Query 033425
Match_columns 119
No_of_seqs 104 out of 178
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 23:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 99.7 2.3E-17 7.8E-22 114.1 4.1 55 18-84 20-77 (85)
2 2lqt_A Coiled-coil-helix-coile 93.0 0.13 4.4E-06 35.4 4.3 42 27-81 16-57 (85)
3 2lql_A Coiled-coil-helix-coile 54.5 7.1 0.00024 27.3 2.3 42 18-72 52-93 (113)
4 2l3i_A Aoxki4A, antimicrobial 52.8 2.3 7.8E-05 23.8 -0.4 25 70-96 3-28 (30)
5 1ei0_A P8MTCP1; helix-turn-hel 47.6 19 0.00065 20.7 3.0 31 29-71 5-35 (38)
6 1hp8_A HU-P8; leukemia, cystei 34.7 25 0.00086 22.9 2.4 38 26-76 6-43 (68)
7 3r2c_J Protein NUSE, 30S ribos 17.7 17 0.00057 24.2 -1.0 18 90-108 27-44 (83)
8 1ycp_F Fibrinopeptide A-alpha; 17.1 27 0.00092 19.0 -0.1 13 91-104 7-19 (26)
9 1f8v_D Mature capsid protein g 16.4 58 0.002 19.3 1.3 19 87-105 5-26 (40)
10 3gor_A Putative metal-dependen 16.3 1.4E+02 0.0049 19.1 3.4 11 72-82 7-17 (157)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=99.67 E-value=2.3e-17 Score=114.13 Aligned_cols=55 Identities=18% Similarity=0.418 Sum_probs=46.6
Q ss_pred hhchHHHHHHHHcchhhHhh---hhhcCCCCcchhhhcCCCchhhhHHHHHHHHHhcHHHHHHHHHHHHH
Q 033425 18 DVLLKARQACYKSRDAFYDC---LEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYC 84 (119)
Q Consensus 18 ~~~r~~Rk~CW~aRD~YF~C---LDk~~i~~p~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~rr~~ 84 (119)
.|++.+|+.||.+||.||.| ||+++.. .+.|+.+++.|+..||.|||+||++++.
T Consensus 20 FPn~nq~k~Cw~~y~df~~C~~~l~~~ged------------~~~C~~~~~~y~slCP~sWVe~wdeqR~ 77 (85)
T 1v54_H 20 FPNQNQTRNCWQNYLDFHRCEKAMTAKGGD------------VSVCEWYRRVYKSLCPISWVSTWDDRRA 77 (85)
T ss_dssp SCSSBCHHHHHHHHHHHHHHHHHHHHHTCC------------GGGGHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCc------------hHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 36789999999999999999 5556532 2779999999999999999999995543
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=92.98 E-value=0.13 Score=35.44 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=36.3
Q ss_pred HHHcchhhHhhhhhcCCCCcchhhhcCCCchhhhHHHHHHHHHhcHHHHHHHHHH
Q 033425 27 CYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR 81 (119)
Q Consensus 27 CW~aRD~YF~CLDk~~i~~p~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r 81 (119)
|+++.++=+.||++|+-. ...|...-..|. +|-..|..--.+
T Consensus 16 C~~e~~~S~kCL~~n~yD------------r~~C~~yF~~Yk-~CKk~W~~v~~e 57 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYD------------RERCSTYFLRYK-NCRRFWNSIVMQ 57 (85)
T ss_dssp CHHHHHHHHHHHHHTTTC------------TTTTHHHHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCcc------------HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999843 377999999997 899999876554
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=54.47 E-value=7.1 Score=27.31 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=34.3
Q ss_pred hhchHHHHHHHHcchhhHhhhhhcCCCCcchhhhcCCCchhhhHHHHHHHHHhcH
Q 033425 18 DVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCR 72 (119)
Q Consensus 18 ~~~r~~Rk~CW~aRD~YF~CLDk~~i~~p~e~~~v~~~~~~~C~~er~~FE~~C~ 72 (119)
+..+.=++.|=+-=.+|+.||+.|+.. ...|.++.+.|. .|+
T Consensus 52 p~~~~I~~~C~~ef~~y~~CL~~n~~~------------~~~Cr~~~~~f~-~Ca 93 (113)
T 2lql_A 52 PIIRQIRQACAQPFEAFEECLRQNEAA------------VGNCAEHMRRFL-QCA 93 (113)
T ss_dssp CCCHHHHHHTHHHHHHHHHHHHHCTTC------------TTTCCSHHHHHH-HHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcccc------------HHHHHHHHHHHH-HHH
Confidence 356788999999999999999998732 156999999998 676
No 4
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=52.78 E-value=2.3 Score=23.77 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=15.6
Q ss_pred hcHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 033425 70 HCRASWV-KHFDRLYCKNKRVTRLLDDG 96 (119)
Q Consensus 70 ~C~~SWV-kyF~rr~~~~kr~~kll~eg 96 (119)
-||.||. +-|+++ ..+|+-.|+.+-
T Consensus 3 rcpkswkckafkqr--vlkrllamlrqh 28 (30)
T 2l3i_A 3 RCPKSWKCKAFKQR--VLKRLLAMLRQH 28 (30)
T ss_dssp CSSSCSCCCHHHHH--HHHHHHHHHHTC
T ss_pred CCCcchhHHHHHHH--HHHHHHHHHHHh
Confidence 3888885 677654 245666666553
No 5
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=47.58 E-value=19 Score=20.65 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=23.2
Q ss_pred HcchhhHhhhhhcCCCCcchhhhcCCCchhhhHHHHHHHHHhc
Q 033425 29 KSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHC 71 (119)
Q Consensus 29 ~aRD~YF~CLDk~~i~~p~e~~~v~~~~~~~C~~er~~FE~~C 71 (119)
..-.+|..||.+|+.. .+.|...-..+.+=|
T Consensus 5 ~~a~a~q~CL~~n~~d------------~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 5 KQAAEIQKCLQANSYL------------ESKCQAVIQELKKCA 35 (38)
T ss_dssp HHHHHHHHHHHHTTTC------------GGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCc------------HHHHHHHHHHHHHHH
Confidence 3446899999998743 377999888887554
No 6
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=34.68 E-value=25 Score=22.86 Aligned_cols=38 Identities=24% Similarity=0.523 Sum_probs=28.8
Q ss_pred HHHHcchhhHhhhhhcCCCCcchhhhcCCCchhhhHHHHHHHHHhcHHHHH
Q 033425 26 ACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWV 76 (119)
Q Consensus 26 ~CW~aRD~YF~CLDk~~i~~p~e~~~v~~~~~~~C~~er~~FE~~C~~SWV 76 (119)
-|=..-.+|..||.+|+-. .+.|...-..+. .|-..|.
T Consensus 6 PC~~~AcaiQ~CL~~N~yd------------~skCq~~id~L~-eCc~~~~ 43 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYM------------ESKCQAVIQELR-KCCAQYP 43 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTC------------HHHHHHHHHHHH-HHHTTSC
T ss_pred chHHHHHHHHHHHHHcCCc------------HHHHHHHHHHHH-HHHHHHc
Confidence 3566667899999998743 378999999988 4556664
No 7
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=17.68 E-value=17 Score=24.18 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=13.2
Q ss_pred HHHHhcCCCcccCCCCCCC
Q 033425 90 TRLLDDGGETRRGPLTLPQ 108 (119)
Q Consensus 90 ~kll~ega~~~~g~~~~p~ 108 (119)
......|+. ++||+.||-
T Consensus 27 ~~ak~~g~~-v~GPipLPT 44 (83)
T 3r2c_J 27 ETVKRTGGV-VKGPIPLPT 44 (83)
T ss_dssp HHHHHTTCE-EEEEEEEEE
T ss_pred HHHHHhCCe-eeCCcCCCC
Confidence 344457777 999999983
No 8
>1ycp_F Fibrinopeptide A-alpha; fibrinopeptide-A, complex (serine protease-peptide), thrombi hydrolase-hydrolase substrate complex; 2.50A {Bos taurus}
Probab=17.12 E-value=27 Score=19.03 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=10.2
Q ss_pred HHHhcCCCcccCCC
Q 033425 91 RLLDDGGETRRGPL 104 (119)
Q Consensus 91 kll~ega~~~~g~~ 104 (119)
.++++|+. +|||-
T Consensus 7 ef~~eGGg-vRGPR 19 (26)
T 1ycp_F 7 DYLAEGGG-VRGPR 19 (26)
T ss_pred ceeecCCC-ccCCe
Confidence 46788988 99983
No 9
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=16.37 E-value=58 Score=19.31 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=6.6
Q ss_pred HHHHHHHhcC---CCcccCCCC
Q 033425 87 KRVTRLLDDG---GETRRGPLT 105 (119)
Q Consensus 87 kr~~kll~eg---a~~~~g~~~ 105 (119)
.|++++|.++ ++..|||+-
T Consensus 5 ErVk~ilks~l~~aS~iPGPVG 26 (40)
T 1f8v_D 5 EGVLRVLNQISGTLSVIPGPVG 26 (40)
T ss_dssp HHHHHHHHHTCCC---------
T ss_pred HHHHHHHHHHHHHHhcCCCchh
Confidence 4667777765 455778763
No 10
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=16.31 E-value=1.4e+02 Score=19.15 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 033425 72 RASWVKHFDRL 82 (119)
Q Consensus 72 ~~SWVkyF~rr 82 (119)
+..|++||..-
T Consensus 7 ~~~~l~~~~~~ 17 (157)
T 3gor_A 7 AKKWVQYFLSH 17 (157)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45799999854
Done!