Query 033422
Match_columns 119
No_of_seqs 109 out of 330
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 22:59:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 56.6 17 0.0012 26.6 7.0 28 28-55 57-84 (324)
2 d1v54b2 f.17.2.1 (B:1-90) Mito 27.0 15 0.0011 22.1 1.9 26 2-27 24-49 (90)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.9 39 0.0029 20.5 1.0 22 2-23 35-56 (107)
4 d1v54c_ f.25.1.1 (C:) Mitochon 5.8 4.1E+02 0.03 17.9 5.6 34 8-41 18-51 (259)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 5.7 1.2E+02 0.0088 17.7 1.5 19 2-20 29-47 (100)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.4 4.5E+02 0.033 17.8 9.1 7 83-89 47-53 (248)
7 d2p06a1 a.204.1.3 (A:1-84) Hyp 4.1 1.9E+02 0.014 16.5 1.6 17 99-115 14-31 (84)
8 d1r5la1 a.5.3.1 (A:25-90) Alph 4.1 1.9E+02 0.014 15.6 1.5 14 76-89 27-40 (66)
9 d1lwba_ a.133.1.3 (A:) Prokary 3.5 61 0.0044 20.6 -1.3 5 1-5 63-67 (122)
10 d1sdia_ a.198.1.1 (A:) Hypothe 3.3 4.9E+02 0.036 17.4 3.5 26 40-65 169-194 (213)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=56.58 E-value=17 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 033422 28 TASLAGGVGTGLLLVSAGYLSLKAFEKK 55 (119)
Q Consensus 28 ~~SLiaG~~~G~~ll~ag~~~~~~~~~~ 55 (119)
.|-+++++..|+.+..+|+..|...|++
T Consensus 57 lPR~l~a~l~Ga~La~sG~~lQ~~~rNp 84 (324)
T d1l7va_ 57 LPRTLAVLLVGAALAISGAVMQALFENP 84 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999988877775
No 2
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.97 E-value=15 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.6
Q ss_pred ccccchHHHHHHHHhhhhhHhhhcCC
Q 033422 2 HDFCFTIPYGLILIGGGIVGFAKKGS 27 (119)
Q Consensus 2 ~Dfc~~~~yg~ll~~GGi~Gy~k~gS 27 (119)
||+++.+...++..+..++.+...+.
T Consensus 24 Hd~~m~i~~~I~~~V~~~~~~~~~~~ 49 (90)
T d1v54b2 24 HDHTLMIVFLISSLVLYIISLMLTTK 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89888888777777777777666554
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.86 E-value=39 Score=20.53 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=11.8
Q ss_pred ccccchHHHHHHHHhhhhhHhh
Q 033422 2 HDFCFTIPYGLILIGGGIVGFA 23 (119)
Q Consensus 2 ~Dfc~~~~yg~ll~~GGi~Gy~ 23 (119)
||+-+.+....++.+.|++-|+
T Consensus 35 h~~v~~i~~~I~~~V~~~~~~~ 56 (107)
T d3ehbb2 35 DHFVLYIITAVTIFVCLLLLIC 56 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5655555555555555554443
No 4
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.79 E-value=4.1e+02 Score=17.86 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHH
Q 033422 8 IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLL 41 (119)
Q Consensus 8 ~~yg~ll~~GGi~Gy~k~gS~~SLiaG~~~G~~l 41 (119)
...+++...-|...|+..++...++.|++.-...
T Consensus 18 ~s~~~~~~~~g~~~~~~~~~~~~~~~gl~~~~~~ 51 (259)
T d1v54c_ 18 GALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLT 51 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5567777778888899988888888876655543
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.69 E-value=1.2e+02 Score=17.71 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=7.7
Q ss_pred ccccchHHHHHHHHhhhhh
Q 033422 2 HDFCFTIPYGLILIGGGIV 20 (119)
Q Consensus 2 ~Dfc~~~~yg~ll~~GGi~ 20 (119)
||+-+.+....++.+.+++
T Consensus 29 ~~~v~~i~~~I~~~V~~~l 47 (100)
T d3dtub2 29 DGFILVIIAAITIFVTLLI 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.37 E-value=4.5e+02 Score=17.82 Aligned_cols=7 Identities=14% Similarity=-0.035 Sum_probs=4.1
Q ss_pred hCCCccH
Q 033422 83 TSKIMPA 89 (119)
Q Consensus 83 t~K~mPa 89 (119)
++|..|.
T Consensus 47 s~r~~p~ 53 (248)
T d2r6gf1 47 NRKAYAW 53 (248)
T ss_dssp SSCCTTH
T ss_pred ccCccce
Confidence 5566664
No 7
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.15 E-value=1.9e+02 Score=16.54 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCC-CCC
Q 033422 99 MTGFYLYKIATGGN-QIP 115 (119)
Q Consensus 99 ~~~~y~~~l~~~~~-~~p 115 (119)
|-+-|..++..++| ++|
T Consensus 14 mhakymkrvsrpgntprp 31 (84)
T d2p06a1 14 MHAKYMKRVSRPGNTPRP 31 (84)
T ss_dssp HHHHHHHHHTSTTCCSCH
T ss_pred HHHHHHHHccCCCCCCCC
Confidence 55678888888888 443
No 8
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.09 E-value=1.9e+02 Score=15.63 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=10.9
Q ss_pred HHHHHHhhCCCccH
Q 033422 76 MAQRYMETSKIMPA 89 (119)
Q Consensus 76 m~~R~~kt~K~mPa 89 (119)
+..||++.+|+=+.
T Consensus 27 ~LlrFLRarkf~~~ 40 (66)
T d1r5la1 27 FLLRFLRARDFDLD 40 (66)
T ss_dssp HHHHHHHHTTTCHH
T ss_pred HHHHHHHHccCCHH
Confidence 56789999998654
No 9
>d1lwba_ a.133.1.3 (A:) Prokaryotic phospholipase A2 {Streptomyces violaceoruber [TaxId: 1935]}
Probab=3.55 E-value=61 Score=20.63 Aligned_cols=5 Identities=60% Similarity=0.933 Sum_probs=0.0
Q ss_pred Ccccc
Q 033422 1 MHDFC 5 (119)
Q Consensus 1 ~~Dfc 5 (119)
+||||
T Consensus 63 rHD~g 67 (122)
T d1lwba_ 63 RHDFG 67 (122)
T ss_dssp HHHHH
T ss_pred hhhHH
No 10
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=3.32 E-value=4.9e+02 Score=17.36 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcCChhHHHHHH
Q 033422 40 LLVSAGYLSLKAFEKKKNSYFAIVIE 65 (119)
Q Consensus 40 ~ll~ag~~~~~~~~~~~~~~~~~~~~ 65 (119)
+++.+|..+.--|++-..++|-...+
T Consensus 169 ALLLAGIRaavLWrQ~GG~Rwqllf~ 194 (213)
T d1sdia_ 169 ATLLAGIRAAVLWHQVGGGRLQLMFS 194 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHHhh
Done!