 (44)
T ss_dssp SCSSSSTHHHHHHHH
T ss_pred CCcceEEeehhHHHH
Confidence 344565556555554
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.59 E-value=95 Score=19.33 Aligned_cols=17 Identities=41% Similarity=0.403 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033422 32 AGGVGTGLLLVSAGYLS 48 (119)
Q Consensus 32 iaG~~~G~~ll~ag~~~ 48 (119)
+.|+++++++.+.|..+
T Consensus 19 igGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHH
Confidence 46788888887777765
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=19.04 E-value=99 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033422 32 AGGVGTGLLLVSAGYLS 48 (119)
Q Consensus 32 iaG~~~G~~ll~ag~~~ 48 (119)
+.|+++++++.+.|..+
T Consensus 18 iGGLifA~vLfi~GI~i 34 (72)
T 2jo1_A 18 IGGLVIAGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH
Confidence 45777888777777654
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.44 E-value=1e+02 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033422 32 AGGVGTGLLLVSAGYLSL 49 (119)
Q Consensus 32 iaG~~~G~~ll~ag~~~~ 49 (119)
+.|+++++++.+.|..+.
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 568888888888888764
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.81 E-value=1.5e+02 Score=16.76 Aligned_cols=13 Identities=46% Similarity=0.600 Sum_probs=6.0
Q ss_pred hhHhHHHHHHHHH
Q 033422 28 TASLAGGVGTGLL 40 (119)
Q Consensus 28 ~~SLiaG~~~G~~ 40 (119)
.+++.+|++-|.+
T Consensus 9 ~~aIA~gVVgGv~ 21 (44)
T 2l2t_A 9 TPLIAAGVIGGLF 21 (44)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cceEEEeehHHHH
Confidence 4554445444443
No 10
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=15.86 E-value=3.9e+02 Score=20.59 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=22.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 033422 27 STASLAGGVGTGLLLVSAGYLSLKAFEKK 55 (119)
Q Consensus 27 S~~SLiaG~~~G~~ll~ag~~~~~~~~~~ 55 (119)
-.|-+++++..|+.+..+|...+...+|+
T Consensus 56 RlPR~l~a~lvG~~La~sG~~~Q~l~rNp 84 (326)
T 2qi9_A 56 RLPRTLAVLLVGAALAISGAVMQALFENP 84 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34778888888998888888876666654
Done!