BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033423
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN+ CA V+VA +GF
Sbjct: 504 HWTGCPNS-CAQVQVADIGF 522
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN CA V+VA +GF
Sbjct: 506 HWTGCPNT-CAQVQVADIGF 524
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 64 YWCGCPNALCAGVKVAKLGF 83
+W GCPN+ C V+VA +GF
Sbjct: 524 HWTGCPNS-CGQVQVADIGF 542
>pdb|1PCE|A Chain A, Solution Structure And Dynamics Of Pec-60, A Protein Of
The Kazal Type Inhibitor Family, Determined By Nuclear
Magnetic Resonance Spectroscopy
Length = 60
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 54 DPVCGVDGVTYWCGCPNALC-----AGVKVAKLGFC 84
DPVCG DGVTY C L +++ K G C
Sbjct: 25 DPVCGTDGVTYESECKLCLARIENKQDIQIVKDGEC 60
>pdb|1Y1B|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
Length = 48
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 42 KPELCPINC-FRPDPVCGVDGVTYWCGC 68
KP+ CP+ C + DPVCG DG+TY C
Sbjct: 1 KPD-CPLICTMQYDPVCGSDGITYGNAC 27
>pdb|1Y1C|A Chain A, Solution Structure Of Anemonia Elastase Inhibitor
Analogue
Length = 48
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 42 KPELCPINCFRPDPVCGVDGVTYWCGCPNALCAGVK 77
KP+ I + DPVCG DG+TY C LCA +
Sbjct: 1 KPDAPCICTMQYDPVCGSDGITYGNAC-MLLCASAR 35
>pdb|1Z7K|B Chain B, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
Length = 62
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 54 DPVCGVDGVTYWCGCPNALCA 74
+PVCG DGVTY C LCA
Sbjct: 27 NPVCGTDGVTYDNEC--VLCA 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,811,355
Number of Sequences: 62578
Number of extensions: 101360
Number of successful extensions: 243
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 19
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)