BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033426
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 209 bits (532), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 107/113 (94%)
Query: 3 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL 62
A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVL
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 71
Query: 63 FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
FLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVG+KK+ELQ TIAKHLA
Sbjct: 72 FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 88/110 (80%)
Query: 4 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLF 63
AEEGQVI CHTV+ W E +K +++L+VVDFTASWC PC+ IAP AELAKK PNV F
Sbjct: 1 AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTF 60
Query: 64 LKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 113
LKVDVDELK+VA +W VEAMPTF+FLK+GK+VDK VG+ K+ L +AKH
Sbjct: 61 LKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKH 110
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 84/111 (75%)
Query: 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68
VI CH + ++ Q+ K+ E ++V++DFTASWCGPCRFIAP AE AKK P +FLKVDV
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 75
Query: 69 DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 119
DELK VA + VEAMPTF+F+K+G DKVVG++K++LQ TI KH+ +A
Sbjct: 76 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 126
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 84/116 (72%)
Query: 3 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL 62
AAEEG VI CHT + ++ + +T +LV++DFTASWCGPCR IAP AE AKK P +
Sbjct: 2 AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI 61
Query: 63 FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 118
FLKVDVDELK VA + VEAMPTF+F+K+G+ VD VVG +K+++ I + +AS
Sbjct: 62 FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVALMGSAS 117
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 84/108 (77%)
Query: 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67
+VI H++E W Q++++N K+LVV+DFTASWCGPCR +AP A+LAKK PN +FLKVD
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 68 VDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
VDELK +A ++VEAMPTF+F+KEG + D+VVG+ KEEL + H A
Sbjct: 73 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAA 120
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 83/108 (76%)
Query: 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67
+VI H++E W Q++++N K+LVV+DFTASWCGP R +AP A+LAKK PN +FLKVD
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 68 VDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
VDELK +A ++VEAMPTF+F+KEG + D+VVG+ KEEL + H A
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHAA 123
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 72/104 (69%)
Query: 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66
G V T E W+++L +++ ++V+ +F+A WCGPC+ IAP+ EL++ P+++FL +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVI 83
Query: 67 DVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
DVDEL + W ++A PTF FL++G+ VDK+VG+ K EL + I
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 71/104 (68%)
Query: 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66
G V T E W+++L +++ ++V+ +F+A WCGP R IAP+ EL++ P+++FL +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVI 83
Query: 67 DVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
DVDEL + W ++A PTF FL++G+ VDK+VG+ K EL + I
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 26 NETK-QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMP 84
NE K +L+VVDF A WCGPCR IAP + LAK++P V F KVDVD+ + A ++V AMP
Sbjct: 15 NENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMP 74
Query: 85 TFMFLKEGKIVDKVVGSKKEELQQTIAKH 113
TF+F+K+GK VD+ G+ + +L++TI +H
Sbjct: 75 TFVFIKDGKEVDRFSGANETKLRETITRH 103
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V++MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V++MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 EXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+A PTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 EAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDV++ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA 75
E + +QL ++ +LVV+DF A+WCGPC+ IAP L EL++ + +V+FLKVDVDE + +A
Sbjct: 9 EDFTKQLNEAG--NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIA 66
Query: 76 TDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 113
D + MPTF+F+K G+ +D + G+ ++L + + K+
Sbjct: 67 QDNQIACMPTFLFMKNGQKLDSLSGANYDKLLELVEKN 104
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Query: 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66
G V + A+ E L + + +LVVVDF+A+WCGP + I PF L++K NV+FL+V
Sbjct: 11 GSVKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEV 68
Query: 67 DVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
DVD+ + VA++ V++MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 69 DVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 112
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ PTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKCTPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGP + I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V++MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGP + I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKRMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGP + I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+A PTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 EAEVKATPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+W GP + I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 ECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP + + +++ P F K+DVDEL VA V AMPT +
Sbjct: 19 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 78
Query: 90 KEGKIVDKVVGSKKEELQQTIAKH 113
K GK V KVVG+ ++Q IA +
Sbjct: 79 KNGKEVAKVVGANPAAIKQAIAAN 102
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP + + +++ P F K+DVDEL VA V AMPT +
Sbjct: 25 KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 84
Query: 90 KEGKIVDKVVGSKKEELQQTIAKH 113
K GK V KVVG+ ++Q IA +
Sbjct: 85 KNGKEVAKVVGANPAAIKQAIAAN 108
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP + + A++ + F K+DVDE+ VA V +MPT +F
Sbjct: 20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K GK V +VVG+ ++Q IA ++
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP + + A++ + F K+DVDE+ VA V +MPT +F
Sbjct: 27 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 86
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K GK V +VVG+ ++Q IA ++
Sbjct: 87 KGGKEVTRVVGANPAAIKQAIASNV 111
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMF 88
+LV+VDF A WCGPC+ IAPF E +K ++F+KVDVDE+ V + +MPTF
Sbjct: 26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKV 85
Query: 89 LKEGKIVDKVVGSKKEELQQTIAKHLA 115
K G VD ++G+ L+Q I K+ A
Sbjct: 86 YKNGSSVDTLLGANDSALKQLIEKYAA 112
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLK 65
G VI + AW+ QL K E + +VVDFTA+WCGPC+ IAP L+ V+FLK
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 66 VDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
VDVD + +VA + AMPTF K+G D +VG+ +++L+ +AKH A
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 23 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVE 81
Q + + +LVV+DF A+WCGPC+ I+P L EL+ + NV+ LKVDVDE + +A ++ +
Sbjct: 19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 82 AMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 114
+MPTF+FLK G V++ G+ + L+ I ++
Sbjct: 79 SMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 111
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 23 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVE 81
Q + + +LVV+DF A+WCGPC+ I+P L EL+ + NV+ LKVDVDE + +A ++ +
Sbjct: 14 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 82 AMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 114
+MPTF+FLK G V++ G+ + L+ I ++
Sbjct: 74 SMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 106
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDELKSVATD 77
+Q ++ ++VV+DF A+WCGPC+ I P +++ V F KVDVDE +A +
Sbjct: 24 DQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQE 83
Query: 78 WAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
+ AMPTF+F K G+ +D VVG+ +LQ I +H A
Sbjct: 84 VGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHSA 121
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGP + IAP + + +++ P F K+DVDEL VA V AMPT +
Sbjct: 25 KLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLF 84
Query: 90 KEGKIVDKVVGSKKEELQQTIAKH 113
K GK V KVVG+ ++Q IA +
Sbjct: 85 KNGKEVAKVVGANPAAIKQAIAAN 108
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAP 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114
+ + +PT + K G++ VG+ K +L++ + +L
Sbjct: 68 KYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 106
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGP + IAP + + A++ + F K+DVDE+ VA V +MPT +F
Sbjct: 28 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 87
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K GK V +VVG+ ++Q IA ++
Sbjct: 88 KGGKEVTRVVGANPAAIKQAIASNV 112
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGP + IAP + + A++ + F K+DVDE+ VA V +MPT +F
Sbjct: 20 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K GK V +VVG+ ++Q IA ++
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIASNV 104
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 67/94 (71%), Gaps = 2/94 (2%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT 76
A+ E L + + +LVVVDF+A+WCGPC+ I PF L++K NV+FL+VDVD+ + VA+
Sbjct: 10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVAS 67
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
+ V+ MPTF F K+G+ V + G+ KE+L+ TI
Sbjct: 68 EXEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLK 65
G VI + AW+ QL K E + +VV FTA+WCGPC+ IAP L+ V+FLK
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 66 VDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115
VDVD + +VA + AMPTF K+G D +VG+ +++L+ +AKH A
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 111
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP EL++K + +F+KVDVD+L+ A + + AMPTF+ +
Sbjct: 25 KLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAI 83
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K G+ V VVG+ +++ I K +
Sbjct: 84 KNGEKVGDVVGASIAKVEDMIKKFI 108
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
+LVVVDF A+WCGPC+ IAP EL++K + +F+KVDVD+L+ A + + AMPTF+ +
Sbjct: 34 KLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAI 92
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
K G+ V VVG+ +++ I K +
Sbjct: 93 KNGEKVGDVVGASIAKVEDMIKKFI 117
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+V+DF A+WCGPC+ + P L +L + P+V F+K DVDE +A + V AMPTF+ K+
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKD 92
Query: 92 GKIVDKVVGSKKEELQQTI 110
G+++ K++G+ L++ I
Sbjct: 93 GQLIGKIIGANPTALEKGI 111
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 25 SNETKQLVVV-DFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEA 82
S ET + VV+ DF A WCGPC+ IAP L EL +++ + L +K+DVDE + A + V +
Sbjct: 12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS 71
Query: 83 MPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+PT + LK+G++V+ VG K KE LQ+ + KHL
Sbjct: 72 IPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+VDF A+WCGPC+ IAP L ELA LK+DVDE S A + V ++PT + K+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 92 GKIVDKVVG-SKKEELQQTIAKHL 114
G+ VDKVVG KE L + + KHL
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
++VVVDF A WC PC +AP + ELA P V F K++ +E + +A + + ++PT MF
Sbjct: 24 KIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFF 83
Query: 90 KEGKIVDKVVGS-KKEELQ 107
K G++VD+++G+ +EE++
Sbjct: 84 KNGELVDQILGAVPREEIE 102
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 69/103 (66%), Gaps = 5/103 (4%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELK 72
T E + +++ KS++ V+VDF A WCGPCR IAP + ELAK+ V +KV+VDE
Sbjct: 7 TDENFEQEVLKSDKP---VLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+ A + + ++PT + K G++VD++VG++ KE L++ I KHL
Sbjct: 64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 25 SNETKQLVVV-DFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEA 82
S ET + VV+ DF A WCGP + IAP L EL +++ + L +K+DVDE + A + V +
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS 71
Query: 83 MPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+PT + LK+G++V+ VG K KE LQ+ + KHL
Sbjct: 72 IPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87
+ ++ VVDF A WC PC +AP + ELA+ P V F K++ DE +A + V ++PT +
Sbjct: 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVI 74
Query: 88 FLKEGKIVDKVVGS-KKEELQQTIAKHLA 115
F K+G+ VD+++G+ +EE++ I L
Sbjct: 75 FFKDGEPVDEIIGAVPREEIEIRIKNLLG 103
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKS 73
+E ++ ++ LV+VDF A WC PCR IAP L E+AK+ L + K+DVDE
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 74 VATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL-ATA 117
A + V ++PT + K+G+ V+ +VG++ K Q I KHL ATA
Sbjct: 65 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 110
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKS 73
+E ++ ++ LV+VDF A WC PCR IAP L E+AK+ L + K+DVDE
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 74 VATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL-ATA 117
A + V ++PT + K+G+ V+ +VG++ K Q I KHL ATA
Sbjct: 64 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPATA 109
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 90
VVVDF A WCGPC+ + P L ++ AK+ V+ KVD+D+ +A ++ V A+PT + +K
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 91 EGKIVDKVVGSKKEELQQTIAKHL 114
G +VDK VG K E+ + K L
Sbjct: 94 NGDVVDKFVGIKDEDQLEAFLKKL 117
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+VDF A+WCG C+ IAP L ELA LK+DVDE S A + V ++PT + K+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 92 GKIVDKVVG-SKKEELQQTIAKHL 114
G+ VDKVVG KE L + + KHL
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+VDF A+WCG C+ IAP L ELA LK+DVDE S A + V ++PT + K+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 92 GKIVDKVVG-SKKEELQQTIAKHL 114
G+ VDKVVG KE L + + KHL
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+VDF A+ CGPC+ IAP L ELA LK+DVDE S A + V ++PT + K+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 92 GKIVDKVVG-SKKEELQQTIAKHL 114
G+ VDKVVG KE L + + KHL
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPT 85
E+ V+VDF A WCGPCR IAP + E+A + + L +K++ DE +VA+++ + ++PT
Sbjct: 17 ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPT 76
Query: 86 FMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114
M K GK + ++G+ K + QT+ K+L
Sbjct: 77 IMVFKGGKKCETIIGAVPKATIVQTVEKYL 106
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85
E++ V+VDF A WCGPC+ IAP + ELAK+ + K++ DE +AT + + ++PT
Sbjct: 15 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 74
Query: 86 FMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114
+F K G+ + ++G+ K L +I K+L
Sbjct: 75 VLFFKNGERKESIIGAVPKSTLTDSIEKYL 104
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85
E++ V+VDF A WCGPC+ IAP + ELAK+ + K++ DE +AT + + ++PT
Sbjct: 16 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 86 FMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114
+F K G+ + ++G+ K L +I K+L
Sbjct: 76 VLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 25 SNETKQLVVV-DFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEA 82
S ET + VV+ DF A WCGP + IAP L EL +++ + L +K+DVDE + A + V +
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS 71
Query: 83 MPTFMFLKEGKIVDKVVGSK-KEELQQTIAK 112
+PT + LK+G++V+ VG K KE LQ+ + K
Sbjct: 72 IPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFL 89
LV+VDF A WCGPC+ I P L E+ K+ V KV++D+ + V ++PT M +
Sbjct: 22 LVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV 81
Query: 90 KEGKIVDKVVGS 101
++GK++DK VG+
Sbjct: 82 RDGKVIDKKVGA 93
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 21 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAV 80
Q + S +L VV FT CGPC IAP + ++ K P +FL+VDV + + A +
Sbjct: 13 QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNI 72
Query: 81 EAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 114
A PTF F + +D+ G+ L++ I +HL
Sbjct: 73 SATPTFQFFRNKVRIDQYQGADAVGLEEKIKQHL 106
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+VDF A+WCG + IAP L ELA LK+DVDE S A + V ++PT + K+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 92 GKIVDKVVG-SKKEELQQTIAKHL 114
G+ VDKVVG KE L + + KHL
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85
E++ V+VDF A WCGP + IAP + ELAK+ + K++ DE +AT + + ++PT
Sbjct: 16 ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPT 75
Query: 86 FMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115
+F K G+ + ++G+ K L +I K+L+
Sbjct: 76 VLFFKNGERKESIIGAVPKSTLTDSIEKYLS 106
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLK 90
VV+D WCGPC+ +AP +LA++ +V+FLK+D + E K++A + + +PTF LK
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 99
Query: 91 EGKIVDKVVGSKKEELQQTI 110
E +V +V G+K ++L + I
Sbjct: 100 ENSVVGEVTGAKYDKLLEAI 119
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLK 90
VV+D WCGPC+ +AP +LA++ +V+FLK+D + E K++A + + +PTF LK
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 87
Query: 91 EGKIVDKVVGSKKEELQQTI 110
E +V +V G+K ++L + I
Sbjct: 88 ENSVVGEVTGAKYDKLLEAI 107
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMF 88
K L+VV F A W C + +AELAK+LP V F+K++ + + V+ + + ++PTF+F
Sbjct: 32 KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLF 91
Query: 89 LKEGKIVDKVVGSKKEELQQTIAKHLATAS 118
K + +D++ G+ EL + + +H ++ S
Sbjct: 92 FKNSQKIDRLDGAHAPELTKKVQRHASSGS 121
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 22 LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVE 81
L + E LV+VDF A+WCGPC+ + L +A+ +V F+KVDVD+ + A + V
Sbjct: 16 LNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVS 75
Query: 82 AMPTFMFLK----EGKIVDKVVGSKKEELQQTIAK 112
++P F+K E K +D+ VG+ ++ I K
Sbjct: 76 SIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEK 110
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 1 MAAAEEGQVIGCH--------TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
+ GQV C VEA + + L +VDF A WCGPCR ++P L
Sbjct: 14 LGTPPPGQVPVCGACKTPLPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILE 73
Query: 53 ELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-SKKEELQQTI 110
ELA+ L +KV+VDE +A + V ++PT + + G V VG S + L++ +
Sbjct: 74 ELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERL 133
Query: 111 AKHL 114
+L
Sbjct: 134 RPYL 137
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 55/91 (60%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMF 88
K L+VV F A W C + +AELAK+LP V F+K++ + + V+ + + ++PTF+F
Sbjct: 38 KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLF 97
Query: 89 LKEGKIVDKVVGSKKEELQQTIAKHLATASA 119
K + +D++ G+ EL + + +H ++ +
Sbjct: 98 FKNSQKIDRLDGAHAPELTKKVQRHASSGPS 128
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 90
V+VDF A+WCGPC+ +AP L E+A ++ ++ K+DVD A ++ V ++PT + K
Sbjct: 28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 87
Query: 91 EGKIVDKVVGSK 102
+G+ V ++VG+K
Sbjct: 88 DGQPVKRIVGAK 99
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKSVATDWAVEAMPTF 86
+ + V+VDF A+WCGPC+ +AP L E+A ++ ++ K+DVD A ++ V ++PT
Sbjct: 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 87 MFLKEGKIVDKVVGSK 102
+ K+G+ V ++VG+K
Sbjct: 89 ILFKDGQPVKRIVGAK 104
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELK 72
T+ + Q++ + + V+VDF A+WCGPCR +AP L E A+ + V K++VDE
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+ + + ++PT + K G+ V +++G + KE+L+ +A L
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATD 77
+ Q++ + V+VDF A+WCGPCR +AP L E A+ + V K++VDE +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 78 WAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+ + ++PT + K G+ V +++G + KE+L+ +A L
Sbjct: 67 FGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATD 77
+ Q++ + + V+VDF A+WCGPCR +AP L E A+ + V K++VDE +
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 78 WAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+ + ++PT + K G+ V +++G + KE+L+ +A L
Sbjct: 67 FGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLK 90
VV+D WCGP + +AP +LA++ +V+FLK+D + E K++A + + +PTF LK
Sbjct: 27 VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILK 86
Query: 91 EGKIVDKVVGSKKEELQQTI 110
E +V +V G+K ++L + I
Sbjct: 87 ENSVVGEVTGAKYDKLLEAI 106
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATD 77
+ Q++ + V+VDF A+WCGPCR +AP L E A+ + V K++VDE +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 78 WAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114
+ + ++PT + K G+ V +++G + KE+L+ +A L
Sbjct: 67 FGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWA 79
EQ + L V FTA WCGPC+ I + ++A + P V F KVD D + +
Sbjct: 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCR 87
Query: 80 VEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 110
V +PTF+ + GK++ V+G+ L+Q +
Sbjct: 88 VLQLPTFIIARSGKMLGHVIGANPGMLRQKL 118
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK- 90
+VDF A WCGPC+ +AP L EL+K+ +++ KV+VD+ +A D+ ++++PT F+
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPM 114
Query: 91 EGKIVDKVVGSKKEELQQTIAKHL 114
+G+ + KE+L+ I K L
Sbjct: 115 KGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFL 89
+VDF A WCGPC+ +AP L EL+K+ +++ KV+VD+ +A D+ ++ +PT F+
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWFV 112
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + PT + K
Sbjct: 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLLLFK 83
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLATA 117
G++ VG+ K +L++ + +LA A
Sbjct: 84 NGEVAATKVGALSKGQLKEFLDANLAAA 111
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 33 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 92
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLATAS 118
G++ VG+ K +L++ + +LA ++
Sbjct: 93 NGEVAATKVGALSKGQLKEFLDANLAGSA 121
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A++ L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 90
V+VDF A+WCGP + +AP L E+A ++ ++ K+DVD A ++ V ++PT + K
Sbjct: 30 VLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFK 89
Query: 91 EGKIVDKVVGSK 102
+G+ V ++VG+K
Sbjct: 90 DGQPVKRIVGAK 101
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + ++PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKS 73
+ A E L K + V+DF A WCGPCR AP AE A++ V F+KV+ + +
Sbjct: 41 INATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA 100
Query: 74 VATDWAVEAMPTFMFLKEGKIVDKVVGS 101
++T + + ++PT + GK +D + G+
Sbjct: 101 LSTRFRIRSIPTIXLYRNGKXIDXLNGA 128
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDW 78
E + +LV+VD A WC PC P ++A+K +F +++VDE + +A +
Sbjct: 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKY 71
Query: 79 AVEAMPTFMFLKEGKIVDKVVGSKKEE-LQQTIAKHL 114
+V +PT + G++VD +VG+ E+ L+ T+ K+L
Sbjct: 72 SVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G + VG+ K +L++ + +LA
Sbjct: 83 NGDVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAACKVGALSKGQLKEFLDANLA 108
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L ++A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L+ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKCFLDANLA 108
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLK 90
V+VDF A+WCGPCR IAP L +A + + + +K+++DE A + V ++PT +
Sbjct: 26 VLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQ 85
Query: 91 EGKIVDKVVGSK 102
G++ +VG+K
Sbjct: 86 GGEVAKTIVGAK 97
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS 101
G++ VG+
Sbjct: 83 NGEVAATKVGA 93
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85
E + +VDF A WCGPC+ +AP L ELAK+ ++ KVD ++ + +A + + ++P+
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 86 FMFLK-EGK 93
+F+ EGK
Sbjct: 96 ILFIPMEGK 104
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IA L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGPC+ IAP L E+A + L + K+++D+ A + +PT + K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGP + IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 43 ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 102
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 103 NGEVAATKVGALSKGQLKEFLDANLA 128
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCGP + IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WCG C+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 32 VVVDFTASWCG-PCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFL 89
++VDF A WCG PC+ IAP L E+A + L + K+++D+ A + + +PT +
Sbjct: 23 ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82
Query: 90 KEGKIVDKVVGS-KKEELQQTIAKHLA 115
K G++ VG+ K +L++ + +LA
Sbjct: 83 KNGEVAATKVGALSKGQLKEFLDANLA 109
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 22 LQKSNETKQLVVVDFTASWCGPCRFIAP-FLAELAKKLPNVLFLKVDVDELKSVATDWAV 80
L ++ ++VDF A WCGPCR +AP F A A V K+D +VA +
Sbjct: 57 LARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRI 116
Query: 81 EAMPTFMFLKEGKIVDKVVGSK 102
+ +P F+ +G+ + + G++
Sbjct: 117 QGIPAFILFHKGRELARAAGAR 138
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WC C+ IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 16/100 (16%)
Query: 32 VVVDFTASWCGP--------------CRFIAPFLAELAKKLPNVLFL-KVDVDELKSVAT 76
++VDF A WCGP C+ IAP L E+A + L + K+++D+ A
Sbjct: 24 ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP 83
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115
+ + +PT + K G++ VG+ K +L++ + +LA
Sbjct: 84 KYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 123
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLK 90
++VDF A WC + IAP L E+A + L + K+++D+ A + + +PT + K
Sbjct: 23 ILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHLA 115
G++ VG+ K +L++ + +LA
Sbjct: 83 NGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 22 LQKSNETKQL-----VVVDFTASWCGPCRFIAPFLAELAKKL----PNVLFLKVDVDELK 72
L+KSN + L ++V+F A WCG C+ +AP A+ A KL + KVD E
Sbjct: 12 LRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES 71
Query: 73 SVATDWAVEAMPTFMFLKEG 92
+A + V PT F + G
Sbjct: 72 DLAQQYGVRGYPTIKFFRNG 91
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK----LPNVLFLKVDVD 69
TV A E + + + F A WCG C+ +AP EL+KK L V +VD
Sbjct: 8 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 67
Query: 70 ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102
+++ + ++V PT + + GK V + G +
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 100
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK----LPNVLFLKVDVD 69
TV A E + + + F A WCG C+ +AP EL+KK L V +VD
Sbjct: 6 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 65
Query: 70 ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102
+++ + ++V PT + + GK V + G +
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 98
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 30 QLVVVDFTASWCGPCRFIAPFL----AELAKKLPNVLFLKVDVDELKSVATDWAVEAMPT 85
+++V+F A WCG C+ +AP EL+K+ P + KVD E +A + V PT
Sbjct: 25 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPT 84
Query: 86 FMFLKEGKIVD 96
++G+ D
Sbjct: 85 LKIFRKGRPFD 95
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK----LPNVLFLKVDVD 69
TV A E + + + F A WCG C+ +AP EL+KK L V +VD
Sbjct: 1 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 70 ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102
+++ + ++V PT + + GK V + G +
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGR 93
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFM 87
+Q V+V F ASWCGPC+ ++P + A + L +K+++D + + VE +P
Sbjct: 25 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALR 84
Query: 88 FLKEGKIVDKVVGS-KKEELQQTIAKHL 114
+K +I+D G K++L + HL
Sbjct: 85 LVKGEQILDSTEGVISKDKLLSFLDTHL 112
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKL----PNVLFLKVDVDELKSVATDWAVEAMP 84
K V+++F A WCG C+ AP ++A L P + K+D +A+ + V P
Sbjct: 34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYP 93
Query: 85 TFMFLKEGKIVDKVVGSKKEEL 106
T LK+G+ VD +EE+
Sbjct: 94 TIKILKKGQAVDYDGSRTQEEI 115
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 25 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL---PNVLFLKVDVDELKSVATDWAVE 81
+NE K V+++F A WCG C+ + P EL +KL PN++ K+D V + + V
Sbjct: 42 NNENKD-VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVR 99
Query: 82 AMPTFMF 88
PT F
Sbjct: 100 GFPTIYF 106
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 29 KQLVVVDFTASWCGPCRFIAPFLAELAK----KLPNVLFLKVDVDELKSVATDWAVEAMP 84
K V+++F A WCG C+ AP ++A K P + K+D +A+ + V P
Sbjct: 32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYP 91
Query: 85 TFMFLKEGKIVDKVVGSKKEEL 106
T LK+G+ VD +EE+
Sbjct: 92 TIKILKKGQAVDYEGSRTQEEI 113
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 30 QLVVVDFTASWCGPCRFIAPFL----AELAKKLPNVLFLKVDVDELKSVATDWAVEAMPT 85
+++V+F A WCG C+ +AP EL+K+ P + KVD +A + V PT
Sbjct: 148 DIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPT 207
Query: 86 FMFLKEGKIVD 96
++G+ D
Sbjct: 208 LKIFRKGRPYD 218
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDELKSVATDWAVEAMPTFM 87
+L+V+ F SW PC+ + ++ + N V FL +D DE ++ + + A+P F+
Sbjct: 22 KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI 81
Query: 88 FLKEGKIVDKVVGSKKEE 105
+ +G I+ ++ G+ +E
Sbjct: 82 IIHKGTILKELSGADPKE 99
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 25 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL---PNVLFLKVDVDELKSVATDWAVE 81
+NE K V+++F A WCG C+ + P EL +KL PN++ K+D V + + V
Sbjct: 367 NNENKD-VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVR 424
Query: 82 AMPTFMF 88
PT F
Sbjct: 425 GFPTIYF 431
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFL 89
L++V+F A WCG + +AP A +L ++ L KVD + + V PT
Sbjct: 23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 90 KEGK 93
++G+
Sbjct: 83 RDGE 86
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 18 WNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVAT 76
W++Q++ S K+ VVV F + C C+ P+ E AK+ + +F ++++ A
Sbjct: 16 WSQQVEDS---KKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAE 72
Query: 77 DWAVEAMPTFMFLKEGKIVDKVVG 100
+ V+ PTF F G+ V + VG
Sbjct: 73 KYGVQGTPTFKFFCHGRPVWEQVG 96
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAP--FLAELAKKLPNVLF--LKVDVDELK 72
++ E L+++ +L+ VD +WCGPC+ ++ F L N F LK+D+++ +
Sbjct: 15 SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE 74
Query: 73 SV--ATDWAVEAMPTFMFLK-EGKIVDKVVGSK 102
V + V A PT +F+ G++V ++VG++
Sbjct: 75 GVELRKKYGVHAYPTLLFINSSGEVVYRLVGAE 107
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMP 84
N ++V+ F A WC C + + +L K + LKVD+D+ +S+A ++V+++P
Sbjct: 39 NMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLP 98
Query: 85 TFMFLKEGKIV---DKVVGSKKEELQQTIAKH 113
T + LK ++ D V S +L I KH
Sbjct: 99 TIILLKNKTMLARKDHFVSS--NDLIALIKKH 128
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFL 89
L++V+F A WCG C+ +AP A +L ++ L KVD + + V PT
Sbjct: 23 LMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 90 KEGKIVDKVVGSKKEELQQTIAKHL 114
++G+ G + + I HL
Sbjct: 83 RDGEEAGAYDGPRTAD---GIVSHL 104
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLK 90
+++ FT SWC PC+ + P E+A ++ ++ F +D ++ + + + +P+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 91 EGKIVDKVVGS-KKEELQQTIAKHL 114
+G I + G+ K +L+ I ++
Sbjct: 80 DGMIREVFSGTMNKSDLRYWINNNI 104
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKL---PNVLFLKVDVDELKSVATDWAVEAM 83
+ K+ V+++F A WCG C+ + P L KK +++ K+D + VE
Sbjct: 23 DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGF 82
Query: 84 PTFMFLKEG 92
PT F G
Sbjct: 83 PTIYFAPSG 91
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN----VLFLKVDV--DELKSVATDWA 79
N+ K+ V+V + A WCG C+ +AP ELA N VL K+D ++++ V
Sbjct: 373 NDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGV----V 428
Query: 80 VEAMPTFMFLKEGKIVDKVV--GSK 102
+E PT + GK + VV GS+
Sbjct: 429 IEGYPTIVLYPGGKKSESVVYQGSR 453
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 3 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PN 60
A E+ V+ T +++NE +Q + LV+ +F A WCG C+ +AP + A+ L N
Sbjct: 10 APEDSAVVKLAT-DSFNEYIQ----SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64
Query: 61 VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKV 98
+ ++D E + + + + P+ K + + +
Sbjct: 65 ITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSI 102
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKE 91
+V F+ C C+ + P L EL F VDV+E K++ ++++ +P ++ K+
Sbjct: 26 LVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKD 85
Query: 92 GKIVDKVVGS-KKEELQQTIAKHL 114
G+ K G + +E++Q IA L
Sbjct: 86 GEYKGKXAGDVEDDEVEQXIADVL 109
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL---FLKVDVDE 70
T +++++ + +N T +V+F A WCG C+ ++ + AK+L V+ + D+++
Sbjct: 23 TPKSFDKAIHNTNYTS---LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK 79
Query: 71 LKSVATDWAVEAMPTFMFLKEGKI 94
K++ + V PT M + KI
Sbjct: 80 NKALCAKYDVNGFPTLMVFRPPKI 103
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 25/95 (26%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK-----------------------KLPNVLFLKV 66
++ +V+ ASWC PC AP L EL K + N F +V
Sbjct: 43 KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNP-FGRV 101
Query: 67 DVDELKSVATDWAVEAMP-TFMFLKEGKIVDKVVG 100
VD + +W V +P TF+ +EG IV K+VG
Sbjct: 102 GVDANGRASIEWGVYGVPETFVVGREGTIVYKLVG 136
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL-- 89
+V+ F A WC PC I + V + +DVD + ++A+PTF F
Sbjct: 43 IVIKFGAVWCKPCNKIKEYFKNQLNYYY-VTLVDIDVDIHPKLNDQHNIKALPTFEFYFN 101
Query: 90 --KEGKIVDKVVGSKKEELQQTIAKH 113
E +V V G+ + ++++ K+
Sbjct: 102 LNNEWVLVHTVEGANQNDIEKAFQKY 127
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 28/119 (23%)
Query: 25 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-------DELK----- 72
S++T +V +DF ASWCGPCR P+ + K F V V D K
Sbjct: 24 SDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQV 83
Query: 73 ----SVATD--------WAVEAMPT-FMFLKEGKIVDKVVGSK---KEELQQTIAKHLA 115
+VA D + V+ PT F+ + GK++ + VG + KE L+Q I L
Sbjct: 84 PAEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG 142
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVEA------MP 84
+V+F A+W C+ AP A+L+ K + F KVDV V+T + V +P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 85 TFMFLKEGK 93
T + + GK
Sbjct: 90 TLILFQGGK 98
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85
VVDF A WCGPC+ AP LA+ + V KVD ++A P+
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPS 78
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLK-VDVDELKSVATDWAVEAMPT 85
++ L +V+F A WCG C+ + P + A L +V+ + V+ D+ +S+ + V+ PT
Sbjct: 33 QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPT 92
Query: 86 FMFLKEGK 93
K
Sbjct: 93 IKIFGANK 100
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPF---LAELAKKLPNVLFLKVD--VDELKSVATDWAVE 81
+ K+ V V+F A WCG C+ +AP L E K N++ K+D +E+++V V
Sbjct: 265 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV----KVH 320
Query: 82 AMPTFMFL 89
+ PT F
Sbjct: 321 SFPTLKFF 328
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPF---LAELAKKLPNVLFLKVD--VDELKSVATDWAVE 81
+ K+ V V+F A WCG C+ +AP L E K N++ K+D +E+++V V
Sbjct: 23 DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV----KVH 78
Query: 82 AMPTFMFL 89
+ PT F
Sbjct: 79 SFPTLKFF 86
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 26/92 (28%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLK-------------VDVDELKSV 74
+ + +D A+WCGPCR P L EL +K ++ F+ V D+LK +
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGI 90
Query: 75 ----ATD------WAVEAMPTFMFL-KEGKIV 95
TD + + +P F+ L ++GKI+
Sbjct: 91 QLHMGTDRTFMDAYLINGIPRFILLDRDGKII 122
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 31 LVVVDFTASWCGPCRFIAPFLAE----LAKKLPN---VLFLKVDVDELKSVATDWAVEAM 83
+ +V+F A WC + + P E + ++ PN V+F +VD D+ +A + +
Sbjct: 24 VALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY 83
Query: 84 PTFMFLKEG 92
PT + G
Sbjct: 84 PTLKLFRNG 92
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 14 TVEAWNEQLQKSNETK-QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLF--LKVDVDE 70
T+ N ++ K ++ K Q+V+V+F A+WC PCR P L F L V +DE
Sbjct: 12 TLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDE 71
Query: 71 LKSVATD-----------------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
VA + + +P TF+ + G I+ KVVG+ + +
Sbjct: 72 GGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAXEWDH 131
Query: 107 QQTIA 111
+ IA
Sbjct: 132 PEVIA 136
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 44 CRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102
C + P L LA + L K+D D + +A + + A+PT + G+ VD G +
Sbjct: 41 CLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQ 100
Query: 103 KEE 105
EE
Sbjct: 101 PEE 103
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 22 LQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKK 57
L KS E + V + F+ASWC PCR P LAE +K
Sbjct: 15 LSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK 56
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 1 MAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-- 58
+A E+G++I T E + + LQ ++ + C C P L + +K++
Sbjct: 10 LAVLEDGRLIYI-TPEEFRQLLQGD------AILAVYSKTCPHCHRDWPQLIQASKEVDV 62
Query: 59 PNVLFL---KVDVDELKSVATDW---AVEAMPTFMFLKEGKIVDKVVGS 101
P V+F+ + EL + + VE PT +F KEG+IVDK+VG+
Sbjct: 63 PIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGA 111
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 44 CRFIAPFLAELAKKLPNVLFL-KVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102
C + P L LA + L K+D D + +A + + A+PT + G+ VD G +
Sbjct: 41 CLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQ 100
Query: 103 KEE 105
EE
Sbjct: 101 PEE 103
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAP---FLAELAKKLPNVLFLKVDVDE 70
T E W E L+ +++F A WC C+ + P AE + L V KVDV E
Sbjct: 13 TDENWRELLEGD------WMIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTE 65
Query: 71 LKSVATDWAVEAMPTFMFLKEGKI 94
++ + + A+PT K+G+
Sbjct: 66 QPGLSGRFIINALPTIYHCKDGEF 89
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL 51
+Q+ S+ ++V++ FTASWCG CR PF+
Sbjct: 23 GKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFI 55
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEG 92
+V F + C C+ + L + + P V VD + + + E +PT +F+++G
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG 82
Query: 93 KIVDKVVG-SKKEELQQTIA 111
K+ G ELQ A
Sbjct: 83 KVAKVFSGIMNPRELQALYA 102
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL 58
NE L+ K ++ F+A WC PCR P LA++ +L
Sbjct: 20 NEALKD----KDIIGFYFSAHWCPPCRGFTPILADMYSEL 55
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL 58
+LV F+ASWC PCR P L E K
Sbjct: 29 KLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL 58
+LV F+ASWC PCR P L E K
Sbjct: 29 KLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL 58
+LV F+ASWC PCR P L E K
Sbjct: 29 KLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL 58
+LV F+ASWC PCR P L E K
Sbjct: 28 KLVFFYFSASWCPPCRGFTPQLIEFYDKF 56
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +WC PC+ P++A K K V + V+V E
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKK 57
+ + V F+ASWC PCR P L E +K
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 25 SNETKQL-VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAM 83
+N K L VV+ S C + L+ LA+K P F+K V+ S + +
Sbjct: 25 TNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN---SCIEHYHDNCL 81
Query: 84 PTFMFLKEGKIVDKVVG 100
PT K G+I K +G
Sbjct: 82 PTIFVYKNGQIEGKFIG 98
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +WC PC+ P++A K K V + V+V E
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 25 SNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVD 69
S+ + ++V+ A+WC PCR P L EL KL PN + +++D
Sbjct: 56 SDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91
V++ S C + L+ LA+K P F+K V+ S + +PT K
Sbjct: 26 VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN---SCIQHYHDNCLPTIFVYKN 82
Query: 92 GKIVDKVVG 100
G+I K +G
Sbjct: 83 GQIEAKFIG 91
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-----NVLFLKVDVDELKSVATDWAVE 81
+++ + +V+F A WCG C+ + P A A ++ V VD + +A+ + +
Sbjct: 23 DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIR 82
Query: 82 AMPTFMFLKEGKI-VDKVVGSKKEEL 106
PT ++G+ VD G + ++
Sbjct: 83 GFPTIKIFQKGESPVDYDGGRTRSDI 108
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 22/94 (23%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDV------------------- 68
++V+V+F ASWC CR P L K P +++ L V+V
Sbjct: 42 KIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLS 101
Query: 69 DELKSVATDWAVEAMP-TFMFLKEGKIVDKVVGS 101
D V + +P TF+ ++G I +V G
Sbjct: 102 DATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGG 135
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 26 NETKQLVVVDFTASWCGPCRFIAPFLAELA 55
++TK V+++F A WCG C+ +AP EL
Sbjct: 23 DDTKD-VLIEFYAPWCGHCKALAPKYEELG 51
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 34 VDFTASWCGPCRFIAPFLAELAKKL----PNVLFLKVDVDE--LKSVATDWAVEAMPTFM 87
V+F ASWCG C AP LA+ + P + +D E +V D+ + PT
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 88 FL 89
F
Sbjct: 95 FF 96
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK 56
+ V F+ASWC PCR P L + K
Sbjct: 30 KTVFFYFSASWCPPCRAFTPQLIDFYK 56
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK 56
+ V F+ASWC PCR P L + K
Sbjct: 32 KTVFFYFSASWCPPCRAFTPQLIDFYK 58
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK 56
+ V F+ASWC PCR P L + K
Sbjct: 32 KTVFFYFSASWCPPCRAFTPQLIDFYK 58
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK 56
+ V F+ASWC PCR P L + K
Sbjct: 29 KTVFFYFSASWCPPCRAFTPQLIDFYK 55
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLK-VDVDELKSVATDWAVEAMPTF 86
+ +L V+F + C C +AP E AK++ +L + V+ + + + V + P+
Sbjct: 113 SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSL 172
Query: 87 MFLKEGKIVDKVVGSKKEE 105
+ G K G + +E
Sbjct: 173 FIFRSGMAAVKYNGDRSKE 191
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL 58
+LV F+ASWC P R P L E K
Sbjct: 29 KLVFFYFSASWCPPARGFTPQLIEFYDKF 57
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELK 72
T + +NE++ + K VVDF A W GP + AP LA+ + V KVD
Sbjct: 663 TPQTFNEKVLQG---KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP 719
Query: 73 SVATDWAVEAMPT 85
++A P+
Sbjct: 720 QTCQKAGIKAYPS 732
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELK 72
T +NE L K + ++ +VDF + W P + + P +A+ L ++ + VD +
Sbjct: 549 TPSTFNE-LVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYH 607
Query: 73 SVATDWAVEAMPTFMF 88
S T V+ P F
Sbjct: 608 SFCTQENVQRYPEIRF 623
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 18 WNEQLQKSNETKQLVVVDFTASWCGPCR----FIA--PFLAELAKKLPNVLFLKVDVDEL 71
+ E L + ++V+V F + C C+ F+ P ++ L + V + VD E
Sbjct: 8 YPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEG 67
Query: 72 KSVATDWAVEAMPTFMFL--KEG--KIVDKVVGSKK-----EELQQTIAK 112
+ +A + V PTF+FL K G + V ++ GS+ +EL+Q K
Sbjct: 68 QELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVK 117
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67
++ ++ V++F +C C P L +L K LP+ +L+ +
Sbjct: 21 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTE 61
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67
++ ++ V++F +C C P L +L K LP+ +L+ +
Sbjct: 20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTE 60
>pdb|4DA9|A Chain A, Crystal Structure Of Putative Short-Chain
DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021
pdb|4DA9|B Chain B, Crystal Structure Of Putative Short-Chain
DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021
pdb|4DA9|C Chain C, Crystal Structure Of Putative Short-Chain
DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021
pdb|4DA9|D Chain D, Crystal Structure Of Putative Short-Chain
DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021
Length = 280
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS 73
D + G +AP +AEL+ V+FL+ D+ +L S
Sbjct: 55 DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSS 93
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVD-----------------------VDELK 72
F A WC C+ AP + ++A P V F+ V D
Sbjct: 46 FWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG 105
Query: 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTI 110
SV ++ V P + F+ VD V G ++EL + +
Sbjct: 106 SVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV 144
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVD-----------------------VDELK 72
F A WC C+ AP + ++A P V F+ V D
Sbjct: 32 FWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG 91
Query: 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTI 110
SV ++ V P + F+ VD V G ++EL + +
Sbjct: 92 SVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV 130
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +WC C+ P++A K K V + V+V E
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|3LWA|A Chain A, The Crystal Structure Of A Secreted Thiol-Disulfide
Isomerase From Corynebacterium Glutamicum To 1.75a
Length = 183
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCR 45
IG ++ Q+ S+ Q+V+++ WC PCR
Sbjct: 40 IGGDSLXEEGTQINLSDFENQVVILNAWGQWCAPCR 75
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
Length = 519
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 34 VDFTASWCGPCRFIAPFLAELAKKLP------NVLFLKVDVDELKSVATDWAVEAMPTFM 87
V+F ASWCG AP ELA + N+ L + +V ++ + PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 88 FLK 90
F +
Sbjct: 95 FFQ 97
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +WC P + P++A K K V + V+V E
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +W PC+ P++A K K V + V+V E
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 76
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 77 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 25/112 (22%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVLFLKVDVDE------- 70
++++ S+ + V ++F +WC C+ P++A K K V + V+V E
Sbjct: 14 KRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN 73
Query: 71 -LKSVATD--------------WAVEAMP-TFMFLKEGKIVDKVVGSKKEEL 106
+KS + + V +P TF+ EGK+V V G+ E +
Sbjct: 74 FMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 125
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 33 VVDFTASWCGPCRFIAPFLAELAK 56
+V+ A+WCGPCR P ++ K
Sbjct: 28 IVNLWATWCGPCRKEXPAXSKWYK 51
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 189 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 227
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 190 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 228
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 249 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 287
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 214 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 214 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLA 52
TV + L++ + K ++V TAS P +++APF A
Sbjct: 214 TVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 33 VVDFTASWCGPCR 45
+V+F A+WC PCR
Sbjct: 38 IVNFFATWCPPCR 50
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89
Q ++ F SWC PC+ P P+ V V+ + S VE F+
Sbjct: 35 QKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVED-----FI 89
Query: 90 KEGKIVDKVVGSKKEEL 106
K K+ +V K EL
Sbjct: 90 KANKLTFPIVLDSKGEL 106
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 30 QLVVVDFTASWCGPCRFIAPFLAELAK 56
+ V F+ASWC P R P L + K
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQLIDFYK 55
>pdb|1R5Z|A Chain A, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|B Chain B, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|C Chain C, Crystal Structure Of Subunit C Of V-Atpase
pdb|1V9M|A Chain A, Crystal Structure Of The C Subunit Of V-Type Atpase From
Thermus Thermophilus
pdb|3J0J|M Chain M, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 323
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 58 LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKV 98
L + L L+VD + L++ P FLK G+ VD+V
Sbjct: 188 LRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRV 228
>pdb|1PQN|A Chain A, Dominant Negative Human Hdim1 (Hdim1 1-128)
Length = 127
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 13 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDE 70
H W +E ++VV+ F W C + L +A+K+ N V++L VD+ E
Sbjct: 6 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL-VDITE 64
Query: 71 LKSVATDWAVEAMPTFMFLKEGK 93
+ + + T MF K
Sbjct: 65 VPDFNKMYELYDPCTVMFFFRNK 87
>pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd
pdb|1SYX|A Chain A, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|C Chain C, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|E Chain E, The Crystal Structure Of A Binary U5 Snrnp Complex
Length = 142
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 13 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDE 70
H W +E ++VV+ F W C + L +A+K+ N V++L VD+ E
Sbjct: 7 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL-VDITE 65
Query: 71 LKSVATDWAVEAMPTFMFLKEGK 93
+ + + T MF K
Sbjct: 66 VPDFNKMYELYDPCTVMFFFRNK 88
>pdb|3MCS|A Chain A, Crystal Structure Of Putative Monooxygenase (Fn1347)
From Fusobacterium Nucleatum Subsp. Nucleatum Atcc
25586 At 2.55 A Resolution
pdb|3MCS|B Chain B, Crystal Structure Of Putative Monooxygenase (Fn1347)
From Fusobacterium Nucleatum Subsp. Nucleatum Atcc
25586 At 2.55 A Resolution
Length = 219
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 1 MAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTA 38
AA +E + VE +N+ L SN TK DF A
Sbjct: 45 FAATDERDKTTSYIVEIYNDYLAFSNHTKNQASKDFKA 82
>pdb|3JQ1|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001297730.1) From Bacteroides Vulgatus Atcc 8482 At
1.55 A Resolution
pdb|3JQ1|B Chain B, Crystal Structure Of Susd Superfamily Protein
(Yp_001297730.1) From Bacteroides Vulgatus Atcc 8482 At
1.55 A Resolution
Length = 481
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPF-LAELAKKLPN 60
N QK E K+ DF S G C FI F L +LAK+ +
Sbjct: 87 NSIXQKLEEKKEQFSTDFQNSVKGECLFIRGFYLFQLAKEFKD 129
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL 58
++++ S+ + V ++F +WC PC+ P+ A K
Sbjct: 17 KRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHF 55
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87
K ++VV GP + + P + E+ KK P + + V + LK D V+ +
Sbjct: 122 NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI-VPISALKGANLDELVKTI--LK 178
Query: 88 FLKEG 92
+L EG
Sbjct: 179 YLPEG 183
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87
K ++VV GP + + P + E+ KK P + + V + LK D V+ +
Sbjct: 121 NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI-VPISALKGANLDELVKTI--LK 177
Query: 88 FLKEG 92
+L EG
Sbjct: 178 YLPEG 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,275,495
Number of Sequences: 62578
Number of extensions: 113158
Number of successful extensions: 575
Number of sequences better than 100.0: 207
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 214
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)