Query 033424
Match_columns 119
No_of_seqs 116 out of 364
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 6.3E-56 2.2E-60 311.5 13.6 116 2-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 6.4E-56 2.2E-60 314.0 12.3 117 2-118 9-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.4E-54 4.8E-59 305.0 11.6 114 4-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 6.2E-53 2.1E-57 295.8 12.3 117 2-118 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 9.1E-53 3.1E-57 299.7 10.2 116 2-118 9-126 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 3.2E-48 1.1E-52 269.1 11.8 110 3-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 2.2E-35 7.6E-40 198.7 9.9 85 32-117 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 3.8E-35 1.3E-39 199.3 8.6 85 27-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 2.9E-33 1E-37 188.4 9.1 85 27-117 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 96.1 0.0088 3E-07 47.1 5.5 98 10-111 183-285 (297)
11 4gdk_B Autophagy protein 5; pr 95.8 0.029 1E-06 43.6 7.5 83 28-111 183-270 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.8 0.0088 3E-07 46.5 4.2 74 26-109 196-272 (274)
13 3goe_A DNA repair protein RAD6 94.7 0.043 1.5E-06 35.5 4.3 47 47-93 21-67 (82)
14 3a4r_A Nfatc2-interacting prot 88.1 2.4 8.2E-05 26.2 6.7 63 27-95 5-67 (79)
15 2k8h_A Small ubiquitin protein 85.7 3.9 0.00013 27.2 7.1 62 27-95 24-85 (110)
16 1oey_A P67-PHOX, neutrophil cy 84.7 2.4 8.1E-05 27.2 5.3 58 50-109 18-79 (83)
17 1wh3_A 59 kDa 2'-5'-oligoadeny 83.8 4.4 0.00015 24.6 6.3 75 27-112 5-80 (87)
18 2uyz_B Small ubiquitin-related 83.7 2.8 9.6E-05 25.1 5.2 60 48-111 16-75 (79)
19 2io0_B Small ubiquitin-related 80.9 2.1 7.2E-05 27.4 4.0 61 28-95 4-64 (91)
20 1wyw_B Ubiquitin-like protein 80.4 4.9 0.00017 25.4 5.7 75 27-111 19-93 (97)
21 1wy8_A NP95-like ring finger p 79.3 4.5 0.00015 24.7 5.1 57 52-112 26-82 (89)
22 1uh6_A Ubiquitin-like 5; beta- 78.1 6.4 0.00022 25.8 5.8 59 49-111 42-100 (100)
23 1we6_A Splicing factor, putati 77.1 7.5 0.00026 25.1 6.0 80 22-111 20-103 (111)
24 4dwf_A HLA-B-associated transc 76.8 3.8 0.00013 25.2 4.2 75 27-112 3-77 (90)
25 2dzi_A Ubiquitin-like protein 76.6 5.7 0.0002 23.5 4.9 60 28-94 6-65 (81)
26 3mtn_B UBA80, ubcep1, ubiquiti 76.4 3.1 0.0001 25.0 3.6 59 49-111 17-75 (85)
27 2hj8_A Interferon-induced 17 k 75.9 9.3 0.00032 23.5 5.9 60 49-112 18-77 (88)
28 1we7_A SF3A1 protein; structur 75.5 14 0.00047 24.0 7.7 86 22-112 18-108 (115)
29 3a9j_A Ubiquitin; protein comp 74.2 3.8 0.00013 23.9 3.6 58 49-111 14-72 (76)
30 3n3k_B Ubiquitin; hydrolase, p 73.8 2.9 9.9E-05 25.2 3.0 60 49-112 17-76 (85)
31 4eew_A Large proline-rich prot 73.7 5 0.00017 24.5 4.2 62 26-94 14-75 (88)
32 1ndd_A NEDD8, protein (ubiquit 72.7 4.5 0.00015 23.5 3.7 58 49-111 14-72 (76)
33 2jxx_A Nfatc2-interacting prot 71.9 17 0.0006 23.5 7.2 64 26-95 22-85 (97)
34 2kvr_A Ubiquitin carboxyl-term 71.9 3.5 0.00012 28.3 3.3 54 48-101 58-119 (130)
35 1yqb_A Ubiquilin 3; structural 70.5 6.9 0.00024 25.0 4.4 75 27-112 20-94 (100)
36 3v6c_B Ubiquitin; structural g 68.4 8.4 0.00029 23.7 4.4 56 49-109 31-87 (91)
37 2l7r_A Ubiquitin-like protein 68.3 12 0.0004 23.4 5.1 72 27-110 17-88 (93)
38 3dbh_I NEDD8; cell cycle, acti 68.1 4.9 0.00017 24.3 3.2 58 49-110 26-83 (88)
39 3phx_B Ubiquitin-like protein 68.0 7.3 0.00025 23.1 3.9 58 49-110 18-75 (79)
40 1ip9_A BEM1 protein; ubiquitin 67.3 5.9 0.0002 25.6 3.4 30 50-80 26-55 (85)
41 1wx7_A Ubiquilin 3; ubiquitin- 67.1 14 0.00047 23.5 5.4 59 49-112 30-89 (106)
42 3plu_A Ubiquitin-like modifier 66.9 8.4 0.00029 25.1 4.2 81 19-110 11-92 (93)
43 2bwf_A Ubiquitin-like protein 66.2 7.8 0.00027 22.7 3.7 57 49-110 17-74 (77)
44 2kk8_A Uncharacterized protein 66.1 8.3 0.00028 23.8 4.0 58 49-110 24-82 (84)
45 3k9o_B Ubiquitin, UBB+1; E2-25 65.6 6.9 0.00024 24.2 3.6 60 49-112 15-74 (96)
46 2kan_A Uncharacterized protein 65.4 12 0.00041 23.5 4.7 75 27-112 13-88 (94)
47 1yx5_B Ubiquitin; proteasome, 65.2 7.1 0.00024 24.5 3.6 60 49-113 14-74 (98)
48 2eke_C Ubiquitin-like protein 64.9 6.6 0.00023 25.9 3.5 48 47-95 42-89 (106)
49 2wyq_A HHR23A, UV excision rep 64.9 19 0.00067 21.4 6.5 77 27-114 3-83 (85)
50 1wx8_A Riken cDNA 4931431F19; 63.3 14 0.00048 22.9 4.7 72 28-111 16-88 (96)
51 1vd2_A Protein kinase C, IOTA 63.1 27 0.00092 22.4 7.1 61 48-108 18-86 (89)
52 2faz_A Ubiquitin-like containi 62.7 6.3 0.00021 23.4 2.8 56 50-110 18-75 (78)
53 4fbj_B NEDD8; effector-HOST ta 62.3 8.3 0.00028 23.8 3.4 60 49-112 14-73 (88)
54 2kd0_A LRR repeats and ubiquit 61.0 7.2 0.00024 24.1 2.9 56 50-110 26-82 (85)
55 1wm3_A Ubiquitin-like protein 60.8 15 0.0005 21.9 4.3 48 47-95 13-60 (72)
56 1wju_A NEDD8 ultimate buster-1 60.7 15 0.00052 23.9 4.6 46 48-94 32-77 (100)
57 1sif_A Ubiquitin; hydrophobic 60.5 8.4 0.00029 23.7 3.2 58 49-111 23-81 (88)
58 4hcn_B Polyubiquitin, ubiquiti 60.3 8.3 0.00028 24.3 3.2 73 27-110 20-93 (98)
59 4a3p_A Ubiquitin carboxyl-term 60.3 23 0.0008 25.7 6.1 60 49-111 143-208 (217)
60 1ttn_A DC-UBP, dendritic cell- 60.2 23 0.0008 22.5 5.5 60 49-113 37-97 (106)
61 2io1_B Small ubiquitin-related 60.0 14 0.00048 23.5 4.3 61 28-95 6-66 (94)
62 1x1m_A Ubiquitin-like protein 58.9 29 0.00099 22.1 5.8 54 55-112 44-100 (107)
63 2lxa_A Ubiquitin-like protein 58.3 21 0.00073 22.3 4.9 43 52-95 20-63 (87)
64 2ojr_A Ubiquitin; lanthide-bin 57.9 14 0.00049 23.8 4.1 58 49-111 49-107 (111)
65 1yfb_A Transition state regula 57.5 9.1 0.00031 22.7 2.8 21 63-83 28-48 (59)
66 2fnj_B Transcription elongatio 57.1 35 0.0012 22.9 6.1 63 51-116 17-85 (118)
67 2e5i_A Heterogeneous nuclear r 57.1 13 0.00045 24.8 3.9 30 72-101 21-51 (124)
68 1v5t_A 8430435I17RIK protein; 56.9 21 0.00073 22.0 4.7 60 51-113 23-84 (90)
69 2diu_A KIAA0430 protein; struc 56.7 14 0.00046 24.2 3.8 43 71-114 5-57 (96)
70 3m63_B Ubiquitin domain-contai 56.1 6.3 0.00022 25.3 2.1 62 26-95 25-86 (101)
71 3b08_A Polyubiquitin-C, ubiqui 56.0 28 0.00096 22.8 5.5 58 49-111 90-148 (152)
72 1wgd_A Homocysteine-responsive 55.2 22 0.00075 21.9 4.6 76 28-111 6-85 (93)
73 4dbg_A Ranbp-type and C3HC4-ty 55.0 21 0.00071 23.5 4.6 46 48-94 39-84 (105)
74 2klc_A Ubiquilin-1; ubiquitin- 53.8 12 0.00041 23.8 3.2 74 27-112 23-97 (101)
75 2kc2_A Talin-1, F1; FERM, adhe 53.5 25 0.00087 24.0 5.0 40 42-82 18-57 (128)
76 3vdz_A Ubiquitin-40S ribosomal 53.2 14 0.00048 23.9 3.5 59 49-111 49-107 (111)
77 2l66_A SSO7C4, transcriptional 52.2 13 0.00044 21.1 2.8 21 63-83 18-38 (53)
78 2d07_B Ubiquitin-like protein 51.7 27 0.00091 22.0 4.6 62 27-95 15-76 (93)
79 3rt3_B Ubiquitin-like protein 51.3 15 0.00052 24.7 3.6 60 49-111 16-76 (159)
80 3b1l_X E3 ubiquitin-protein li 56.4 3.2 0.00011 24.5 0.0 45 50-95 15-59 (76)
81 1wz0_A Ubiquitin-like protein 50.9 30 0.001 22.4 4.8 61 28-95 23-83 (104)
82 1wjn_A Tubulin-folding protein 50.3 20 0.0007 22.4 3.8 32 50-81 27-59 (97)
83 1j8c_A Ubiquitin-like protein 50.1 18 0.00063 24.0 3.8 58 49-111 45-103 (125)
84 2i1s_A Hypothetical protein; m 49.9 42 0.0014 23.7 5.9 29 47-75 23-51 (188)
85 3m62_B UV excision repair prot 49.9 8.5 0.00029 24.8 2.0 60 49-112 15-74 (106)
86 1mvf_D MAZE protein, PEMI-like 49.3 11 0.00038 23.1 2.4 38 63-100 19-63 (82)
87 1v5o_A 1700011N24RIK protein; 49.3 14 0.00048 23.4 2.9 57 50-110 26-83 (102)
88 2kdi_A Ubiquitin, vacuolar pro 46.2 14 0.00048 24.1 2.6 60 49-113 23-83 (114)
89 1wxv_A BAG-family molecular ch 46.1 30 0.001 21.1 4.1 74 28-113 6-86 (92)
90 2dzm_A FAS-associated factor 1 45.6 31 0.001 22.3 4.2 59 50-112 23-82 (100)
91 3rt3_B Ubiquitin-like protein 44.3 41 0.0014 22.5 4.9 59 49-111 95-153 (159)
92 1pqs_A Cell division control p 44.1 15 0.00052 22.9 2.4 23 50-72 6-28 (77)
93 1v6e_A Cytoskeleton-associated 44.0 55 0.0019 20.2 5.9 48 28-80 6-54 (95)
94 1x5p_A Negative elongation fac 43.3 27 0.00093 21.1 3.6 35 79-114 18-60 (97)
95 3b08_A Polyubiquitin-C, ubiqui 43.1 25 0.00085 23.1 3.6 58 49-111 14-72 (152)
96 1v86_A DNA segment, CHR 7, way 41.2 17 0.00058 22.8 2.4 45 49-95 30-74 (95)
97 1q1o_A Cell division control p 40.8 13 0.00044 24.5 1.7 25 48-72 25-49 (98)
98 2kdb_A Homocysteine-responsive 40.6 22 0.00074 22.8 2.8 65 27-97 21-88 (99)
99 2bz2_A Negative elongation fac 40.4 25 0.00087 22.7 3.2 35 79-114 42-84 (121)
100 1uel_A HHR23B, UV excision rep 39.6 47 0.0016 20.4 4.3 60 49-113 14-77 (95)
101 3u5e_m 60S ribosomal protein L 37.8 6.8 0.00023 26.1 0.0 45 50-95 15-59 (128)
102 1j0g_A Hypothetical protein 18 36.4 84 0.0029 20.1 6.3 57 44-101 22-79 (92)
103 1sjr_A Polypyrimidine tract-bi 36.3 58 0.002 22.9 4.7 42 72-113 42-94 (164)
104 3nyi_A FAT acid-binding protei 36.2 60 0.0021 24.6 5.2 59 46-113 35-95 (297)
105 2kjr_A CG11242; UBL, ubiquitin 36.1 80 0.0027 19.8 7.9 64 27-94 13-81 (95)
106 3zzy_A Polypyrimidine tract-bi 35.9 34 0.0011 23.1 3.3 33 69-101 21-54 (130)
107 3d2w_A TAR DNA-binding protein 35.9 40 0.0014 20.3 3.4 37 78-114 13-59 (89)
108 2kj6_A Tubulin folding cofacto 35.7 83 0.0028 19.9 8.2 63 28-94 13-81 (97)
109 3fdj_A DEGV family protein; GU 35.6 55 0.0019 24.6 4.8 54 47-113 33-86 (278)
110 4b6w_A Tubulin-specific chaper 34.6 34 0.0011 21.2 2.9 44 50-93 19-68 (86)
111 2l32_A Small archaeal modifier 34.4 33 0.0011 20.8 2.8 37 49-90 14-50 (74)
112 3kyd_D Small ubiquitin-related 33.9 82 0.0028 20.9 5.0 62 27-95 38-99 (115)
113 3u30_A Ubiquitin, linear DI-ub 33.4 44 0.0015 22.8 3.7 58 49-111 34-92 (172)
114 1x4c_A Splicing factor, argini 33.3 58 0.002 20.1 4.0 36 79-114 18-61 (108)
115 2ylm_A Ubiquitin carboxyl-term 33.0 41 0.0014 27.8 4.0 60 49-110 150-216 (530)
116 1pzx_A Hypothetical protein AP 32.6 63 0.0021 24.4 4.7 57 46-113 35-92 (289)
117 1ryj_A Unknown; beta/alpha pro 32.4 44 0.0015 19.7 3.1 37 49-90 17-53 (70)
118 3u5c_f 40S ribosomal protein S 32.1 9.6 0.00033 26.6 0.0 45 50-95 15-59 (152)
119 3l0w_B Monoubiquitinated proli 31.3 63 0.0022 22.4 4.3 59 49-111 14-72 (169)
120 2daf_A FLJ35834 protein; hypot 30.7 55 0.0019 22.1 3.7 58 49-111 30-88 (118)
121 2pjh_A Protein NPL4, nuclear p 30.4 25 0.00086 21.5 1.8 29 51-79 19-48 (80)
122 2kzr_A Ubiquitin thioesterase 30.0 45 0.0015 20.2 2.9 57 52-112 17-78 (86)
123 4efo_A Serine/threonine-protei 29.3 84 0.0029 20.2 4.3 36 48-83 26-61 (94)
124 2cqh_A IGF-II mRNA-binding pro 29.1 42 0.0014 19.9 2.7 10 91-100 24-33 (93)
125 3beg_B Splicing factor, argini 28.7 46 0.0016 21.0 2.9 36 79-114 19-62 (115)
126 2rdm_A Response regulator rece 28.7 51 0.0017 20.0 3.1 54 17-72 68-124 (132)
127 2wbr_A GW182, gawky, LD47780P; 28.3 88 0.003 19.9 4.2 38 76-113 7-53 (89)
128 1wf0_A TDP-43, TAR DNA-binding 28.2 28 0.00095 20.6 1.7 26 89-114 19-53 (88)
129 2ylm_A Ubiquitin carboxyl-term 28.2 22 0.00075 29.5 1.5 51 47-97 353-410 (530)
130 3tix_A Ubiquitin-like protein 27.5 36 0.0012 25.3 2.4 60 28-95 56-115 (207)
131 3tuo_A DNA-binding protein SAT 27.1 53 0.0018 21.9 3.0 68 29-98 7-93 (105)
132 3gs2_A E3 ubiquitin-protein li 27.0 1.4E+02 0.0049 19.9 8.1 83 30-112 4-109 (111)
133 3q3f_A Ribonuclease/ubiquitin 26.8 52 0.0018 23.6 3.2 59 49-111 119-177 (189)
134 4a20_A Ubiquitin-like protein 26.2 39 0.0013 21.5 2.2 55 52-111 38-95 (98)
135 4ajy_B Transcription elongatio 25.9 49 0.0017 22.2 2.7 61 52-117 18-86 (118)
136 2div_A TRNA selenocysteine ass 25.8 75 0.0026 18.9 3.5 13 89-101 23-35 (99)
137 1v2y_A 3300001G02RIK protein; 25.7 23 0.0008 23.1 1.0 65 50-117 22-101 (105)
138 2w1t_A Spovt, stage V sporulat 25.5 51 0.0017 23.7 2.9 20 63-82 20-39 (178)
139 3jyu_A Ubiquitin carboxyl-term 24.9 59 0.002 23.7 3.2 59 50-111 156-220 (231)
140 3s5o_A 4-hydroxy-2-oxoglutarat 24.9 63 0.0022 24.5 3.5 99 10-113 64-180 (307)
141 2e5j_A Methenyltetrahydrofolat 24.8 94 0.0032 18.5 3.8 16 52-67 27-42 (97)
142 3pge_A SUMO-modified prolifera 24.2 57 0.002 23.8 3.0 49 27-82 27-75 (200)
143 3cmm_A Ubiquitin-activating en 24.1 77 0.0026 28.6 4.3 49 49-99 921-980 (1015)
144 3eb2_A Putative dihydrodipicol 23.8 47 0.0016 25.2 2.6 100 10-114 54-169 (300)
145 2krc_A DNA-directed RNA polyme 23.6 63 0.0022 21.0 2.8 48 54-117 28-76 (99)
146 2cq4_A RNA binding motif prote 23.5 1.1E+02 0.0039 18.7 4.1 12 103-114 67-78 (114)
147 3l21_A DHDPS, dihydrodipicolin 23.4 53 0.0018 25.0 2.8 99 10-113 65-179 (304)
148 2dt8_A DEGV family protein; fa 23.2 1.2E+02 0.0042 22.6 4.8 58 46-113 33-91 (280)
149 1wf1_A RNA-binding protein RAL 23.0 1.2E+02 0.0043 18.4 4.2 25 89-113 42-72 (110)
150 2al3_A TUG long isoform; TUG U 22.8 90 0.0031 20.0 3.4 33 43-75 17-49 (90)
151 2yxg_A DHDPS, dihydrodipicolin 22.7 57 0.0019 24.5 2.8 100 10-113 50-165 (289)
152 3h5d_A DHDPS, dihydrodipicolin 22.7 75 0.0026 24.2 3.6 98 10-112 57-171 (311)
153 3jr7_A Uncharacterized EGV fam 22.7 1.3E+02 0.0044 22.8 4.9 56 46-113 52-107 (298)
154 2l76_A Nfatc2-interacting prot 22.6 99 0.0034 20.0 3.6 48 47-95 32-79 (95)
155 3a5f_A Dihydrodipicolinate syn 22.6 58 0.002 24.4 2.9 30 10-39 51-80 (291)
156 2eki_A DRG 1, developmentally- 22.6 1.3E+02 0.0046 19.3 4.3 43 37-83 17-60 (93)
157 3e96_A Dihydrodipicolinate syn 22.5 57 0.0019 24.9 2.8 28 10-37 62-89 (316)
158 3qze_A DHDPS, dihydrodipicolin 22.3 59 0.002 24.8 2.9 29 10-38 73-101 (314)
159 3b4u_A Dihydrodipicolinate syn 22.3 78 0.0027 23.8 3.6 101 10-113 53-173 (294)
160 3flu_A DHDPS, dihydrodipicolin 22.2 60 0.002 24.5 2.9 30 9-38 56-85 (297)
161 2ehh_A DHDPS, dihydrodipicolin 22.2 59 0.002 24.4 2.8 101 9-113 49-165 (294)
162 2i2y_A Fusion protein consists 22.1 1.2E+02 0.004 19.7 4.1 37 78-114 75-121 (150)
163 3tak_A DHDPS, dihydrodipicolin 22.1 61 0.0021 24.3 2.9 30 9-38 50-79 (291)
164 3fkr_A L-2-keto-3-deoxyarabona 22.0 60 0.0021 24.7 2.9 30 10-39 58-87 (309)
165 2kmm_A Guanosine-3',5'-BIS(dip 22.0 61 0.0021 18.6 2.4 40 48-90 11-50 (73)
166 3cpr_A Dihydrodipicolinate syn 21.9 59 0.002 24.6 2.8 30 10-39 66-95 (304)
167 2ojp_A DHDPS, dihydrodipicolin 21.9 62 0.0021 24.3 2.9 30 10-39 51-80 (292)
168 1f6k_A N-acetylneuraminate lya 21.7 61 0.0021 24.3 2.8 30 10-39 54-83 (293)
169 1ug8_A Poly(A)-specific ribonu 21.6 61 0.0021 20.7 2.4 22 14-37 41-62 (87)
170 3na8_A Putative dihydrodipicol 21.5 55 0.0019 25.0 2.6 100 10-113 74-189 (315)
171 2wkj_A N-acetylneuraminate lya 21.3 62 0.0021 24.5 2.8 29 10-38 61-89 (303)
172 3daq_A DHDPS, dihydrodipicolin 21.2 65 0.0022 24.2 2.9 29 10-38 52-80 (292)
173 3d0c_A Dihydrodipicolinate syn 21.1 63 0.0022 24.6 2.8 29 10-38 62-90 (314)
174 1iqt_A AUF1, heterogeneous nuc 20.9 1.2E+02 0.0041 16.8 3.7 12 103-114 41-52 (75)
175 1xky_A Dihydrodipicolinate syn 20.8 67 0.0023 24.3 2.9 30 10-39 62-91 (301)
176 1wf9_A NPL4 family protein; be 20.7 1.4E+02 0.0047 18.8 4.1 60 49-114 20-97 (107)
177 3qij_A Protein 4.1; cytoskelet 20.6 1.7E+02 0.006 21.7 5.2 47 48-94 30-81 (296)
178 2rfg_A Dihydrodipicolinate syn 20.6 59 0.002 24.5 2.6 30 10-39 50-79 (297)
179 2r8w_A AGR_C_1641P; APC7498, d 20.5 66 0.0022 24.8 2.8 30 10-39 84-113 (332)
180 2hvz_A Splicing factor, argini 20.4 1.1E+02 0.0037 18.3 3.4 15 53-67 9-23 (101)
181 1o5k_A DHDPS, dihydrodipicolin 20.4 68 0.0023 24.3 2.9 100 10-113 62-177 (306)
182 2cq2_A Hypothetical protein LO 20.3 96 0.0033 20.2 3.3 39 73-113 24-73 (114)
183 3m5v_A DHDPS, dihydrodipicolin 20.3 68 0.0023 24.2 2.8 100 10-113 57-173 (301)
184 3ai5_A Yeast enhanced green fl 20.2 1.2E+02 0.0042 23.4 4.4 56 49-109 247-303 (307)
185 3rpf_C Molybdopterin convertin 20.1 38 0.0013 20.1 1.1 38 54-91 19-58 (74)
186 1t0y_A Tubulin folding cofacto 20.0 1.9E+02 0.0064 18.7 7.0 48 28-80 5-53 (122)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=6.3e-56 Score=311.50 Aligned_cols=116 Identities=73% Similarity=1.209 Sum_probs=112.5
Q ss_pred CCccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEE
Q 033424 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (119)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (119)
|+++||++||||+|++|+++||+|||++||||||+++++++|.|||+|||||+++||+||+.+||++|+|++++||||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhccCCCCeEEEEecCccccc
Q 033424 82 KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117 (119)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (119)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=6.4e-56 Score=314.00 Aligned_cols=117 Identities=56% Similarity=1.016 Sum_probs=114.1
Q ss_pred CCccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEE
Q 033424 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (119)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (119)
|+++||+++|||+|++|+++||+|||++||||||+++++++|.|||+|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhccCCCCeEEEEecCcccccC
Q 033424 82 KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118 (119)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (119)
||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 9999999999999999999999999999999999995
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.4e-54 Score=305.03 Aligned_cols=114 Identities=51% Similarity=0.969 Sum_probs=111.1
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC
Q 033424 4 NSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (119)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~ 83 (119)
++||++||||+|++|+++||+|||++||||||+++++++|.||++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhhccCCCCeEEEEecCccccc
Q 033424 84 ILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 117 (119)
Q Consensus 84 ~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (119)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=6.2e-53 Score=295.78 Aligned_cols=117 Identities=56% Similarity=1.009 Sum_probs=114.3
Q ss_pred CCccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEE
Q 033424 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV 81 (119)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~V 81 (119)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+|++++||||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhccCCCCeEEEEecCcccccC
Q 033424 82 KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118 (119)
Q Consensus 82 n~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (119)
|+.+|++|++||+||++|||+||||||+||+++|||+
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999999999999999999999995
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=9.1e-53 Score=299.67 Aligned_cols=116 Identities=35% Similarity=0.753 Sum_probs=113.7
Q ss_pred CCccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCC-CCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEE-
Q 033424 2 AKNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSD-VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFI- 79 (119)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~-~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl- 79 (119)
|+ +||++||||+|++|+++||++||+|||||||++++++ +|.|||+||+||+++||++|+.+||++|+|++++||||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 55 8999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhhccCCCCeEEEEecCcccccC
Q 033424 80 FVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGI 118 (119)
Q Consensus 80 ~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (119)
|||+++|++|++||+||++|||+||||||+||+++|||+
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~ 126 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 126 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHH
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCC
Confidence 999999999999999999999999999999999999994
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=3.2e-48 Score=269.14 Aligned_cols=110 Identities=57% Similarity=1.050 Sum_probs=107.6
Q ss_pred CccccccCCHHHHHHHHHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc
Q 033424 3 KNSFKLEHPLERRQAEAARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (119)
Q Consensus 3 ~~~fk~~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (119)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|++++++|||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 83 NILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 83 ~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
|.+|++|++||+||++|+|+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=2.2e-35 Score=198.72 Aligned_cols=85 Identities=24% Similarity=0.437 Sum_probs=80.1
Q ss_pred EEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC-CCCCccchHHHHHhhccCCCCeEEEEe
Q 033424 32 VIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRDEDGFLYMTY 110 (119)
Q Consensus 32 VIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (119)
|+|--.+.+++|.|+++||+||+++||++|+.+||+||+|++++|||||||| .+|++|++||+||++|| +||||||+|
T Consensus 6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY 84 (91)
T ss_dssp EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence 5555556689999999999999999999999999999999999999999999 58999999999999999 999999999
Q ss_pred cCccccc
Q 033424 111 SGENTFG 117 (119)
Q Consensus 111 s~~~~fG 117 (119)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 4gdk_A 85 CKSQAWG 91 (91)
T ss_dssp ESSCCCC
T ss_pred eCccccC
Confidence 9999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=3.8e-35 Score=199.30 Aligned_cols=85 Identities=18% Similarity=0.391 Sum_probs=80.8
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC-CCCCccchHHHHHhhccCCCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRDEDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd~DGf 105 (119)
|+||+|++++. +++|.|+|+||+||+++||++|+.+||+||+++ +||||||| ++|++|++|++||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999988 679999999999999999999999999999998 99999999 899999999999999999 999
Q ss_pred EEEEecCccccc
Q 033424 106 LYMTYSGENTFG 117 (119)
Q Consensus 106 Lyi~Ys~~~~fG 117 (119)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.9e-33 Score=188.38 Aligned_cols=85 Identities=11% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC-CCCCccchHHHHHhhccCCCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRDEDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd~DGf 105 (119)
|.||-|.... .+++|.|+++||+||+++|+++|+.+||+||++ ++||||||| ++|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrfk~--~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKFQP--IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEEEE--CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 4565555444 489999999999999999999999999999999 699999999 58999999999999999 7999
Q ss_pred EEEEecCccccc
Q 033424 106 LYMTYSGENTFG 117 (119)
Q Consensus 106 Lyi~Ys~~~~fG 117 (119)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=96.08 E-value=0.0088 Score=47.06 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCC-CCCccceeEEEecC---CCchHHHHHHHHHhhC-CCCCCeEEEEEcCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKS-DVPEIDKKKYLVPA---DLTVGQFVYVVRKRIK-LSPEKAIFIFVKNI 84 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~-~~p~L~k~Kflvp~---~~tv~~~~~~lRk~L~-l~~~~slfl~Vn~~ 84 (119)
+.|++=..=..++...-+.+|||.|--.... ..+.+. -.++. ..|++++..- +..+. +-+..+..+.+.+.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 3444433444556655578999999876432 222221 11111 2277765510 22222 22344468888998
Q ss_pred CCCccchHHHHHhhccCCCCeEEEEec
Q 033424 85 LPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 85 lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.|+.++.|..||+++.-.||||||.-.
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~ 285 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLV 285 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence 888999999999999999999999876
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.85 E-value=0.029 Score=43.62 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCccEEEEccCCCCCCccceeEEEe---cCCCchHHHHHHHHHhh-CCC-CCCeEEEEEcCCCCCccchHHHHHhhccCC
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLV---PADLTVGQFVYVVRKRI-KLS-PEKAIFIFVKNILPPTAAMMSAIYEENRDE 102 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflv---p~~~tv~~~~~~lRk~L-~l~-~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~ 102 (119)
.+|||.|-... ++-|.++..-=-+ ....|++++...+=-.+ .-+ ......+++.+..++.++.|.+||++....
T Consensus 183 r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l~y~ 261 (275)
T 4gdk_B 183 RYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHLSYP 261 (275)
T ss_dssp SSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHHHCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHSCCT
T ss_pred ccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHHhcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhccCC
Confidence 67999997532 1222222110000 12357777655431111 101 113456677888899999999999999999
Q ss_pred CCeEEEEec
Q 033424 103 DGFLYMTYS 111 (119)
Q Consensus 103 DGfLyi~Ys 111 (119)
||||||+-.
T Consensus 262 DgFLhI~v~ 270 (275)
T 4gdk_B 262 DNFLHISII 270 (275)
T ss_dssp TSCEEEEEE
T ss_pred CceEEEEEE
Confidence 999999764
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=95.76 E-value=0.0088 Score=46.54 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCCCccEEEEccCCCCCCccceeEEEec---CCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCC
Q 033424 26 YPDRIPVIVERAEKSDVPEIDKKKYLVP---ADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDE 102 (119)
Q Consensus 26 ~P~kipVIvE~~~~~~~p~L~k~Kflvp---~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~ 102 (119)
-...|||.|-.... |.++. +|+ ...|++++.. ..+.. ......+++.+..++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~~---~~iQ~---~i~~~~~~~TLg~~L~---~~lp~-l~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSNY---AVLQP---TVPVTDKELSVAELLD---SIKLS-SDGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTTS---CEECC---CCBCC---CBHHHHHH---TTTCC-C--CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCCC---CeEec---ccCCCCccccHHHHHH---Hhccc-cccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 46889999986432 22221 233 3667777655 33321 012334677888889999999999999999
Q ss_pred CCeEEEE
Q 033424 103 DGFLYMT 109 (119)
Q Consensus 103 DGfLyi~ 109 (119)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=94.72 E-value=0.043 Score=35.53 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=39.1
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHH
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMS 93 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~ 93 (119)
.-+|.|+.+.+|.+++..-|++-+++++.++.|...+.-..+++++.
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~ 67 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQ 67 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChh
Confidence 44899999999999999999999999999999988885444444443
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=88.10 E-value=2.4 Score=26.21 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+++|-|.|.-..++ ....|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 5 ~~~i~ikV~~~~g~-----~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 5 SQELRLRVQGKEKH-----QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp CCCEEEEEECSSTT-----CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred CCEEEEEEEeCCCC-----EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 35566666443211 13468899999999999999999999988655666 55555667788877
No 15
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=85.68 E-value=3.9 Score=27.21 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=45.8
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+++|-|.|.-..+. ...|.|..+.+++.++....++.++++.+--|+| ++.....+.|..++
T Consensus 24 ~~~I~IkVk~~~g~------~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADGA------EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTSC------CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCCCC------EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 35566666543222 2478999999999999999999999988665666 55555667888887
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.67 E-value=2.4 Score=27.22 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=43.7
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc----CCCCCccchHHHHHhhccCCCCeEEEE
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK----NILPPTAAMMSAIYEENRDEDGFLYMT 109 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn----~~lp~~~~~m~~lY~~~kd~DGfLyi~ 109 (119)
.-||.+.+++++...|++||++.+++...-|=. ...+..++.|.+.+++=+ +|-|-+.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~ 79 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW 79 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence 458999999999999999999986655455543 124678889999998865 4555443
No 17
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.85 E-value=4.4 Score=24.61 Aligned_cols=75 Identities=8% Similarity=0.061 Sum_probs=50.1
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (119)
|..+-|.|....+ +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~g------~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q-rL~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDG------GSYAYAINPNSFILGLKQQIEDQQGLPKKQQ-QLEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTT------EEEEEEECSSSBHHHHHHHHHHHTCCCTTTE-EEEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCCC------CEEEEEeCCCChHHHHHHHHHHHhCCChHHE-EEEECCEEccCCCCHHHC----CCCCCCE
Confidence 4556666655321 1224568999999999999999999987654 344566655677788765 22 3446
Q ss_pred EEEEecC
Q 033424 106 LYMTYSG 112 (119)
Q Consensus 106 Lyi~Ys~ 112 (119)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7776543
No 18
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=83.69 E-value=2.8 Score=25.12 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=42.4
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
..+-|..+.|++++...+..+.++++++--++ .++.....+.|++++- - .++..|++...
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G~~L~d~~tl~~~~--i-~~~~~i~l~~~ 75 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKELG--M-EEEDVIEVYQE 75 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTCCHHHHT--C-CTTEEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECCEEeCCCCCHHHcC--C-CCCCEEEEEEe
Confidence 35679999999999999999999988755444 4665556777888751 1 13446666543
No 19
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=80.91 E-value=2.1 Score=27.44 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=42.1
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
++|-|.|.-.. + +...|.|.++.+++.++....++.++++++--|+| ++.....+.|.+++
T Consensus 4 ~~i~ikVk~~~-g-----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 4 DHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred CeEEEEEECCC-C-----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 45555554322 1 23478999999999999999999999987665666 44433445566554
No 20
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=80.35 E-value=4.9 Score=25.42 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=50.5
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeE
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFL 106 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (119)
+..+-|.|.-..+ +...+-|..+.||+++...|..+.++++++--++| ++.....+.|++++- - .++..|
T Consensus 19 ~~~m~I~Vk~~~g------~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i-~~g~~I 88 (97)
T 1wyw_B 19 GEYIKLKVIGQDS------SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--M-EEEDVI 88 (97)
T ss_dssp CCEEEEEEECTTC------CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--C-CTTCEE
T ss_pred CCcEEEEEEeCCC------CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--C-CCCCEE
Confidence 4566677654321 12357799999999999999999999887654444 565556778888752 1 134467
Q ss_pred EEEec
Q 033424 107 YMTYS 111 (119)
Q Consensus 107 yi~Ys 111 (119)
++...
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77654
No 21
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=79.26 E-value=4.5 Score=24.74 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=41.0
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++....
T Consensus 26 v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~gk~L~d~~tL~~~--~i-~~g~~i~l~~~~ 82 (89)
T 1wy8_A 26 VSRKATIEELRERVWALFDVRPECQ-RLFYRGKQLENGYTLFDY--DV-GLNDIIQLLVRP 82 (89)
T ss_dssp ECTTCBHHHHHHHHHHHSCCCTTTE-EEEETTEECCSSSBHHHH--TC-CTTCEEEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHCcChhhE-EEEECCeECCCCCCHHHC--CC-CCCCEEEEEEeC
Confidence 8999999999999999999987654 344466655677788765 11 135577776543
No 22
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.08 E-value=6.4 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=43.1
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|..+.||+++...|..+-++++++- -|..++.....+.+|++ |.-. ++..|.|.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQ-rLi~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKI-VLKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 4568999999999999999999987654 33445665577888887 3321 3447888883
No 23
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=77.10 E-value=7.5 Score=25.10 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHhhCCCCccEEEEccC--CCCCCccceeEEEecC-CCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhh
Q 033424 22 IRDKYPDRIPVIVERAE--KSDVPEIDKKKYLVPA-DLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEE 98 (119)
Q Consensus 22 ir~k~P~kipVIvE~~~--~~~~p~L~k~Kflvp~-~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~ 98 (119)
...++|.-|.|.|.... .+. ...+-|+. +.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 20 ~l~~~~~~i~i~Vk~~~~~~g~-----~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y--- 90 (111)
T 1we6_A 20 FLAQHPGPATIRVSKPNENDGQ-----FMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY--- 90 (111)
T ss_dssp HHHHCCSCEEEEECCTTCSSSC-----CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT---
T ss_pred HHHhCCCcEEEEEEecccCCCc-----EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC---
Confidence 44578888888886531 121 23466897 99999999999999999866432 33466655666676543
Q ss_pred ccC-CCCeEEEEec
Q 033424 99 NRD-EDGFLYMTYS 111 (119)
Q Consensus 99 ~kd-~DGfLyi~Ys 111 (119)
.- ++..|+|...
T Consensus 91 -~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 -NVGAGEILTLSLR 103 (111)
T ss_dssp -TCSSSCEEEEECS
T ss_pred -CCCCCCEEEEEEE
Confidence 22 3446777654
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=76.76 E-value=3.8 Score=25.18 Aligned_cols=75 Identities=13% Similarity=0.280 Sum_probs=48.8
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeE
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFL 106 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (119)
|..+-|.|.-..+ . ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~g-~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLDS-Q-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETTC-C-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCCC-C-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCeECCCCCCHHHc----CCCCcEE
Confidence 4555566644321 1 2245689999999999999999999876543 34466666667788763 2224567
Q ss_pred EEEecC
Q 033424 107 YMTYSG 112 (119)
Q Consensus 107 yi~Ys~ 112 (119)
++....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 766543
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.57 E-value=5.7 Score=23.55 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=39.9
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSA 94 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (119)
..+-|.|.... ++ ...+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++
T Consensus 6 ~~m~i~vk~~~-g~-----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQ-GR-----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETT-SC-----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred CcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 44566665332 21 2245689999999999999999999876433 3446654455667765
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=76.44 E-value=3.1 Score=25.00 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=41.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- .++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 4678999999999999999999987643 344577655667777663 11 24557777654
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=75.85 E-value=9.3 Score=23.49 Aligned_cols=60 Identities=10% Similarity=-0.037 Sum_probs=42.8
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWL-TFEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEE-ESSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEE-EECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 456899999999999999999998775433 34666556778887752 22 34578877654
No 28
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=75.54 E-value=14 Score=23.98 Aligned_cols=86 Identities=7% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHhhCCCCccEEEEccCCCCCC--ccce--eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHh
Q 033424 22 IRDKYPDRIPVIVERAEKSDVP--EIDK--KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYE 97 (119)
Q Consensus 22 ir~k~P~kipVIvE~~~~~~~p--~L~k--~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~ 97 (119)
..+.+|..|.|.|.......-| .|.. ..+-|+.+.||+++...|....++++++- -|+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rL~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQ-KLQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTE-EEEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHE-EEEECCEECCCCCCHHHC--
Confidence 5567899999988754311100 1332 23568999999999999999999987654 333466544667788764
Q ss_pred hccC-CCCeEEEEecC
Q 033424 98 ENRD-EDGFLYMTYSG 112 (119)
Q Consensus 98 ~~kd-~DGfLyi~Ys~ 112 (119)
.- ++..|+|....
T Consensus 95 --~i~~g~~i~lv~rl 108 (115)
T 1we7_A 95 --NMASGAVIHLALKE 108 (115)
T ss_dssp --TCCSSCEEEEEECC
T ss_pred --CCCCCCEEEEEEEc
Confidence 22 34467776543
No 29
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=74.23 E-value=3.8 Score=23.90 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=40.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998764 4445566544556676543 22 3446776653
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=73.81 E-value=2.9 Score=25.18 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=42.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.+|++. .- .++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TC-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CC-CCCCEEEEEEec
Confidence 4568899999999999999999987653 445576655667777663 11 245577776543
No 31
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=73.67 E-value=5 Score=24.49 Aligned_cols=62 Identities=16% Similarity=0.341 Sum_probs=42.7
Q ss_pred CCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHH
Q 033424 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSA 94 (119)
Q Consensus 26 ~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (119)
-|..+.|.|....+ . ...+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~g-~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLDS-Q-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETTS-C-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCCC-C-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCcHHH
Confidence 35666677755321 1 224568999999999999999999987654 34446666666777765
No 32
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=72.75 E-value=4.5 Score=23.54 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=40.6
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.|++++...|.++.++++++ .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998764 4455566555566676553 22 3446776653
No 33
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=71.93 E-value=17 Score=23.50 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 26 ~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
-+++|-|.|.-..+. ....|.|.++.+++.++..-.++.+++.+.--|+| ++....+++|..+|
T Consensus 22 ~~~~I~LkV~~~dg~-----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKH-----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp SCSEEEEEEEESSSS-----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred CCCeEEEEEEcCCCC-----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 345666666433211 13478999999999999999999999988655555 66555667788877
No 34
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=71.91 E-value=3.5 Score=28.26 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=40.3
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCC-CeEEEEEc--C-C----CCCccchHHHHHhhccC
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPE-KAIFIFVK--N-I----LPPTAAMMSAIYEENRD 101 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn--~-~----lp~~~~~m~~lY~~~kd 101 (119)
.-|.|.+++++++|...|-+.+|++++ ..|+..+| | + ++.++.+|+..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999764 66777775 2 2 44555677666666533
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=70.49 E-value=6.9 Score=24.98 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=49.6
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeE
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFL 106 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (119)
++.+-|.|.... + +..+-|+.+.||+++...|..+.++++++ .-|+.++.....+.+|++. .-+ ++..|
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~y--gI~-~gstI 88 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC--GVR-DGLTV 88 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBHHHH--TCC-TTCEE
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHC--CCC-CCCEE
Confidence 345666665432 1 23567899999999999999999998664 3444566655677788765 111 34467
Q ss_pred EEEecC
Q 033424 107 YMTYSG 112 (119)
Q Consensus 107 yi~Ys~ 112 (119)
++....
T Consensus 89 ~l~~r~ 94 (100)
T 1yqb_A 89 HLVIKR 94 (100)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 776654
No 36
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=68.36 E-value=8.4 Score=23.74 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=39.5
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEE
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMT 109 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~ 109 (119)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .= ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 4568999999999999999999987643 334466656667777763 22 34466654
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.35 E-value=12 Score=23.40 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeE
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFL 106 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfL 106 (119)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.= - .++..|
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y~--I-~~gstI 84 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQCG--V-EALTTL 84 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHHT--C-CSSCEE
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHCC--C-CCCCEE
Confidence 4556777765 1 2335678999999999999999999987643 3445666556777887651 1 134467
Q ss_pred EEEe
Q 033424 107 YMTY 110 (119)
Q Consensus 107 yi~Y 110 (119)
++..
T Consensus 85 ~lv~ 88 (93)
T 2l7r_A 85 EVAG 88 (93)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
No 38
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=68.07 E-value=4.9 Score=24.31 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=40.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEe
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTY 110 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i-~~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KI-LGGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TC-CTTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CC-CCCCEEEEEE
Confidence 4679999999999999999999986543 344476655667787764 11 2455676654
No 39
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=68.03 E-value=7.3 Score=23.15 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=41.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEe
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTY 110 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Y 110 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++.- - .++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~~--i-~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEYG--L-KPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGGT--C-CTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEE
Confidence 4678999999999999999999987653 4455666556677777631 1 2344677654
No 40
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=67.30 E-value=5.9 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEE
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIF 80 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~ 80 (119)
-.||.+.+++++..-|+.||.++ +.-++.|
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~y 55 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTK 55 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEe
Confidence 36999999999999999999994 3334444
No 41
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.09 E-value=14 Score=23.53 Aligned_cols=59 Identities=10% Similarity=0.176 Sum_probs=42.3
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~ 112 (119)
.+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.+|+++ .- ++..|+|....
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEcC
Confidence 467899999999999999999998664 3445567655677788765 22 33467776543
No 42
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=66.90 E-value=8.4 Score=25.05 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHhhCCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhh
Q 033424 19 AARIRDKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEE 98 (119)
Q Consensus 19 ~~~ir~k~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~ 98 (119)
+..+....|.+|-|.|.-.. + ++..+-|.++.||++|...|-.+.++++++-.-.| ++.....+.||+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 34455567788888886532 1 23457899999999999999999999987654444 566666677774 4
Q ss_pred ccCCCC-eEEEEe
Q 033424 99 NRDEDG-FLYMTY 110 (119)
Q Consensus 99 ~kd~DG-fLyi~Y 110 (119)
|.=.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 543344 555555
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=66.19 E-value=7.8 Score=22.68 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=39.6
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEe
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTY 110 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (119)
.+-|+.+.||+++...|..+.+++++.- =|+.++.....+.++++. .= ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHE-EEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 4578999999999999999999987643 344566555566676553 22 344666654
No 44
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.09 E-value=8.3 Score=23.78 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=40.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCC-CCccchHHHHHhhccCCCCeEEEEe
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNIL-PPTAAMMSAIYEENRDEDGFLYMTY 110 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~l-p~~~~~m~~lY~~~kd~DGfLyi~Y 110 (119)
..-|+.+.||+++...|..+.++++++- =|+.++.. ...+.+|++.= - .++..|++..
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~lL~D~~tL~~y~--I-~~gs~i~lv~ 82 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQ-TLIVDGIVILREDLTVEQCQ--I-VPTSDIQLEV 82 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCCSSSBHHHHT--C-CTTSCEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEEecCCcCCHHHcC--C-CCCCEEEEEE
Confidence 3568999999999999999999987643 34456654 67777887641 1 1344566643
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.64 E-value=6.9 Score=24.20 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=43.0
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|+++ .- .++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i-~~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NI-QKESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TC-CTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CC-CCCCEEEEEEEc
Confidence 456899999999999999999998765 3455577656677777763 11 235577777643
No 46
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=65.42 E-value=12 Score=23.55 Aligned_cols=75 Identities=12% Similarity=-0.002 Sum_probs=48.5
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCcc-chHHHHHhhccCCCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTA-AMMSAIYEENRDEDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~-~~m~~lY~~~kd~DGf 105 (119)
+..+.|.|....+ ....-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++.= - .++..
T Consensus 13 ~~~~~I~Vk~~~~-------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~yg--I-~~gst 81 (94)
T 2kan_A 13 VRKIHVTVKFPSK-------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEYG--I-TEFSE 81 (94)
T ss_dssp SCCEEEEEECSSC-------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHHT--C-CTTEE
T ss_pred CCCEEEEEEcCCc-------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHCC--C-CCCCE
Confidence 4556666654321 234568999999999999999999986643 344566544556 7887641 1 13446
Q ss_pred EEEEecC
Q 033424 106 LYMTYSG 112 (119)
Q Consensus 106 Lyi~Ys~ 112 (119)
|+|....
T Consensus 82 l~lv~r~ 88 (94)
T 2kan_A 82 IVVFLKS 88 (94)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 7776544
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=65.22 E-value=7.1 Score=24.46 Aligned_cols=60 Identities=8% Similarity=0.071 Sum_probs=42.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecCc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSGE 113 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (119)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.+|++. .- ++..|++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLR 74 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEeCC
Confidence 4568899999999999999999987643 444566544556677653 22 455777776543
No 48
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=64.90 E-value=6.6 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=36.1
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
...|.|..+.++..++....++.++++++--|+| ++.-...+.|.+++
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 3468899999999999999999999988666666 44333445555554
No 49
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=64.89 E-value=19 Score=21.37 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=47.9
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHh---hCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-C
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKR---IKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-E 102 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~ 102 (119)
|..+-|.|....+. ...+-|+.+.||+++...|..+ -++++++ .-|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~-qrLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAG-QKLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGG-EEEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHH-eEEEECCEECcCCCCHHH----cCCCC
Confidence 56677777654322 2245689999999999999998 4566544 334456665566677765 333 4
Q ss_pred CCeEEEEecCcc
Q 033424 103 DGFLYMTYSGEN 114 (119)
Q Consensus 103 DGfLyi~Ys~~~ 114 (119)
+..|++..+...
T Consensus 72 g~~i~l~~~~~~ 83 (85)
T 2wyq_A 72 KNFVVVMVTKTK 83 (85)
T ss_dssp TSEEEEEEC---
T ss_pred CCEEEEEEcCCC
Confidence 557888765543
No 50
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.28 E-value=14 Score=22.88 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=46.3
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCC-eE
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDG-FL 106 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DG-fL 106 (119)
..+-|.|... + +...+-|+.+.||+++...|..+.++++++--. +.++.....+.+|++. .-.|| .|
T Consensus 16 ~~m~i~Vk~~--g-----~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL-~~~Gk~L~D~~tL~~~----gi~~g~~i 83 (96)
T 1wx8_A 16 RIIRVSVKTP--Q-----DCHEFFLAENSNVRRFKKQISKYLHCNADRLVL-IFTGKILRDQDILSQR----GILDGSTV 83 (96)
T ss_dssp CEEEEEEECS--S-----SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCC-EETTEECCTTSCHHHH----TCCTTEEE
T ss_pred CcEEEEEEEC--C-----eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCEECCCcCCHHHC----CCCCCCEE
Confidence 4455666443 1 123466899999999999999999998764333 3456555677788773 23333 56
Q ss_pred EEEec
Q 033424 107 YMTYS 111 (119)
Q Consensus 107 yi~Ys 111 (119)
+|...
T Consensus 84 ~l~~~ 88 (96)
T 1wx8_A 84 HVVVR 88 (96)
T ss_dssp ECCBC
T ss_pred EEEEe
Confidence 65443
No 51
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=63.06 E-value=27 Score=22.37 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=44.1
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEE-EEcC----CCCCccchHH---HHHhhccCCCCeEEE
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFI-FVKN----ILPPTAAMMS---AIYEENRDEDGFLYM 108 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vn~----~lp~~~~~m~---~lY~~~kd~DGfLyi 108 (119)
..+.||.+.++.++..-||.++++.+.+.+-+ |++. ...+.|..|. ++|+-.+|..=.|||
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 36779999999999999999999988887766 4442 2457777665 466666644444444
No 52
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=62.72 E-value=6.3 Score=23.36 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=38.3
Q ss_pred EE-ecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEe
Q 033424 50 YL-VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTY 110 (119)
Q Consensus 50 fl-vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (119)
+- |+.+.|++++...|..+.++++++- -|+.++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~q-rL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQ-RLFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 8899999999999999999987653 334466544556666543 22 344666654
No 53
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=62.27 E-value=8.3 Score=23.77 Aligned_cols=60 Identities=7% Similarity=-0.004 Sum_probs=42.0
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++....
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~--~i-~~g~~l~l~~rl 73 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KI-LGGSVLHLVLAL 73 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTTTT--TC-CTTCEEEEECBC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHE-EEEECCeECCCCCcHHHc--CC-CCCCEEEEEEEC
Confidence 4568899999999999999999987644 334466655667787764 11 234577776543
No 54
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.02 E-value=7.2 Score=24.06 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=37.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCC-CCeEEEEe
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDE-DGFLYMTY 110 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGfLyi~Y 110 (119)
.-|+.+.||+++...|....++++++- =|+.++.....+.+|+++ .-. +..|+|..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 468899999999999999999986543 333466555566666543 223 33566654
No 55
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=60.84 E-value=15 Score=21.93 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=36.0
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
...|.|.++.+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 347889999999999999999999998776677644333 444555443
No 56
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.73 E-value=15 Score=23.95 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=36.3
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHH
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSA 94 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (119)
...-|+.+.||+++...|..+.++++.+- -|..++.....+.||++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 34558999999999999999999987654 34456766678888876
No 57
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=60.53 E-value=8.4 Score=23.73 Aligned_cols=58 Identities=7% Similarity=0.090 Sum_probs=38.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999986543 344466544556676553 22 3446666543
No 58
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=60.35 E-value=8.3 Score=24.28 Aligned_cols=73 Identities=8% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (119)
+..+-|.|....+ + ...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .= ++..
T Consensus 20 ~~~m~I~Vk~~~g-~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLTG-K-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETTC-C-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCCC-C-----EEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 3456666654321 1 234568999999999999999999987644 344566655667777653 22 3445
Q ss_pred EEEEe
Q 033424 106 LYMTY 110 (119)
Q Consensus 106 Lyi~Y 110 (119)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66654
No 59
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=60.32 E-value=23 Score=25.69 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=42.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCC--CeEEEEEc-CC---CCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPE--KAIFIFVK-NI---LPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~--~slfl~Vn-~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
...+++..|+.++...+++.++++++ -.|+.+-+ ++ +-..+.||.++. -.+|.-|.|-..
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~---l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAG---LYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHT---CCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhC---CCCCCEEEEEEe
Confidence 46789999999999999999999875 55666554 32 445567887752 334556666554
No 60
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.25 E-value=23 Score=22.48 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=42.0
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecCc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSGE 113 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (119)
.+-|+.+.||+++...|..+.++.+++--.+ .++.....+.+|++. .- ++..|+|.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 4679999999999999999999986654333 466555667777653 22 345777776543
No 61
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=60.01 E-value=14 Score=23.47 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
++|-|.|.-.. + +...|.|.++.+++.++...+++.++++++--|+|- +.....+.|.+++
T Consensus 6 ~~i~ikVk~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd-G~~l~~~~Tp~dl 66 (94)
T 2io1_B 6 DHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD-GQPINETDTPAQL 66 (94)
T ss_dssp CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET-TEECCTTCCTTTT
T ss_pred CeEEEEEECCC-C-----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC-CEEcCCCCCHHHc
Confidence 45555554322 1 234688999999999999999999999876556654 4333445555554
No 62
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.86 E-value=29 Score=22.10 Aligned_cols=54 Identities=2% Similarity=-0.034 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHhh--CCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecC
Q 033424 55 DLTVGQFVYVVRKRI--KLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSG 112 (119)
Q Consensus 55 ~~tv~~~~~~lRk~L--~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~ 112 (119)
+.||+++...|..+. ++++++..=|+.++.....+.+|++. .- ++-.|+|.-..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY----GIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH----TCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc----CCCCCCEEEEEeCC
Confidence 599999999999999 88877612334456544677788765 22 23366665543
No 63
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=58.27 E-value=21 Score=22.31 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=32.1
Q ss_pred ecCCCchHHHHHHH-HHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 52 VPADLTVGQFVYVV-RKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 52 vp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
++.+.||+++...| ..+-++++++- =|+.++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEI-KLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTE-EEEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHE-EEEECCEECcCcCCHHHc
Confidence 34899999999999 77778887654 344466666778888854
No 64
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=57.85 E-value=14 Score=23.76 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=40.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987654 344466544556677653 22 3446776653
No 65
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=57.46 E-value=9.1 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCCeEEEEEcC
Q 033424 63 YVVRKRIKLSPEKAIFIFVKN 83 (119)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~ 83 (119)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998864
No 66
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=57.14 E-value=35 Score=22.91 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC------CCCeEEEEecCcccc
Q 033424 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD------EDGFLYMTYSGENTF 116 (119)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd------~DGfLyi~Ys~~~~f 116 (119)
-|..+.||+++...|..+.++++.+- -|+.++.....+.||++ |. -++ .+--|++......+|
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQ-rLi~~Gk~LeD~~TLsd-y~-I~~~~a~~q~~stL~L~lr~~g~f 85 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQ-RLYKDDQLLDDGKTLGE-CG-FTSQTARPQAPATVGLAFRADDTF 85 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBHHH-HT-CCTTTSBTTBCEEEEEEEBSSSCB
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH-cC-cccccccCCCCCEEEEEecCCCce
Confidence 48899999999999999999987653 33357776678889987 32 212 245788888754444
No 67
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.12 E-value=13 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCC-CCCccchHHHHHhhccC
Q 033424 72 SPEKAIFIFVKNI-LPPTAAMMSAIYEENRD 101 (119)
Q Consensus 72 ~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd 101 (119)
.++..|.|||.|- -+-....|.++|..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 4678899999983 44555678888888864
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=56.85 E-value=21 Score=21.98 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=39.8
Q ss_pred EecCCCchHHHHHHHHHhhCCCCCCeEEEE--EcCCCCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 51 LVPADLTVGQFVYVVRKRIKLSPEKAIFIF--VKNILPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~~~slfl~--Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
-|+.+.||++|...|..+.++++++--.+. .++.....+.+|+++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468999999999999999999866433220 456555667788774 111 344676655443
No 69
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.70 E-value=14 Score=24.22 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCCCCeEEEEEcCC--CCCc---cchHHHHHhhcc-C----CCCeEEEEecCcc
Q 033424 71 LSPEKAIFIFVKNI--LPPT---AAMMSAIYEENR-D----EDGFLYMTYSGEN 114 (119)
Q Consensus 71 l~~~~slfl~Vn~~--lp~~---~~~m~~lY~~~k-d----~DGfLyi~Ys~~~ 114 (119)
++|.+++ |||+|- -... ...|.+|+.+|. . .-||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4567775 778872 2222 234789999995 2 4689999988754
No 70
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.08 E-value=6.3 Score=25.27 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=39.7
Q ss_pred CCCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 26 YPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 26 ~P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
-.-.|-|.|.. .+... .+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++.
T Consensus 25 ~~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQR-LIYSGKILKDDQTVESY 86 (101)
T ss_dssp ----CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCC-EEETTEECCTTSBTTTT
T ss_pred CCcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEE-EEECCEECCCcCcHHHC
Confidence 33456677764 22222 24578999999999999999999866432 33466655667777663
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=55.97 E-value=28 Score=22.79 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=40.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-rL~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999987654 344466544566676653 22 3456777654
No 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.23 E-value=22 Score=21.87 Aligned_cols=76 Identities=9% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCccEEEEccCCCCCCccceeEEE--ecCCCchHHHHHHHHHhh--CCCCCCeEEEEEcCCCCCccchHHHHHhhccCCC
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYL--VPADLTVGQFVYVVRKRI--KLSPEKAIFIFVKNILPPTAAMMSAIYEENRDED 103 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kfl--vp~~~tv~~~~~~lRk~L--~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~D 103 (119)
..+.|.|....+.. ..+- |+.+.||+++...|.... ++++++- =|+.++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~~~~------~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Q-rLi~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPNQRH------RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQ-RLIYSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSSSSC------CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTC-EEEETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCCCCe------EEEEEecCCCCcHHHHHHHHHHHhcCCCChHHe-EEEECCEECcCcCCHHHHhcCCC-CC
Confidence 45667776442211 1233 559999999999999998 8876543 23346666667778887542222 34
Q ss_pred CeEEEEec
Q 033424 104 GFLYMTYS 111 (119)
Q Consensus 104 GfLyi~Ys 111 (119)
..|+|...
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 46666543
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=54.97 E-value=21 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=35.6
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHH
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSA 94 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~ 94 (119)
-.+-|..+.|++++...|-.+.++++..-= ++.++.+...+.||++
T Consensus 39 i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 39 IWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 346788999999999999999999986544 4445677667778764
No 74
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=53.79 E-value=12 Score=23.81 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCe
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGF 105 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGf 105 (119)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .- ++..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQL-VLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGE-EEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHc----CCCCCCE
Confidence 57788888654 21 235678999999999999999999987643 344466544566677653 33 3446
Q ss_pred EEEEecC
Q 033424 106 LYMTYSG 112 (119)
Q Consensus 106 Lyi~Ys~ 112 (119)
|+|....
T Consensus 91 I~l~~~~ 97 (101)
T 2klc_A 91 VHLVIKT 97 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7766543
No 75
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=53.52 E-value=25 Score=24.00 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred CCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc
Q 033424 42 VPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (119)
Q Consensus 42 ~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (119)
+|+..-....|..+.+|++++..|.+++++...+- |-+|.
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 56666678899999999999999999999986655 55553
No 76
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=53.23 E-value=14 Score=23.88 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=40.7
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|+++= - .++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~g--I-~~gs~I~l~~r 107 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYN--I-QKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTTT--C-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHCC--C-CCCCEEEEEEe
Confidence 4668999999999999999999987643 4445666556666776631 1 13446666543
No 77
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=52.17 E-value=13 Score=21.13 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=18.2
Q ss_pred HHHHHhhCCCCCCeEEEEEcC
Q 033424 63 YVVRKRIKLSPEKAIFIFVKN 83 (119)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~ 83 (119)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 458999999999999998864
No 78
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=51.68 E-value=27 Score=21.99 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+++|-|.|.-.. + ....|.|..+.+++.++....++.++++++--|+| ++.....+.|..++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE-CCEEcCCCCCHHHc
Confidence 456666665322 1 13468999999999999999999999987555555 44333444555543
No 79
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=51.34 E-value=15 Score=24.74 Aligned_cols=60 Identities=3% Similarity=0.074 Sum_probs=41.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEE-EEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFI-FVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl-~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|....++++++--.+ |-++.....+.+|++. .- .++..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i-~~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GL-GPGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CC-CCCCEEEEEcc
Confidence 3568899999999999999999988654444 4255555777777753 11 13556776655
No 80
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=56.38 E-value=3.2 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=31.6
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+-|+.+.||+++...|..+.++++++--. +.++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL-~~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRV-IFAGKELPNHLTVQNC 59 (76)
Confidence 45788999999999999998888664333 3455544556666653
No 81
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.90 E-value=30 Score=22.42 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=41.9
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
++|-|.|.-..+ ....|.|..+.++..++....++.++++++--|+|=+..+ ..+.|..++
T Consensus 23 ~~I~IkVk~~~g------~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 23 DHINLKVAGQDG------SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp CCEEEEEECSSS------CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred CeEEEEEECCCC------CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 455555543221 2346899999999999999999999998866566644443 455555544
No 82
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.30 E-value=20 Score=22.36 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=26.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC-CeEEEEE
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPE-KAIFIFV 81 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~-~slfl~V 81 (119)
.-+|.++||+++...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 3589999999999999999999764 5666653
No 83
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.09 E-value=18 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=40.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCC-CeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDED-GFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~D-GfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.++.+++- -|+.++.....+.+|++ |.-.| ..|+|...
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~ 103 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIK 103 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEec
Confidence 4568999999999999999999987643 34446654456667655 33334 46776654
No 84
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=49.92 E-value=42 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=25.9
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCC
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEK 75 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~ 75 (119)
...+.||.+.|+.+|-.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 57889999999999999999999987543
No 85
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.89 E-value=8.5 Score=24.77 Aligned_cols=60 Identities=7% Similarity=-0.029 Sum_probs=41.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|+++ .- .++..|++..+.
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--~i-~~g~~i~lv~~~ 74 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVLQDSKTVSEC--GL-KDGDQVVFMVSQ 74 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEECCTTSBTTTT--TC-CTTCEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEECCCcCCHHHc--CC-CCCCEEEEEEcC
Confidence 3458899999999999999999876644 344466655667777764 12 234577777654
No 86
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=49.28 E-value=11 Score=23.12 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=19.3
Q ss_pred HHHHHhhCCCCCCeEEEEEcC-C---CCCcc---chHHHHHhhcc
Q 033424 63 YVVRKRIKLSPEKAIFIFVKN-I---LPPTA---AMMSAIYEENR 100 (119)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn~-~---lp~~~---~~m~~lY~~~k 100 (119)
.-+|++|++.+++.+.+.+.+ . .|... .++.+++..+.
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~ 63 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDIT 63 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC----------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhcc
Confidence 347899999999999998864 3 34433 47888988885
No 87
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.28 E-value=14 Score=23.44 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=37.5
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCcc-chHHHHHhhccCCCCeEEEEe
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTA-AMMSAIYEENRDEDGFLYMTY 110 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~-~~m~~lY~~~kd~DGfLyi~Y 110 (119)
.-|+.+.||++|...|..+.++++++- =|+.++.....+ .+|++. .-+ ++..|+|.-
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~ 83 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEA-QIVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQ 83 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGB-CEEETTEEECCSSSBHHHH--TCC-TTEEEEECB
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHe-EEEECCEECCCCcccHHHC--CCC-CCCEEEEEE
Confidence 458999999999999999999986543 233455544444 577664 111 334666654
No 88
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=46.23 E-value=14 Score=24.07 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=41.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecCc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSGE 113 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..|+|.....
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 23 TLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 3458899999999999999999987643 344566544566676553 22 345777776543
No 89
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.12 E-value=30 Score=21.14 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCC-----CchHHHHHHHHHhhCCCCCCeEEEEEcCC-CCCccchHHHHHhhccC
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPAD-----LTVGQFVYVVRKRIKLSPEKAIFIFVKNI-LPPTAAMMSAIYEENRD 101 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~-----~tv~~~~~~lRk~L~l~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd 101 (119)
..|-|.|... +. ...+-|+.+ .||++|...|..+.++++++-- |+.++. +...+.+|+++ .=
T Consensus 6 ~~~~v~Vk~~--~~-----~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~----~i 73 (92)
T 1wxv_A 6 SGLTVTVTHS--NE-----KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL----GI 73 (92)
T ss_dssp SSEEEEEECS--SS-----EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH----TC
T ss_pred CeEEEEEEEC--CE-----EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC----CC
Confidence 4566666542 11 223457774 9999999999999998865432 334554 43335578774 22
Q ss_pred CC-CeEEEEecCc
Q 033424 102 ED-GFLYMTYSGE 113 (119)
Q Consensus 102 ~D-GfLyi~Ys~~ 113 (119)
.| ..|+|.-+..
T Consensus 74 ~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 74 QDGCRVMLIGKKN 86 (92)
T ss_dssp CSSEEEEEESCCS
T ss_pred CCCCEEEEEecCC
Confidence 23 3566654443
No 90
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.61 E-value=31 Score=22.26 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc-CCCCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn-~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.-|+.+.|+++|...|..+-++++.+--.++.. +. ...+.+|+++ .-+ ....|+|....
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~ 82 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPD 82 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSS
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecC
Confidence 458899999999999999999987654333322 34 4566678776 121 23466665443
No 91
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.32 E-value=41 Score=22.52 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=41.0
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .=.++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~G~~L~d~~tL~~y---~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY---GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG---TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHE-EEEECCeecCCCCCHHHc---CCCCCCEEEEEEe
Confidence 4568999999999999999999987654 344566555566677653 1124557777654
No 92
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=44.06 E-value=15 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEecCCCchHHHHHHHHHhhCCC
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLS 72 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~ 72 (119)
..||.+.++.+|..-|+.++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46999999999999999999864
No 93
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.02 E-value=55 Score=20.20 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCC-CeEEEE
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPE-KAIFIF 80 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~-~slfl~ 80 (119)
..|.|.|...... .....-|+.+.||+++...|..+.+++++ +.|++.
T Consensus 6 ~~v~l~I~~~~~~-----~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 6 SGVMVFISSSLNS-----FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CCEEEEEEETTSS-----SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred cEEEEEEEECCCC-----eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 4577777653221 22445799999999999999999999865 455543
No 94
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.25 E-value=27 Score=21.13 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEcCCCCCccchHHHHHhhccC--------CCCeEEEEecCcc
Q 033424 79 IFVKNILPPTAAMMSAIYEENRD--------EDGFLYMTYSGEN 114 (119)
Q Consensus 79 l~Vn~~lp~~~~~m~~lY~~~kd--------~DGfLyi~Ys~~~ 114 (119)
|||.| +--....|.+++..|.. ..||-+|.|.+.+
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~ 60 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 60 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHH
Confidence 44555 33444556666666642 3577777776543
No 95
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=43.13 E-value=25 Score=23.08 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=39.2
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.|++++...|..+.++++++-- |+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 72 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 72 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeE-EEECCeECcCcccHHHh----ccCCCCeeEEEee
Confidence 45688999999999999999999876543 33455544556666543 22 3446666554
No 96
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.19 E-value=17 Score=22.78 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=31.6
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
.+-|+.+.||++|...|..+.++++++--.+ .++... .|.+|++.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 3568999999999999999999886533222 355433 45577654
No 97
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.79 E-value=13 Score=24.46 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=22.5
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCC
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLS 72 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~ 72 (119)
...+||.+.++.+|+.-|++++++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4567999999999999999999876
No 98
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=40.65 E-value=22 Score=22.81 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhh-CCC--CCCeEEEEEcCCCCCccchHHHHHh
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRI-KLS--PEKAIFIFVKNILPPTAAMMSAIYE 97 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L-~l~--~~~slfl~Vn~~lp~~~~~m~~lY~ 97 (119)
+..|.|.|.-.. +... .-.+-|+.+.||+++...|..++ +.. ..+.| +.++.....+.+|++...
T Consensus 21 ~~~m~I~VK~~~-g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKAPN-QKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEECTT-SSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEcCC-CCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 355667775422 2110 11345799999999999999876 333 34443 346665567788887643
No 99
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=40.44 E-value=25 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=22.7
Q ss_pred EEEcCCCCCccchHHHHHhhccCC--------CCeEEEEecCcc
Q 033424 79 IFVKNILPPTAAMMSAIYEENRDE--------DGFLYMTYSGEN 114 (119)
Q Consensus 79 l~Vn~~lp~~~~~m~~lY~~~kd~--------DGfLyi~Ys~~~ 114 (119)
|||.| +.-....|.+++..|... -||-+|.|.+.+
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 45666 455566777777777542 578888886643
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.56 E-value=47 Score=20.45 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=40.0
Q ss_pred EEEecCCCchHHHHHHHHHh---hCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecCc
Q 033424 49 KYLVPADLTVGQFVYVVRKR---IKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSGE 113 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~---L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (119)
.+-|+.+.||+++...|..+ -++++++- =|+.++.....+.+|++ |.- ++..|++.....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKILNDDTALKE----YKIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEECCTTSBGGG----GTCCSSSEEEEEESSC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEECCCcCcHHH----CCCCCCCEEEEEEeCC
Confidence 45688999999999999998 45765543 34446655566667765 333 345777766543
No 101
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=37.83 E-value=6.8 Score=26.07 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHE-EEEECCEECCCCCchhhh
Confidence 457888999999999998888876643 333455545556666653
No 102
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=36.44 E-value=84 Score=20.14 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=44.9
Q ss_pred ccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC-CCCCccchHHHHHhhccC
Q 033424 44 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRD 101 (119)
Q Consensus 44 ~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd 101 (119)
.|--+..-||++..+..++.+--...+.++..+ -+.-|+ .=..++++-|++|=+|..
T Consensus 22 klpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 22 RLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 333556779999999999999999999988766 444454 566888999999999964
No 103
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=36.32 E-value=58 Score=22.88 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCC-CCCccchHHHHHhhccCC----------CCeEEEEecCc
Q 033424 72 SPEKAIFIFVKNI-LPPTAAMMSAIYEENRDE----------DGFLYMTYSGE 113 (119)
Q Consensus 72 ~~~~slfl~Vn~~-lp~~~~~m~~lY~~~kd~----------DGfLyi~Ys~~ 113 (119)
.++..+.|||.|- -+-....|.++|..|.+. .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4667889999984 445566889999998641 34666666543
No 104
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=36.19 E-value=60 Score=24.61 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=39.6
Q ss_pred ceeEE-EecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCC-CCeEEEEecCc
Q 033424 46 DKKKY-LVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDE-DGFLYMTYSGE 113 (119)
Q Consensus 46 ~k~Kf-lvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGfLyi~Ys~~ 113 (119)
+..-| .=..+++..+|...++...+-.|+.| .|++. .+.++|++..++ |..|+++.|+.
T Consensus 35 ~~~~y~~D~~di~~~efy~~~~~~~~~~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 35 DGETYYRDGVDITRDECYQRMVDDPKLFPKTS--------LPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSCEEEBTTTBCHHHHHHHHHHCTTCCCEEE--------CCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCCCceec--------CCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 44556 55568899999999976421223332 45543 678888887653 78999999874
No 105
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=36.09 E-value=80 Score=19.81 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCC-eEEEEEcCC----CCCccchHHH
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEK-AIFIFVKNI----LPPTAAMMSA 94 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~-slfl~Vn~~----lp~~~~~m~~ 94 (119)
++.|.|.|....... .....-|+.+.||+++...|..+.++++++ .|++.-++. +-..+.+|++
T Consensus 13 ~~~v~l~It~s~~~~----~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDA----VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESSCSC----EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECCCCc----eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775432111 133456999999999999999999998764 454432222 3355667765
No 106
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=35.95 E-value=34 Score=23.10 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=23.4
Q ss_pred hCCCCCCeEEEEEcC-CCCCccchHHHHHhhccC
Q 033424 69 IKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRD 101 (119)
Q Consensus 69 L~l~~~~slfl~Vn~-~lp~~~~~m~~lY~~~kd 101 (119)
+.-.++..|.|||.| .-+-....|.+||..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 344578899999998 455666788899988864
No 107
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=35.95 E-value=40 Score=20.34 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEEEcCCCC-CccchHHHHHhhccC---------CCCeEEEEecCcc
Q 033424 78 FIFVKNILP-PTAAMMSAIYEENRD---------EDGFLYMTYSGEN 114 (119)
Q Consensus 78 fl~Vn~~lp-~~~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (119)
=|||+|--+ -.+..|.+++.+|.. .-||-+|.|.+.+
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 355666333 344578888888863 2589999998754
No 108
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=35.75 E-value=83 Score=19.88 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCC-eEEEEEcC-CC----CCccchHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEK-AIFIFVKN-IL----PPTAAMMSA 94 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~-slfl~Vn~-~l----p~~~~~m~~ 94 (119)
+-|+|.|....... .....-|+.+.||+++...|..+.++++++ .|+++-.+ .. ...+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56778876532111 123457999999999999999999998765 44443321 22 344556765
No 109
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=35.59 E-value=55 Score=24.58 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=32.0
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
..-|.=..+++..+|...+++.=.+ |+.| .|++. .+.++|+ +-|..|+++.|+.
T Consensus 33 ~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~---~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 33 NEEFCDDGQLDIHRMLDILEKHKGR-SYTA--------CPGID-AWLEAFG---DDDEIFVVTITAG 86 (278)
T ss_dssp SCEEECSTTCCHHHHHHHHHTCCSC-CEEE--------CCCHH-HHHHHHT---TCSEEEEEESCTT
T ss_pred CEEEecCCCCCHHHHHHHHHhCCCC-ceec--------CCCHH-HHHHHHh---cCCcEEEEECCCc
Confidence 3445555678888998888753111 2222 34433 2444554 4578999998874
No 110
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=34.56 E-value=34 Score=21.22 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=31.2
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC-CeEEEEEcC-----CCCCccchHH
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPE-KAIFIFVKN-----ILPPTAAMMS 93 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn~-----~lp~~~~~m~ 93 (119)
--++.+.|++++...|..+-+++++ +.|.++-.+ .+...+.+|+
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~ 68 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLG 68 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHH
Confidence 3589999999999999999999875 455443221 2455555654
No 111
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=34.39 E-value=33 Score=20.78 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=27.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAA 90 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~ 90 (119)
..-+|+..|+++++ +.|++++++. -+.+|+...+.|.
T Consensus 14 ~~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 14 EVAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EEECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred eEEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 35688999999855 5789999887 4888986555554
No 112
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=33.87 E-value=82 Score=20.92 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=42.3
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+++|-|.|.-..+. ...|.|..+.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 38 ~~~I~LKV~~qdg~------ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQDSS------EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTTSC------EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEcCCCC------EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 46777777443211 247899999999999999999999998876677643333 334454443
No 113
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=33.40 E-value=44 Score=22.79 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=40.8
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Q-rL~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCccccccCCHhHc----CCcccceeeeeec
Confidence 4568999999999999999999987654 334466655667777763 22 3446666654
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.32 E-value=58 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=19.3
Q ss_pred EEEcCCCC-CccchHHHHHhhccC-------CCCeEEEEecCcc
Q 033424 79 IFVKNILP-PTAAMMSAIYEENRD-------EDGFLYMTYSGEN 114 (119)
Q Consensus 79 l~Vn~~lp-~~~~~m~~lY~~~kd-------~DGfLyi~Ys~~~ 114 (119)
|||.|--+ ...+.|.+++..|.+ .|||=+|.|.+.+
T Consensus 18 l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~ 61 (108)
T 1x4c_A 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 61 (108)
T ss_dssp EEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHH
Confidence 44555222 233456666666643 1377777776643
No 115
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.01 E-value=41 Score=27.79 Aligned_cols=60 Identities=12% Similarity=0.256 Sum_probs=43.1
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc---CC--CCC-ccchHHHHHhhccCCCC-eEEEEe
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK---NI--LPP-TAAMMSAIYEENRDEDG-FLYMTY 110 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn---~~--lp~-~~~~m~~lY~~~kd~DG-fLyi~Y 110 (119)
...|+.+.+++++...||++++++++..|=||=. +. ... ++.|+.+.+++-. || .|+++=
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~--~GdII~fQ~ 216 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM--DGDIIVFQK 216 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC--TTEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhccc--CCCEEEEEe
Confidence 4679999999999999999999999988877742 11 123 5667777765553 44 555543
No 116
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=32.65 E-value=63 Score=24.37 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred ceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEecCc
Q 033424 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYSGE 113 (119)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys~~ 113 (119)
+..-|.=..+++..+|...+++. + -|+.| .|++. .+.++|++..+ .|..|+++.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~-~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-H-TVKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-C-CCEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-C-CCeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 34455555678999999988754 2 23333 45554 47778887743 378999998874
No 117
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=32.43 E-value=44 Score=19.68 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=24.5
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAA 90 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~ 90 (119)
.+-++...|++++... |++++. .+.+.||+...+.+.
T Consensus 17 ~~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred eEECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 3567888899997664 456654 456889986444443
No 118
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=32.10 E-value=9.6 Score=26.56 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEEccccCcHHHc
Confidence 457889999999999999999887653 333456555667777764
No 119
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=31.32 E-value=63 Score=22.40 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=41.3
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y--~I-~~gstI~Lvlr 72 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKESTLHLVLR 72 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTE-EEEETTEECCTTSBGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHE-EEEECCccccCcCcHHHc--CC-CCCCEEEEEEE
Confidence 3568899999999999999999987754 344466555667777763 11 23446776654
No 120
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.70 E-value=55 Score=22.08 Aligned_cols=58 Identities=3% Similarity=-0.084 Sum_probs=40.5
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~Ys 111 (119)
-.-++.+.|+++|...|-..++++++.-- |.-++.....++||.+ |+= +++-++|.-.
T Consensus 30 tv~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~----~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 30 VIPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQ----HGVKPQEIVQVEIF 88 (118)
T ss_dssp EEEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHH----HSCCSSCEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHH----cCCCCCCEEEEEEe
Confidence 34588999999999999999998877644 4445655577888875 444 3444555433
No 121
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=30.44 E-value=25 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=22.7
Q ss_pred EecCCCchHHHHHHHHHhhCCCC-CCeEEE
Q 033424 51 LVPADLTVGQFVYVVRKRIKLSP-EKAIFI 79 (119)
Q Consensus 51 lvp~~~tv~~~~~~lRk~L~l~~-~~slfl 79 (119)
-|+.+.|++++...|...++++. .+++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 36788999999999999999863 345543
No 122
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=30.01 E-value=45 Score=20.19 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=35.2
Q ss_pred ecCCCchHHHHHHHHHhhCCCCC-CeEEEEEc-CC-CC-C-ccchHHHHHhhccCCCCeEEEEecC
Q 033424 52 VPADLTVGQFVYVVRKRIKLSPE-KAIFIFVK-NI-LP-P-TAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn-~~-lp-~-~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
++.+.||+++...|..+.++.+. +.| +|-. .. +. + .+.+++++= -+ ...-|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL-~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRI-LVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCC-EESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEE-EeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 67899999999999999998754 343 3321 12 32 2 455666531 11 24467776654
No 123
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=29.33 E-value=84 Score=20.19 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.8
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcC
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~ 83 (119)
-++.|..+.|+..|...|.++-++++.+-..||-+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 368899999999999999999999998888888773
No 124
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.08 E-value=42 Score=19.94 Aligned_cols=10 Identities=0% Similarity=0.408 Sum_probs=4.9
Q ss_pred hHHHHHhhcc
Q 033424 91 MMSAIYEENR 100 (119)
Q Consensus 91 ~m~~lY~~~k 100 (119)
.|.+++..|.
T Consensus 24 ~l~~~F~~~G 33 (93)
T 2cqh_A 24 DLRQLFGDRK 33 (93)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 4455555554
No 125
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=28.72 E-value=46 Score=20.97 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=22.7
Q ss_pred EEEcCCCC-CccchHHHHHhhccC-------CCCeEEEEecCcc
Q 033424 79 IFVKNILP-PTAAMMSAIYEENRD-------EDGFLYMTYSGEN 114 (119)
Q Consensus 79 l~Vn~~lp-~~~~~m~~lY~~~kd-------~DGfLyi~Ys~~~ 114 (119)
|||.|--+ ...+.|.+++..|.. .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 45555322 345577888888753 2488888887754
No 126
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.69 E-value=51 Score=20.02 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCCCccEEEEccCCCCC---CccceeEEEecCCCchHHHHHHHHHhhCCC
Q 033424 17 AEAARIRDKYPDRIPVIVERAEKSDV---PEIDKKKYLVPADLTVGQFVYVVRKRIKLS 72 (119)
Q Consensus 17 ~e~~~ir~k~P~kipVIvE~~~~~~~---p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~ 72 (119)
.-.+.+++.+| .+|||+=......- ..++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 68888755432210 011111 25667788888888888776543
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=28.25 E-value=88 Score=19.85 Aligned_cols=38 Identities=11% Similarity=0.343 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCC-ccchHHHHHhhccC--------CCCeEEEEecCc
Q 033424 76 AIFIFVKNILPP-TAAMMSAIYEENRD--------EDGFLYMTYSGE 113 (119)
Q Consensus 76 slfl~Vn~~lp~-~~~~m~~lY~~~kd--------~DGfLyi~Ys~~ 113 (119)
+-.|||.|-.+. ..++|.+|+.+|.. .-||=.|.|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCH
Confidence 457889886664 55689999999854 367777777765
No 128
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.22 E-value=28 Score=20.63 Aligned_cols=26 Identities=12% Similarity=0.406 Sum_probs=15.0
Q ss_pred cchHHHHHhhccC---------CCCeEEEEecCcc
Q 033424 89 AAMMSAIYEENRD---------EDGFLYMTYSGEN 114 (119)
Q Consensus 89 ~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (119)
...|.+++..|.. .-||-||.|.+.+
T Consensus 19 e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 19 EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 3456666666632 2477777776643
No 129
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=28.16 E-value=22 Score=29.46 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=37.7
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCC--CCeEEEE--EcCC---CCCccchHHHHHh
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSP--EKAIFIF--VKNI---LPPTAAMMSAIYE 97 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~--~~slfl~--Vn~~---lp~~~~~m~~lY~ 97 (119)
.-.++||++-||++++.-++++.++++ ...|-|+ .|+. +.+.+.++..|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 556789999999999999999999864 3334332 3442 5677778877766
No 130
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=27.46 E-value=36 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=42.0
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
++|-|-|. . .+ ....|.|..+.++..++....++.+++...--|+| ++.-...+.|..+|
T Consensus 56 e~InLKVk-~-dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 56 THINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CEEEEEEE-C-SS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CcEEEEEe-c-CC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 56666663 2 12 24579999999999999999999999987766777 44333334444443
No 131
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=27.13 E-value=53 Score=21.85 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=45.4
Q ss_pred CccE--EEEccCCCCCCccce-----eEEEecCCCchHHHHHHHHHhhCCCCC----CeEEEEEcC-C-------CCCcc
Q 033424 29 RIPV--IVERAEKSDVPEIDK-----KKYLVPADLTVGQFVYVVRKRIKLSPE----KAIFIFVKN-I-------LPPTA 89 (119)
Q Consensus 29 kipV--IvE~~~~~~~p~L~k-----~Kflvp~~~tv~~~~~~lRk~L~l~~~----~slfl~Vn~-~-------lp~~~ 89 (119)
.+|| |||..... +..+. .--+||++..+.|++...=.+|+-+.+ ..=-+-|+| + .+.++
T Consensus 7 mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p~ 84 (105)
T 3tuo_A 7 MLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAPD 84 (105)
T ss_dssp EEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCTT
T ss_pred ceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCch
Confidence 4555 67776432 12221 234899999999999999999997743 222456776 2 35788
Q ss_pred chHHHHHhh
Q 033424 90 AMMSAIYEE 98 (119)
Q Consensus 90 ~~m~~lY~~ 98 (119)
.|+|++-.+
T Consensus 85 ~TV~d~L~e 93 (105)
T 3tuo_A 85 ATVADMLQD 93 (105)
T ss_dssp CBHHHHHTT
T ss_pred hhHHHHHHH
Confidence 899988654
No 132
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=26.96 E-value=1.4e+02 Score=19.88 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=56.3
Q ss_pred ccEEEEccCCCCCC-ccceeEEE-ecCCCchHHHHHHHHHhhCCC-------C---------CCeEEEEEc----C-CCC
Q 033424 30 IPVIVERAEKSDVP-EIDKKKYL-VPADLTVGQFVYVVRKRIKLS-------P---------EKAIFIFVK----N-ILP 86 (119)
Q Consensus 30 ipVIvE~~~~~~~p-~L~k~Kfl-vp~~~tv~~~~~~lRk~L~l~-------~---------~~slfl~Vn----~-~lp 86 (119)
|-++..++|.--.. ...+.+|+ -+.+.||.++-..|.-||.|+ + ....-+||- . ...
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 45666676632111 11355664 789999999999998887655 1 123344553 2 267
Q ss_pred CccchHHHHHhhccCCCCeEEEEecC
Q 033424 87 PTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 87 ~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
+.+++|.++-++|=-.+-=|-|-||-
T Consensus 84 ~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 84 DGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred cCcccHHHHhhhhccCCCCeeEEecc
Confidence 99999999999995577888888873
No 133
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=26.82 E-value=52 Score=23.64 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=40.4
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEec
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
.+-|+.+.||++|...|..+.++++++- -|+.++.....+.+|++. .- .++..|+|...
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~Q-rLi~~Gk~L~D~~tL~dy--gI-~~gstI~Lvlr 177 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKESTLHLVLR 177 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTCBGGGG--TC-CTTCEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHE-EEEECCEECCCCCCHHHC--CC-CCCCEEEEEEE
Confidence 3568999999999999999999987543 233466655667777763 11 23446666544
No 134
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=26.22 E-value=39 Score=21.54 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=37.2
Q ss_pred ecCCCchHHHHHHH-HHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC--CCCeEEEEec
Q 033424 52 VPADLTVGQFVYVV-RKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD--EDGFLYMTYS 111 (119)
Q Consensus 52 vp~~~tv~~~~~~l-Rk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd--~DGfLyi~Ys 111 (119)
|+.+.||+++...| ..+-++++++- =|..++.....+.+|++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEI-KLLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGE-EEEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhE-EEEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 56999999999999 77767776654 34446666667777776 332 4557766543
No 135
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=25.92 E-value=49 Score=22.24 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=45.0
Q ss_pred ecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhcc-CC-------CCeEEEEecCccccc
Q 033424 52 VPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENR-DE-------DGFLYMTYSGENTFG 117 (119)
Q Consensus 52 vp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~k-d~-------DGfLyi~Ys~~~~fG 117 (119)
|..+.||+++...|..+.++++.+--.+ -++.+...+.||++ |+ .. +--|++.+...++|.
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE 86 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCcc
Confidence 7899999999999999999988654333 35666677777775 22 12 558899888776664
No 136
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.81 E-value=75 Score=18.93 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=6.8
Q ss_pred cchHHHHHhhccC
Q 033424 89 AAMMSAIYEENRD 101 (119)
Q Consensus 89 ~~~m~~lY~~~kd 101 (119)
...|.+++..|..
T Consensus 23 ~~~l~~~F~~~G~ 35 (99)
T 2div_A 23 ENFISRAFATMGE 35 (99)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 3355555555543
No 137
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.74 E-value=23 Score=23.10 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=42.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC--------------CeEEEEEcCC-CCCccchHHHHHhhccCCCCeEEEEecCcc
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPE--------------KAIFIFVKNI-LPPTAAMMSAIYEENRDEDGFLYMTYSGEN 114 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~--------------~slfl~Vn~~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 114 (119)
.-|+.+.||+++...|..+.++++. ...-|..++. |-..+.+|++ |. = .++.+|++.-....
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I-~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-I-RNRDEVSFIKKLGQ 98 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-C-CSSEEEEEEECSCS
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-C-CCCCEEEEEehhcc
Confidence 3488999999999999999877542 1334444555 4445678886 22 1 14557777766555
Q ss_pred ccc
Q 033424 115 TFG 117 (119)
Q Consensus 115 ~fG 117 (119)
..|
T Consensus 99 ~~~ 101 (105)
T 1v2y_A 99 KSG 101 (105)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 138
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=25.54 E-value=51 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHHHhhCCCCCCeEEEEEc
Q 033424 63 YVVRKRIKLSPEKAIFIFVK 82 (119)
Q Consensus 63 ~~lRk~L~l~~~~slfl~Vn 82 (119)
.-||++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999996
No 139
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=24.87 E-value=59 Score=23.75 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=39.3
Q ss_pred EEecCCCchHHHHHHHHHhhCCCCC--CeEEEEEcC-C---CCCccchHHHHHhhccCCCCeEEEEec
Q 033424 50 YLVPADLTVGQFVYVVRKRIKLSPE--KAIFIFVKN-I---LPPTAAMMSAIYEENRDEDGFLYMTYS 111 (119)
Q Consensus 50 flvp~~~tv~~~~~~lRk~L~l~~~--~slfl~Vn~-~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys 111 (119)
..+++..|+.++...+++.++++++ -.|+.+-++ . +-..+.+|.++ .-.+|..|.|-..
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~---~L~~~Q~illE~r 220 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA---GLYQGQVLVIEPQ 220 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT---TCCTTEEEEEEEC
T ss_pred EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh---CCCCCCEEEEEEe
Confidence 5679999999999999999999875 445554433 2 44556677653 2223445555544
No 140
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=24.86 E-value=63 Score=24.49 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCCC-----chHHHHHHHHHhhCCCCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPADL-----TVGQFVYVVRKRIKLSPE 74 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~~-----tv~~~~~~lRk~L~l~~~ 74 (119)
-|.|||.+-.+.+.+.-..++|||+--...+. +-.+. .--.++|.-. +-.+++.+.+.=..- ..
T Consensus 64 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a-~~ 142 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL-SP 142 (307)
T ss_dssp SCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH-CS
T ss_pred CCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh-cC
Confidence 46799999999999888999999997653221 00010 1123333322 334455444432211 13
Q ss_pred CeEEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 75 KAIFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 75 ~slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
-.++||=+- + ..=...++.+|- ++ +.+.-|.+|+-
T Consensus 143 lPiilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 180 (307)
T 3s5o_A 143 IPVVLYSVPANTGLDLPVDAVVTLS-QH---PNIVGMXDSGG 180 (307)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHh-cC---CCEEEEEcCCC
Confidence 457777541 1 222234566665 22 45777776653
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.78 E-value=94 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=7.9
Q ss_pred ecCCCchHHHHHHHHH
Q 033424 52 VPADLTVGQFVYVVRK 67 (119)
Q Consensus 52 vp~~~tv~~~~~~lRk 67 (119)
+|.+.|-.++..++.+
T Consensus 27 L~~~~t~~~l~~~F~~ 42 (97)
T 2e5j_A 27 LPRDARVSDLKRALRE 42 (97)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHh
Confidence 4455555555554443
No 142
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=24.17 E-value=57 Score=23.78 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=36.8
Q ss_pred CCCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEc
Q 033424 27 PDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK 82 (119)
Q Consensus 27 P~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn 82 (119)
.++|-|-|. . .+ ....|.|.++.++..++.....+.+++..+--|+|=+
T Consensus 27 ~~~I~LkV~-~-~g-----~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG 75 (200)
T 3pge_A 27 ETHINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG 75 (200)
T ss_dssp CCCEEEEEE-C-SS-----CEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETT
T ss_pred CCeEEEEEe-c-CC-----CEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECC
Confidence 356666663 2 11 2457999999999999999999999988776677643
No 143
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=24.09 E-value=77 Score=28.55 Aligned_cols=49 Identities=8% Similarity=0.243 Sum_probs=34.9
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCC-----CeEEEEEcCCCC------CccchHHHHHhhc
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPE-----KAIFIFVKNILP------PTAAMMSAIYEEN 99 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~-----~slfl~Vn~~lp------~~~~~m~~lY~~~ 99 (119)
++-|+.++|+.+|+..+++++++... .+ -||. ...| ..+.+|.+|++.-
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~-~~~~~~~~~~~l~~~l~~l~~~~ 980 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYA-SFFPPKKLKERLNLPITQLVKLV 980 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEE-TTCCHHHHHHHTTSBHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEe-cCCCchhhHHhccCCHHHHHHhh
Confidence 66787899999999999999887532 11 1332 2344 3677899999875
No 144
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.77 E-value=47 Score=25.17 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCC---CchHHHHHHHHHhhCCCCCCe
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPAD---LTVGQFVYVVRKRIKLSPEKA 76 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~s 76 (119)
-|.+||.+-.+...+.-.+++|||+--...+- +-.+. .--.++|.- .+-.+++...+.=..-. .-.
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lP 132 (300)
T 3eb2_A 54 LGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EIP 132 (300)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SSC
T ss_pred cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CCC
Confidence 46799999998888888899999997654321 00000 011223222 13344444444322111 246
Q ss_pred EEEEEcCC---CCCccchHHHHHhhccCCCCeEEEEecCcc
Q 033424 77 IFIFVKNI---LPPTAAMMSAIYEENRDEDGFLYMTYSGEN 114 (119)
Q Consensus 77 lfl~Vn~~---lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~~ 114 (119)
++||=+-. ..=...++.+|- + .+.+.-|.+++-+
T Consensus 133 iilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssgd 169 (300)
T 3eb2_A 133 VVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDASTN 169 (300)
T ss_dssp EEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSSB
T ss_pred EEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCCC
Confidence 78886521 222235777772 3 3668888887643
No 145
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=23.61 E-value=63 Score=20.98 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=35.3
Q ss_pred CCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCC-eEEEEecCccccc
Q 033424 54 ADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDG-FLYMTYSGENTFG 117 (119)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DG-fLyi~Ys~~~~fG 117 (119)
..+++.+++.-+.+.++++.++ + ...++++|-.- ..|| |+ +-+++.||
T Consensus 28 ~~~~F~dL~~eV~~~~~~s~ee---------~---~~~iaqfYTdL-n~DGRFi---~lGen~Wg 76 (99)
T 2krc_A 28 KPVPFQELLNEIASLLGVKKEE---------L---GDRIAQFYTDL-NIDGRFL---ALSDQTWG 76 (99)
T ss_dssp SCEEHHHHHHHHHHHHTSCGGG---------G---THHHHHHHHHH-HTCSSCE---ESSSSEEE
T ss_pred CcccHHHHHHHHHHHhCCCHHH---------H---HHHHHHHHHHH-hccCCee---ECCCCcee
Confidence 5778889988888888766443 1 36789999988 5777 44 45677777
No 146
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.48 E-value=1.1e+02 Score=18.67 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=7.5
Q ss_pred CCeEEEEecCcc
Q 033424 103 DGFLYMTYSGEN 114 (119)
Q Consensus 103 DGfLyi~Ys~~~ 114 (119)
-||-+|.|.+.+
T Consensus 67 ~g~afV~f~~~~ 78 (114)
T 2cq4_A 67 KGIAYVEFCEIQ 78 (114)
T ss_dssp CCCEEEEESCGG
T ss_pred CcEEEEEeCcHH
Confidence 467777776554
No 147
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.41 E-value=53 Score=24.95 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCC---CchHHHHHHHHHhhCCCCCCe
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPAD---LTVGQFVYVVRKRIKLSPEKA 76 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~s 76 (119)
-|.|||.+-.+...+.-..++|||+--...+- +-.+. .--.++|.. .+-.++..+.+.=..-. +-.
T Consensus 65 Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 143 (304)
T 3l21_A 65 TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELP 143 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 46799999999998888899999997654321 00000 011233322 13345555554433222 456
Q ss_pred EEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 77 IFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
++||=+- + ..=...++.+|- ++ +.+.-|.+++-
T Consensus 144 iilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 144 MLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp EEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred EEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 8888541 1 222345667775 33 56777877764
No 148
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=23.16 E-value=1.2e+02 Score=22.57 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=38.2
Q ss_pred ceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCC-CCeEEEEecCc
Q 033424 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDE-DGFLYMTYSGE 113 (119)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~-DGfLyi~Ys~~ 113 (119)
+..-|.=..+++..+|...+++.-.+ |+.| .|++. .+.++|++..++ |..|+++.|+.
T Consensus 33 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 33 SGAIYRDWEEITPTEIFQKVREGAAF-PTTS--------QPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTEEEETTTTCCHHHHHHHHHTTCCC-CEEE--------CCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-cccC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 34455555678999999988763222 2322 45443 677888887554 77999998874
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=22.96 E-value=1.2e+02 Score=18.41 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=12.8
Q ss_pred cchHHHHHhhccCC------CCeEEEEecCc
Q 033424 89 AAMMSAIYEENRDE------DGFLYMTYSGE 113 (119)
Q Consensus 89 ~~~m~~lY~~~kd~------DGfLyi~Ys~~ 113 (119)
...|.+++..|... -||-+|.|.+.
T Consensus 42 ~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~ 72 (110)
T 1wf1_A 42 KSDVETIFSKYGRVAGCSVHKGYAFVQYSNE 72 (110)
T ss_dssp HHHHHHHHGGGSCCSEEEEETTEEEEECSSS
T ss_pred HHHHHHHHHhCCCeEEEEEeCCEEEEEECCH
Confidence 33455555555431 35666666554
No 150
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=22.82 E-value=90 Score=20.01 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=28.4
Q ss_pred CccceeEEEecCCCchHHHHHHHHHhhCCCCCC
Q 033424 43 PEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEK 75 (119)
Q Consensus 43 p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~ 75 (119)
|...+.+..|.++.++.|+...-.++.++++++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~ 49 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSE 49 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGG
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhh
Confidence 345678889999999999999999999998765
No 151
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.72 E-value=57 Score=24.47 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCCC---chHHHHHHHHHhhCCCCCCe
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPADL---TVGQFVYVVRKRIKLSPEKA 76 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (119)
-|.|||.+-.+...+.-.+++|||+--...+. +-.+. .--.++|.-. +-.++..+.+.=..- ..-.
T Consensus 50 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lP 128 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INLP 128 (289)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 46799999888888888889999988765321 00000 0112223221 334444444322111 1235
Q ss_pred EEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 77 IFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
++||=+- + ..=...++.+|-+++ +.+.-|..|+-
T Consensus 129 iilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 129 IVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 7777642 1 222345688886444 55777777654
No 152
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=22.66 E-value=75 Score=24.19 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc--eeEEEecCCC---chHHHHHHHHHhhCCCCCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID--KKKYLVPADL---TVGQFVYVVRKRIKLSPEK 75 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~--k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~ 75 (119)
-|.+||.+-.+...+.-..++|||+--...+- +-.+. .--.++|.-. +-.++..+.+.=..- ..-
T Consensus 57 Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~l 135 (311)
T 3h5d_A 57 LTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SDL 135 (311)
T ss_dssp SCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCC
Confidence 46799999999999988999999997654320 11111 1122333221 334455555433221 245
Q ss_pred eEEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecC
Q 033424 76 AIFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSG 112 (119)
Q Consensus 76 slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~ 112 (119)
.++||=+- + ..=...++.+|-+ .+.+.-|.+|+
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~----~pnIvgiKdss 171 (311)
T 3h5d_A 136 PIIIYNIPGRVVVELTPETMLRLAD----HPNIIGVKECT 171 (311)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHHT----STTEEEEEECS
T ss_pred CEEEEecccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 67887541 1 2222345667753 25677777776
No 153
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=22.65 E-value=1.3e+02 Score=22.80 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=35.5
Q ss_pred ceeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 46 DKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 46 ~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
+..-|.=..+++..+|...++..-.+ |+.| .|++. .+.++|++ +-|..|+++.|+.
T Consensus 52 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~--~~~~Ii~i~iSs~ 107 (298)
T 3jr7_A 52 EDTQWTDDDSLKQEELLLKIAESTSC-AKTS--------CPSPE-RYMESYHC--DAERIYVVTLSAE 107 (298)
T ss_dssp TTEEEECSTTSCHHHHHHHHHHCSSC-CEEE--------CCCHH-HHHHHHCS--SCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-ceeC--------CCCHH-HHHHHHHh--cCCeEEEEECCcc
Confidence 44455555688999999988764212 2222 44443 35666664 4678999999874
No 154
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=22.64 E-value=99 Score=20.03 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=38.4
Q ss_pred eeEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHH
Q 033424 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAI 95 (119)
Q Consensus 47 k~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~l 95 (119)
-..|.|-.+..+..++...-+|.+++.+.-.|||=+..+ +.++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 457899999999999999999999999988888755444 445555665
No 155
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=22.62 E-value=58 Score=24.42 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-.+++|||+--...
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~ 80 (291)
T 3a5f_A 51 MTETERKETIKFVIDKVNKRIPVIAGTGSN 80 (291)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCcc
Confidence 467999998888888888999999877643
No 156
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=22.61 E-value=1.3e+02 Score=19.27 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=31.7
Q ss_pred cCCCCCCccceeEEEe-cCCCchHHHHHHHHHhhCCCCCCeEEEEEcC
Q 033424 37 AEKSDVPEIDKKKYLV-PADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 (119)
Q Consensus 37 ~~~~~~p~L~k~Kflv-p~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~ 83 (119)
-+.++.|++... +++ |...|+.+|.+.|.+.|.-+ -.|-.|-+
T Consensus 17 k~~G~~pd~~dp-viL~~~GsTv~Dfa~~IH~di~~~---fkyA~VwG 60 (93)
T 2eki_A 17 KPKGQLPDYTSP-VVLPYSRTTVEDFCMKIHKNLIKE---FKYALVWG 60 (93)
T ss_dssp CCTTSCCCSSSC-EEEETTSCCHHHHHHHHCTTCTTT---EEEEEEBS
T ss_pred CCCCCCCCCCCC-EEEecCCCCHHHHHHHHHHHHHhh---ccEEEEec
Confidence 456778888775 455 99999999999999887433 44666643
No 157
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=22.46 E-value=57 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEcc
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERA 37 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~ 37 (119)
-|.+||.+-.+...+.-..++|||+--.
T Consensus 62 Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 62 LSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 4679999989988888889999999865
No 158
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.33 E-value=59 Score=24.84 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
-|.+||.+-.+...+.-..++|||+--..
T Consensus 73 Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 73 LDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 46799999888888888899999997654
No 159
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.33 E-value=78 Score=23.79 Aligned_cols=101 Identities=9% Similarity=0.021 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCC----CchHHHHHHHHHhhCCCC--
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPAD----LTVGQFVYVVRKRIKLSP-- 73 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~----~tv~~~~~~lRk~L~l~~-- 73 (119)
-|.|||.+-.+...+.-..++|||+--...+- +-.+. .--.++|.- .+-.++..+.+.=..-.+
T Consensus 53 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~ 132 (294)
T 3b4u_A 53 VGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKD 132 (294)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999888899999988765321 00000 011222221 133444444443221111
Q ss_pred CCeEEEEEcC--C-CCCccchHHHHHhhccCCCC-eEEEEecCc
Q 033424 74 EKAIFIFVKN--I-LPPTAAMMSAIYEENRDEDG-FLYMTYSGE 113 (119)
Q Consensus 74 ~~slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DG-fLyi~Ys~~ 113 (119)
.-.+++|=+- + ..=...++.+|-+++ +. +.-|.+|+-
T Consensus 133 ~lPiilYn~P~~tg~~l~~~~~~~La~~~---pn~ivgiKds~g 173 (294)
T 3b4u_A 133 ARDILVYNIPSVTMVTLSVELVGRLKAAF---PGIVTGVKDSSG 173 (294)
T ss_dssp CCCEEEEECHHHHSCCCCHHHHHHHHHHC---TTTEEEEEECCC
T ss_pred CCcEEEEECcchhCcCCCHHHHHHHHHhC---CCcEEEEEECCC
Confidence 3357777641 1 222345688886444 45 777777764
No 160
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.22 E-value=60 Score=24.48 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 9 EHPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 9 ~~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
.-|.+||.+-.+...+.-..++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999888888899999997654
No 161
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=22.21 E-value=59 Score=24.44 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCCC---chHHHHHHHHHhhCCCCCC
Q 033424 9 EHPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPADL---TVGQFVYVVRKRIKLSPEK 75 (119)
Q Consensus 9 ~~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~ 75 (119)
.-|.|||.+-.+...+.-.+++|||+--...+. +-.+. .--.++|.-. +-.++..+.+.=..- ..-
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~l 127 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE-VDI 127 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 346799999888888888889999987765321 00000 0112233221 334444444322111 123
Q ss_pred eEEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 76 AIFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 76 slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
.++||=+- + ..=...++.+|-+++ +.+.-|.+|+-
T Consensus 128 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKds~g 165 (294)
T 2ehh_A 128 PIIIYNIPSRTCVEISVDTMFKLASEC---ENIVASKESTP 165 (294)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCCcccCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 57777542 1 222335677776444 45666766653
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=22.11 E-value=1.2e+02 Score=19.72 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEcCCCC-CccchHHHHHhhccC---------CCCeEEEEecCcc
Q 033424 78 FIFVKNILP-PTAAMMSAIYEENRD---------EDGFLYMTYSGEN 114 (119)
Q Consensus 78 fl~Vn~~lp-~~~~~m~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (119)
-|||.|--+ -.+..|.+++..|.. .-||-+|.|.+.+
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPR 121 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHH
Confidence 355666433 245568888888843 2588888887654
No 163
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=22.07 E-value=61 Score=24.32 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 9 EHPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 9 ~~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
.-|.+||.+-.+...+.-..++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 50 TLSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 346799999998888888899999997654
No 164
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.98 E-value=60 Score=24.67 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-..++|||+--...
T Consensus 58 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 87 (309)
T 3fkr_A 58 ITDDERDVLTRTILEHVAGRVPVIVTTSHY 87 (309)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 467999998888888888999999987543
No 165
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.96 E-value=61 Score=18.61 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=28.0
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccc
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAA 90 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~ 90 (119)
...-+|...|+.++...+...+ +.+++-.-||+.+...+.
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l---~~~~vaa~vNg~lvdl~~ 50 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDL---GDHCIGAKVNHKLVPLSY 50 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHH---HHTEEEEEETTEECCTTC
T ss_pred CEEEcCCCCcHHHHHHHHhhcc---ccceEEEEECCEEeCCCc
Confidence 4567889999999988774444 245677788987555553
No 166
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=21.93 E-value=59 Score=24.64 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-..++|||+--...
T Consensus 66 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 95 (304)
T 3cpr_A 66 TTAAEKLELLKAVREEVGDRAKLIAGVGTN 95 (304)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEecCCCC
Confidence 467999998888888888999999887653
No 167
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.85 E-value=62 Score=24.30 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-.+++|||+--...
T Consensus 51 Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~ 80 (292)
T 2ojp_A 51 LNHDEHADVVMMTLDLADGRIPVIAGTGAN 80 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCc
Confidence 467999998888888888899999877653
No 168
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=21.70 E-value=61 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-..++|||+--...
T Consensus 54 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 83 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKDEAKDQIALIAQVGSV 83 (293)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 467999998888888888999999877653
No 169
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=21.61 E-value=61 Score=20.73 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhCCCCccEEEEcc
Q 033424 14 RRQAEAARIRDKYPDRIPVIVERA 37 (119)
Q Consensus 14 ~R~~e~~~ir~k~P~kipVIvE~~ 37 (119)
+|+--+|.++.+||++| .||.-
T Consensus 41 ~RkLIYQ~~~~kfp~~i--~vet~ 62 (87)
T 1ug8_A 41 QRKLIYQTLSWKYPKGI--HVETL 62 (87)
T ss_dssp HHHHHHHHHHHHSSSSE--EEEEE
T ss_pred HHHHHHHHHHHhcCCce--EEEEE
Confidence 46668999999999998 44443
No 170
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.51 E-value=55 Score=25.04 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCC---CchHHHHHHHHHhhCCCCCCe
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPAD---LTVGQFVYVVRKRIKLSPEKA 76 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~s 76 (119)
-|.+||.+-.+...+.-..++|||+--...+- +-.+. .--.++|.- .+-.+++.+.+.=..-. .-.
T Consensus 74 Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lP 152 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI-GVP 152 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC-SSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCc
Confidence 46799999999988888899999997654321 00000 011222221 12344444444222111 246
Q ss_pred EEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 77 IFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
++||=+- + ..=...++.+|-.++ +.+.-|.+++-
T Consensus 153 iilYn~P~~tg~~l~~~~~~~L~a~~---pnIvgiKdssg 189 (315)
T 3na8_A 153 VMLYNNPGTSGIDMSVELILRIVREV---DNVTMVKESTG 189 (315)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHS---TTEEEEEECSS
T ss_pred EEEEeCcchhCcCCCHHHHHHHHhcC---CCEEEEECCCC
Confidence 7887641 1 222235778885555 45777887764
No 171
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.29 E-value=62 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
-|.|||.+-.+...+.-..++|||+--..
T Consensus 61 Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 61 QSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 46799999888888888889999997654
No 172
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=21.20 E-value=65 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
-|.+||.+-.+...+.-..++|||+--..
T Consensus 52 Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 80 (292)
T 3daq_A 52 LTTDEKELILKTVIDLVDKRVPVIAGTGT 80 (292)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 46799999888888888899999997654
No 173
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.05 E-value=63 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAE 38 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~ 38 (119)
-|.|||++-.+...+.-..++|||+--..
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~ 90 (314)
T 3d0c_A 62 LTIEEAKQVATRVTELVNGRATVVAGIGY 90 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 46799999888888888899999997765
No 174
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=20.94 E-value=1.2e+02 Score=16.83 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=8.9
Q ss_pred CCeEEEEecCcc
Q 033424 103 DGFLYMTYSGEN 114 (119)
Q Consensus 103 DGfLyi~Ys~~~ 114 (119)
-|+-+|.|.+.+
T Consensus 41 ~g~afV~f~~~~ 52 (75)
T 1iqt_A 41 RGFCFITFKEEE 52 (75)
T ss_dssp CCCEEEECSSSH
T ss_pred CCEEEEEECCHH
Confidence 578888887764
No 175
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.78 E-value=67 Score=24.30 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-..++|||+--...
T Consensus 62 Ls~eEr~~v~~~~~~~~~grvpViaGvg~~ 91 (301)
T 1xky_A 62 LTSEEKVALYRHVVSVVDKRVPVIAGTGSN 91 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEeCCCCC
Confidence 467999998888888888999999877653
No 176
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=20.74 E-value=1.4e+02 Score=18.82 Aligned_cols=60 Identities=15% Similarity=0.357 Sum_probs=39.5
Q ss_pred EEEec-CCCchHHHHHHHHHhhCCCCC-CeEEEEEcCC------------C---CCccchHHHHHhhccC-CCCeEEEEe
Q 033424 49 KYLVP-ADLTVGQFVYVVRKRIKLSPE-KAIFIFVKNI------------L---PPTAAMMSAIYEENRD-EDGFLYMTY 110 (119)
Q Consensus 49 Kflvp-~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn~~------------l---p~~~~~m~~lY~~~kd-~DGfLyi~Y 110 (119)
..-|. .+.||++|...|..+.++++. +.|++ ++. + ...+.+|+++ .- .+..|||.|
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~ 93 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAY 93 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEe
Confidence 34578 899999999999999998754 44443 322 1 2445566543 22 344789888
Q ss_pred cCcc
Q 033424 111 SGEN 114 (119)
Q Consensus 111 s~~~ 114 (119)
..+.
T Consensus 94 ~~~~ 97 (107)
T 1wf9_A 94 EGER 97 (107)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 177
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=20.57 E-value=1.7e+02 Score=21.69 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=33.2
Q ss_pred eEEEecCCCchHHHHHHHHHhhCCCCCC--eEEEEEcC---CCCCccchHHH
Q 033424 48 KKYLVPADLTVGQFVYVVRKRIKLSPEK--AIFIFVKN---ILPPTAAMMSA 94 (119)
Q Consensus 48 ~Kflvp~~~tv~~~~~~lRk~L~l~~~~--slfl~Vn~---~lp~~~~~m~~ 94 (119)
..+.|....|+.++...|.++|+|...+ +|++.-++ .-..++..+.+
T Consensus 30 ~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~ 81 (296)
T 3qij_A 30 YECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKK 81 (296)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHH
Confidence 4678999999999999999999999876 45533222 12344555543
No 178
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.56 E-value=59 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-.+++|||+--...
T Consensus 50 Ls~~Er~~v~~~~~~~~~grvpviaGvg~~ 79 (297)
T 2rfg_A 50 LTEEEHKRVVALVAEQAQGRVPVIAGAGSN 79 (297)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCBEEECCCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEccCCC
Confidence 467999998888888888899999887653
No 179
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.51 E-value=66 Score=24.81 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCC
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEK 39 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~ 39 (119)
-|.|||.+-.+...+.-.+++|||+--...
T Consensus 84 Ls~eEr~~vi~~~ve~~~grvpViaGvg~~ 113 (332)
T 2r8w_A 84 LTREERRRAIEAAATILRGRRTLMAGIGAL 113 (332)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 467999998888888888999999976543
No 180
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.43 E-value=1.1e+02 Score=18.28 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=7.3
Q ss_pred cCCCchHHHHHHHHH
Q 033424 53 PADLTVGQFVYVVRK 67 (119)
Q Consensus 53 p~~~tv~~~~~~lRk 67 (119)
|.+.|-.++..++.+
T Consensus 9 p~~~t~~~l~~~F~~ 23 (101)
T 2hvz_A 9 GTGAGKGELERAFSY 23 (101)
T ss_dssp CSSCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 444555555444443
No 181
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.41 E-value=68 Score=24.29 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCccEEEEccCCCC---------CCccc-eeEEEecCCC---chHHHHHHHHHhhCCCCCCe
Q 033424 10 HPLERRQAEAARIRDKYPDRIPVIVERAEKSD---------VPEID-KKKYLVPADL---TVGQFVYVVRKRIKLSPEKA 76 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~kipVIvE~~~~~~---------~p~L~-k~Kflvp~~~---tv~~~~~~lRk~L~l~~~~s 76 (119)
-|.|||.+-.+...+.-..++|||+--...+. +-.+. .--.++|.-. +-.++....+.=..- ..-.
T Consensus 62 Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lP 140 (306)
T 1o5k_A 62 VNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER-TDLG 140 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT-CSSC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCC
Confidence 46799999888888887889999987765321 00000 0112233322 335555555443321 2346
Q ss_pred EEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 77 IFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 77 lfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
++||=+- + ..=...++.+|-+++ +.+.-|.+|+-
T Consensus 141 iilYn~P~~tg~~l~~~~~~~La~~~---pnIvgiKdssg 177 (306)
T 1o5k_A 141 IVVYNVPGRTGVNVLPETAARIAADL---KNVVGIXEANP 177 (306)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCC
T ss_pred EEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEeCCCC
Confidence 7777642 1 222345677776444 55777777653
No 182
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.25 E-value=96 Score=20.22 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCCeEEEEEc-CCCC--CccchHHHHHhhccCC--------CCeEEEEecCc
Q 033424 73 PEKAIFIFVK-NILP--PTAAMMSAIYEENRDE--------DGFLYMTYSGE 113 (119)
Q Consensus 73 ~~~slfl~Vn-~~lp--~~~~~m~~lY~~~kd~--------DGfLyi~Ys~~ 113 (119)
++.. |||. ..|| -.+..|.+++.+|... -||=+|+|++.
T Consensus 24 pt~~--L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~ 73 (114)
T 2cq2_A 24 ATQS--LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTT 73 (114)
T ss_dssp CCSE--EEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSH
T ss_pred CCCE--EEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCH
Confidence 4444 4553 2444 3556888999888641 36777777654
No 183
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.25 E-value=68 Score=24.20 Aligned_cols=100 Identities=5% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhhCCC-CccEEEEccCCCC---------CCccc-eeEEEecCC---CchHHHHHHHHHhhCCCCCC
Q 033424 10 HPLERRQAEAARIRDKYPD-RIPVIVERAEKSD---------VPEID-KKKYLVPAD---LTVGQFVYVVRKRIKLSPEK 75 (119)
Q Consensus 10 ~~~e~R~~e~~~ir~k~P~-kipVIvE~~~~~~---------~p~L~-k~Kflvp~~---~tv~~~~~~lRk~L~l~~~~ 75 (119)
-|.|||.+-.+...+.-.. ++|||+--...+- +-.+. .--.++|.- .+-.++..+.+.=..- ..-
T Consensus 57 Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~l 135 (301)
T 3m5v_A 57 LTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS-VDI 135 (301)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCC
Confidence 4679999988888888888 9999997654321 00000 011222221 1223444444322111 134
Q ss_pred eEEEEEcC--C-CCCccchHHHHHhhccCCCCeEEEEecCc
Q 033424 76 AIFIFVKN--I-LPPTAAMMSAIYEENRDEDGFLYMTYSGE 113 (119)
Q Consensus 76 slfl~Vn~--~-lp~~~~~m~~lY~~~kd~DGfLyi~Ys~~ 113 (119)
.++||=+- + ..=...++.+|-+.+ +.+.-|.+|+-
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiKdssg 173 (301)
T 3m5v_A 136 PVLLYNVPGRTGCEISTDTIIKLFRDC---ENIYGVKEASG 173 (301)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECSS
T ss_pred CEEEEeCchhhCcCCCHHHHHHHHhcC---CCEEEEEeCCC
Confidence 57777541 1 222334677776544 45777777654
No 184
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=20.17 E-value=1.2e+02 Score=23.36 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=37.8
Q ss_pred EEEecCCCchHHHHHHHHHhhCCCCCCeEEEEEcCCCCCccchHHHHHhhccC-CCCeEEEE
Q 033424 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRD-EDGFLYMT 109 (119)
Q Consensus 49 Kflvp~~~tv~~~~~~lRk~L~l~~~~slfl~Vn~~lp~~~~~m~~lY~~~kd-~DGfLyi~ 109 (119)
..-|+.+.||+++...|..+.++++++- =|+.++.....+.+|++. .- ++..|+|.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~Q-RLi~~Gk~L~D~~TLsdy----gI~~gstL~Lv 303 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 303 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHE-EEEeCCeecCCCCCHHHc----CCCCCCEEEEE
Confidence 3468999999999999999999986643 233456544566666543 22 34456654
No 185
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.08 E-value=38 Score=20.05 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHhhCCCCC-CeEEEEEcCCC-CCccch
Q 033424 54 ADLTVGQFVYVVRKRIKLSPE-KAIFIFVKNIL-PPTAAM 91 (119)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~-~slfl~Vn~~l-p~~~~~ 91 (119)
...|++++...|..+-++..- +.+-+.||+.. +..+..
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC
Confidence 567999999988765333321 45778899864 654443
No 186
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.00 E-value=1.9e+02 Score=18.67 Aligned_cols=48 Identities=8% Similarity=0.119 Sum_probs=33.6
Q ss_pred CCccEEEEccCCCCCCccceeEEEecCCCchHHHHHHHHHhhCCCCCC-eEEEE
Q 033424 28 DRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEK-AIFIF 80 (119)
Q Consensus 28 ~kipVIvE~~~~~~~p~L~k~Kflvp~~~tv~~~~~~lRk~L~l~~~~-slfl~ 80 (119)
+.|.|.|...... ...-.-|+.+.||+++...|..+.++++++ .|++.
T Consensus 5 ~~v~l~V~~~~~~-----~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNATD-----FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSCC-----SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCCC-----ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 3567777654222 123456999999999999999999998764 44443
Done!