BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033424
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 106/115 (92%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 3 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 62
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 63 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 106/115 (92%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 2 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 61
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 62 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 106/115 (92%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++P+RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 105/115 (91%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 105/115 (91%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 4 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 63
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 64 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/115 (73%), Positives = 105/115 (91%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K++FK E+P E+R+AE+ RI D++ +RIPVI E+AEKSD+PEIDK+KYLVPADLTVGQFV
Sbjct: 5 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFV 64
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
YV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct: 65 YVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 149 bits (375), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 91/115 (79%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K +K EH E+R+AE +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF
Sbjct: 10 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 69
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+++RKRI L PE A+F FV N++PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 70 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 148 bits (374), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K FK +H LE R E+A+IR KYPDR+PVIVE+ S + +IDK+KYLVP+D+TV QF+
Sbjct: 2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+++RKRI+L EKAIF+FV +P ++ M +YE+ +DEDGFLY+ YSGENTFG
Sbjct: 62 WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 90/113 (79%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 66 RKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118
RKRI L E A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G+
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 119
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 90/113 (79%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 7 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 66
Query: 66 RKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118
RKRI L E A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G+
Sbjct: 67 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 119
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 145 bits (365), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 90/113 (79%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVV 65
+K EHP E+R++E +IR KYPDR+PVIVE+A K+ + ++DKKKYLVP+DLTVGQF +++
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLI 64
Query: 66 RKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118
RKRI L E A+F FV N++PPT+A M +Y+E+ +ED FLY+ YS E+ +G+
Sbjct: 65 RKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 87/113 (76%)
Query: 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFV 62
K +K +HP E R+ E +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF
Sbjct: 6 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFY 65
Query: 63 YVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENT 115
+++RKRI L PE A+F FV N +PPT+A M +YE+N +ED FLY+ YS E+
Sbjct: 66 FLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESV 118
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 89/114 (78%)
Query: 4 NSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVY 63
+ +K+ H E RQ++AA++R+++PDR+P+I E+ SD+ E+D+ K+LVP+DLTVGQFV
Sbjct: 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVS 65
Query: 64 VVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
V+RKR++L E A+F++ + + P++A M+ IY + +DEDGFLYM YSGE TFG
Sbjct: 66 VLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 84/107 (78%)
Query: 5 SFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYV 64
+K +HP E R+ E +IR KYPDR+PVIVE+A K+ VP++DK+KYLVP+DLTVGQF ++
Sbjct: 3 QYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFL 62
Query: 65 VRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111
+RKRI L PE A+F FV N +PPT+A M +YE+N +ED FLY+ YS
Sbjct: 63 IRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Query: 1 MAKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQ 60
M S K E E R AE +IR KYP+RIPV++ERA +S++P I+KKK+LVP ++ VG+
Sbjct: 3 MGMPSLKDEVSFENRVAETHKIRSKYPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGE 62
Query: 61 FVYVVRKRI---------KLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111
F +++ + I KL E+ I++FV NI+P T +M +YE +DEDG+LYM YS
Sbjct: 63 FKFILHQHINQSAYGSNMKLFRERTIYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYS 122
Query: 112 GENTFG 117
E++ G
Sbjct: 123 SESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSD-VPEIDKKKYLVPADLTVGQFVYV 64
FK L RQ E A IR K+P++IPV+VER + +P +DK K+LVP +LT+ QF+ +
Sbjct: 15 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 74
Query: 65 VRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+R R+ L +A ++ V N L +A M+ IY + +DEDGF+YMTY+ + TFG
Sbjct: 75 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 6 FKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQFVYV 64
FK R E +IRD++P +IPVI+ER + + +P +DK K+LVP + + + V +
Sbjct: 8 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 67
Query: 65 VRKRIKLSPEKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+R+R++L+P +A F+ V ++ + + ++ IYE+ +DEDGFLYM Y+ + TFG
Sbjct: 68 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 4 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 63
Query: 61 FVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+ ++R+R++L+ +A F+ V + + + +S +YE RDEDGFLYM Y+ + TFG
Sbjct: 64 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+ ++R+R++L+ +A F+ V + + + +S +YE RDEDGFLYM Y+ + TFG
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+ ++R+R++L+ +A F+ V + + + +S +YE RDEDGFLYM Y+ + TFG
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 8 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 67
Query: 61 FVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118
+ ++R+R++L+ +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG+
Sbjct: 68 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAE-KSDVPEIDKKKYLVPADLTVGQ 60
++ +FK E+R + IR+++P +IPVI+ER + + +P +DK K+LVP + + +
Sbjct: 3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSE 62
Query: 61 FVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117
+ ++R+R++L+ +A F+ V + + + +S +YE +DEDGFLYM Y+ + TFG
Sbjct: 63 LIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 40 SDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEEN 99
D P + KK+ V T+ + ++K +KL + +FI+V P+ E
Sbjct: 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYEC 73
Query: 100 RDEDGFLYMTYSGENTFG 117
DG L + Y +G
Sbjct: 74 FGSDGKLVLHYCKSQAWG 91
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 35 ERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSA 94
E E S++ + KY+ P V F + + E+ + F+KN PPT+ ++
Sbjct: 85 EPGENSEI--LPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGT 142
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 74 EKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLY 107
EKAI IF KN Y+E +D D FLY
Sbjct: 696 EKAIEIFAKN------------YDEFKDSDAFLY 717
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 12/34 (35%)
Query: 74 EKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLY 107
EKAI IF KN Y+E +D D FLY
Sbjct: 673 EKAIEIFAKN------------YDEFKDSDAFLY 694
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 37 AEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPP--------- 87
AEK ++ + K+ PA Q + + L + FV NI PP
Sbjct: 66 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRN 125
Query: 88 TAAMMSAIYEE----NRDE 102
+ ++ +YE NRD
Sbjct: 126 SKSVTDGVYETSFLVNRDH 144
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 37 AEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPP--------- 87
AEK ++ + K+ PA Q + + L + FV NI PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRN 128
Query: 88 TAAMMSAIYEE----NRDE 102
+ ++ +YE NRD
Sbjct: 129 SKSVTDGVYETSFLVNRDH 147
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 37 AEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPP--------- 87
AEK ++ + K+ PA Q + + L + FV NI PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRN 128
Query: 88 TAAMMSAIYEE----NRDE 102
+ ++ +YE NRD
Sbjct: 129 SKSVTDGVYETSFLVNRDH 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,481,460
Number of Sequences: 62578
Number of extensions: 130642
Number of successful extensions: 378
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 37
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)