Query 033426
Match_columns 119
No_of_seqs 119 out of 1082
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 2E-27 4.4E-32 142.7 11.5 105 8-115 43-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 2.9E-26 6.2E-31 132.8 12.7 102 12-113 4-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 2.1E-25 4.5E-30 129.3 13.8 97 14-112 2-101 (103)
4 PF00085 Thioredoxin: Thioredo 99.9 8.5E-25 1.8E-29 126.2 14.7 97 14-113 5-103 (103)
5 cd02948 TRX_NDPK TRX domain, T 99.9 4.3E-25 9.3E-30 127.8 13.4 98 11-113 3-102 (102)
6 PHA02278 thioredoxin-like prot 99.9 3E-25 6.5E-30 128.3 12.6 93 13-109 2-100 (103)
7 cd02954 DIM1 Dim1 family; Dim1 99.9 3E-25 6.4E-30 129.5 11.1 85 15-101 2-87 (114)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.8E-24 3.9E-29 126.9 12.6 104 4-109 6-112 (113)
9 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.9E-24 4.1E-29 127.1 12.2 92 6-101 3-94 (113)
10 PTZ00051 thioredoxin; Provisio 99.9 3.9E-24 8.4E-29 122.8 12.8 97 8-108 1-97 (98)
11 cd02963 TRX_DnaJ TRX domain, D 99.9 3E-24 6.5E-29 126.0 11.7 99 14-113 10-111 (111)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.9E-24 8.4E-29 124.1 11.5 99 8-110 2-104 (104)
13 cd02999 PDI_a_ERp44_like PDIa 99.9 3.3E-24 7.2E-29 123.6 11.1 91 17-110 8-100 (100)
14 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4E-24 8.7E-29 123.5 11.4 97 8-109 2-100 (101)
15 PRK09381 trxA thioredoxin; Pro 99.9 1.6E-23 3.4E-28 122.5 13.8 105 6-114 2-108 (109)
16 cd02957 Phd_like Phosducin (Ph 99.9 1.1E-23 2.5E-28 123.9 13.0 93 6-101 3-95 (113)
17 COG3118 Thioredoxin domain-con 99.9 2.5E-24 5.4E-29 141.6 11.1 109 6-116 22-132 (304)
18 cd02956 ybbN ybbN protein fami 99.9 9.2E-24 2E-28 120.8 12.0 93 17-111 2-96 (96)
19 KOG0908 Thioredoxin-like prote 99.9 4.7E-24 1E-28 136.9 11.2 110 8-119 2-111 (288)
20 PRK10996 thioredoxin 2; Provis 99.9 3.2E-23 6.9E-28 126.0 14.2 104 6-114 34-139 (139)
21 PLN00410 U5 snRNP protein, DIM 99.9 2.8E-23 6.1E-28 125.4 13.6 108 8-117 4-123 (142)
22 cd02984 TRX_PICOT TRX domain, 99.9 2.6E-23 5.7E-28 119.1 12.5 94 15-110 2-96 (97)
23 cd03065 PDI_b_Calsequestrin_N 99.9 1.9E-23 4.1E-28 123.4 11.8 103 7-114 9-119 (120)
24 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.7E-23 8E-28 120.8 11.7 99 7-110 1-108 (108)
25 cd02994 PDI_a_TMX PDIa family, 99.9 9.7E-23 2.1E-27 117.6 12.3 98 7-112 1-101 (101)
26 cd02987 Phd_like_Phd Phosducin 99.9 1.1E-22 2.5E-27 127.6 13.4 95 5-101 60-154 (175)
27 PTZ00443 Thioredoxin domain-co 99.9 2.5E-22 5.3E-27 130.1 14.6 111 6-117 29-142 (224)
28 cd02965 HyaE HyaE family; HyaE 99.9 1.5E-22 3.3E-27 117.5 11.3 94 9-107 12-109 (111)
29 TIGR01068 thioredoxin thioredo 99.9 4.7E-22 1E-26 114.2 12.7 97 15-114 3-101 (101)
30 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.9E-22 4.2E-27 117.7 10.9 99 9-111 2-109 (109)
31 cd03005 PDI_a_ERp46 PDIa famil 99.9 2.6E-22 5.7E-27 115.8 11.3 96 9-110 2-102 (102)
32 cd02950 TxlA TRX-like protein 99.9 9.4E-22 2E-26 119.9 12.5 96 17-116 12-112 (142)
33 cd02986 DLP Dim1 family, Dim1- 99.9 2.1E-21 4.6E-26 112.7 13.0 98 15-114 2-111 (114)
34 cd02962 TMX2 TMX2 family; comp 99.9 2.6E-21 5.6E-26 118.7 13.3 92 6-100 27-126 (152)
35 cd02949 TRX_NTR TRX domain, no 99.9 2.6E-21 5.7E-26 110.9 12.4 91 18-111 5-97 (97)
36 cd02997 PDI_a_PDIR PDIa family 99.9 2.1E-21 4.5E-26 112.3 11.8 97 9-110 2-104 (104)
37 TIGR01126 pdi_dom protein disu 99.9 1.5E-21 3.3E-26 112.4 11.1 96 15-114 3-102 (102)
38 cd02975 PfPDO_like_N Pyrococcu 99.9 4.3E-21 9.4E-26 112.9 12.2 89 27-115 20-111 (113)
39 cd03001 PDI_a_P5 PDIa family, 99.9 5E-21 1.1E-25 110.6 12.1 98 9-110 2-102 (103)
40 cd02953 DsbDgamma DsbD gamma f 99.9 1.1E-21 2.4E-26 113.8 9.2 92 16-111 2-104 (104)
41 cd02988 Phd_like_VIAF Phosduci 99.9 1.5E-20 3.2E-25 119.5 13.2 103 5-112 80-190 (192)
42 TIGR01295 PedC_BrcD bacterioci 99.9 2E-20 4.4E-25 111.3 12.4 96 10-111 9-121 (122)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 9E-21 1.9E-25 109.6 10.5 98 8-110 1-104 (104)
44 cd03000 PDI_a_TMX3 PDIa family 99.9 1.2E-20 2.5E-25 109.5 10.9 85 28-113 14-103 (104)
45 PTZ00062 glutaredoxin; Provisi 99.9 1.4E-20 3E-25 120.2 12.0 95 12-117 3-97 (204)
46 cd02998 PDI_a_ERp38 PDIa famil 99.9 1.3E-20 2.7E-25 109.1 10.2 98 9-110 2-105 (105)
47 cd02947 TRX_family TRX family; 99.8 5.1E-20 1.1E-24 103.6 11.7 90 17-110 2-92 (93)
48 cd02961 PDI_a_family Protein D 99.8 3E-20 6.5E-25 106.3 10.1 92 15-110 5-101 (101)
49 cd02993 PDI_a_APS_reductase PD 99.8 5.2E-20 1.1E-24 107.7 11.1 101 8-110 2-109 (109)
50 cd02951 SoxW SoxW family; SoxW 99.8 6.3E-20 1.4E-24 109.6 11.6 93 24-116 8-121 (125)
51 KOG0190 Protein disulfide isom 99.8 1.9E-20 4.1E-25 131.5 9.7 108 6-118 24-136 (493)
52 PTZ00102 disulphide isomerase; 99.8 8.1E-19 1.7E-23 124.9 13.4 105 7-117 32-141 (477)
53 cd02952 TRP14_like Human TRX-r 99.8 8.3E-19 1.8E-23 103.4 10.7 98 11-110 5-118 (119)
54 cd02992 PDI_a_QSOX PDIa family 99.8 4.1E-19 8.9E-24 104.6 8.6 82 8-93 2-89 (114)
55 TIGR01130 ER_PDI_fam protein d 99.8 1.5E-18 3.2E-23 122.8 12.5 104 8-116 2-111 (462)
56 TIGR00424 APS_reduc 5'-adenyly 99.8 2.4E-18 5.2E-23 121.2 13.0 107 5-113 349-462 (463)
57 PLN02309 5'-adenylylsulfate re 99.8 2.9E-18 6.2E-23 120.7 13.1 107 5-113 343-456 (457)
58 PTZ00102 disulphide isomerase; 99.8 2.4E-18 5.3E-23 122.4 12.2 107 6-116 356-467 (477)
59 PRK00293 dipZ thiol:disulfide 99.8 3E-18 6.5E-23 124.2 12.3 107 8-114 453-570 (571)
60 TIGR00411 redox_disulf_1 small 99.8 9.1E-18 2E-22 93.2 10.3 79 32-114 2-82 (82)
61 cd02959 ERp19 Endoplasmic reti 99.8 1.3E-18 2.9E-23 102.8 6.5 99 17-115 7-114 (117)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7E-18 1.5E-22 98.9 8.8 97 9-113 3-115 (116)
63 TIGR02187 GlrX_arch Glutaredox 99.8 3.5E-17 7.6E-22 106.0 12.4 88 28-115 18-112 (215)
64 cd02982 PDI_b'_family Protein 99.8 1E-17 2.3E-22 96.7 8.8 86 28-113 11-102 (103)
65 PRK15412 thiol:disulfide inter 99.7 8.8E-17 1.9E-21 102.0 11.8 89 27-117 66-179 (185)
66 PF13098 Thioredoxin_2: Thiore 99.7 3.6E-17 7.7E-22 95.8 8.1 85 26-110 2-112 (112)
67 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.3E-16 2.9E-21 95.4 8.8 84 22-106 18-126 (127)
68 PRK14018 trifunctional thiored 99.7 2.1E-16 4.5E-21 112.7 11.0 87 27-113 54-172 (521)
69 TIGR02187 GlrX_arch Glutaredox 99.7 3E-16 6.5E-21 101.7 10.7 82 28-112 132-214 (215)
70 TIGR00385 dsbE periplasmic pro 99.7 4.6E-16 9.9E-21 97.8 11.2 87 27-115 61-172 (173)
71 PHA02125 thioredoxin-like prot 99.7 4.5E-16 9.8E-21 85.2 9.9 70 33-110 2-73 (75)
72 TIGR02740 TraF-like TraF-like 99.7 1.3E-15 2.8E-20 101.6 13.4 90 26-116 163-266 (271)
73 TIGR02738 TrbB type-F conjugat 99.7 4.4E-16 9.5E-21 95.8 9.8 87 27-114 48-153 (153)
74 TIGR01130 ER_PDI_fam protein d 99.7 4.9E-16 1.1E-20 110.0 10.9 105 6-116 345-456 (462)
75 KOG4277 Uncharacterized conser 99.7 1.9E-16 4.1E-21 105.1 7.0 98 17-115 32-133 (468)
76 PRK03147 thiol-disulfide oxido 99.7 1.2E-15 2.5E-20 95.6 10.2 88 26-113 58-171 (173)
77 TIGR00412 redox_disulf_2 small 99.7 1.9E-15 4.2E-20 82.9 9.5 71 33-110 2-75 (76)
78 KOG0190 Protein disulfide isom 99.7 3.8E-16 8.3E-21 110.0 8.0 103 7-115 366-474 (493)
79 cd02973 TRX_GRX_like Thioredox 99.7 1.4E-15 3E-20 81.4 8.4 63 32-96 2-64 (67)
80 cd03026 AhpF_NTD_C TRX-GRX-lik 99.7 2.8E-15 6E-20 84.5 9.7 76 27-106 10-86 (89)
81 cd02955 SSP411 TRX domain, SSP 99.7 7.9E-15 1.7E-19 87.3 11.8 80 22-101 8-100 (124)
82 PRK11509 hydrogenase-1 operon 99.6 1.1E-14 2.3E-19 87.0 12.1 99 16-118 25-128 (132)
83 cd03008 TryX_like_RdCVF Trypar 99.6 2.5E-15 5.5E-20 91.6 9.5 72 26-97 22-128 (146)
84 KOG0912 Thiol-disulfide isomer 99.6 8.4E-16 1.8E-20 101.8 7.6 98 16-117 4-109 (375)
85 PF13905 Thioredoxin_8: Thiore 99.6 3.7E-15 8E-20 84.9 9.0 66 29-94 1-95 (95)
86 cd02958 UAS UAS family; UAS is 99.6 1.8E-14 3.9E-19 84.8 11.2 100 16-115 4-112 (114)
87 cd02964 TryX_like_family Trypa 99.6 3.9E-15 8.4E-20 89.7 8.3 78 21-98 9-116 (132)
88 cd03009 TryX_like_TryX_NRX Try 99.6 5.8E-15 1.2E-19 88.7 8.7 73 26-98 15-116 (131)
89 KOG0191 Thioredoxin/protein di 99.6 6.5E-15 1.4E-19 102.7 9.7 91 27-117 45-137 (383)
90 cd02966 TlpA_like_family TlpA- 99.6 1.1E-14 2.5E-19 84.6 9.2 74 27-100 17-116 (116)
91 PLN02412 probable glutathione 99.6 6.8E-15 1.5E-19 92.0 7.9 117 1-117 1-167 (167)
92 PTZ00056 glutathione peroxidas 99.6 8E-15 1.7E-19 94.0 8.4 97 21-117 31-181 (199)
93 PLN02919 haloacid dehalogenase 99.6 1.9E-14 4E-19 110.5 11.8 90 26-115 417-537 (1057)
94 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.5E-14 5.5E-19 84.9 10.0 83 26-109 17-121 (123)
95 PRK13728 conjugal transfer pro 99.6 5.4E-14 1.2E-18 88.3 11.3 83 33-116 73-173 (181)
96 cd03012 TlpA_like_DipZ_like Tl 99.6 5.2E-14 1.1E-18 84.1 9.7 80 22-101 16-125 (126)
97 PF08534 Redoxin: Redoxin; In 99.6 2E-14 4.3E-19 87.8 8.0 81 21-101 20-134 (146)
98 TIGR02661 MauD methylamine deh 99.6 4.7E-14 1E-18 89.8 9.0 86 27-113 72-178 (189)
99 PLN02399 phospholipid hydroper 99.5 4.2E-14 9E-19 92.5 8.7 96 20-115 90-235 (236)
100 cd02960 AGR Anterior Gradient 99.5 1E-13 2.2E-18 82.8 8.1 90 11-101 5-99 (130)
101 PF02114 Phosducin: Phosducin; 99.5 2.9E-13 6.4E-18 89.9 10.9 107 5-113 123-237 (265)
102 TIGR02540 gpx7 putative glutat 99.5 9E-14 2E-18 85.7 8.0 93 22-114 15-153 (153)
103 TIGR01626 ytfJ_HI0045 conserve 99.5 2.6E-13 5.6E-18 85.6 10.0 84 23-108 53-174 (184)
104 COG4232 Thiol:disulfide interc 99.5 1.3E-13 2.9E-18 98.4 9.3 102 10-113 457-567 (569)
105 KOG1731 FAD-dependent sulfhydr 99.5 1.9E-14 4.1E-19 102.1 4.6 108 5-116 37-155 (606)
106 cd02967 mauD Methylamine utili 99.5 5.1E-13 1.1E-17 78.3 9.0 70 28-97 20-111 (114)
107 smart00594 UAS UAS domain. 99.5 2.4E-12 5.2E-17 76.6 10.3 96 15-110 13-121 (122)
108 cd00340 GSH_Peroxidase Glutath 99.4 3.4E-13 7.5E-18 83.1 6.7 86 23-109 16-151 (152)
109 cd02969 PRX_like1 Peroxiredoxi 99.4 1.5E-12 3.2E-17 81.6 9.2 90 28-117 24-155 (171)
110 PF13899 Thioredoxin_7: Thiore 99.4 8.3E-13 1.8E-17 73.4 6.9 74 16-90 4-81 (82)
111 KOG0191 Thioredoxin/protein di 99.4 1.6E-12 3.6E-17 90.7 9.1 104 9-116 146-254 (383)
112 KOG1672 ATP binding protein [P 99.4 3.2E-12 7E-17 79.9 8.4 91 7-101 66-156 (211)
113 PF14595 Thioredoxin_9: Thiore 99.4 8.9E-12 1.9E-16 74.7 9.7 85 27-112 39-127 (129)
114 TIGR02196 GlrX_YruB Glutaredox 99.4 7.3E-12 1.6E-16 67.6 8.4 69 33-111 2-74 (74)
115 PTZ00256 glutathione peroxidas 99.4 3E-12 6.5E-17 81.2 7.8 95 21-115 32-182 (183)
116 COG2143 Thioredoxin-related pr 99.3 7.5E-11 1.6E-15 71.6 11.8 94 20-113 33-148 (182)
117 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 4.7E-12 1E-16 75.1 6.3 78 20-97 16-124 (124)
118 PF06110 DUF953: Eukaryotic pr 99.3 3.2E-11 7E-16 71.0 9.2 81 12-92 2-99 (119)
119 PRK00522 tpx lipid hydroperoxi 99.3 2.4E-11 5.1E-16 76.0 8.4 80 21-100 36-149 (167)
120 cd03017 PRX_BCP Peroxiredoxin 99.3 1.3E-11 2.8E-16 74.8 6.7 85 26-110 20-139 (140)
121 PF13192 Thioredoxin_3: Thiore 99.3 7.8E-11 1.7E-15 64.5 9.2 71 35-111 4-76 (76)
122 KOG0914 Thioredoxin-like prote 99.3 7.5E-12 1.6E-16 79.7 5.6 93 7-101 124-224 (265)
123 cd03014 PRX_Atyp2cys Peroxired 99.3 2.5E-11 5.3E-16 73.9 7.7 89 22-110 19-141 (143)
124 PF13728 TraF: F plasmid trans 99.3 1.1E-10 2.3E-15 75.7 10.6 82 27-109 118-213 (215)
125 PRK10606 btuE putative glutath 99.3 2.1E-11 4.5E-16 77.2 6.6 94 21-115 17-182 (183)
126 COG0526 TrxA Thiol-disulfide i 99.2 1E-10 2.2E-15 67.7 8.1 85 28-112 31-122 (127)
127 PF11009 DUF2847: Protein of u 99.2 4.1E-10 9E-15 64.7 10.2 95 10-106 2-104 (105)
128 cd02991 UAS_ETEA UAS family, E 99.2 7.6E-10 1.6E-14 65.3 11.6 99 16-116 4-115 (116)
129 TIGR02200 GlrX_actino Glutared 99.2 1.7E-10 3.8E-15 62.9 8.1 70 33-111 2-76 (77)
130 cd03018 PRX_AhpE_like Peroxire 99.2 1E-10 2.3E-15 71.5 7.9 82 21-102 19-134 (149)
131 cd03015 PRX_Typ2cys Peroxiredo 99.2 1.9E-10 4.1E-15 72.3 8.7 89 25-113 25-156 (173)
132 TIGR02739 TraF type-F conjugat 99.2 1.8E-09 3.9E-14 71.5 12.3 88 27-115 148-249 (256)
133 TIGR03137 AhpC peroxiredoxin. 99.1 2.7E-10 5.9E-15 72.5 7.4 87 25-111 27-153 (187)
134 cd01659 TRX_superfamily Thiore 99.1 5.2E-10 1.1E-14 57.9 7.4 60 33-92 1-63 (69)
135 KOG2501 Thioredoxin, nucleored 99.1 1.9E-10 4E-15 70.3 6.2 71 27-97 31-131 (157)
136 PRK09437 bcp thioredoxin-depen 99.1 3.9E-10 8.5E-15 69.5 7.8 88 22-109 23-148 (154)
137 PRK11200 grxA glutaredoxin 1; 99.1 1.8E-09 3.9E-14 60.3 9.3 76 32-114 2-83 (85)
138 PRK13703 conjugal pilus assemb 99.1 1.7E-09 3.7E-14 71.2 10.2 89 27-115 141-242 (248)
139 PRK10877 protein disulfide iso 99.1 1.6E-09 3.6E-14 71.0 9.9 81 27-113 105-230 (232)
140 cd02970 PRX_like2 Peroxiredoxi 99.1 2.2E-09 4.8E-14 65.4 9.4 72 29-100 24-148 (149)
141 PRK10382 alkyl hydroperoxide r 99.1 3.2E-09 6.9E-14 67.5 10.3 88 26-113 28-155 (187)
142 cd02971 PRX_family Peroxiredox 99.1 8.2E-10 1.8E-14 66.7 6.6 77 26-102 19-130 (140)
143 PRK13190 putative peroxiredoxi 99.1 3.1E-09 6.8E-14 68.4 9.5 94 22-115 20-155 (202)
144 KOG3425 Uncharacterized conser 99.0 3.7E-09 8.1E-14 61.5 8.3 76 15-91 12-104 (128)
145 KOG3414 Component of the U4/U6 99.0 2.5E-08 5.4E-13 58.5 11.5 106 8-115 4-121 (142)
146 PF03190 Thioredox_DsbH: Prote 99.0 4E-09 8.6E-14 65.3 8.3 80 19-98 27-119 (163)
147 TIGR02180 GRX_euk Glutaredoxin 99.0 3E-09 6.5E-14 58.9 6.6 59 33-94 1-64 (84)
148 cd02976 NrdH NrdH-redoxin (Nrd 99.0 8.7E-09 1.9E-13 55.3 7.9 68 33-110 2-73 (73)
149 cd02968 SCO SCO (an acronym fo 99.0 4E-09 8.8E-14 63.9 7.3 44 26-69 19-68 (142)
150 KOG0911 Glutaredoxin-related p 99.0 5.9E-10 1.3E-14 71.4 3.7 103 8-116 2-104 (227)
151 TIGR02183 GRXA Glutaredoxin, G 99.0 1.2E-08 2.7E-13 57.0 8.4 74 33-113 2-81 (86)
152 TIGR03143 AhpF_homolog putativ 98.9 2.2E-08 4.7E-13 73.2 11.4 79 28-110 475-554 (555)
153 PRK15000 peroxidase; Provision 98.9 2.4E-08 5.3E-13 64.2 10.3 86 28-113 33-161 (200)
154 KOG0913 Thiol-disulfide isomer 98.9 3.7E-10 8E-15 72.7 1.4 100 6-112 23-124 (248)
155 COG1225 Bcp Peroxiredoxin [Pos 98.9 1.6E-08 3.5E-13 62.2 8.2 112 2-113 3-155 (157)
156 PF02966 DIM1: Mitosis protein 98.9 1.5E-07 3.3E-12 55.9 11.6 103 9-114 2-117 (133)
157 KOG2603 Oligosaccharyltransfer 98.9 2.1E-08 4.6E-13 67.2 8.9 111 3-115 36-167 (331)
158 PRK10329 glutaredoxin-like pro 98.9 7E-08 1.5E-12 53.4 9.5 75 33-117 3-80 (81)
159 PRK13599 putative peroxiredoxi 98.9 2.2E-08 4.9E-13 65.0 8.6 88 26-113 25-155 (215)
160 cd03016 PRX_1cys Peroxiredoxin 98.9 6.4E-08 1.4E-12 62.4 10.3 89 26-114 21-154 (203)
161 cd03020 DsbA_DsbC_DsbG DsbA fa 98.9 2.7E-08 5.9E-13 63.7 8.4 77 27-110 75-197 (197)
162 PRK11657 dsbG disulfide isomer 98.9 5.7E-08 1.2E-12 64.5 10.0 83 27-111 115-249 (251)
163 PRK13191 putative peroxiredoxi 98.9 2.6E-08 5.6E-13 64.7 8.2 87 27-113 31-160 (215)
164 cd03023 DsbA_Com1_like DsbA fa 98.8 9.7E-08 2.1E-12 58.3 10.2 40 27-66 3-42 (154)
165 PTZ00137 2-Cys peroxiredoxin; 98.8 8.6E-08 1.9E-12 63.8 10.0 86 28-113 97-224 (261)
166 TIGR02194 GlrX_NrdH Glutaredox 98.8 7.5E-08 1.6E-12 52.0 7.5 68 33-109 1-71 (72)
167 PTZ00253 tryparedoxin peroxida 98.8 1.3E-07 2.7E-12 60.8 9.8 92 22-113 29-163 (199)
168 PRK15317 alkyl hydroperoxide r 98.8 1.5E-07 3.2E-12 68.3 11.2 90 17-112 106-196 (517)
169 PF00462 Glutaredoxin: Glutare 98.8 8.5E-08 1.9E-12 49.9 7.4 55 33-94 1-59 (60)
170 PRK13189 peroxiredoxin; Provis 98.8 1.4E-07 3.1E-12 61.6 9.8 87 28-114 34-163 (222)
171 PF13848 Thioredoxin_6: Thiore 98.7 1.9E-06 4.1E-11 54.2 13.1 101 7-112 77-184 (184)
172 PF13462 Thioredoxin_4: Thiore 98.7 8.3E-07 1.8E-11 54.8 11.2 81 27-112 10-162 (162)
173 PHA03050 glutaredoxin; Provisi 98.7 7.3E-08 1.6E-12 56.1 5.6 61 33-95 15-80 (108)
174 TIGR03140 AhpF alkyl hydropero 98.7 6.6E-07 1.4E-11 65.0 11.2 91 17-113 107-198 (515)
175 cd02983 P5_C P5 family, C-term 98.7 2.1E-06 4.6E-11 51.6 11.7 106 7-116 2-117 (130)
176 KOG3171 Conserved phosducin-li 98.7 2.1E-07 4.5E-12 59.6 7.5 105 6-112 137-249 (273)
177 cd03019 DsbA_DsbA DsbA family, 98.7 5.5E-07 1.2E-11 56.4 9.5 37 28-64 14-51 (178)
178 TIGR02190 GlrX-dom Glutaredoxi 98.6 2.5E-07 5.4E-12 50.9 6.9 60 28-94 5-67 (79)
179 PF05768 DUF836: Glutaredoxin- 98.6 2.5E-07 5.4E-12 51.1 6.6 77 33-111 2-81 (81)
180 cd03029 GRX_hybridPRX5 Glutare 98.6 8.9E-07 1.9E-11 47.7 8.6 66 33-110 3-71 (72)
181 TIGR02189 GlrX-like_plant Glut 98.6 1.3E-07 2.8E-12 54.3 5.4 56 33-95 10-72 (99)
182 PRK10954 periplasmic protein d 98.6 6.9E-07 1.5E-11 57.7 9.3 39 28-66 36-78 (207)
183 cd03419 GRX_GRXh_1_2_like Glut 98.6 4.1E-07 8.9E-12 50.0 6.6 57 33-94 2-63 (82)
184 PF01216 Calsequestrin: Calseq 98.6 2.5E-06 5.5E-11 58.3 11.5 105 7-117 34-147 (383)
185 KOG3170 Conserved phosducin-li 98.6 5.2E-07 1.1E-11 57.2 7.4 104 5-113 89-200 (240)
186 cd02066 GRX_family Glutaredoxi 98.5 1.1E-06 2.4E-11 46.7 7.0 57 33-96 2-62 (72)
187 TIGR03143 AhpF_homolog putativ 98.5 3.8E-06 8.1E-11 61.7 11.7 103 13-117 352-457 (555)
188 cd03418 GRX_GRXb_1_3_like Glut 98.5 1.8E-06 3.8E-11 46.7 7.7 56 33-95 2-62 (75)
189 PF07449 HyaE: Hydrogenase-1 e 98.5 1.6E-06 3.4E-11 50.2 7.4 88 9-101 11-101 (107)
190 TIGR02181 GRX_bact Glutaredoxi 98.5 9.1E-07 2E-11 48.5 6.1 55 33-94 1-59 (79)
191 cd03027 GRX_DEP Glutaredoxin ( 98.5 2.3E-06 4.9E-11 46.2 7.6 56 33-95 3-62 (73)
192 PRK10824 glutaredoxin-4; Provi 98.4 9.5E-07 2.1E-11 51.9 5.5 50 39-95 28-81 (115)
193 TIGR00365 monothiol glutaredox 98.4 8.3E-06 1.8E-10 46.6 8.4 49 39-94 25-77 (97)
194 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 1.9E-05 4E-10 46.2 9.4 95 15-115 6-109 (111)
195 PRK10638 glutaredoxin 3; Provi 98.3 7E-06 1.5E-10 45.4 7.0 56 33-95 4-63 (83)
196 cd02981 PDI_b_family Protein D 98.3 2.7E-05 5.9E-10 44.1 9.4 92 10-112 2-96 (97)
197 cd03028 GRX_PICOT_like Glutare 98.3 8.3E-06 1.8E-10 45.9 6.8 59 29-94 7-73 (90)
198 PF00837 T4_deiodinase: Iodoth 98.2 2.3E-05 4.9E-10 51.3 8.8 106 4-113 79-236 (237)
199 COG0695 GrxC Glutaredoxin and 98.2 8.5E-06 1.8E-10 44.9 5.8 51 33-88 3-59 (80)
200 KOG1752 Glutaredoxin and relat 98.1 1.2E-05 2.6E-10 46.4 5.7 58 33-95 16-78 (104)
201 cd03067 PDI_b_PDIR_N PDIb fami 98.1 6.5E-05 1.4E-09 42.8 8.0 98 9-111 3-109 (112)
202 cd02972 DsbA_family DsbA famil 98.0 3.9E-05 8.5E-10 42.8 6.6 58 33-90 1-91 (98)
203 PTZ00062 glutaredoxin; Provisi 98.0 9.8E-05 2.1E-09 47.7 8.4 71 18-95 102-179 (204)
204 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 0.00015 3.3E-09 42.4 8.5 73 40-113 29-110 (111)
205 COG0386 BtuE Glutathione perox 97.9 4.9E-05 1.1E-09 46.5 6.1 95 20-115 16-161 (162)
206 PF07912 ERp29_N: ERp29, N-ter 97.8 0.0012 2.7E-08 39.0 10.2 96 10-114 7-119 (126)
207 PRK12759 bifunctional gluaredo 97.8 0.0001 2.2E-09 52.4 6.9 54 33-93 4-69 (410)
208 PF01323 DSBA: DSBA-like thior 97.7 0.00084 1.8E-08 42.5 9.9 33 32-64 1-33 (193)
209 cd03013 PRX5_like Peroxiredoxi 97.7 0.00023 5.1E-09 44.0 7.0 74 28-101 28-140 (155)
210 COG1331 Highly conserved prote 97.7 0.00034 7.5E-09 51.9 8.5 75 20-96 34-123 (667)
211 KOG1651 Glutathione peroxidase 97.7 0.00026 5.6E-09 43.9 6.1 111 5-115 10-170 (171)
212 cd03066 PDI_b_Calsequestrin_mi 97.5 0.0049 1.1E-07 35.3 9.8 94 9-113 2-100 (102)
213 COG1651 DsbG Protein-disulfide 97.4 0.0028 6.1E-08 41.8 8.7 37 73-114 206-243 (244)
214 PF13743 Thioredoxin_5: Thiore 97.3 0.0022 4.7E-08 40.5 7.5 32 35-66 2-34 (176)
215 cd03031 GRX_GRX_like Glutaredo 97.2 0.0046 1E-07 38.0 7.3 56 33-95 2-71 (147)
216 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.024 5.2E-07 32.6 8.9 91 9-113 2-103 (104)
217 PF13848 Thioredoxin_6: Thiore 96.9 0.015 3.3E-07 36.3 8.5 64 46-114 7-75 (184)
218 cd02974 AhpF_NTD_N Alkyl hydro 96.9 0.026 5.6E-07 32.0 10.7 84 16-113 8-93 (94)
219 PRK15317 alkyl hydroperoxide r 96.9 0.026 5.7E-07 41.4 10.4 88 16-117 8-97 (517)
220 COG1999 Uncharacterized protei 96.8 0.02 4.3E-07 37.2 8.5 101 16-116 54-206 (207)
221 KOG2640 Thioredoxin [Function 96.7 0.00056 1.2E-08 46.4 0.7 88 27-115 74-163 (319)
222 COG2761 FrnE Predicted dithiol 96.6 0.069 1.5E-06 35.1 9.9 41 73-117 175-216 (225)
223 TIGR03140 AhpF alkyl hydropero 96.6 0.073 1.6E-06 39.1 11.2 89 16-117 8-98 (515)
224 COG0450 AhpC Peroxiredoxin [Po 96.6 0.053 1.1E-06 34.7 8.8 88 26-113 30-160 (194)
225 COG4545 Glutaredoxin-related p 96.4 0.0055 1.2E-07 33.1 3.0 62 34-96 5-77 (85)
226 cd03040 GST_N_mPGES2 GST_N fam 96.3 0.051 1.1E-06 29.1 6.9 73 33-114 2-76 (77)
227 PF06491 Disulph_isomer: Disul 96.3 0.077 1.7E-06 31.8 7.8 106 6-115 15-133 (136)
228 cd02977 ArsC_family Arsenate R 96.3 0.0072 1.6E-07 34.8 3.6 33 33-70 1-33 (105)
229 cd03060 GST_N_Omega_like GST_N 96.2 0.024 5.2E-07 30.0 5.2 58 34-95 2-60 (71)
230 cd03068 PDI_b_ERp72 PDIb famil 96.2 0.099 2.1E-06 30.3 10.5 94 9-112 2-106 (107)
231 COG3019 Predicted metal-bindin 96.2 0.12 2.6E-06 31.4 8.3 74 29-112 24-102 (149)
232 PF00255 GSHPx: Glutathione pe 96.1 0.0055 1.2E-07 35.7 2.3 48 21-69 13-62 (108)
233 TIGR01617 arsC_related transcr 96.1 0.016 3.6E-07 34.0 4.4 34 34-72 2-35 (117)
234 cd03041 GST_N_2GST_N GST_N fam 96.1 0.011 2.3E-07 32.0 3.4 70 33-112 2-75 (77)
235 cd02990 UAS_FAF1 UAS family, F 96.1 0.16 3.4E-06 30.9 12.4 96 17-114 5-133 (136)
236 KOG2792 Putative cytochrome C 95.9 0.088 1.9E-06 35.3 7.6 96 21-116 131-277 (280)
237 cd03037 GST_N_GRX2 GST_N famil 95.9 0.037 8.1E-07 29.2 4.9 55 35-93 3-57 (71)
238 cd03036 ArsC_like Arsenate Red 95.7 0.024 5.3E-07 33.0 3.9 33 34-71 2-34 (111)
239 PHA03075 glutaredoxin-like pro 95.6 0.02 4.4E-07 33.5 3.3 30 30-59 2-31 (123)
240 PRK01655 spxA transcriptional 95.6 0.031 6.6E-07 33.7 4.3 32 33-69 2-33 (131)
241 PF04592 SelP_N: Selenoprotein 95.6 0.29 6.3E-06 32.4 8.8 43 26-68 23-70 (238)
242 PF06053 DUF929: Domain of unk 95.4 0.11 2.5E-06 34.7 6.8 37 27-63 56-92 (249)
243 cd00570 GST_N_family Glutathio 95.4 0.035 7.6E-07 28.4 3.7 52 34-88 2-55 (71)
244 TIGR02742 TrbC_Ftype type-F co 95.4 0.29 6.4E-06 29.5 8.9 71 16-93 12-82 (130)
245 cd02978 KaiB_like KaiB-like fa 95.2 0.16 3.4E-06 27.4 5.8 57 32-88 3-61 (72)
246 cd03035 ArsC_Yffb Arsenate Red 95.1 0.038 8.1E-07 32.0 3.4 33 33-70 1-33 (105)
247 cd03051 GST_N_GTT2_like GST_N 95.1 0.064 1.4E-06 28.2 4.2 56 34-93 2-61 (74)
248 cd03032 ArsC_Spx Arsenate Redu 94.9 0.095 2.1E-06 30.7 4.9 33 33-70 2-34 (115)
249 KOG2507 Ubiquitin regulatory p 94.9 0.66 1.4E-05 33.4 9.4 97 17-114 7-111 (506)
250 PRK09301 circadian clock prote 94.6 0.2 4.3E-06 28.9 5.4 78 28-106 4-85 (103)
251 PF13778 DUF4174: Domain of un 94.6 0.5 1.1E-05 27.9 9.2 87 27-113 8-111 (118)
252 TIGR02654 circ_KaiB circadian 94.6 0.22 4.8E-06 27.8 5.4 71 30-101 3-75 (87)
253 PRK12559 transcriptional regul 94.5 0.088 1.9E-06 31.7 4.1 31 33-68 2-32 (131)
254 PF09673 TrbC_Ftype: Type-F co 94.2 0.61 1.3E-05 27.3 8.7 71 15-91 10-80 (113)
255 cd03059 GST_N_SspA GST_N famil 94.2 0.11 2.3E-06 27.4 3.6 51 34-87 2-53 (73)
256 cd03045 GST_N_Delta_Epsilon GS 94.2 0.2 4.2E-06 26.4 4.6 52 34-88 2-57 (74)
257 COG3634 AhpF Alkyl hydroperoxi 94.2 0.49 1.1E-05 33.6 7.5 90 17-112 106-196 (520)
258 PF02630 SCO1-SenC: SCO1/SenC; 94.0 0.07 1.5E-06 33.6 3.0 50 20-69 43-97 (174)
259 COG3531 Predicted protein-disu 93.9 0.17 3.8E-06 32.6 4.5 43 73-115 165-210 (212)
260 KOG0855 Alkyl hydroperoxide re 93.9 0.22 4.7E-06 31.4 4.8 61 6-68 66-132 (211)
261 PF13417 GST_N_3: Glutathione 93.7 0.54 1.2E-05 25.0 8.4 71 35-115 1-72 (75)
262 PRK13344 spxA transcriptional 93.3 0.22 4.8E-06 30.0 4.2 31 33-68 2-32 (132)
263 cd03055 GST_N_Omega GST_N fami 93.2 0.47 1E-05 26.3 5.2 53 33-88 19-72 (89)
264 PF06953 ArsD: Arsenical resis 93.2 1.1 2.4E-05 26.8 7.0 65 47-115 29-103 (123)
265 PF06764 DUF1223: Protein of u 92.5 1.9 4.2E-05 28.0 10.8 78 34-116 3-100 (202)
266 cd03024 DsbA_FrnE DsbA family, 91.6 0.34 7.3E-06 30.8 3.7 35 72-110 165-200 (201)
267 PF04134 DUF393: Protein of un 91.3 0.46 1E-05 27.5 3.8 57 36-93 2-61 (114)
268 cd03074 PDI_b'_Calsequestrin_C 90.9 2 4.4E-05 25.1 9.2 87 28-114 19-120 (120)
269 cd03025 DsbA_FrnE_like DsbA fa 90.6 0.69 1.5E-05 29.1 4.4 27 33-59 3-29 (193)
270 cd03056 GST_N_4 GST_N family, 90.3 1.1 2.3E-05 23.3 4.4 57 34-95 2-62 (73)
271 PF09695 YtfJ_HI0045: Bacteria 90.2 3.1 6.7E-05 26.0 7.0 40 73-112 114-156 (160)
272 cd03022 DsbA_HCCA_Iso DsbA fam 89.4 0.62 1.4E-05 29.3 3.5 33 73-110 158-191 (192)
273 cd03033 ArsC_15kD Arsenate Red 89.2 0.68 1.5E-05 27.1 3.3 22 33-54 2-23 (113)
274 TIGR00014 arsC arsenate reduct 89.1 0.77 1.7E-05 26.9 3.5 30 34-68 2-31 (114)
275 cd03052 GST_N_GDAP1 GST_N fami 88.9 2.3 4.9E-05 22.5 5.9 56 34-94 2-61 (73)
276 KOG0852 Alkyl hydroperoxide re 88.4 4.8 0.0001 25.7 6.9 93 21-113 25-160 (196)
277 cd03034 ArsC_ArsC Arsenate Red 87.9 0.97 2.1E-05 26.3 3.4 30 34-68 2-31 (112)
278 PF09822 ABC_transp_aux: ABC-t 87.5 6.7 0.00015 26.4 13.5 73 6-82 6-88 (271)
279 COG1393 ArsC Arsenate reductas 87.2 1.1 2.4E-05 26.5 3.3 27 32-58 2-28 (117)
280 PF07689 KaiB: KaiB domain; I 86.7 0.42 9.2E-06 26.4 1.3 51 37-87 4-56 (82)
281 PRK00366 ispG 4-hydroxy-3-meth 86.6 1.8 3.9E-05 30.6 4.5 100 8-114 245-357 (360)
282 COG3011 Predicted thiol-disulf 86.1 5.8 0.00013 24.2 6.6 69 27-96 4-74 (137)
283 COG3411 Ferredoxin [Energy pro 84.8 3.7 8.1E-05 21.5 4.1 32 83-117 17-48 (64)
284 PF04551 GcpE: GcpE protein; 84.7 3 6.5E-05 29.5 4.9 100 7-113 244-358 (359)
285 COG5429 Uncharacterized secret 84.4 4.9 0.00011 26.9 5.4 84 29-115 41-142 (261)
286 KOG1422 Intracellular Cl- chan 84.3 9.5 0.0002 25.1 7.2 67 40-116 20-87 (221)
287 COG5494 Predicted thioredoxin/ 83.9 10 0.00022 25.1 6.9 71 33-112 13-86 (265)
288 PRK10853 putative reductase; P 83.5 2.3 4.9E-05 25.1 3.5 31 33-68 2-32 (118)
289 COG0821 gcpE 1-hydroxy-2-methy 82.8 6.3 0.00014 27.8 5.7 103 7-116 237-353 (361)
290 PRK13730 conjugal transfer pil 82.7 3.5 7.6E-05 26.9 4.2 30 71-101 151-180 (212)
291 KOG2244 Highly conserved prote 82.3 1.9 4.1E-05 32.4 3.3 69 19-89 102-184 (786)
292 PF02401 LYTB: LytB protein; 81.1 15 0.00033 25.2 7.9 97 15-115 167-279 (281)
293 PF08806 Sep15_SelM: Sep15/Sel 80.6 3.7 7.9E-05 22.4 3.3 34 81-114 40-76 (78)
294 PF03960 ArsC: ArsC family; I 79.8 5.5 0.00012 22.9 4.2 30 36-70 1-30 (110)
295 TIGR01616 nitro_assoc nitrogen 79.6 3.7 8E-05 24.6 3.4 23 32-54 2-24 (126)
296 cd03025 DsbA_FrnE_like DsbA fa 79.3 3.3 7.2E-05 26.0 3.4 21 73-93 160-180 (193)
297 TIGR02743 TraW type-F conjugat 79.0 3.2 6.9E-05 27.0 3.2 28 68-96 171-198 (202)
298 PRK09481 sspA stringent starva 78.0 13 0.00028 23.8 5.9 62 29-95 7-69 (211)
299 cd03021 DsbA_GSTK DsbA family, 77.4 4.4 9.5E-05 26.1 3.6 37 73-110 170-208 (209)
300 PRK10026 arsenate reductase; P 76.7 5 0.00011 24.6 3.5 22 33-54 4-25 (141)
301 cd03049 GST_N_3 GST_N family, 76.3 8.9 0.00019 19.9 5.7 58 35-94 3-61 (73)
302 cd03058 GST_N_Tau GST_N family 74.8 10 0.00022 19.8 5.3 51 35-88 3-55 (74)
303 PF00352 TBP: Transcription fa 74.3 9.4 0.0002 21.0 3.9 31 83-115 49-80 (86)
304 cd03061 GST_N_CLIC GST_N famil 74.2 13 0.00029 20.9 7.0 68 39-116 20-88 (91)
305 cd03044 GST_N_EF1Bgamma GST_N 74.0 8.9 0.00019 20.1 3.7 55 35-93 3-60 (75)
306 PRK13738 conjugal transfer pil 73.1 6 0.00013 25.9 3.3 29 68-96 169-198 (209)
307 PF07511 DUF1525: Protein of u 72.9 13 0.00029 21.9 4.4 16 74-89 75-90 (114)
308 cd03024 DsbA_FrnE DsbA family, 71.4 11 0.00024 23.8 4.3 25 35-59 3-27 (201)
309 KOG0912 Thiol-disulfide isomer 70.9 34 0.00073 24.1 6.6 96 5-112 106-206 (375)
310 cd03053 GST_N_Phi GST_N family 70.8 13 0.00028 19.3 6.2 52 33-87 2-57 (76)
311 PRK10387 glutaredoxin 2; Provi 70.4 18 0.00038 23.0 5.1 56 35-94 3-58 (210)
312 PF12617 LdpA_C: Iron-Sulfur b 69.9 21 0.00046 22.9 5.1 72 43-114 19-97 (183)
313 PF14424 Toxin-deaminase: The 69.9 22 0.00048 21.5 6.3 34 31-67 98-131 (133)
314 COG2077 Tpx Peroxiredoxin [Pos 69.1 25 0.00055 21.9 5.3 63 6-68 21-84 (158)
315 PF11072 DUF2859: Protein of u 69.0 7.3 0.00016 23.9 2.9 17 71-87 120-136 (142)
316 TIGR02182 GRXB Glutaredoxin, G 67.9 21 0.00046 22.9 5.1 54 36-93 3-56 (209)
317 cd03022 DsbA_HCCA_Iso DsbA fam 67.9 8.4 0.00018 24.1 3.2 25 35-59 3-27 (192)
318 TIGR00612 ispG_gcpE 1-hydroxy- 67.8 5.6 0.00012 28.0 2.4 90 7-100 235-334 (346)
319 COG2101 SPT15 TATA-box binding 67.1 20 0.00043 22.9 4.5 30 85-116 55-85 (185)
320 cd03062 TRX_Fd_Sucrase TRX-lik 66.9 18 0.0004 20.4 4.1 32 82-116 52-85 (97)
321 PTZ00151 translationally contr 66.9 10 0.00022 24.1 3.3 41 53-93 124-167 (172)
322 TIGR03765 ICE_PFL_4695 integra 65.6 7.6 0.00017 22.5 2.3 17 71-87 82-98 (105)
323 cd03039 GST_N_Sigma_like GST_N 65.5 17 0.00036 18.7 3.6 55 35-94 3-59 (72)
324 TIGR03757 conj_TIGR03757 integ 63.7 25 0.00055 20.7 4.3 16 74-89 76-91 (113)
325 cd03050 GST_N_Theta GST_N fami 63.7 20 0.00042 18.7 5.5 55 34-93 2-60 (76)
326 PF11287 DUF3088: Protein of u 63.5 14 0.00031 21.7 3.2 51 40-90 23-76 (112)
327 COG3531 Predicted protein-disu 61.5 9 0.00019 25.0 2.3 35 31-66 2-36 (212)
328 cd03070 PDI_b_ERp44 PDIb famil 61.5 27 0.0006 19.7 5.4 51 9-67 1-52 (91)
329 PF07315 DUF1462: Protein of u 61.3 28 0.00061 19.7 7.8 68 40-111 8-93 (93)
330 TIGR03759 conj_TIGR03759 integ 60.8 34 0.00074 22.3 4.8 36 29-67 108-143 (200)
331 PRK15113 glutathione S-transfe 59.1 40 0.00087 21.6 5.2 56 30-88 3-64 (214)
332 COG0278 Glutaredoxin-related p 58.8 34 0.00073 19.8 6.5 66 27-96 13-83 (105)
333 PF13409 GST_N_2: Glutathione 58.7 25 0.00053 18.2 5.2 64 40-111 1-68 (70)
334 cd04518 TBP_archaea archaeal T 57.8 37 0.00079 21.6 4.6 29 85-115 140-169 (174)
335 KOG1364 Predicted ubiquitin re 57.1 25 0.00053 25.0 4.0 56 61-116 133-191 (356)
336 cd04516 TBP_eukaryotes eukaryo 56.0 41 0.00088 21.4 4.6 28 85-114 49-77 (174)
337 cd04517 TLF TBP-like factors ( 55.8 43 0.00093 21.3 4.7 29 84-114 48-77 (174)
338 PLN00062 TATA-box-binding prot 55.7 40 0.00086 21.6 4.5 29 84-114 48-77 (179)
339 PRK00394 transcription factor; 55.1 41 0.00088 21.5 4.5 30 84-115 47-77 (179)
340 PRK00394 transcription factor; 55.0 43 0.00093 21.4 4.6 29 85-115 141-170 (179)
341 cd00652 TBP_TLF TATA box bindi 54.9 43 0.00093 21.2 4.6 29 84-114 48-77 (174)
342 PF11238 DUF3039: Protein of u 54.7 20 0.00044 18.4 2.5 26 26-51 21-57 (58)
343 PLN00062 TATA-box-binding prot 53.9 44 0.00096 21.3 4.6 29 85-115 140-169 (179)
344 cd03071 PDI_b'_NRX PDIb' famil 53.3 45 0.00098 19.6 7.4 87 28-114 13-115 (116)
345 cd04516 TBP_eukaryotes eukaryo 51.9 50 0.0011 21.0 4.6 28 86-115 141-169 (174)
346 COG1744 Med Uncharacterized AB 51.6 38 0.00081 24.0 4.3 47 15-68 83-129 (345)
347 PF05176 ATP-synt_10: ATP10 pr 51.5 74 0.0016 21.5 7.8 39 73-111 205-247 (252)
348 KOG1731 FAD-dependent sulfhydr 51.1 20 0.00043 27.3 3.0 57 59-116 214-271 (606)
349 PF14437 MafB19-deam: MafB19-l 51.0 58 0.0013 20.2 6.0 40 17-59 87-126 (146)
350 cd03054 GST_N_Metaxin GST_N fa 50.5 35 0.00076 17.5 4.8 41 39-88 14-54 (72)
351 KOG0868 Glutathione S-transfer 48.2 6.4 0.00014 25.3 0.1 66 28-95 3-68 (217)
352 PF01216 Calsequestrin: Calseq 46.9 1.1E+02 0.0023 22.1 12.5 89 27-115 266-369 (383)
353 cd03038 GST_N_etherase_LigE GS 46.7 26 0.00055 18.7 2.4 66 38-112 13-81 (84)
354 cd03021 DsbA_GSTK DsbA family, 45.5 69 0.0015 20.6 4.6 35 32-66 2-37 (209)
355 PF14307 Glyco_tran_WbsX: Glyc 45.3 72 0.0016 22.5 5.0 40 28-67 157-198 (345)
356 PF05679 CHGN: Chondroitin N-a 44.5 1.3E+02 0.0029 22.5 8.0 58 27-84 279-340 (499)
357 PF10262 Rdx: Rdx family; Int 44.4 50 0.0011 17.6 7.3 68 33-113 3-76 (76)
358 PF00838 TCTP: Translationally 43.5 14 0.00031 23.2 1.2 44 49-92 116-162 (165)
359 PF14639 YqgF: Holliday-juncti 41.0 61 0.0013 20.0 3.6 39 16-59 53-91 (150)
360 cd03076 GST_N_Pi GST_N family, 40.6 55 0.0012 16.9 4.0 56 34-94 3-59 (73)
361 cd02010 TPP_ALS Thiamine pyrop 40.5 35 0.00076 21.4 2.6 29 9-37 140-168 (177)
362 KOG2990 C2C2-type Zn-finger pr 40.5 26 0.00056 24.2 2.1 23 28-50 39-64 (317)
363 TIGR03439 methyl_EasF probable 40.2 70 0.0015 22.5 4.2 38 30-70 77-114 (319)
364 PLN02378 glutathione S-transfe 39.8 83 0.0018 20.2 4.4 47 39-88 18-65 (213)
365 COG1921 SelA Selenocysteine sy 39.7 1.5E+02 0.0032 21.7 6.2 95 13-113 144-246 (395)
366 TIGR01287 nifH nitrogenase iro 39.5 29 0.00063 23.3 2.3 57 22-80 214-270 (275)
367 cd03030 GRX_SH3BGR Glutaredoxi 39.4 71 0.0015 17.9 7.2 45 43-88 14-66 (92)
368 PRK11752 putative S-transferas 38.4 1.2E+02 0.0027 20.3 5.9 53 36-88 47-106 (264)
369 COG3581 Uncharacterized protei 38.3 1.4E+02 0.0029 22.0 5.3 52 16-68 57-112 (420)
370 PF00708 Acylphosphatase: Acyl 38.2 71 0.0015 17.6 4.3 40 73-115 25-64 (91)
371 KOG4277 Uncharacterized conser 38.1 1.5E+02 0.0032 21.1 8.6 81 26-113 150-230 (468)
372 TIGR00216 ispH_lytB (E)-4-hydr 38.1 1.4E+02 0.0029 20.7 8.7 98 14-115 165-278 (280)
373 PF05988 DUF899: Bacterial pro 37.9 1.2E+02 0.0026 20.1 7.6 43 26-68 65-114 (211)
374 cd02008 TPP_IOR_alpha Thiamine 37.8 42 0.00092 21.0 2.7 31 9-39 144-177 (178)
375 COG0295 Cdd Cytidine deaminase 37.7 23 0.0005 21.6 1.4 13 39-51 86-98 (134)
376 PRK01045 ispH 4-hydroxy-3-meth 37.6 1.4E+02 0.0031 20.8 9.1 98 14-115 167-280 (298)
377 cd06353 PBP1_BmpA_Med_like Per 37.0 1.3E+02 0.0028 20.1 5.3 48 14-68 42-89 (258)
378 cd03048 GST_N_Ure2p_like GST_N 36.6 68 0.0015 16.8 3.7 69 36-113 4-78 (81)
379 cd03375 TPP_OGFOR Thiamine pyr 35.8 54 0.0012 20.9 3.0 28 11-38 156-183 (193)
380 cd02015 TPP_AHAS Thiamine pyro 35.6 53 0.0011 20.7 2.9 26 12-37 147-172 (186)
381 PF07894 DUF1669: Protein of u 35.6 1.5E+02 0.0033 20.6 6.0 65 27-91 115-183 (284)
382 PRK11869 2-oxoacid ferredoxin 35.1 59 0.0013 22.4 3.2 31 12-42 166-196 (280)
383 COG2093 DNA-directed RNA polym 34.9 12 0.00027 19.5 -0.0 35 41-82 21-55 (64)
384 PF11453 DUF2950: Protein of u 34.3 58 0.0013 22.3 3.0 38 76-113 225-262 (271)
385 PF11858 DUF3378: Domain of un 34.1 82 0.0018 17.3 3.1 24 85-110 41-64 (81)
386 PF07293 DUF1450: Protein of u 33.8 85 0.0019 17.2 4.0 58 49-117 18-75 (78)
387 KOG0053 Cystathionine beta-lya 33.3 1.3E+02 0.0028 22.1 4.7 39 29-69 161-200 (409)
388 TIGR00862 O-ClC intracellular 33.2 1.5E+02 0.0033 19.8 6.7 66 39-114 17-83 (236)
389 PLN02817 glutathione dehydroge 32.9 1.2E+02 0.0027 20.5 4.5 46 40-88 72-118 (265)
390 PF03227 GILT: Gamma interfero 32.8 1E+02 0.0022 17.7 4.4 21 33-53 3-24 (108)
391 cd03042 GST_N_Zeta GST_N famil 32.7 73 0.0016 16.1 4.7 50 36-88 4-57 (73)
392 cd02980 TRX_Fd_family Thioredo 32.0 81 0.0018 16.4 3.6 29 81-112 48-76 (77)
393 cd05863 Ig2_VEGFR-3 Second imm 31.8 46 0.00099 17.3 1.8 15 82-96 11-25 (67)
394 KOG4498 Uncharacterized conser 31.6 1.2E+02 0.0027 19.7 3.9 40 27-66 49-90 (197)
395 PLN02473 glutathione S-transfe 31.4 1.4E+02 0.0031 18.9 6.3 57 34-95 4-64 (214)
396 PRK13669 hypothetical protein; 31.3 97 0.0021 17.0 4.0 54 51-116 20-74 (78)
397 PF10865 DUF2703: Domain of un 31.2 1.2E+02 0.0026 18.1 4.7 53 39-96 13-73 (120)
398 TIGR00595 priA primosomal prot 31.2 1E+02 0.0022 23.1 4.1 23 48-70 272-294 (505)
399 PF13120 DUF3974: Domain of un 31.0 33 0.00072 19.6 1.2 23 36-58 32-54 (126)
400 COG0761 lytB 4-Hydroxy-3-methy 30.8 1.9E+02 0.0041 20.2 8.9 98 14-115 169-282 (294)
401 COG0266 Nei Formamidopyrimidin 30.7 12 0.00026 25.6 -0.7 7 39-45 266-272 (273)
402 PF15379 DUF4606: Domain of un 30.4 62 0.0013 18.8 2.3 16 38-53 31-46 (104)
403 PF07700 HNOB: Heme NO binding 30.4 1.4E+02 0.003 18.6 5.1 41 28-68 126-168 (171)
404 PRK12411 cytidine deaminase; P 30.4 34 0.00073 20.7 1.3 13 39-51 84-96 (132)
405 cd05855 Ig_TrkB_d5 Fifth domai 30.3 41 0.00088 18.2 1.5 14 83-96 12-25 (79)
406 cd02014 TPP_POX Thiamine pyrop 29.7 66 0.0014 20.1 2.6 8 60-67 164-171 (178)
407 COG0625 Gst Glutathione S-tran 29.6 99 0.0021 19.7 3.5 51 35-88 3-56 (211)
408 PF01053 Cys_Met_Meta_PP: Cys/ 29.5 2.2E+02 0.0048 20.6 5.7 53 12-70 127-180 (386)
409 cd06538 CIDE_N_FSP27 CIDE_N do 29.5 1E+02 0.0022 17.0 2.9 24 73-96 29-52 (79)
410 KOG0911 Glutaredoxin-related p 29.5 1.8E+02 0.0039 19.5 5.1 49 39-94 152-204 (227)
411 PF09363 XFP_C: XFP C-terminal 29.3 69 0.0015 21.0 2.6 21 14-38 88-108 (203)
412 PRK05578 cytidine deaminase; V 29.3 37 0.0008 20.5 1.3 25 39-68 84-108 (131)
413 PF04502 DUF572: Family of unk 29.0 32 0.0007 24.1 1.2 22 28-49 27-51 (324)
414 PF02310 B12-binding: B12 bind 28.7 1.2E+02 0.0026 17.2 4.2 47 16-66 41-87 (121)
415 KOG1371 UDP-glucose 4-epimeras 28.6 1.2E+02 0.0026 21.6 3.8 62 27-91 25-86 (343)
416 KOG4079 Putative mitochondrial 27.2 1.3E+02 0.0028 18.5 3.4 35 83-117 74-110 (169)
417 cd03043 GST_N_1 GST_N family, 27.0 1E+02 0.0022 15.9 4.0 51 39-94 8-61 (73)
418 TIGR02652 conserved hypothetic 26.5 25 0.00053 21.6 0.2 14 39-52 10-23 (163)
419 PF02608 Bmp: Basic membrane p 26.4 1.1E+02 0.0024 21.0 3.4 48 15-69 47-94 (306)
420 cd02013 TPP_Xsc_like Thiamine 26.3 91 0.002 19.9 2.8 28 10-37 147-177 (196)
421 PF09654 DUF2396: Protein of u 26.1 24 0.00052 21.6 0.1 13 40-52 8-20 (161)
422 cd07973 Spt4 Transcription elo 26.0 86 0.0019 18.0 2.4 68 36-112 18-93 (98)
423 PRK06848 hypothetical protein; 26.0 44 0.00096 20.4 1.3 13 39-51 95-107 (139)
424 COG3054 Predicted transcriptio 25.9 1.8E+02 0.0039 18.4 5.4 35 77-111 140-177 (184)
425 PHA02131 hypothetical protein 25.7 1.1E+02 0.0023 15.6 3.7 26 81-106 27-52 (70)
426 cd02001 TPP_ComE_PpyrDC Thiami 25.6 86 0.0019 19.3 2.6 27 10-36 126-152 (157)
427 PF14432 DYW_deaminase: DYW fa 25.5 55 0.0012 19.2 1.6 19 39-57 84-102 (116)
428 TIGR02949 anti_SigH_actin anti 25.3 87 0.0019 17.1 2.3 19 39-57 37-55 (84)
429 COG2999 GrxB Glutaredoxin 2 [P 25.2 40 0.00087 21.8 1.0 52 38-93 6-57 (215)
430 PRK05778 2-oxoglutarate ferred 25.1 92 0.002 21.7 2.8 33 11-44 175-207 (301)
431 PF08671 SinI: Anti-repressor 25.0 78 0.0017 13.9 2.0 14 99-112 15-28 (30)
432 cd03376 TPP_PFOR_porB_like Thi 25.0 1.2E+02 0.0027 20.1 3.3 29 11-39 172-200 (235)
433 PHA02151 hypothetical protein 24.8 52 0.0011 20.8 1.4 15 28-42 202-216 (217)
434 cd01840 SGNH_hydrolase_yrhL_li 24.6 1.7E+02 0.0036 17.5 5.6 16 28-43 50-65 (150)
435 PF05184 SapB_1: Saposin-like 24.6 66 0.0014 14.3 1.5 17 40-56 3-19 (39)
436 PRK08298 cytidine deaminase; V 24.6 49 0.0011 20.1 1.3 13 39-51 87-99 (136)
437 cd02006 TPP_Gcl Thiamine pyrop 24.4 95 0.002 19.9 2.7 12 12-23 163-174 (202)
438 PF02702 KdpD: Osmosensitive K 24.4 2.2E+02 0.0048 18.9 8.1 69 28-96 3-72 (211)
439 cd06537 CIDE_N_B CIDE_N domain 24.3 1.4E+02 0.003 16.6 2.8 23 74-96 30-52 (81)
440 PRK06163 hypothetical protein; 24.3 1.1E+02 0.0023 19.9 2.9 28 11-38 145-172 (202)
441 PLN02402 cytidine deaminase 24.3 1E+02 0.0022 21.6 2.8 22 30-51 93-114 (303)
442 PRK14811 formamidopyrimidine-D 24.1 13 0.00029 25.2 -1.4 10 39-48 256-265 (269)
443 PF08168 NUC205: NUC205 domain 24.0 69 0.0015 15.5 1.4 17 27-43 13-29 (44)
444 KOG3286 Selenoprotein T [Gener 23.6 2.3E+02 0.005 18.8 4.8 73 30-102 69-144 (226)
445 PF11006 DUF2845: Protein of u 23.6 1.4E+02 0.0031 16.4 3.4 21 79-99 65-85 (87)
446 cd04971 Ig_TrKABC_d5 Fifth dom 23.6 66 0.0014 17.2 1.6 14 83-96 12-25 (81)
447 KOG4163 Prolyl-tRNA synthetase 23.6 87 0.0019 23.3 2.5 31 5-43 463-493 (551)
448 KOG3160 Gamma-interferon induc 23.4 72 0.0016 21.2 2.0 31 27-57 37-68 (220)
449 PLN02182 cytidine deaminase 23.4 44 0.00095 23.7 1.0 14 38-51 129-142 (339)
450 TIGR02451 anti_sig_ChrR anti-s 23.0 93 0.002 20.4 2.4 20 39-58 29-48 (215)
451 PF05626 DUF790: Protein of un 22.8 3E+02 0.0065 20.1 5.0 35 82-116 302-338 (379)
452 PF06279 DUF1033: Protein of u 22.8 63 0.0014 19.3 1.4 27 28-54 56-86 (120)
453 PF06220 zf-U1: U1 zinc finger 22.7 21 0.00045 16.5 -0.5 10 39-48 4-13 (38)
454 COG1570 XseA Exonuclease VII, 22.7 3.3E+02 0.0072 20.3 5.3 73 40-112 142-223 (440)
455 PF10686 DUF2493: Protein of u 22.6 1.4E+02 0.003 15.9 6.2 56 31-86 4-61 (71)
456 COG3741 HutG N-formylglutamate 22.6 2.7E+02 0.0059 19.2 4.6 48 40-89 126-173 (272)
457 PHA02448 hypothetical protein 22.5 1.8E+02 0.0039 17.8 3.3 27 92-118 164-190 (192)
458 COG1062 AdhC Zn-dependent alco 22.5 40 0.00087 24.1 0.7 19 27-46 78-96 (366)
459 PRK01103 formamidopyrimidine/5 22.0 20 0.00044 24.4 -0.8 6 40-45 267-272 (274)
460 COG0678 AHP1 Peroxiredoxin [Po 21.9 92 0.002 19.6 2.1 40 27-67 35-82 (165)
461 PF11317 DUF3119: Protein of u 21.8 1.9E+02 0.0041 17.2 3.7 32 82-113 82-114 (116)
462 PRK13945 formamidopyrimidine-D 21.8 21 0.00045 24.4 -0.8 6 40-45 276-281 (282)
463 PF11551 Omp28: Outer membrane 21.6 31 0.00067 22.1 0.0 22 71-92 8-29 (184)
464 KOG0854 Alkyl hydroperoxide re 21.5 2E+02 0.0044 18.7 3.6 44 26-69 28-75 (224)
465 PRK14810 formamidopyrimidine-D 21.5 22 0.00049 24.2 -0.7 6 40-45 266-271 (272)
466 COG0623 FabI Enoyl-[acyl-carri 21.4 2.8E+02 0.0061 19.0 5.7 60 9-73 11-70 (259)
467 PRK11865 pyruvate ferredoxin o 21.4 1.8E+02 0.0039 20.3 3.6 58 11-69 183-244 (299)
468 COG4097 Predicted ferric reduc 21.2 2.3E+02 0.0049 20.9 4.1 46 29-74 342-387 (438)
469 cd03081 TRX_Fd_NuoE_FDH_gamma 20.9 1.5E+02 0.0033 15.8 3.3 26 82-112 54-79 (80)
470 PRK14434 acylphosphatase; Prov 20.7 1.7E+02 0.0038 16.3 4.5 41 73-115 23-64 (92)
471 PF06858 NOG1: Nucleolar GTP-b 20.7 1.4E+02 0.0031 15.3 4.6 35 29-63 13-50 (58)
472 cd06403 PB1_Par6 The PB1 domai 20.7 1.7E+02 0.0036 16.2 2.7 19 5-23 49-67 (80)
473 PF11726 DUF3296: Protein of u 20.6 1.8E+02 0.0038 18.3 3.3 24 45-68 1-24 (180)
474 PF07351 DUF1480: Protein of u 20.5 1.2E+02 0.0027 16.5 2.1 28 60-87 25-56 (80)
475 PF11525 CopK: Copper resistan 20.5 87 0.0019 16.8 1.5 16 81-96 13-28 (73)
476 PF12249 AftA_C: Arabinofurano 20.3 71 0.0015 20.4 1.4 78 11-88 97-175 (178)
477 TIGR01262 maiA maleylacetoacet 20.3 1.6E+02 0.0034 18.6 3.1 56 36-96 3-63 (210)
478 TIGR01354 cyt_deam_tetra cytid 20.3 71 0.0015 19.0 1.4 26 39-69 81-106 (127)
479 KOG0833 Cytidine deaminase [Nu 20.3 91 0.002 19.9 1.9 17 37-53 101-117 (173)
480 TIGR01917 gly_red_sel_B glycin 20.2 1.5E+02 0.0034 21.9 3.2 29 38-67 343-371 (431)
481 PF02824 TGS: TGS domain; Int 20.0 1.4E+02 0.0031 15.0 3.3 29 88-116 4-32 (60)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=142.70 Aligned_cols=105 Identities=34% Similarity=0.707 Sum_probs=97.7
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
....+.+.++|++.+ ..++.|++|.||++||++|+.+.|.++++..+|. .++|+.+|.|++.+++.+|+|..+||+
T Consensus 43 ~~~~~~s~~~~~~~V---i~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKV---INSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHH---HccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 455666788999999 4789999999999999999999999999999986 499999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 87 MFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 87 ~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
++|+||..+.+..|. +.+.+.++|++.++
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999 89999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-26 Score=132.76 Aligned_cols=102 Identities=54% Similarity=0.913 Sum_probs=90.9
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
+.+..++......+...++++++.||++||++|+.+.|.+.+|+.+|+++.|+.+|.++..++++.+++..+|||+++++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~ 83 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKG 83 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEEC
Confidence 34445666666555566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCHHHHHHHHHHH
Q 033426 92 GKIVDKVVGSKKEELQQTIAKH 113 (119)
Q Consensus 92 g~~~~~~~~~~~~~l~~~l~~~ 113 (119)
|+.+.+..|.+.+++++.+.++
T Consensus 84 g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 84 GEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CEEEEEEecCCHHHHHHHHHhc
Confidence 9999999999988888887654
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.94 E-value=2.1e-25 Score=129.34 Aligned_cols=97 Identities=29% Similarity=0.482 Sum_probs=87.7
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch---hHHhhcCCCcccEEEEEe
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK---SVATDWAVEAMPTFMFLK 90 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~P~~~i~~ 90 (119)
+.++|++.+.. ..+++++|.||++||++|+.+.|.+++++++++++.|+.||.+++. .++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788888853 4699999999999999999999999999999988999999998874 789999999999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHHH
Q 033426 91 EGKIVDKVVGSKKEELQQTIAK 112 (119)
Q Consensus 91 ~g~~~~~~~~~~~~~l~~~l~~ 112 (119)
+|+.+.+..|..++++.+.+.+
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHh
Confidence 9999999999998888887764
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.94 E-value=8.5e-25 Score=126.21 Aligned_cols=97 Identities=41% Similarity=0.710 Sum_probs=91.3
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCC
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEG 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g 92 (119)
+.++|++.+. .++++++|+||++||++|+.+.|.++++++.++ ++.|+.+|+++++.++++|++.++|+++++++|
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 4679999993 358999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred eEEEEEeCC-CHHHHHHHHHHH
Q 033426 93 KIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 93 ~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
+...+..|. +.+.|.++|+++
T Consensus 82 ~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEEESSSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHcC
Confidence 999999999 999999999875
No 5
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.94 E-value=4.3e-25 Score=127.80 Aligned_cols=98 Identities=29% Similarity=0.593 Sum_probs=89.2
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCcccEEEE
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P~~~i 88 (119)
.+++.++|...+ .++++++|+||++||++|+.+.|.+++++++++ .+.|..+|.+ +++++++|+|.++||+++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 467888999987 478999999999999999999999999999986 3789999999 778999999999999999
Q ss_pred EeCCeEEEEEeCCCHHHHHHHHHHH
Q 033426 89 LKEGKIVDKVVGSKKEELQQTIAKH 113 (119)
Q Consensus 89 ~~~g~~~~~~~~~~~~~l~~~l~~~ 113 (119)
|++|+.+.+..|.+.+.+.++|+++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhhC
Confidence 9999999999999999999998763
No 6
>PHA02278 thioredoxin-like protein
Probab=99.94 E-value=3e-25 Score=128.28 Aligned_cols=93 Identities=18% Similarity=0.342 Sum_probs=82.3
Q ss_pred eehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccc----hhHHhhcCCCcccEEE
Q 033426 13 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDEL----KSVATDWAVEAMPTFM 87 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~----~~~~~~~~v~~~P~~~ 87 (119)
++.++|.+.+ .++++++|+||++||++|+.+.|.++++++++. .+.|+.+|.+.+ +.++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4577888888 589999999999999999999999999998753 478999999875 6899999999999999
Q ss_pred EEeCCeEEEEEeCC-CHHHHHHH
Q 033426 88 FLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 88 i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
+|++|+.+.+..|. +.+.+.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 77777654
No 7
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=3e-25 Score=129.54 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=77.9
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.++|++.+.. ..+++++|.||++||++|+.+.|.+++++.++++ +.|+.||.+++++++.+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4678888852 3688999999999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 033426 94 IVDKVVGS 101 (119)
Q Consensus 94 ~~~~~~~~ 101 (119)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99988775
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=1.8e-24 Score=126.88 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=90.4
Q ss_pred ccCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHH-hhcCCC
Q 033426 4 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVA-TDWAVE 81 (119)
Q Consensus 4 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~-~~~~v~ 81 (119)
+.++.+.+++ ..+|.+.+.. ..++++++|.||++||++|+.+.|.++++++.+++ +.|++||++++..++ ++|+|.
T Consensus 6 ~~~~~v~~l~-~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 6 SQRSPVLDFY-KGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCCCeEEec-hhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 3567899996 4688887432 26899999999999999999999999999999875 899999999999998 589999
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 82 AMPTFMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 82 ~~P~~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
++||+++|++|+...++.|. +.+.|..|
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 99999999999888888888 78888776
No 9
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.93 E-value=1.9e-24 Score=127.14 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=85.9
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccE
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
.+.+..|++.++|.+.+ .++++++|+||++||+.|+.+.|.+++++++++++.|+.||.++.+.++++|++.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 46789999989999999 46789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC
Q 033426 86 FMFLKEGKIVDKVVGS 101 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~ 101 (119)
+++|++|+.+.+..|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999887655
No 10
>PTZ00051 thioredoxin; Provisional
Probab=99.92 E-value=3.9e-24 Score=122.78 Aligned_cols=97 Identities=42% Similarity=0.781 Sum_probs=89.6
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
++.++++.+++.+.+ ..+++++++||++||++|+.+.+.+++++++++++.|+.+|.++...++++|++.++|+++
T Consensus 1 ~v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 76 (98)
T PTZ00051 1 MVHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFK 76 (98)
T ss_pred CeEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEE
Confidence 367888888998888 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCHHHHHH
Q 033426 88 FLKEGKIVDKVVGSKKEELQQ 108 (119)
Q Consensus 88 i~~~g~~~~~~~~~~~~~l~~ 108 (119)
++++|+.+.+..|...++|.+
T Consensus 77 ~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 77 VFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EEeCCeEEEEEeCCCHHHhhc
Confidence 999999999999998877754
No 11
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=3e-24 Score=126.00 Aligned_cols=99 Identities=18% Similarity=0.349 Sum_probs=87.2
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
+..+|.+.+.. ...+++++|.||++||++|+.+.|.+++++++++ ++.++.||++..+.++.+|+|.++||+++|++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 34667665532 2478999999999999999999999999999985 58999999999999999999999999999999
Q ss_pred CeEEEEEeCC-CHHHHHHHHHHH
Q 033426 92 GKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 92 g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
|+.+.+..|. +.+.|.++|+++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999997 899999998763
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=3.9e-24 Score=124.07 Aligned_cols=99 Identities=27% Similarity=0.443 Sum_probs=87.7
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
.+.+++ .++|++.+. .++++++|.||++||++|+.+.|.+++++++++ .+.|+.+|+++++.++++|+|.++||+
T Consensus 2 ~v~~l~-~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 2 SVITLT-PEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred cceEcC-HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 566775 679999884 567799999999999999999999999999985 589999999999999999999999999
Q ss_pred EEEeCC-eEEEEEeCC-C-HHHHHHHH
Q 033426 87 MFLKEG-KIVDKVVGS-K-KEELQQTI 110 (119)
Q Consensus 87 ~i~~~g-~~~~~~~~~-~-~~~l~~~l 110 (119)
++|++| +.+.++.|. + .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999887 888888887 6 88888774
No 13
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.92 E-value=3.3e-24 Score=123.62 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=81.0
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc-cchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
++.+.+. ..++++++|.||++||++|+.+.|.+++++++++++.++.+|.+ +++.++++|++.++||+++|++| .+
T Consensus 8 ~~~~~~~--~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 8 IALDLMA--FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 4444444 46899999999999999999999999999999999999999998 78999999999999999999999 77
Q ss_pred EEEeCC-CHHHHHHHH
Q 033426 96 DKVVGS-KKEELQQTI 110 (119)
Q Consensus 96 ~~~~~~-~~~~l~~~l 110 (119)
.++.|. +.+.|.+||
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 788888 888888874
No 14
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=4e-24 Score=123.47 Aligned_cols=97 Identities=19% Similarity=0.363 Sum_probs=86.5
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
.+..++ ..+|++.+ .++++++|+||++||++|+.+.|.+++++++++ .+.|+.||+++++.++++++|.++||+
T Consensus 2 ~~~~l~-~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTLD-RGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEcC-HhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 456674 67999888 456999999999999999999999999999997 489999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 87 MFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 87 ~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
++|++|+.+.++.|. +.+.|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999988888888 78887765
No 15
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=1.6e-23 Score=122.47 Aligned_cols=105 Identities=27% Similarity=0.651 Sum_probs=94.3
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCccc
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
+..+.+++ ..+|.+.+. ..+++++|+||++||++|+.+.|.++++++.++ ++.++.+|++..+.++++|++.++|
T Consensus 2 ~~~v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 77 (109)
T PRK09381 2 SDKIIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 77 (109)
T ss_pred CCcceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCC
Confidence 45677885 478888773 468899999999999999999999999999996 5899999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
++++|++|+.+.+..|. +.++++++|+..+
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999998 8999999998876
No 16
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.92 E-value=1.1e-23 Score=123.90 Aligned_cols=93 Identities=26% Similarity=0.491 Sum_probs=83.8
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccE
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
.+.+.++++ .+|.+.+... ..+++++|+||++||++|+.+.|.+++++.+++++.|+.||.+++ .++++|+|.++||
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 467888987 8999998532 125899999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCeEEEEEeCC
Q 033426 86 FMFLKEGKIVDKVVGS 101 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~ 101 (119)
+++|++|+.+.+..|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999998875
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.5e-24 Score=141.65 Aligned_cols=109 Identities=29% Similarity=0.539 Sum_probs=99.4
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCccc
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
...|.++| ..+|.+.+..+ .+.+|++|+||+|||++|+.+.|.++++..+|.+ +.+.+||+|.++.++.+|||.++|
T Consensus 22 a~~I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIP 99 (304)
T COG3118 22 APGIKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIP 99 (304)
T ss_pred cccceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCC
Confidence 34488886 47999988874 5777999999999999999999999999999974 999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+++.|++|+.+..+.|. ..+.+++||++++..
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999 678999999999865
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=9.2e-24 Score=120.82 Aligned_cols=93 Identities=31% Similarity=0.522 Sum_probs=83.6
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
+|++.+.. ..+++++|+||++||++|+.+.+.+++++..++ .+.++.+|+++++.++++|++.++|+++++++|+.+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 56667742 358899999999999999999999999999986 488999999999999999999999999999999999
Q ss_pred EEEeCC-CHHHHHHHHH
Q 033426 96 DKVVGS-KKEELQQTIA 111 (119)
Q Consensus 96 ~~~~~~-~~~~l~~~l~ 111 (119)
.+..|. +.++|..+|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999998 7899988874
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.7e-24 Score=136.93 Aligned_cols=110 Identities=44% Similarity=0.784 Sum_probs=103.5
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
+|+.+++..+|+..+.. .-.+.++|.|+++||++|++..|.|+.++++|++..|..||.++...++..+||+.+|||+
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 58899999999999964 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCHHHHHHHHHHHhhhhcC
Q 033426 88 FLKEGKIVDKVVGSKKEELQQTIAKHLATASA 119 (119)
Q Consensus 88 i~~~g~~~~~~~~~~~~~l~~~l~~~~~~~~~ 119 (119)
+|+||..+....|.++.-|++.+.+++..+++
T Consensus 80 ff~ng~kid~~qGAd~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGADASGLEEKVAKYASTSAA 111 (288)
T ss_pred EEecCeEeeeecCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999877653
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.92 E-value=3.2e-23 Score=126.01 Aligned_cols=104 Identities=33% Similarity=0.679 Sum_probs=92.7
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCccc
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
++.+.++ +..+|++.+ .++++++|+||++||++|+.+.+.++++++++. ++.|+.+|.++++.++++|+|.++|
T Consensus 34 ~~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP 108 (139)
T ss_pred CCCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccC
Confidence 3455565 457888877 468999999999999999999999999998875 6999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
++++|++|+.+.+..|. +.+.+.++|++++
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999998 8899999998764
No 21
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=2.8e-23 Score=125.40 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=94.8
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
-+.++.+..+|++.+.. ..+++++|.||++||++|+.+.|.++++++++++ +.|+.||.|++++++..|+|.+.|++
T Consensus 4 ~l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~ 81 (142)
T PLN00410 4 LLPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTV 81 (142)
T ss_pred hHhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcE
Confidence 45678889999999964 4789999999999999999999999999999987 88899999999999999999977765
Q ss_pred E-EEeCCe-EEEEEeC--------C-CHHHHHHHHHHHhhhh
Q 033426 87 M-FLKEGK-IVDKVVG--------S-KKEELQQTIAKHLATA 117 (119)
Q Consensus 87 ~-i~~~g~-~~~~~~~--------~-~~~~l~~~l~~~~~~~ 117 (119)
+ +|++|+ .+.+..| . +.++|.+.++..+..+
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred EEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 5 889998 8889988 4 6788999888877544
No 22
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.91 E-value=2.6e-23 Score=119.07 Aligned_cols=94 Identities=36% Similarity=0.787 Sum_probs=85.6
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHh-CCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.++|++.+... .+++++|.||++||+.|+.+.+.+++++++ .+++.++.+|.++.++++++|++.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 56888888643 379999999999999999999999999999 568999999999999999999999999999999999
Q ss_pred EEEEEeCCCHHHHHHHH
Q 033426 94 IVDKVVGSKKEELQQTI 110 (119)
Q Consensus 94 ~~~~~~~~~~~~l~~~l 110 (119)
.+.+..|.+.++|.+.|
T Consensus 80 ~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEeCCCHHHHHHhh
Confidence 99999999988888776
No 23
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=1.9e-23 Score=123.44 Aligned_cols=103 Identities=15% Similarity=0.237 Sum_probs=91.8
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHh--HH--hhhHHHHHHHHhC--C-CeEEEEEeCccchhHHhhcC
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGP--CR--FIAPFLAELAKKL--P-NVLFLKVDVDELKSVATDWA 79 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~--C~--~~~~~~~~l~~~~--~-~v~~~~vd~~~~~~~~~~~~ 79 (119)
..+..++ .++|++.+. .++.++|++||++||++ |+ .+.|.+.++++++ . ++.|+.||++++++++++|+
T Consensus 9 ~~v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~ 84 (120)
T cd03065 9 DRVIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLG 84 (120)
T ss_pred cceeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcC
Confidence 3566775 589999994 67889999999999976 99 8889999999987 4 69999999999999999999
Q ss_pred CCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 80 VEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 80 v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
|.++||+++|++|+.+. +.|. +.+.|.++|++++
T Consensus 85 I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 LDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999887 7788 8999999999875
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=3.7e-23 Score=120.78 Aligned_cols=99 Identities=25% Similarity=0.545 Sum_probs=84.6
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC----C---CeEEEEEeCccchhHHhhcC
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL----P---NVLFLKVDVDELKSVATDWA 79 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~----~---~v~~~~vd~~~~~~~~~~~~ 79 (119)
+.+..++ .++|++.+ ..+++++|.||++||++|+.+.|.++++++.+ + .+.++.+|+++++.++++|+
T Consensus 1 ~~v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~ 75 (108)
T cd02996 1 SEIVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR 75 (108)
T ss_pred CceEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC
Confidence 3567775 57999877 46789999999999999999999999998764 2 38899999999999999999
Q ss_pred CCcccEEEEEeCCeE-EEEEeCC-CHHHHHHHH
Q 033426 80 VEAMPTFMFLKEGKI-VDKVVGS-KKEELQQTI 110 (119)
Q Consensus 80 v~~~P~~~i~~~g~~-~~~~~~~-~~~~l~~~l 110 (119)
|.++|++++|++|+. .....|. +.+.|.+||
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999999984 4666677 788888775
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=9.7e-23 Score=117.61 Aligned_cols=98 Identities=27% Similarity=0.476 Sum_probs=84.7
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCccc
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
+.+.+++ .++|++.+ +++ ++|.||++||++|+.+.|.+++++..+. ++.+..+|+++++.++++|++.++|
T Consensus 1 ~~v~~l~-~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 73 (101)
T cd02994 1 SNVVELT-DSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALP 73 (101)
T ss_pred CceEEcC-hhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccC
Confidence 3577885 67999876 233 6899999999999999999999998875 5899999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAK 112 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~ 112 (119)
|++++++|+. .++.|. +.++|.++|++
T Consensus 74 t~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 9999999985 667787 88999998863
No 26
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.90 E-value=1.1e-22 Score=127.65 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=85.1
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCccc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
.-+.+.+|++..+|.+.+..+ ..+.++||+||++||+.|+.+.|.+++++.+|+.+.|+.||.+.. .++.+|++..+|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCC
Confidence 357889998878999998542 235699999999999999999999999999999999999999987 899999999999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 033426 85 TFMFLKEGKIVDKVVGS 101 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~ 101 (119)
|+++|++|+.+.+..|.
T Consensus 138 Tlllyk~G~~v~~~vG~ 154 (175)
T cd02987 138 ALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEEECCEEEEEEech
Confidence 99999999999988765
No 27
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.90 E-value=2.5e-22 Score=130.05 Aligned_cols=111 Identities=25% Similarity=0.406 Sum_probs=97.5
Q ss_pred CCceeeeeehHhHHHHHhhc-hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcc
Q 033426 6 EGQVIGCHTVEAWNEQLQKS-NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAM 83 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~ 83 (119)
.+.+..++ .++|++.+... ...+++++|+||++||++|+.+.|.++++++++++ +.+..+|+++++.++++|+|.++
T Consensus 29 ~~~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC
Confidence 46688885 67999988543 12478999999999999999999999999999974 88999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
||+++|++|+.+.+..|. +.+++.+|+.+.++..
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999888886 8999999999887644
No 28
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=1.5e-22 Score=117.48 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=84.3
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCC--CHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASW--CGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~--C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
..++ +..+|++.+ ..+.++++.||++| |+.|+.+.|.++++++++++ +.|+.+|.++++.++.+|+|.++||
T Consensus 12 ~~~~-~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 12 WPRV-DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred Cccc-ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 4455 357888777 57899999999997 99999999999999999986 8899999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCC-CHHHHH
Q 033426 86 FMFLKEGKIVDKVVGS-KKEELQ 107 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~-~~~~l~ 107 (119)
+++|++|+.+.+..|. +.+++.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 9999999999999998 777664
No 29
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=4.7e-22 Score=114.24 Aligned_cols=97 Identities=42% Similarity=0.811 Sum_probs=87.2
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.+++.+.+. ..+++++|+||++||+.|+.+.+.++++++.++ ++.|+.+|.++++.++++|++.++|+++++++|+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 457777773 457899999999999999999999999998886 5999999999999999999999999999999999
Q ss_pred EEEEEeCC-CHHHHHHHHHHHh
Q 033426 94 IVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 94 ~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.+.+..|. +.+.+.++|++.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 99888888 7899999998753
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=1.9e-22 Score=117.71 Aligned_cols=99 Identities=26% Similarity=0.479 Sum_probs=84.9
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCcc--chhHHhhcCCCcccE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDE--LKSVATDWAVEAMPT 85 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~P~ 85 (119)
+.+++ .++|++.+. ..+++++|.||++||++|+.+.|.++++++.++ .+.++.+|++. ++.++++|++.++|+
T Consensus 2 v~~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 2 VYELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred eEEcc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCE
Confidence 56675 578999884 568899999999999999999999999999986 48899999988 889999999999999
Q ss_pred EEEEeCCe-----EEEEEeCC-CHHHHHHHHH
Q 033426 86 FMFLKEGK-----IVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 86 ~~i~~~g~-----~~~~~~~~-~~~~l~~~l~ 111 (119)
+++|++|+ ....+.|. +.+.|.+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99998775 44566677 7899988873
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=2.6e-22 Score=115.79 Aligned_cols=96 Identities=29% Similarity=0.604 Sum_probs=83.6
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCCccc
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
++.++ .++|++.+. .+ +++|.||++||++|+.+.|.++++++++. .+.++.+|+++++.++++|++.++|
T Consensus 2 ~~~l~-~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 75 (102)
T cd03005 2 VLELT-EDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYP 75 (102)
T ss_pred eeECC-HHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCC
Confidence 45665 568998883 33 59999999999999999999999998874 4899999999999999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
++++|++|+.+.++.|. +.+.|.+||
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999988888888 788887764
No 32
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=9.4e-22 Score=119.89 Aligned_cols=96 Identities=29% Similarity=0.517 Sum_probs=83.4
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccc--hhHHhhcCCCcccEEEEE-eCC
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDEL--KSVATDWAVEAMPTFMFL-KEG 92 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~--~~~~~~~~v~~~P~~~i~-~~g 92 (119)
+++..+ .+++++||+||++||++|+.+.|.++++++++. .+.|+.||.+.. ..++.+|+|.++|++++| ++|
T Consensus 12 ~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 444444 689999999999999999999999999999986 478888887754 578999999999999999 589
Q ss_pred eEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 93 KIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 93 ~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+++.+..|. +.++|.++|+++++.
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999999 689999999998754
No 33
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.88 E-value=2.1e-21 Score=112.70 Aligned_cols=98 Identities=16% Similarity=0.307 Sum_probs=81.8
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
..+|++.+..+ .+++++|.|+++||++|+.+.|.++++++++++ +.|+.||.++.+++++.|++...||+++|++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 35788888643 799999999999999999999999999999998 999999999999999999999999999999987
Q ss_pred EEEEEeCC-----------CHHHHHHHHHHHh
Q 033426 94 IVDKVVGS-----------KKEELQQTIAKHL 114 (119)
Q Consensus 94 ~~~~~~~~-----------~~~~l~~~l~~~~ 114 (119)
-+.--.|. +.+++...++...
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 66532222 3466666655443
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=2.6e-21 Score=118.73 Aligned_cols=92 Identities=26% Similarity=0.473 Sum_probs=81.8
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCc-
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEA- 82 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~- 82 (119)
...+..++ .++|++.+.. ..+++++|.||++||++|+.+.|.+++++++++ ++.|+.||.+++++++++|+|.+
T Consensus 27 ~~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 27 PEHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 35667775 5789888743 357899999999999999999999999999985 49999999999999999999988
Q ss_pred -----ccEEEEEeCCeEEEEEeC
Q 033426 83 -----MPTFMFLKEGKIVDKVVG 100 (119)
Q Consensus 83 -----~P~~~i~~~g~~~~~~~~ 100 (119)
+||+++|++|+.+.+..|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 999999999999999997
No 35
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.88 E-value=2.6e-21 Score=110.93 Aligned_cols=91 Identities=29% Similarity=0.596 Sum_probs=82.2
Q ss_pred HHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 18 WNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
+++.+ ...+++++++||++||+.|+.+.+.+++++++++ ++.++.+|.++.+++..++++.++|+++++++|+++.
T Consensus 5 ~~~~~---~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 5 LRKLY---HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred HHHHH---HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 45556 3589999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred EEeCC-CHHHHHHHHH
Q 033426 97 KVVGS-KKEELQQTIA 111 (119)
Q Consensus 97 ~~~~~-~~~~l~~~l~ 111 (119)
+..|. +.+++.++|+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 99998 7888888763
No 36
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=2.1e-21 Score=112.33 Aligned_cols=97 Identities=27% Similarity=0.565 Sum_probs=84.3
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCcc--chhHHhhcCCCcc
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDE--LKSVATDWAVEAM 83 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~--~~~~~~~~~v~~~ 83 (119)
+.+++ ..+++..+ .++++++|.||++||++|+.+.+.++++++.++ .+.++.+|++. ++.+++++++.++
T Consensus 2 ~~~l~-~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHLT-DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEec-hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 55665 46888887 457799999999999999999999999998874 48888999988 8999999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
|++++|++|+.+.+..|. +.+.+.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999988888888 788887764
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=1.5e-21 Score=112.42 Aligned_cols=96 Identities=28% Similarity=0.552 Sum_probs=84.9
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
..+|++.+ .++++++|+||++||+.|+.+.+.++++++.+. ++.++.+|++.++.++++|++.++|+++++++
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 46788877 379999999999999999999999999999886 49999999999999999999999999999987
Q ss_pred CeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 92 GKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 92 g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
|..+..+.|. +.++|..+|++++
T Consensus 79 ~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 79 GKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CCcceeecCCCCHHHHHHHHHhcC
Confidence 7656677777 8899999998753
No 38
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.87 E-value=4.3e-21 Score=112.86 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=79.0
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE--EEeCC-CH
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD--KVVGS-KK 103 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~--~~~~~-~~ 103 (119)
..+..++|+||++||++|+.+.+.+++++..++.+.+..+|.++++.++.+|++.++|+++++++|.... ++.|. +.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 4677889999999999999999999999998888999999999999999999999999999998765443 56677 78
Q ss_pred HHHHHHHHHHhh
Q 033426 104 EELQQTIAKHLA 115 (119)
Q Consensus 104 ~~l~~~l~~~~~ 115 (119)
.++.++|..++.
T Consensus 100 ~el~~~i~~i~~ 111 (113)
T cd02975 100 YEFASLIEDIVR 111 (113)
T ss_pred HHHHHHHHHHHh
Confidence 899999988765
No 39
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=5e-21 Score=110.56 Aligned_cols=98 Identities=24% Similarity=0.449 Sum_probs=83.6
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
+.+++ ..++.+.+. .++++++|+||++||++|+.+.+.+.+++++++ .+.++.+|+++++.++++|++.++|+++
T Consensus 2 v~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 2 VVELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred eEEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEE
Confidence 45664 568888884 457789999999999999999999999999885 5899999999999999999999999999
Q ss_pred EEeCC-eEEEEEeCC-CHHHHHHHH
Q 033426 88 FLKEG-KIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 88 i~~~g-~~~~~~~~~-~~~~l~~~l 110 (119)
+|++| +....+.|. +.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99888 445556666 888888876
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.87 E-value=1.1e-21 Score=113.80 Aligned_cols=92 Identities=24% Similarity=0.469 Sum_probs=79.0
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCC-CeEEEEEeCcc----chhHHhhcCCCcccEEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLP-NVLFLKVDVDE----LKSVATDWAVEAMPTFM 87 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~-~v~~~~vd~~~----~~~~~~~~~v~~~P~~~ 87 (119)
+.|.+.+ .++++++|+||++||++|+.+.+.+ .++++.+. ++.++.+|.++ ...++++|++.++|+++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 3455555 6899999999999999999999887 57777776 79999999876 57889999999999999
Q ss_pred EEe--CCeEEEEEeCC-CHHHHHHHHH
Q 033426 88 FLK--EGKIVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 88 i~~--~g~~~~~~~~~-~~~~l~~~l~ 111 (119)
+|+ +|+.+.+..|. +.++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHhC
Confidence 997 79999999998 8999888763
No 41
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.86 E-value=1.5e-20 Score=119.53 Aligned_cols=103 Identities=22% Similarity=0.438 Sum_probs=86.7
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCccc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
.-+.+.+|+ ..+|...+..+ .++.++||+||++||+.|+.+.+.|++|+.+|+.+.|+.||.+.. ...|++..+|
T Consensus 80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCC
Confidence 357889996 57888877543 345799999999999999999999999999999999999999864 5899999999
Q ss_pred EEEEEeCCeEEEEEeCC--------CHHHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGS--------KKEELQQTIAK 112 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~--------~~~~l~~~l~~ 112 (119)
|+++|++|+.+.+..|. +.+.|+.+|.+
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999988874 35666666543
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.86 E-value=2e-20 Score=111.29 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=77.5
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----------hHHhhc
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----------SVATDW 78 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----------~~~~~~ 78 (119)
..+ +.+++.+.+ ..++..+|+|+++|||+|+.+.|.|++++++. ++.++.+|.+.+. ++.+.|
T Consensus 9 ~~i-t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 9 EVT-TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred eec-CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 344 356788888 57889999999999999999999999999984 5677778777432 445666
Q ss_pred C----CCcccEEEEEeCCeEEEEEeCC--CHHHHHHHHH
Q 033426 79 A----VEAMPTFMFLKEGKIVDKVVGS--KKEELQQTIA 111 (119)
Q Consensus 79 ~----v~~~P~~~i~~~g~~~~~~~~~--~~~~l~~~l~ 111 (119)
+ +.++||++++++|+.+.+..|. +.++|.+++.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5 5569999999999999999984 6899988864
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.86 E-value=9e-21 Score=109.58 Aligned_cols=98 Identities=32% Similarity=0.572 Sum_probs=82.3
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC---eEEEEEeCccchhHHhhcCCCccc
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN---VLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~---v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
+|..++ .++|++.+. ..+++++|+||++||++|+.+.+.++++++.+++ +.++.+|++.+ +++..+++.++|
T Consensus 1 ~v~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~P 75 (104)
T cd02995 1 PVKVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFP 75 (104)
T ss_pred CeEEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCC
Confidence 356675 578988884 4578999999999999999999999999998754 89999999987 578899999999
Q ss_pred EEEEEeCCe--EEEEEeCC-CHHHHHHHH
Q 033426 85 TFMFLKEGK--IVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 85 ~~~i~~~g~--~~~~~~~~-~~~~l~~~l 110 (119)
++++|++|+ ...++.|. +.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998876 55566677 788888774
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.86 E-value=1.2e-20 Score=109.50 Aligned_cols=85 Identities=27% Similarity=0.527 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-C
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-K 102 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~ 102 (119)
++++++|.||++||++|+.+.|.++++++++. ++.+..+|+++.+.++++|++.++|++++|++|.. ..+.|. +
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~~~ 92 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA-YNYRGPRT 92 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc-eeecCCCC
Confidence 57899999999999999999999999999873 38899999999999999999999999999987754 556677 8
Q ss_pred HHHHHHHHHHH
Q 033426 103 KEELQQTIAKH 113 (119)
Q Consensus 103 ~~~l~~~l~~~ 113 (119)
.+.+.+++++.
T Consensus 93 ~~~l~~~~~~~ 103 (104)
T cd03000 93 KDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 89999998874
No 45
>PTZ00062 glutaredoxin; Provisional
Probab=99.86 E-value=1.4e-20 Score=120.22 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
.++.+++.+.+. ...+.++++||++||+.|+.+.+.+.+++++|+++.|+.||.+ |+|.++|+|++|++
T Consensus 3 ~~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 3 FIKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQN 71 (204)
T ss_pred CCCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEEC
Confidence 346778888883 2347789999999999999999999999999999999999987 99999999999999
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHhhhh
Q 033426 92 GKIVDKVVGSKKEELQQTIAKHLATA 117 (119)
Q Consensus 92 g~~~~~~~~~~~~~l~~~l~~~~~~~ 117 (119)
|+.+.+..|.++.++..++.++...+
T Consensus 72 g~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 72 SQLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred CEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999998887643
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=1.3e-20 Score=109.06 Aligned_cols=98 Identities=32% Similarity=0.576 Sum_probs=83.0
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCcc-chhHHhhcCCCccc
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDE-LKSVATDWAVEAMP 84 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~-~~~~~~~~~v~~~P 84 (119)
+..++ .+++++.+ ...+++++++||++||++|+.+.+.++++++.++ ++.++.+|++. ++.++++|++.++|
T Consensus 2 ~~~l~-~~~~~~~~---~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVELT-DSNFDKVV---GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEcc-hhcHHHHh---cCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 45664 47888877 3457799999999999999999999999999875 58999999999 99999999999999
Q ss_pred EEEEEeCC-eEEEEEeCC-CHHHHHHHH
Q 033426 85 TFMFLKEG-KIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 85 ~~~i~~~g-~~~~~~~~~-~~~~l~~~l 110 (119)
++++|++| +....+.|. +.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 99999765 566667676 788888774
No 47
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.85 E-value=5.1e-20 Score=103.64 Aligned_cols=90 Identities=51% Similarity=0.942 Sum_probs=81.0
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
+|.+.+ ..+++++|+||++||+.|+.+.+.+++++...+++.++.+|.+.+..+++.|++.++|+++++++|+.+.
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 455666 3459999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred EEeCC-CHHHHHHHH
Q 033426 97 KVVGS-KKEELQQTI 110 (119)
Q Consensus 97 ~~~~~-~~~~l~~~l 110 (119)
...|. +.+.|.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 99988 678888876
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=3e-20 Score=106.30 Aligned_cols=92 Identities=32% Similarity=0.561 Sum_probs=80.5
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC---CCeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL---PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~---~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
..+|.+.+ .++++++|+||++||+.|+.+.+.++++++.+ .++.|+.+|+++++.++++|++.++|+++++++
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 45788888 45569999999999999999999999999888 469999999999999999999999999999976
Q ss_pred C-eEEEEEeCC-CHHHHHHHH
Q 033426 92 G-KIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 92 g-~~~~~~~~~-~~~~l~~~l 110 (119)
| +...+..|. +.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 777777777 788887764
No 49
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=5.2e-20 Score=107.66 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=81.4
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-chhHHh-hcCCCcc
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-LKSVAT-DWAVEAM 83 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-~~~~~~-~~~v~~~ 83 (119)
.|.+++ .++|+..+.. ..++++++|.||++||++|+.+.|.++++++.+. ++.+..||++. ...++. .|++.++
T Consensus 2 ~v~~~~-~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLS-RAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceecc-HHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcC
Confidence 466775 5688888754 2578999999999999999999999999999886 48899999987 566776 5999999
Q ss_pred cEEEEEeCC-eEEEEEeCC--CHHHHHHHH
Q 033426 84 PTFMFLKEG-KIVDKVVGS--KKEELQQTI 110 (119)
Q Consensus 84 P~~~i~~~g-~~~~~~~~~--~~~~l~~~l 110 (119)
||+++|++| +....+.|. +.+.|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999654 455566663 788887764
No 50
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=6.3e-20 Score=109.62 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=77.2
Q ss_pred hchhCC-CeEEEEEeCCCCHhHHhhhHHHH---HHHHhCC-CeEEEEEeCccc-------------hhHHhhcCCCcccE
Q 033426 24 KSNETK-QLVVVDFTASWCGPCRFIAPFLA---ELAKKLP-NVLFLKVDVDEL-------------KSVATDWAVEAMPT 85 (119)
Q Consensus 24 ~~~~~~-~~~vv~f~~~~C~~C~~~~~~~~---~l~~~~~-~v~~~~vd~~~~-------------~~~~~~~~v~~~P~ 85 (119)
.+..++ ++++|+||++||++|+.+.+.+. .+.+.+. ++.++.+|.+.. ..++.+|++.++|+
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 334678 99999999999999999998774 4555543 578888988754 67899999999999
Q ss_pred EEEEe-C-CeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 86 FMFLK-E-GKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 86 ~~i~~-~-g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
++++. + |+++.+..|. +.+++.++|+.++..
T Consensus 88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 88 VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 88885 5 6999999998 789999999988764
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.9e-20 Score=131.46 Aligned_cols=108 Identities=27% Similarity=0.522 Sum_probs=96.1
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCC
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVE 81 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~ 81 (119)
...|..++ .++|...+ ..+..++|.||+|||++|+++.|.+++.+.... .+.+..||++.+..++.+|+|.
T Consensus 24 ~~~Vl~Lt-~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVLT-KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred ccceEEEe-cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 56788886 58999999 689999999999999999999999999888763 5999999999999999999999
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhhc
Q 033426 82 AMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATAS 118 (119)
Q Consensus 82 ~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~~ 118 (119)
++||+.+|+||+....+.|. ..+.|..||.+....++
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred CCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999999976666677 89999999999876553
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.81 E-value=8.1e-19 Score=124.87 Aligned_cols=105 Identities=27% Similarity=0.493 Sum_probs=91.2
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC----CCeEEEEEeCccchhHHhhcCCCc
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL----PNVLFLKVDVDELKSVATDWAVEA 82 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~----~~v~~~~vd~~~~~~~~~~~~v~~ 82 (119)
..+..++ ..+|...+ .++++++|.||++||++|+++.|.+.+++..+ +++.++.+|++++..++++|++.+
T Consensus 32 ~~v~~l~-~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLT-DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG 106 (477)
T ss_pred CCcEEcc-hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc
Confidence 4566774 56888888 46789999999999999999999999987665 359999999999999999999999
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 83 MPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 83 ~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
+||+++|++|+.+ ++.|. +.+.|.+|+++.+..+
T Consensus 107 ~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 107 YPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred ccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 9999999999877 67777 8999999999987643
No 53
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.81 E-value=8.3e-19 Score=103.45 Aligned_cols=98 Identities=19% Similarity=0.328 Sum_probs=78.5
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeC-------CCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCcc-------chhHH
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTA-------SWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDE-------LKSVA 75 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~-------~~~~~ 75 (119)
.+++.++|.+.+.. .++++++|.||+ +||++|+.+.|.++++.++++ ++.|+.||.++ +..+.
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 45677888888853 357999999999 999999999999999999998 69999999976 46899
Q ss_pred hhcCCC-cccEEEEEeCCeEEEEEeCCCHHHHHHHH
Q 033426 76 TDWAVE-AMPTFMFLKEGKIVDKVVGSKKEELQQTI 110 (119)
Q Consensus 76 ~~~~v~-~~P~~~i~~~g~~~~~~~~~~~~~l~~~l 110 (119)
..|++. ++||+++|++|+.+....-.+...+..|+
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999998 99999999877544433222455555443
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.80 E-value=4.1e-19 Score=104.62 Aligned_cols=82 Identities=32% Similarity=0.512 Sum_probs=70.4
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCc--cchhHHhhcCCC
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVD--ELKSVATDWAVE 81 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~--~~~~~~~~~~v~ 81 (119)
++.+++ .++|++.+. ..+++++|.||++||++|+.+.+.+++++..++ .+.|..+|++ .+..++++|++.
T Consensus 2 ~v~~l~-~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 2 PVIVLD-AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred CeEECC-HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 567775 679999985 456899999999999999999999999998764 3888899974 467899999999
Q ss_pred cccEEEEEeCCe
Q 033426 82 AMPTFMFLKEGK 93 (119)
Q Consensus 82 ~~P~~~i~~~g~ 93 (119)
++|++++|++|.
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999998876
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.80 E-value=1.5e-18 Score=122.79 Aligned_cols=104 Identities=25% Similarity=0.526 Sum_probs=90.5
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCCcc
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVEAM 83 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~ 83 (119)
.+..++ ..+|...+ .++++++|.||++||++|+.+.|.+.++++.+. ++.|+.||++.+..++++|+|.++
T Consensus 2 ~v~~l~-~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLT-KDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76 (462)
T ss_pred CceECC-HHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccc
Confidence 355664 57888888 468899999999999999999999999887753 499999999999999999999999
Q ss_pred cEEEEEeCCeE-EEEEeCC-CHHHHHHHHHHHhhh
Q 033426 84 PTFMFLKEGKI-VDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 84 P~~~i~~~g~~-~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
||+++|++|+. +..+.|. +.+.+.+|+.+.+..
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCC
Confidence 99999999987 6677777 899999999988753
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.80 E-value=2.4e-18 Score=121.16 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=86.5
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccch-hHH-hhcCC
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELK-SVA-TDWAV 80 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~-~~~-~~~~v 80 (119)
.+..|.+++ .++|++.+.. ...++++||.||++||++|+.+.|.|+++++++. ++.|+.||++.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~-~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLS-RPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECC-HHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 456788886 4689998853 2589999999999999999999999999999986 4889999998653 344 68999
Q ss_pred CcccEEEEEeCCe--EEEEEeCC-CHHHHHHHHHHH
Q 033426 81 EAMPTFMFLKEGK--IVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 81 ~~~P~~~i~~~g~--~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.++||+++|++|+ .+.+..|. +.+.|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999998874 23332344 899999998764
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.79 E-value=2.9e-18 Score=120.71 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=87.5
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc-cchhHHh-hcCC
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD-ELKSVAT-DWAV 80 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~-~~~~~~~-~~~v 80 (119)
.+..|.+++ .++|++.+... .++++++|.||++||++|+.+.|.|+++++++. ++.|+.+|++ .+..++. +|+|
T Consensus 343 ~~~~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 345777775 57888887542 589999999999999999999999999999985 4999999999 7777775 6999
Q ss_pred CcccEEEEEeCCe--EEEEEeCC-CHHHHHHHHHHH
Q 033426 81 EAMPTFMFLKEGK--IVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 81 ~~~P~~~i~~~g~--~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.++||+++|++|. .+.+..+. +.+.|..||+.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999997664 33333334 899999999875
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=2.4e-18 Score=122.41 Aligned_cols=107 Identities=22% Similarity=0.452 Sum_probs=91.3
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccchhHHhhcCCCc
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDELKSVATDWAVEA 82 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~ 82 (119)
.+.+..+. .++|++.+ ..++++++|+||++||++|+.+.|.+++++..++ .+.++.+|.+.+...+.+|++.+
T Consensus 356 ~~~v~~l~-~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVV-GNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA 431 (477)
T ss_pred CCCeEEec-ccchHHHH---hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc
Confidence 44566674 57899887 3678999999999999999999999999998875 48899999999988999999999
Q ss_pred ccEEEEEeCCeE-EEEEeCC-CHHHHHHHHHHHhhh
Q 033426 83 MPTFMFLKEGKI-VDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 83 ~P~~~i~~~g~~-~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+||+++|++|+. ..++.|. +.+.+.++|+++...
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 999999976654 3467787 899999999998764
No 59
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.79 E-value=3e-18 Score=124.17 Aligned_cols=107 Identities=19% Similarity=0.437 Sum_probs=91.7
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCCCeEEEEEeCcc----chhHHhhcCC
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLPNVLFLKVDVDE----LKSVATDWAV 80 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v 80 (119)
....+++.+++++.+..+..++|+++|+||++||++|+.+.+.. .++.++++++.++++|.++ +.++.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 45678888999999988777899999999999999999998875 6778888889999999875 3578899999
Q ss_pred CcccEEEEEe-CCeEE--EEEeCC-CHHHHHHHHHHHh
Q 033426 81 EAMPTFMFLK-EGKIV--DKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 81 ~~~P~~~i~~-~g~~~--~~~~~~-~~~~l~~~l~~~~ 114 (119)
.++|++++|+ +|+++ .+..|. +.+++.++|++..
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999995 89884 677887 8999999998753
No 60
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.77 E-value=9.1e-18 Score=93.19 Aligned_cols=79 Identities=28% Similarity=0.452 Sum_probs=69.2
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
.+..||++||++|+.+.+.+++++++++ .+.+..||.+++++++++|++.++|++++ +|+. +..|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999999885 58899999999999999999999999876 7763 56677 89999999
Q ss_pred HHHHh
Q 033426 110 IAKHL 114 (119)
Q Consensus 110 l~~~~ 114 (119)
|++.+
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 88753
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.77 E-value=1.3e-18 Score=102.80 Aligned_cols=99 Identities=15% Similarity=0.425 Sum_probs=75.2
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccch-hHHhhcCCCc--ccEEEEEe-C
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELK-SVATDWAVEA--MPTFMFLK-E 91 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~-~~~~~~~v~~--~P~~~i~~-~ 91 (119)
++++.+..+..++++++|.||++||++|+.+.+.+.+...... ...|+.++.+... .....|++.+ +|+++++. +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 5777777777899999999999999999999999998766542 4566667766543 4567888876 99999994 9
Q ss_pred CeEEEE---EeCC-CHHHHHHHHHHHhh
Q 033426 92 GKIVDK---VVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 92 g~~~~~---~~~~-~~~~l~~~l~~~~~ 115 (119)
|+++.+ ..|. +.+.+...|+..++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 998774 3344 56666666666554
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=7e-18 Score=98.85 Aligned_cols=97 Identities=11% Similarity=0.199 Sum_probs=77.6
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeC--CCCH---hHHhhhHHHHHHHHhCCCeEEEEEeC-----ccchhHHhhc
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTA--SWCG---PCRFIAPFLAELAKKLPNVLFLKVDV-----DELKSVATDW 78 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~---~C~~~~~~~~~l~~~~~~v~~~~vd~-----~~~~~~~~~~ 78 (119)
+..++ .++|++.+ .+++.++|.||+ |||+ +|+.+.+.+.+-+.. +.+..||+ .++.+++++|
T Consensus 3 ~v~L~-~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDLD-TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeECC-hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHh
Confidence 45664 57999988 578999999999 8998 777777777665543 88999999 4578899999
Q ss_pred CCC--cccEEEEEeCCe--EEEEEeC--CCHHHHHHHHHHH
Q 033426 79 AVE--AMPTFMFLKEGK--IVDKVVG--SKKEELQQTIAKH 113 (119)
Q Consensus 79 ~v~--~~P~~~i~~~g~--~~~~~~~--~~~~~l~~~l~~~ 113 (119)
+|. ++||+++|++|. ....+.| .+.+.|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999884 2234445 4799999999875
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=3.5e-17 Score=106.03 Aligned_cols=88 Identities=27% Similarity=0.385 Sum_probs=75.7
Q ss_pred CCCeEEEEEeC---CCCHhHHhhhHHHHHHHHhCCCeE--EEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE-EEeCC
Q 033426 28 TKQLVVVDFTA---SWCGPCRFIAPFLAELAKKLPNVL--FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD-KVVGS 101 (119)
Q Consensus 28 ~~~~~vv~f~~---~~C~~C~~~~~~~~~l~~~~~~v~--~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~-~~~~~ 101 (119)
.+...++.|++ +||++|+.+.|.+++++++++++. ++.+|.+++++++++|+|.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45566777887 999999999999999999997654 5666667999999999999999999999999874 78888
Q ss_pred -CHHHHHHHHHHHhh
Q 033426 102 -KKEELQQTIAKHLA 115 (119)
Q Consensus 102 -~~~~l~~~l~~~~~ 115 (119)
+.+++.++|+.++.
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 78899999998864
No 64
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=1e-17 Score=96.70 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCC--cccEEEEEeC--CeEEEEEeCC-
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVE--AMPTFMFLKE--GKIVDKVVGS- 101 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~--~~P~~~i~~~--g~~~~~~~~~- 101 (119)
.++++++.|+++||+.|+.+.+.++++++++. .+.|+.+|.++++.++..|++. ++|+++++++ |+......+.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 47899999999999999999999999999996 5999999999999999999999 9999999987 7666666666
Q ss_pred CHHHHHHHHHHH
Q 033426 102 KKEELQQTIAKH 113 (119)
Q Consensus 102 ~~~~l~~~l~~~ 113 (119)
+.+.|.+||++.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 899999999875
No 65
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.74 E-value=8.8e-17 Score=101.99 Aligned_cols=89 Identities=18% Similarity=0.353 Sum_probs=73.1
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----------------------hHHhhcCCCcc
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----------------------SVATDWAVEAM 83 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~v~~~ 83 (119)
.++++++|.||++||++|++..|.++++.++ ++.++.|+.+++. .+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 3799999999999999999999999999764 6778878754321 34557899999
Q ss_pred cE-EEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 84 PT-FMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 84 P~-~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
|+ |++.++|+++.++.|. +.+.+++.|+.++++.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 95 6666899999999998 8888999888887654
No 66
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.73 E-value=3.6e-17 Score=95.83 Aligned_cols=85 Identities=32% Similarity=0.558 Sum_probs=65.2
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHH---HHhCC-CeEEEEEeCccc--------------------hhHHhhcCCC
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAEL---AKKLP-NVLFLKVDVDEL--------------------KSVATDWAVE 81 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l---~~~~~-~v~~~~vd~~~~--------------------~~~~~~~~v~ 81 (119)
..++++++++|+++||++|+.+.+.+.+. ...+. ++.++.++.+.. .++.++|++.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 35899999999999999999999998864 33332 577777777542 3589999999
Q ss_pred cccEEEEEe-CCeEEEEEeCC-CHHHHHHHH
Q 033426 82 AMPTFMFLK-EGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 82 ~~P~~~i~~-~g~~~~~~~~~-~~~~l~~~l 110 (119)
++|+++++. +|+.+.+..|. ++++|.++|
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999984 89999999999 889988775
No 67
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.70 E-value=1.3e-16 Score=95.37 Aligned_cols=84 Identities=30% Similarity=0.458 Sum_probs=66.8
Q ss_pred HhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC-----------------------ccchhHHhhc
Q 033426 22 LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-----------------------DELKSVATDW 78 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-----------------------~~~~~~~~~~ 78 (119)
+..+..++++++|+||++||+.|+...+.++++.+++ ++.++.|+. +....++..|
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL 96 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence 3334467999999999999999999999999999887 466666653 3445678889
Q ss_pred CCCcccE-EEEEeCCeEEEEEeCC-CHHHH
Q 033426 79 AVEAMPT-FMFLKEGKIVDKVVGS-KKEEL 106 (119)
Q Consensus 79 ~v~~~P~-~~i~~~g~~~~~~~~~-~~~~l 106 (119)
++.++|+ +++.++|+++.+..|. +.+.|
T Consensus 97 ~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 97 GVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999995 5555799999999988 65543
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=112.74 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=73.8
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEe----------------------------CccchhHHh
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVD----------------------------VDELKSVAT 76 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd----------------------------~~~~~~~~~ 76 (119)
.++++++|.||++||+.|+...|.+++++++++ ++.++.|. .+.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 489999999999999999999999999999886 56665543 244567889
Q ss_pred hcCCCcccEEEE-EeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 77 DWAVEAMPTFMF-LKEGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 77 ~~~v~~~P~~~i-~~~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.|++.++|++++ .++|+++.+..|. +.++|.++|+..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999998754 5899999999999 899999998843
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.70 E-value=3e-16 Score=101.68 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=72.2
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHH
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEEL 106 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l 106 (119)
++...|+.||++||++|+.+.+.+++++.+++++.+..+|.+.+++++.+|+|.++||++++++|+. +.|. +.+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 4555666699999999999999999999998889999999999999999999999999999988863 6677 78888
Q ss_pred HHHHHH
Q 033426 107 QQTIAK 112 (119)
Q Consensus 107 ~~~l~~ 112 (119)
.++|.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 888865
No 70
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.70 E-value=4.6e-16 Score=97.76 Aligned_cols=87 Identities=29% Similarity=0.484 Sum_probs=71.6
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC-----------------------ccchhHHhhcCCCcc
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-----------------------DELKSVATDWAVEAM 83 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~v~~~ 83 (119)
..+++++|+||++||+.|+...|.++++.++ ++.++.|+. +....+.+.|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3689999999999999999999999999875 466666654 223356778899999
Q ss_pred cE-EEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 84 PT-FMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 84 P~-~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
|+ +++.++|+++.++.|. +.++++++|+++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 95 6565899999999998 89999999999875
No 71
>PHA02125 thioredoxin-like protein
Probab=99.70 E-value=4.5e-16 Score=85.19 Aligned_cols=70 Identities=26% Similarity=0.639 Sum_probs=59.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC--CHHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS--KKEELQQTI 110 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~--~~~~l~~~l 110 (119)
+++||++||++|+.+.+.++++. ..++.+|.+++.+++++|++.++||++ +|+.+.+..|. +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 78999999999999999997653 457889999999999999999999987 68888888887 346666554
No 72
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.69 E-value=1.3e-15 Score=101.61 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=72.5
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-----------chhHHhhcCCCcccEEEEEeC-Ce
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-----------LKSVATDWAVEAMPTFMFLKE-GK 93 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~P~~~i~~~-g~ 93 (119)
...++++||+||++||++|+.+.|.+++++++++ +.++.|+.+. +..++++|||.++|++++++. |+
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 4579999999999999999999999999999994 5666565543 346889999999999888863 54
Q ss_pred -EEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 94 -IVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 94 -~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+.....|. +.++|.+.+......
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 44455577 899999988877653
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.69 E-value=4.4e-16 Score=95.84 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=65.4
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc------------hhH-Hhhc---CCCcccEEEEE-
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL------------KSV-ATDW---AVEAMPTFMFL- 89 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~------------~~~-~~~~---~v~~~P~~~i~- 89 (119)
..++..+|.||++||++|++..|.++++++++ ++.++.|+.+.. ... ...| ++.++|+.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 34667799999999999999999999999998 455655555432 222 2345 78999985555
Q ss_pred eCCeE-EEEEeCC-CHHHHHHHHHHHh
Q 033426 90 KEGKI-VDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 90 ~~g~~-~~~~~~~-~~~~l~~~l~~~~ 114 (119)
++|+. +....|. +.+++++.|++++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 67664 5577888 8999999888764
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=4.9e-16 Score=109.99 Aligned_cols=105 Identities=33% Similarity=0.549 Sum_probs=85.7
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCC
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVE 81 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~ 81 (119)
.+.+..+. ..+|.+.+. ..++.++|+||++||++|+.+.|.++++++.+. .+.|+.+|++.+. +.. +++.
T Consensus 345 ~~~v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVE 418 (462)
T ss_pred CCccEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCcc
Confidence 34566664 578998883 579999999999999999999999999999885 4889999998764 334 9999
Q ss_pred cccEEEEEeCCeEE--EEEeCC-CHHHHHHHHHHHhhh
Q 033426 82 AMPTFMFLKEGKIV--DKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 82 ~~P~~~i~~~g~~~--~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
++|++++|++|... ....|. +.+.+.++|++....
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 99999999877542 445566 899999999987654
No 75
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.67 E-value=1.9e-16 Score=105.12 Aligned_cols=98 Identities=22% Similarity=0.519 Sum_probs=83.5
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccchhHHhhcCCCcccEEEEEeCC
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEG 92 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g 92 (119)
++...+.. ...+..++|.||+|||++|+++.|.+.++--+.+ .+++-++|++..+.++..|+|.++||+.++++|
T Consensus 32 DLddkFkd-nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd 110 (468)
T KOG4277|consen 32 DLDDKFKD-NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD 110 (468)
T ss_pred hhhHHhhh-cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC
Confidence 34444433 2568899999999999999999999999977765 388899999999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHhh
Q 033426 93 KIVDKVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~~~ 115 (119)
..+.+..|...+.+.+|..+..+
T Consensus 111 ~a~dYRG~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 111 HAIDYRGGREKDAIIEFAHRCAA 133 (468)
T ss_pred eeeecCCCccHHHHHHHHHhccc
Confidence 99888777789999999887654
No 76
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.67 E-value=1.2e-15 Score=95.61 Aligned_cols=88 Identities=31% Similarity=0.616 Sum_probs=74.4
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc----------------------chhHHhhcCCC
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE----------------------LKSVATDWAVE 81 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~----------------------~~~~~~~~~v~ 81 (119)
...+++++|+||++||+.|+...+.+.++.++++ ++.++.++.+. +..+.+.|++.
T Consensus 58 ~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 58 DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 3578999999999999999999999999999986 47888887643 35678999999
Q ss_pred cccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 82 AMPTFMFL-KEGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 82 ~~P~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.+|+++++ ++|+++....|. +.+++.++++++
T Consensus 138 ~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99986655 699999888888 889999988764
No 77
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.9e-15 Score=82.89 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=57.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC--CHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS--KKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~--~~~~l~~~ 109 (119)
.|.||++||+.|+.+.+.+++++++++ .+.++.+| +.+.+.+|++.++|++++ ||+.+ ..|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999986 47777777 233478899999999888 88887 4453 56777776
Q ss_pred H
Q 033426 110 I 110 (119)
Q Consensus 110 l 110 (119)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 78
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.8e-16 Score=110.03 Aligned_cols=103 Identities=28% Similarity=0.488 Sum_probs=83.7
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccchhHHhhcCCCcc
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDELKSVATDWAVEAM 83 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~ 83 (119)
++|.-+- ..+|+.++ ...+|-++|.||+|||+||+++.|.+++|++.|. ++.+..+|.+.|. ....++.++
T Consensus 366 ~pVkvvV-gknfd~iv---~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~f 439 (493)
T KOG0190|consen 366 SPVKVVV-GKNFDDIV---LDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGF 439 (493)
T ss_pred CCeEEEe-ecCHHHHh---hccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Ccccccccc
Confidence 5566664 57899998 5789999999999999999999999999999986 5899999998875 355677789
Q ss_pred cEEEEEeCCe--EEEEEeCC-CHHHHHHHHHHHhh
Q 033426 84 PTFMFLKEGK--IVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 84 P~~~i~~~g~--~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
||+.+++.|. -...+.|. +.+++..++++...
T Consensus 440 PTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 440 PTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999997553 23334555 89999999987653
No 79
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.66 E-value=1.4e-15 Score=81.44 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=56.4
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
.+..|+++||++|+.+.+.+++++..++++.+..+|.+++++++.+|++.++|++++ +|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 478899999999999999999999888889999999999999999999999999866 565443
No 80
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.66 E-value=2.8e-15 Score=84.54 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=67.0
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHH
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEE 105 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~ 105 (119)
-.+..-+..|+++||++|....+.++++++.++++.+..+|.++.++++.+|+|.++|++++ ||+.+.. |. +.++
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence 46777899999999999999999999999999999999999999999999999999999875 8887775 54 5554
Q ss_pred H
Q 033426 106 L 106 (119)
Q Consensus 106 l 106 (119)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.65 E-value=7.9e-15 Score=87.32 Aligned_cols=80 Identities=21% Similarity=0.196 Sum_probs=62.3
Q ss_pred HhhchhCCCeEEEEEeCCCCHhHHhhhHH-H--HHHHHhC-CCeEEEEEeCccchhHHh--------hcCCCcccEEEEE
Q 033426 22 LQKSNETKQLVVVDFTASWCGPCRFIAPF-L--AELAKKL-PNVLFLKVDVDELKSVAT--------DWAVEAMPTFMFL 89 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~~-~~v~~~~vd~~~~~~~~~--------~~~v~~~P~~~i~ 89 (119)
+..+..++|+++|+|+++||+.|+.+.+. + .++.+.. .+..++.+|.++.+++.+ .|++.++|+++++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34445799999999999999999999863 3 3455543 478899999988877655 3589999998888
Q ss_pred -eCCeEEEEEeCC
Q 033426 90 -KEGKIVDKVVGS 101 (119)
Q Consensus 90 -~~g~~~~~~~~~ 101 (119)
.+|+++....+.
T Consensus 88 ~~~G~~~~~~~~~ 100 (124)
T cd02955 88 TPDLKPFFGGTYF 100 (124)
T ss_pred CCCCCEEeeeeec
Confidence 689999766544
No 82
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.65 E-value=1.1e-14 Score=87.02 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=85.4
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCC--CCHhHHhhhHHHHHHHHhCC-C-eEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTAS--WCGPCRFIAPFLAELAKKLP-N-VLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~l~~~~~-~-v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
.+++..+ ..+...+++|-++ -++.+..+.-.+++++++|+ + +.++.||.++++.++.+|||.++||+++|++
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 4555556 3555667777654 56888899999999999997 3 9999999999999999999999999999999
Q ss_pred CeEEEEEeCC-CHHHHHHHHHHHhhhhc
Q 033426 92 GKIVDKVVGS-KKEELQQTIAKHLATAS 118 (119)
Q Consensus 92 g~~~~~~~~~-~~~~l~~~l~~~~~~~~ 118 (119)
|+.+.+..|. +.+++.++|++++....
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999999998 89999999999987654
No 83
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.65 E-value=2.5e-15 Score=91.62 Aligned_cols=72 Identities=21% Similarity=0.473 Sum_probs=58.2
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---------CeEEEEEeCccc-------------------------
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---------NVLFLKVDVDEL------------------------- 71 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---------~v~~~~vd~~~~------------------------- 71 (119)
+.++++++|+|||+||++|+.+.|.+.++++++. ++.++.|+.+++
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 4689999999999999999999999999876432 477777775431
Q ss_pred hhHHhhcCCCcccEEEEE-eCCeEEEE
Q 033426 72 KSVATDWAVEAMPTFMFL-KEGKIVDK 97 (119)
Q Consensus 72 ~~~~~~~~v~~~P~~~i~-~~g~~~~~ 97 (119)
..+.+.|++.++|+.+++ ++|+++.+
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 257788999999986666 69999876
No 84
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.64 E-value=8.4e-16 Score=101.79 Aligned_cols=98 Identities=30% Similarity=0.587 Sum_probs=84.7
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHh----CC--CeEEEEEeCccchhHHhhcCCCcccEEEEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK----LP--NVLFLKVDVDELKSVATDWAVEAMPTFMFL 89 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~----~~--~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~ 89 (119)
.+++..+ ..+..++|-||++||+.++.+.|.|++.++. +| .+.+..||++....++.+|.|..+||+.++
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 4566677 4699999999999999999999999888765 45 488999999999999999999999999999
Q ss_pred eCCeEEE-EEeCC-CHHHHHHHHHHHhhhh
Q 033426 90 KEGKIVD-KVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 90 ~~g~~~~-~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
++|.... .+.|. +.+.|.++|++.++.+
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccH
Confidence 9998887 44466 7999999999987643
No 85
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.64 E-value=3.7e-15 Score=84.86 Aligned_cols=66 Identities=38% Similarity=0.683 Sum_probs=54.2
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccc-------------------------hhHHhhcCC
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDEL-------------------------KSVATDWAV 80 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~-------------------------~~~~~~~~v 80 (119)
||+++|+||++||+.|++..|.+.++.++++ ++.++.|+.++. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 688888876542 368889999
Q ss_pred CcccEEEEE-eCCeE
Q 033426 81 EAMPTFMFL-KEGKI 94 (119)
Q Consensus 81 ~~~P~~~i~-~~g~~ 94 (119)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999997777 57864
No 86
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.62 E-value=1.8e-14 Score=84.79 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=81.0
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHH-H--HHHHHhCC-CeEEEEEeCc--cchhHHhhcCCCcccEEEEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPF-L--AELAKKLP-NVLFLKVDVD--ELKSVATDWAVEAMPTFMFL 89 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-~--~~l~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~P~~~i~ 89 (119)
.+|.+.+..+..++|+++|+|+++||++|+.+... | .++.+... +..++.+|.+ +...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46788888888899999999999999999998753 3 33333332 5667777876 45678999999999998888
Q ss_pred -e-CCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 90 -K-EGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 90 -~-~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
. +|+++.+..|. +++++...|++...
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 4 79999999999 89999999888764
No 87
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.62 E-value=3.9e-15 Score=89.71 Aligned_cols=78 Identities=32% Similarity=0.546 Sum_probs=60.7
Q ss_pred HHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccc-------------------------
Q 033426 21 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDEL------------------------- 71 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~------------------------- 71 (119)
.+..+..++++++|.||++||+.|+...|.++++++++. ++.++.|+.+..
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 88 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELR 88 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHH
Confidence 344445689999999999999999999999999987764 466766665432
Q ss_pred hhHHhhcCCCcccEEEEE-eCCeEEEEE
Q 033426 72 KSVATDWAVEAMPTFMFL-KEGKIVDKV 98 (119)
Q Consensus 72 ~~~~~~~~v~~~P~~~i~-~~g~~~~~~ 98 (119)
..+.+.|++.++|+++++ ++|+++.+.
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 245667999999997777 589887654
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.61 E-value=5.8e-15 Score=88.75 Aligned_cols=73 Identities=30% Similarity=0.577 Sum_probs=58.6
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----CeEEEEEeCccc------------------------hhHHhh
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----NVLFLKVDVDEL------------------------KSVATD 77 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~~~~------------------------~~~~~~ 77 (119)
..++++++|+||++||+.|+...|.+.++.+++. ++.++.++.+.. ..+.+.
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT 94 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence 4579999999999999999999999999887763 466666665432 357789
Q ss_pred cCCCcccEEEEE-eCCeEEEEE
Q 033426 78 WAVEAMPTFMFL-KEGKIVDKV 98 (119)
Q Consensus 78 ~~v~~~P~~~i~-~~g~~~~~~ 98 (119)
|++.++|+++++ ++|+++.+.
T Consensus 95 ~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 95 FKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred cCCCCCCEEEEECCCCCEEccc
Confidence 999999998777 589887754
No 89
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.5e-15 Score=102.70 Aligned_cols=91 Identities=31% Similarity=0.550 Sum_probs=80.1
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHH
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKE 104 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~ 104 (119)
..+++.+|.||+|||++|+++.+.+.++++.+.+ +.+..||++.+.++++.|++.++||+.+|..|.......|. +.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~ 124 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE 124 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH
Confidence 6899999999999999999999999999999876 88999999999999999999999999999888433444455 899
Q ss_pred HHHHHHHHHhhhh
Q 033426 105 ELQQTIAKHLATA 117 (119)
Q Consensus 105 ~l~~~l~~~~~~~ 117 (119)
.+.+++...++.+
T Consensus 125 ~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 125 SLAEFLIKELEPS 137 (383)
T ss_pred HHHHHHHHhhccc
Confidence 9999988877654
No 90
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.61 E-value=1.1e-14 Score=84.59 Aligned_cols=74 Identities=36% Similarity=0.671 Sum_probs=65.6
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC--CCeEEEEEeCccc-----------------------hhHHhhcCCC
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDEL-----------------------KSVATDWAVE 81 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~--~~v~~~~vd~~~~-----------------------~~~~~~~~v~ 81 (119)
..+++++++||++||+.|+...+.+.++..++ +++.++.|+.+.. ..+.+.|++.
T Consensus 17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 45899999999999999999999999999998 5799999998875 6789999999
Q ss_pred cccEEEEE-eCCeEEEEEeC
Q 033426 82 AMPTFMFL-KEGKIVDKVVG 100 (119)
Q Consensus 82 ~~P~~~i~-~~g~~~~~~~~ 100 (119)
++|+++++ ++|+++.+..|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 99987777 58999887765
No 91
>PLN02412 probable glutathione peroxidase
Probab=99.60 E-value=6.8e-15 Score=91.97 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=81.5
Q ss_pred CccccCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc--------c
Q 033426 1 MAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD--------E 70 (119)
Q Consensus 1 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~--------~ 70 (119)
||.+....+.+++-.+.-.+.+..++.+++++||.||++||+.|++..+.++++.++|+ ++.++.|+.+ +
T Consensus 1 ~~~~~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~ 80 (167)
T PLN02412 1 MAEESPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGS 80 (167)
T ss_pred CCcccCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCC
Confidence 44444445555543222223344445689999999999999999999999999999996 5888888642 1
Q ss_pred chhH----HhhcC----------------------------------CCcccE-EEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 71 LKSV----ATDWA----------------------------------VEAMPT-FMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 71 ~~~~----~~~~~----------------------------------v~~~P~-~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
..++ .++++ +...|+ |++.++|+++.++.|. +.+++++.|
T Consensus 81 ~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i 160 (167)
T PLN02412 81 NEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDI 160 (167)
T ss_pred HHHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHH
Confidence 1111 11111 333575 6666899999999999 899999999
Q ss_pred HHHhhhh
Q 033426 111 AKHLATA 117 (119)
Q Consensus 111 ~~~~~~~ 117 (119)
+++++++
T Consensus 161 ~~~l~~~ 167 (167)
T PLN02412 161 QNLLGQA 167 (167)
T ss_pred HHHHhhC
Confidence 9998753
No 92
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.60 E-value=8e-15 Score=93.99 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=73.2
Q ss_pred HHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc--------c---chhHHhhcCC-------
Q 033426 21 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD--------E---LKSVATDWAV------- 80 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~--------~---~~~~~~~~~v------- 80 (119)
.+..+..++++++|.||++||+.|+...|.++++.+++. ++.++.|+++ + .....+++++
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeee
Confidence 344445689999999999999999999999999999985 5888888652 1 1122223222
Q ss_pred -------------------------C----ccc----EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 81 -------------------------E----AMP----TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 81 -------------------------~----~~P----~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
. .+| +|++.++|+++.++.|. +.+.+++.|++++++.
T Consensus 111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1 122 57777999999999988 7889999999988764
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=1.9e-14 Score=110.49 Aligned_cols=90 Identities=23% Similarity=0.418 Sum_probs=76.2
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC--eEEEEEeC---------------------------ccchhHHh
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDV---------------------------DELKSVAT 76 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~--v~~~~vd~---------------------------~~~~~~~~ 76 (119)
..+++++||.||++||+.|+...|.+++++++|++ +.++.|.. +....+.+
T Consensus 417 ~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 417 DLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred hcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 35799999999999999999999999999999964 66766631 12346778
Q ss_pred hcCCCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 77 DWAVEAMPTFMFL-KEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 77 ~~~v~~~P~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
+|++.++|+++++ ++|+++.+..|. ..+.+.++|++.+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999998888 799999999998 78999999988864
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.59 E-value=2.5e-14 Score=84.92 Aligned_cols=83 Identities=28% Similarity=0.523 Sum_probs=64.5
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC---------------------ccchhHHhhcCCCccc
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV---------------------DELKSVATDWAVEAMP 84 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~---------------------~~~~~~~~~~~v~~~P 84 (119)
...+++++|.||++||+.|+...+.+.++++++. +..+.+|. +.+..++++|++.++|
T Consensus 17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred HhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 3567999999999999999999999999988853 22222222 3445789999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
+++++.+|+++.+..|. +.+.|.+.
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 98888544488888888 78887654
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.59 E-value=5.4e-14 Score=88.29 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=66.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc-------------hhHHhhcCC--CcccE-EEEEeCCeEE-
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL-------------KSVATDWAV--EAMPT-FMFLKEGKIV- 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-------------~~~~~~~~v--~~~P~-~~i~~~g~~~- 95 (119)
+|.||++||++|++..|.++++++++ ++.++.|+.+.. ..+...|++ .++|+ |++.++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999999 566666655422 236678885 69997 5555899986
Q ss_pred EEEeCC-CHHHHHHHHHHHhhh
Q 033426 96 DKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 96 ~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
....|. +.+++++.|++++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 468888 899999999988764
No 96
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.57 E-value=5.2e-14 Score=84.13 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=64.3
Q ss_pred HhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeC---------------------------ccch
Q 033426 22 LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDV---------------------------DELK 72 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~---------------------------~~~~ 72 (119)
+..+..++++++|+||++||+.|+...+.++++.++++ ++.++.|+. |...
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 34344578999999999999999999999999999996 477777743 1123
Q ss_pred hHHhhcCCCcccEEEEE-eCCeEEEEEeCC
Q 033426 73 SVATDWAVEAMPTFMFL-KEGKIVDKVVGS 101 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~-~~g~~~~~~~~~ 101 (119)
.+.+.|++.++|+.+++ ++|+++....|.
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 56778999999986666 689999988774
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.57 E-value=2e-14 Score=87.83 Aligned_cols=81 Identities=37% Similarity=0.573 Sum_probs=66.1
Q ss_pred HHhhchhCCCeEEEEEeCC-CCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc---------------------cchhHHh
Q 033426 21 QLQKSNETKQLVVVDFTAS-WCGPCRFIAPFLAELAKKLP--NVLFLKVDVD---------------------ELKSVAT 76 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~---------------------~~~~~~~ 76 (119)
.+..+..++++++|.||++ ||++|+...|.+.++++.++ ++.++.|..+ ....+.+
T Consensus 20 ~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 20 PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 3444456899999999999 99999999999999988853 5777777643 2347888
Q ss_pred hcCCC---------cccEE-EEEeCCeEEEEEeCC
Q 033426 77 DWAVE---------AMPTF-MFLKEGKIVDKVVGS 101 (119)
Q Consensus 77 ~~~v~---------~~P~~-~i~~~g~~~~~~~~~ 101 (119)
.|++. ++|++ ++.++|+++....|.
T Consensus 100 ~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 100 ALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp HTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred HhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99988 99974 555899999999998
No 98
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.55 E-value=4.7e-14 Score=89.82 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=64.4
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc--------------------cchhHHhhcCCCcccE-
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD--------------------ELKSVATDWAVEAMPT- 85 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~--------------------~~~~~~~~~~v~~~P~- 85 (119)
.++++++|+||++||+.|+...|.+.++.+++ ++.++.+..+ ...++.+.|++..+|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999998875 3444434311 1346778999999997
Q ss_pred EEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 033426 86 FMFLKEGKIVDKVVGSKKEELQQTIAKH 113 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~~~~~l~~~l~~~ 113 (119)
+++.++|+++.+....+.+++++.++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 4445799988763333677888877654
No 99
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.55 E-value=4.2e-14 Score=92.46 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=72.3
Q ss_pred HHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc--------cc---hhHH-hhcC------
Q 033426 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD--------EL---KSVA-TDWA------ 79 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~--------~~---~~~~-~~~~------ 79 (119)
+.+..++.+++++||.||++||+.|....|.+++++++++ ++.++.|+.+ +. ...+ ++++
T Consensus 90 ~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl 169 (236)
T PLN02399 90 KDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIF 169 (236)
T ss_pred CEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccc
Confidence 3344445689999999999999999999999999999986 5888888752 11 1111 1211
Q ss_pred ----------------------------CCcccE-EEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 80 ----------------------------VEAMPT-FMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 80 ----------------------------v~~~P~-~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
+...|+ |++.++|+++.++.|. +.+++++.|+++++
T Consensus 170 ~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 170 DKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 122474 6666899999999999 89999999999875
No 100
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.52 E-value=1e-13 Score=82.79 Aligned_cols=90 Identities=14% Similarity=0.224 Sum_probs=62.3
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
+|....++++.+..+..++|+++|+|+++||++|+.+...+ .++++... +...+.++.+....-....+ .++|++
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPti 83 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRI 83 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeE
Confidence 34444578888888889999999999999999999998764 23333331 44555666543221111234 689998
Q ss_pred EEE-eCCeEEEEEeCC
Q 033426 87 MFL-KEGKIVDKVVGS 101 (119)
Q Consensus 87 ~i~-~~g~~~~~~~~~ 101 (119)
+++ .+|+++.+..|.
T Consensus 84 vFld~~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDPSLTVRADITGR 99 (130)
T ss_pred EEECCCCCCccccccc
Confidence 888 688888877665
No 101
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.52 E-value=2.9e-13 Score=89.87 Aligned_cols=107 Identities=22% Similarity=0.406 Sum_probs=82.4
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCccc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
..+.+.+|.+.+.|...+... .++..+||+||.+.++.|..+...|..|+.+|+.++|++|.....+ +...|....+|
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LP 200 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLP 200 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred cCceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCC
Confidence 356788998888899988653 4567899999999999999999999999999999999999998765 78899999999
Q ss_pred EEEEEeCCeEEEEEeCC--------CHHHHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGS--------KKEELQQTIAKH 113 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~--------~~~~l~~~l~~~ 113 (119)
++++|++|..+..+.|. +.+.|+.+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999988765 234666666543
No 102
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.52 E-value=9e-14 Score=85.72 Aligned_cols=93 Identities=23% Similarity=0.244 Sum_probs=70.3
Q ss_pred HhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeC--------ccc---hhHHhh-c---------
Q 033426 22 LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDV--------DEL---KSVATD-W--------- 78 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~--------~~~---~~~~~~-~--------- 78 (119)
+..++.+||+++|.||++||+.|+...|.++++.++++ ++.++.++. ++. ...+++ +
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d 94 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSK 94 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccce
Confidence 44446789999999999999999999999999999986 588888874 111 111211 1
Q ss_pred --------------CC---Cccc-----EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 79 --------------AV---EAMP-----TFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 79 --------------~v---~~~P-----~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.+ ...| +|++.++|+++.++.|. +.+++.+.|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 95 IKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred EecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 11 1367 68888999999999998 7889998888764
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.52 E-value=2.6e-13 Score=85.58 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=65.7
Q ss_pred hhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEE------EEEeCcc--------------------------
Q 033426 23 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLF------LKVDVDE-------------------------- 70 (119)
Q Consensus 23 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~------~~vd~~~-------------------------- 70 (119)
..++.+||+.+|.||+.||+.|+...|.++++.++ ++.+ +.||.++
T Consensus 53 ~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 53 GSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred cHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 33456799999999999999999999999999765 3333 4455432
Q ss_pred ---chhHHhhcCCCccc-E-EEEEeCCeEEEEEeCC-CHHHHHH
Q 033426 71 ---LKSVATDWAVEAMP-T-FMFLKEGKIVDKVVGS-KKEELQQ 108 (119)
Q Consensus 71 ---~~~~~~~~~v~~~P-~-~~i~~~g~~~~~~~~~-~~~~l~~ 108 (119)
...+...|++.++| + |++.++|+++.++.|. +.+++++
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 23466788999997 5 5666899999999999 8777766
No 104
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.51 E-value=1.3e-13 Score=98.39 Aligned_cols=102 Identities=19% Similarity=0.436 Sum_probs=85.2
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCCCeEEEEEeCccc----hhHHhhcCCCc
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLPNVLFLKVDVDEL----KSVATDWAVEA 82 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~~v~~~~vd~~~~----~~~~~~~~v~~ 82 (119)
..+++..++++.+.+ .++|++++.||++||..|+.+.+.. .+...+.+++.+.++|.+++ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 677777788888864 3557999999999999999998765 34556667999999999754 36789999999
Q ss_pred ccEEEEEe-CCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 83 MPTFMFLK-EGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 83 ~P~~~i~~-~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.|++++|. +|+......|. +.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999996 88888888888 999999998875
No 105
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-14 Score=102.07 Aligned_cols=108 Identities=26% Similarity=0.504 Sum_probs=82.6
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---C-eEEEEEeCc--cchhHHhhc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---N-VLFLKVDVD--ELKSVATDW 78 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~-v~~~~vd~~--~~~~~~~~~ 78 (119)
.+.+|+.+ +.++|...+. .+.+..+|.||++||++|+++.|.++++++... . +.++.||+. +|..+|+.|
T Consensus 37 ~~D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred CCCCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 45778888 5789999994 455788999999999999999999999998764 3 788899984 688999999
Q ss_pred CCCcccEEEEEe-C---CeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 79 AVEAMPTFMFLK-E---GKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 79 ~v~~~P~~~i~~-~---g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+|.++|++.+|. + +..-....|+ ...++.+++.+.+..
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHH
Confidence 999999999994 2 1111233344 366676666666543
No 106
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.48 E-value=5.1e-13 Score=78.30 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCc---c-----------------chhHHhhcCCCcccEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVD---E-----------------LKSVATDWAVEAMPTF 86 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~---~-----------------~~~~~~~~~v~~~P~~ 86 (119)
++++++|+||++||+.|+...|.++++.+++. ++.++.+..+ + +..+.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 38999999999999999999999999988874 4666555211 1 2356678888899985
Q ss_pred EEE-eCCeEEEE
Q 033426 87 MFL-KEGKIVDK 97 (119)
Q Consensus 87 ~i~-~~g~~~~~ 97 (119)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 555 68887764
No 107
>smart00594 UAS UAS domain.
Probab=99.45 E-value=2.4e-12 Score=76.63 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=74.6
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCC-CeEEEEEeCc--cchhHHhhcCCCcccEEEE
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLP-NVLFLKVDVD--ELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~-~v~~~~vd~~--~~~~~~~~~~v~~~P~~~i 88 (119)
..++++.+..+..++|+++|+|+++||+.|+.+.... .++.+... +..+..+|.+ +...++.+|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 4578888888888999999999999999999987643 33333332 5777777765 4567899999999999888
Q ss_pred E-eCC-----eEEEEEeCC-CHHHHHHHH
Q 033426 89 L-KEG-----KIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 89 ~-~~g-----~~~~~~~~~-~~~~l~~~l 110 (119)
+ .+| .++.+..|. +++++...|
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 8 455 467788888 888888775
No 108
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.45 E-value=3.4e-13 Score=83.05 Aligned_cols=86 Identities=21% Similarity=0.344 Sum_probs=62.8
Q ss_pred hhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-----------chhHHhh-c----------
Q 033426 23 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-----------LKSVATD-W---------- 78 (119)
Q Consensus 23 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-----------~~~~~~~-~---------- 78 (119)
..++.++++++|.||++||+ |+...|.++++++++. ++.++.|+.+. ....++. +
T Consensus 16 ~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 16 SLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKI 94 (152)
T ss_pred eHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeE
Confidence 33456799999999999999 9999999999999985 58888775421 1112211 1
Q ss_pred -----------C--CCccc------------EEEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 79 -----------A--VEAMP------------TFMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 79 -----------~--v~~~P------------~~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
+ +..+| +|++.++|+++.++.|. +.+++++.
T Consensus 95 d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 95 DVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred eccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 1 23456 56666899999999998 77777653
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.44 E-value=1.5e-12 Score=81.60 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-----------------------------chhHHh
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-----------------------------LKSVAT 76 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-----------------------------~~~~~~ 76 (119)
.++++|++||++||+.|....+.+.++.++++ ++.++.|..+. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 78999999999999999999999999999986 68888886642 225667
Q ss_pred hcCCCcccEEEEE-eCCeEEEEEe---------C-CCHHHHHHHHHHHhhhh
Q 033426 77 DWAVEAMPTFMFL-KEGKIVDKVV---------G-SKKEELQQTIAKHLATA 117 (119)
Q Consensus 77 ~~~v~~~P~~~i~-~~g~~~~~~~---------~-~~~~~l~~~l~~~~~~~ 117 (119)
.|++...|+++++ ++|+++.... + .+...+.+.|+.++...
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 8899999976666 6999886531 1 15688999999887653
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.43 E-value=8.3e-13 Score=73.36 Aligned_cols=74 Identities=34% Similarity=0.685 Sum_probs=56.2
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhC-CCeEEEEEeCccchhHHhhcCCCcccEEEEEe
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLK 90 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~ 90 (119)
.++++.+..+..++++++|+|+++||+.|+.+...+ .++.+.+ .++.++.+|.++...... +...++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 367788888889999999999999999999998776 3444422 468899999987655332 2226799988874
No 111
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-12 Score=90.71 Aligned_cols=104 Identities=27% Similarity=0.448 Sum_probs=86.5
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccchhHHhhcCCCcccE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
+.+.+ .+++...+ ...+..++|.||+|||++|+.+.+.+++++..+. .+.+..+|++.+..++.++++.++|+
T Consensus 146 v~~l~-~~~~~~~~---~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFELT-KDNFDETV---KDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEcc-ccchhhhh---hccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 55554 35676666 3678899999999999999999999999998773 58889999998899999999999999
Q ss_pred EEEEeCCeE-EEEEeCC-CHHHHHHHHHHHhhh
Q 033426 86 FMFLKEGKI-VDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 86 ~~i~~~g~~-~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+++|++|.. .....+. +.+.+..|+......
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999987766 4555555 899999999887655
No 112
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.39 E-value=3.2e-12 Score=79.94 Aligned_cols=91 Identities=26% Similarity=0.407 Sum_probs=85.4
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
+...+|.++.+|-+.. .+..-+|+.||-+.-..|+-+...++.|+..+.+.+|++||....|.++.+++|+.+|++
T Consensus 66 G~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeE
Confidence 5677888899999988 467789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCC
Q 033426 87 MFLKEGKIVDKVVGS 101 (119)
Q Consensus 87 ~i~~~g~~~~~~~~~ 101 (119)
++|++|+.+.+..|.
T Consensus 142 ~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEcCEEEEEEeeH
Confidence 999999999999887
No 113
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.39 E-value=8.9e-12 Score=74.74 Aligned_cols=85 Identities=31% Similarity=0.584 Sum_probs=56.6
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc---CCCcccEEEEE-eCCeEEEEEeCCC
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW---AVEAMPTFMFL-KEGKIVDKVVGSK 102 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~i~-~~g~~~~~~~~~~ 102 (119)
...+..++.|..+|||.|+...|.+.++++..|++.+-.+..+++.++..+| |..++|+|+++ ++|+++.++ |..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ger 117 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GER 117 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCC
Confidence 4677889999999999999999999999999998888888888887776665 77899999999 468888877 455
Q ss_pred HHHHHHHHHH
Q 033426 103 KEELQQTIAK 112 (119)
Q Consensus 103 ~~~l~~~l~~ 112 (119)
++.+.+++++
T Consensus 118 P~~~~~~~~~ 127 (129)
T PF14595_consen 118 PKEVQELVDE 127 (129)
T ss_dssp -HHHH-----
T ss_pred CHHHhhcccc
Confidence 5556555543
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.38 E-value=7.3e-12 Score=67.62 Aligned_cols=69 Identities=28% Similarity=0.554 Sum_probs=54.5
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh----HHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS----VATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQ 108 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~ 108 (119)
+..|+++||++|+++.+.+++ .++.+..+|.++++. +.+.+++.++|++++. |+. ..|.+.+.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 568999999999999888765 368888899887654 4567899999998874 644 56778888888
Q ss_pred HHH
Q 033426 109 TIA 111 (119)
Q Consensus 109 ~l~ 111 (119)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 763
No 115
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.38 E-value=3e-12 Score=81.16 Aligned_cols=95 Identities=22% Similarity=0.204 Sum_probs=69.8
Q ss_pred HHhhchhCCCeE-EEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-------c-h---hH-Hhh--------
Q 033426 21 QLQKSNETKQLV-VVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-------L-K---SV-ATD-------- 77 (119)
Q Consensus 21 ~~~~~~~~~~~~-vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-------~-~---~~-~~~-------- 77 (119)
.+..++.+++++ ++.+|++||+.|+...|.++++.++|. ++.++.|+.+. . . .. .++
T Consensus 32 ~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~ 111 (183)
T PTZ00256 32 LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLF 111 (183)
T ss_pred EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCc
Confidence 344445689865 456699999999999999999999986 58888886421 0 0 00 111
Q ss_pred ----------------------------cCCCcccE----EEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 78 ----------------------------WAVEAMPT----FMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 78 ----------------------------~~v~~~P~----~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
+++.++|+ |++.++|+++.++.|. +.+.+++.|+++++
T Consensus 112 ~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 112 QKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred eEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13446794 8888999999999988 78889999988875
No 116
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.5e-11 Score=71.60 Aligned_cols=94 Identities=19% Similarity=0.341 Sum_probs=73.8
Q ss_pred HHHhhchhCCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCC-CeEEEEEeCcc----------------chhHHhhcC
Q 033426 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFL---AELAKKLP-NVLFLKVDVDE----------------LKSVATDWA 79 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~-~v~~~~vd~~~----------------~~~~~~~~~ 79 (119)
+....+...++..+++|.++.|++|.++...+ .++.+-+. ++.++.++... ..++++.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 33444457899999999999999999998776 33444443 57788777532 248999999
Q ss_pred CCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 80 VEAMPTFMFL-KEGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 80 v~~~P~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
+.++|+++++ ++|+-+...+|+ .++++...++-.
T Consensus 113 vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 113 VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999999999 589999999999 888888776644
No 117
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.33 E-value=4.7e-12 Score=75.08 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=62.4
Q ss_pred HHHhhchhCCCeEEEEEeCC-CCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------chhHH
Q 033426 20 EQLQKSNETKQLVVVDFTAS-WCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------LKSVA 75 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------~~~~~ 75 (119)
+.+..++..+++++|.||+. ||+.|+...+.++++.++++ ++.++.|..+. ...+.
T Consensus 16 ~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~ 95 (124)
T PF00578_consen 16 KTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA 95 (124)
T ss_dssp EEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH
T ss_pred CEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH
Confidence 33445566899999999998 99999999999999999876 78888887643 34778
Q ss_pred hhcCCC------cccEEEEE-eCCeEEEE
Q 033426 76 TDWAVE------AMPTFMFL-KEGKIVDK 97 (119)
Q Consensus 76 ~~~~v~------~~P~~~i~-~~g~~~~~ 97 (119)
+.|++. .+|+++++ ++|+++.+
T Consensus 96 ~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 96 KAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred HHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 889988 89975555 78888753
No 118
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.32 E-value=3.2e-11 Score=71.02 Aligned_cols=81 Identities=22% Similarity=0.474 Sum_probs=57.0
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEeC-------CCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCcc-------chhHHh
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFTA-------SWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDE-------LKSVAT 76 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~~-------~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~-------~~~~~~ 76 (119)
+..-++|.+.+.....++++++|+|++ +|||.|+...|.+++.-...+ +..++.+...+ +.....
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 445678888888765678999999996 499999999999999877765 68888776632 223333
Q ss_pred --hcCCCcccEEEEEeCC
Q 033426 77 --DWAVEAMPTFMFLKEG 92 (119)
Q Consensus 77 --~~~v~~~P~~~i~~~g 92 (119)
+++++++||++-+..+
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 6999999999999776
No 119
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.30 E-value=2.4e-11 Score=76.01 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=62.9
Q ss_pred HHhhchhCCCeEEEEEeCCC-CHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-----------------------chhHHh
Q 033426 21 QLQKSNETKQLVVVDFTASW-CGPCRFIAPFLAELAKKLPNVLFLKVDVDE-----------------------LKSVAT 76 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~-C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------------------~~~~~~ 76 (119)
.+..+..++++++|.||+.| |+.|....+.++++++++.++.++.|+.+. ...+++
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 34444568999999999999 999999999999999998778887776532 226778
Q ss_pred hcCCCccc---------E-EEEEeCCeEEEEEeC
Q 033426 77 DWAVEAMP---------T-FMFLKEGKIVDKVVG 100 (119)
Q Consensus 77 ~~~v~~~P---------~-~~i~~~g~~~~~~~~ 100 (119)
.||+...| + |++.++|+++....+
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred HhCCeecccccCCceeeEEEEECCCCeEEEEEEC
Confidence 88987776 6 555579999998854
No 120
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.29 E-value=1.3e-11 Score=74.76 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=66.0
Q ss_pred hhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------chhHHhhcCCC
Q 033426 26 NETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------LKSVATDWAVE 81 (119)
Q Consensus 26 ~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------~~~~~~~~~v~ 81 (119)
..++++++|.|| +.||+.|....+.+.++.+++. ++.++.|..+. ...+.+.|++.
T Consensus 20 ~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 20 DLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred HhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 456899999999 6899999999999999988774 57777775532 34677888888
Q ss_pred cc---------cEEEEE-eCCeEEEEEeCC-CHHHHHHHH
Q 033426 82 AM---------PTFMFL-KEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 82 ~~---------P~~~i~-~~g~~~~~~~~~-~~~~l~~~l 110 (119)
.. |+.+++ ++|+++..+.|. ..+.+.+.+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 87 875555 689999999988 556665543
No 121
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.29 E-value=7.8e-11 Score=64.50 Aligned_cols=71 Identities=24% Similarity=0.495 Sum_probs=57.1
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeC-C-CHHHHHHHHH
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-S-KKEELQQTIA 111 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~-~-~~~~l~~~l~ 111 (119)
.+++++|++|..+...++++..++ ++.+-.+|..+.+++ .+||+.++|++++ ||+.+.. | . +.+++.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~~~--G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVVFV--GRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEEEE--SS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEEEE--ecCCCHHHHHHHhC
Confidence 347888999999999999999999 477777788666666 9999999999866 7876654 6 3 7899988875
No 122
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.5e-12 Score=79.72 Aligned_cols=93 Identities=24% Similarity=0.463 Sum_probs=79.4
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCC---
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVE--- 81 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~--- 81 (119)
..+.-+++...++..+. ..++..++|.|++.|.+.|+++.|.+.+|+.+|. +++|-.||....++.+.+|+|.
T Consensus 124 e~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred hheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 34555666666666665 4688999999999999999999999999999995 6999999999999999999875
Q ss_pred ---cccEEEEEeCCeEEEEEeCC
Q 033426 82 ---AMPTFMFLKEGKIVDKVVGS 101 (119)
Q Consensus 82 ---~~P~~~i~~~g~~~~~~~~~ 101 (119)
.+||+++|++|+.+.|.+..
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred ccccCCeEEEEccchhhhcCccc
Confidence 69999999999998876544
No 123
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.29 E-value=2.5e-11 Score=73.90 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=65.8
Q ss_pred HhhchhCCCeEEEEEeCCC-CHhHHhhhHHHHHHHHhCCCeEEEEEeCcc----------------------c-hhHHhh
Q 033426 22 LQKSNETKQLVVVDFTASW-CGPCRFIAPFLAELAKKLPNVLFLKVDVDE----------------------L-KSVATD 77 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~-C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----------------------~-~~~~~~ 77 (119)
+..+..+++++||.||+.| |+.|+...+.+.++.++++++.++.|+.+. . ..+.+.
T Consensus 19 ~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 98 (143)
T cd03014 19 VSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA 98 (143)
T ss_pred EeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence 3333457999999999988 699999999999999999888888887642 1 356667
Q ss_pred cCCCc------ccE-EEEEeCCeEEEEEeCCC---HHHHHHHH
Q 033426 78 WAVEA------MPT-FMFLKEGKIVDKVVGSK---KEELQQTI 110 (119)
Q Consensus 78 ~~v~~------~P~-~~i~~~g~~~~~~~~~~---~~~l~~~l 110 (119)
||+.. .|+ +++.++|+++....|.. ..++++.|
T Consensus 99 ~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 99 YGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred hCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 77753 576 55557999999888652 34454443
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.27 E-value=1.1e-10 Score=75.74 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=65.4
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc-----------cchhHHhhcCCCcccEEEEE-eCC-e
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-----------ELKSVATDWAVEAMPTFMFL-KEG-K 93 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-----------~~~~~~~~~~v~~~P~~~i~-~~g-~ 93 (119)
..++..+++||.++|++|+.+.|.+..++++| ++.++.|+.| .+..+++++++..+|++++. .++ +
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 45899999999999999999999999999999 6556555554 35678999999999986666 444 5
Q ss_pred EEEEEeCC-CHHHHHHH
Q 033426 94 IVDKVVGS-KKEELQQT 109 (119)
Q Consensus 94 ~~~~~~~~-~~~~l~~~ 109 (119)
......|. +.++|.+-
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 55566677 78777653
No 125
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.26 E-value=2.1e-11 Score=77.20 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=68.4
Q ss_pred HHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc--------cc---hhHHh-hcCCC-----
Q 033426 21 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD--------EL---KSVAT-DWAVE----- 81 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~--------~~---~~~~~-~~~v~----- 81 (119)
.+..+..+|+++||.||++||+.|. ..+.|+++.++|+ ++.++.+.++ +. .+.++ .++++
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~ 95 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFS 95 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEE
Confidence 3444467899999999999999996 5889999999986 5888888663 11 12232 34432
Q ss_pred ------------------ccc--------------------------------EEEEEeCCeEEEEEeCC-CHHH--HHH
Q 033426 82 ------------------AMP--------------------------------TFMFLKEGKIVDKVVGS-KKEE--LQQ 108 (119)
Q Consensus 82 ------------------~~P--------------------------------~~~i~~~g~~~~~~~~~-~~~~--l~~ 108 (119)
..| .|++.++|+++.++... .+.. |++
T Consensus 96 k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~ 175 (183)
T PRK10606 96 KIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVME 175 (183)
T ss_pred EEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHH
Confidence 233 57777999999999766 4554 999
Q ss_pred HHHHHhh
Q 033426 109 TIAKHLA 115 (119)
Q Consensus 109 ~l~~~~~ 115 (119)
.|+++++
T Consensus 176 ~i~~~l~ 182 (183)
T PRK10606 176 SIKLALA 182 (183)
T ss_pred HHHHHhc
Confidence 9988874
No 126
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=1e-10 Score=67.68 Aligned_cols=85 Identities=41% Similarity=0.756 Sum_probs=68.8
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCc-cchhHHhhcC--CCcccEEEEEeCCeEEEEEeC--C
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVD-ELKSVATDWA--VEAMPTFMFLKEGKIVDKVVG--S 101 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~-~~~~~~~~~~--v~~~P~~~i~~~g~~~~~~~~--~ 101 (119)
.++++++.||++||++|+...|.+.++.++++ .+.+..+|.. ....+...|+ +..+|+++++.+|..+....+ .
T Consensus 31 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 110 (127)
T COG0526 31 KGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKV 110 (127)
T ss_pred CCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhccc
Confidence 38899999999999999999999999999998 4899999997 7888999999 999999988888766554444 2
Q ss_pred -CHHHHHHHHHH
Q 033426 102 -KKEELQQTIAK 112 (119)
Q Consensus 102 -~~~~l~~~l~~ 112 (119)
....+......
T Consensus 111 ~~~~~~~~~~~~ 122 (127)
T COG0526 111 LPKEALIDALGE 122 (127)
T ss_pred CCHHHHHHHhcc
Confidence 44444444433
No 127
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.23 E-value=4.1e-10 Score=64.70 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=69.7
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCcc----chhHHhhcCCCc-c
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDE----LKSVATDWAVEA-M 83 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~----~~~~~~~~~v~~-~ 83 (119)
..+++.+++++.+.. ..+++++|+=.++.|+-..++...|++..+..++ +.++.+|.-+ ...++++|||.+ -
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 467889999999975 4799999999999999999999999999998875 9999999865 457899999985 8
Q ss_pred cEEEEEeCCeEEEEEeCC--CHHHH
Q 033426 84 PTFMFLKEGKIVDKVVGS--KKEEL 106 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~--~~~~l 106 (119)
|.+++++||+++...... +.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 999999999999866544 55554
No 128
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.23 E-value=7.6e-10 Score=65.27 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=79.5
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCC----CCHhHHhhh--HHHHHHHHhCCCeEEEEEeCc--cchhHHhhcCCCcccEEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTAS----WCGPCRFIA--PFLAELAKKLPNVLFLKVDVD--ELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~----~C~~C~~~~--~~~~~l~~~~~~v~~~~vd~~--~~~~~~~~~~v~~~P~~~ 87 (119)
.++.+.+..+..++|.++|+++++ ||..|+... +.+.+..++ +..+...|.+ +...++..+++.++|++.
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 367788888889999999999999 889998766 566666655 5777777875 456789999999999977
Q ss_pred EE--eC--CeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 88 FL--KE--GKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 88 i~--~~--g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
++ ++ ..++.+..|. +++++...|......
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 77 23 4578899999 899999999887653
No 129
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.22 E-value=1.7e-10 Score=62.87 Aligned_cols=70 Identities=19% Similarity=0.433 Sum_probs=51.1
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhh-----cCCCcccEEEEEeCCeEEEEEeCCCHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATD-----WAVEAMPTFMFLKEGKIVDKVVGSKKEELQ 107 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~-----~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~ 107 (119)
++.||++||++|+++.+.+.++ ++.+..+|.++++..... +++.++|++ ++.+|+.+. .++..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 6789999999999999988765 345566888776655555 388999997 567885433 45666776
Q ss_pred HHHH
Q 033426 108 QTIA 111 (119)
Q Consensus 108 ~~l~ 111 (119)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 6654
No 130
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.21 E-value=1e-10 Score=71.48 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=60.5
Q ss_pred HHhhchhCC-CeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc---------------------cc--hh
Q 033426 21 QLQKSNETK-QLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD---------------------EL--KS 73 (119)
Q Consensus 21 ~~~~~~~~~-~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~---------------------~~--~~ 73 (119)
.+..++..+ ++++|.|| ++||+.|....+.++++.++++ ++.++.|..+ .. ..
T Consensus 19 ~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (149)
T cd03018 19 EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGE 98 (149)
T ss_pred EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhH
Confidence 344444566 88888887 8999999999999999998885 5777777542 22 45
Q ss_pred HHhhcCCCc----cc--E-EEEEeCCeEEEEEeCCC
Q 033426 74 VATDWAVEA----MP--T-FMFLKEGKIVDKVVGSK 102 (119)
Q Consensus 74 ~~~~~~v~~----~P--~-~~i~~~g~~~~~~~~~~ 102 (119)
+.+.|++.. .| + +++.++|+++....|..
T Consensus 99 ~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 99 VAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 677888873 23 5 55557999999888764
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.20 E-value=1.9e-10 Score=72.27 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=65.4
Q ss_pred chhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc----------------------------chh
Q 033426 25 SNETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE----------------------------LKS 73 (119)
Q Consensus 25 ~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~----------------------------~~~ 73 (119)
++.+++++||+|| +.||+.|....+.++++++++. ++.++.|..+. ...
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~ 104 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK 104 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence 3457899999999 8999999999999999998884 57777665432 224
Q ss_pred HHhhcCCC------cccE-EEEEeCCeEEEEEeCC-----CHHHHHHHHHHH
Q 033426 74 VATDWAVE------AMPT-FMFLKEGKIVDKVVGS-----KKEELQQTIAKH 113 (119)
Q Consensus 74 ~~~~~~v~------~~P~-~~i~~~g~~~~~~~~~-----~~~~l~~~l~~~ 113 (119)
+.+.|++. ..|+ |++.++|+++....+. +.+++.+.|+.+
T Consensus 105 ~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 105 ISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 55677775 4676 4454799999988543 356677777654
No 132
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.17 E-value=1.8e-09 Score=71.46 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=67.7
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-----------chhHHhhcCCCcccEEEEE-eC-Ce
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-----------LKSVATDWAVEAMPTFMFL-KE-GK 93 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-----------~~~~~~~~~v~~~P~~~i~-~~-g~ 93 (119)
..++..+++||.+.|++|+.+.|.++.++++| ++.++.|+.|. +...++++|++.+|++++. .+ ++
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 35679999999999999999999999999999 45555554443 2457899999999986555 45 55
Q ss_pred EEEEEeCC-CHHHHHHHHHHHhh
Q 033426 94 IVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 94 ~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
......|. +.++|.+-+...+.
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHHh
Confidence 55556678 88988887766543
No 133
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.14 E-value=2.7e-10 Score=72.45 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=63.6
Q ss_pred chhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-------------------------chhHHh
Q 033426 25 SNETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-------------------------LKSVAT 76 (119)
Q Consensus 25 ~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-------------------------~~~~~~ 76 (119)
++..|+++||+|| +.||+.|....+.|+++.+++. ++.++.|..+. ...+++
T Consensus 27 ~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 27 EDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 3468999999999 9999999999999999988874 56666665432 236677
Q ss_pred hcCCC------cccE-EEEEeCCeEEEEEeCC-----CHHHHHHHHH
Q 033426 77 DWAVE------AMPT-FMFLKEGKIVDKVVGS-----KKEELQQTIA 111 (119)
Q Consensus 77 ~~~v~------~~P~-~~i~~~g~~~~~~~~~-----~~~~l~~~l~ 111 (119)
.||+. ..|+ |++.++|+++....+. +.+++.+.|+
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 88875 3585 5555799999876432 3556655554
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.14 E-value=5.2e-10 Score=57.94 Aligned_cols=60 Identities=38% Similarity=0.623 Sum_probs=50.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHh---hcCCCcccEEEEEeCC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT---DWAVEAMPTFMFLKEG 92 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~---~~~v~~~P~~~i~~~g 92 (119)
++.|+++||++|+++.+.+.++....+++.+..++.+....... .+++.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999994445579999999988776554 8899999999988766
No 135
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=70.29 Aligned_cols=71 Identities=30% Similarity=0.707 Sum_probs=55.0
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC----C--eEEEEEeCcc-----------------------chhHHhh
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP----N--VLFLKVDVDE-----------------------LKSVATD 77 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~----~--v~~~~vd~~~-----------------------~~~~~~~ 77 (119)
..||.+.++|.+.||+.|+.+-|.+.+++++.. . |.|++-|.+. ..++...
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 589999999999999999999999988877653 2 4444444322 1367889
Q ss_pred cCCCcccEEEEE-eCCeEEEE
Q 033426 78 WAVEAMPTFMFL-KEGKIVDK 97 (119)
Q Consensus 78 ~~v~~~P~~~i~-~~g~~~~~ 97 (119)
|++.++|++++. .+|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 999999997777 58977764
No 136
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.14 E-value=3.9e-10 Score=69.45 Aligned_cols=88 Identities=20% Similarity=0.193 Sum_probs=63.9
Q ss_pred HhhchhCCCeEEEEEeCC-CCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------chhHHhh
Q 033426 22 LQKSNETKQLVVVDFTAS-WCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------LKSVATD 77 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------~~~~~~~ 77 (119)
+..+..++++++|.||.. ||+.|....+.+.++.+++. ++.++.|..++ ...+.+.
T Consensus 23 ~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 102 (154)
T PRK09437 23 VSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQ 102 (154)
T ss_pred EeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHH
Confidence 333446889999999965 78899999999999988874 58888876532 3356778
Q ss_pred cCCCcc------------cE-EEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 78 WAVEAM------------PT-FMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 78 ~~v~~~------------P~-~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
|++... |+ +++.++|+++..+.|. ..+.+.+.
T Consensus 103 ~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 148 (154)
T PRK09437 103 FGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVV 148 (154)
T ss_pred hCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHH
Confidence 887543 54 5555799999999988 34444443
No 137
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.12 E-value=1.8e-09 Score=60.27 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=57.1
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch----hHHhhcC--CCcccEEEEEeCCeEEEEEeCCCHHH
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK----SVATDWA--VEAMPTFMFLKEGKIVDKVVGSKKEE 105 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~----~~~~~~~--v~~~P~~~i~~~g~~~~~~~~~~~~~ 105 (119)
-|+.|+.+||++|+++...++++..++.++.+..+|.+..+ ++....+ +.++|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 36789999999999999999999988778888888887642 4544444 478999754 675432 4566
Q ss_pred HHHHHHHHh
Q 033426 106 LQQTIAKHL 114 (119)
Q Consensus 106 l~~~l~~~~ 114 (119)
+.+++...+
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 777776654
No 138
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.11 E-value=1.7e-09 Score=71.19 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=67.9
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCcc---------chhHHhhcCCCcccEEEEE-eC-CeE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDE---------LKSVATDWAVEAMPTFMFL-KE-GKI 94 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~---------~~~~~~~~~v~~~P~~~i~-~~-g~~ 94 (119)
..++..+++||.+.|++|+.+.|.++.++++|+ .+.-+++|... +...++++++..+|++++. .+ ++.
T Consensus 141 la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 141 LAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 346699999999999999999999999999994 34445555422 2346679999999986666 33 566
Q ss_pred EEEEeCC-CHHHHHHHHHHHhh
Q 033426 95 VDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 95 ~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
.-...|. +.++|.+-+...+.
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 6666688 89999887776654
No 139
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.10 E-value=1.6e-09 Score=71.02 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=62.1
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC--------------------------------------
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-------------------------------------- 68 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-------------------------------------- 68 (119)
..++..|+.|+.+.||+|+++.+.+.++.+. ++.++.+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4578899999999999999999999888653 344433321
Q ss_pred ------ccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 69 ------DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 69 ------~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
+++..+++++|+.++|+++ +.||+.+ .|. +.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1233788899999999987 6788654 688 889999998764
No 140
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.08 E-value=2.2e-09 Score=65.40 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------chhHHhhcCCC----
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------LKSVATDWAVE---- 81 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------~~~~~~~~~v~---- 81 (119)
++.+|++|+++||+.|+...+.+.++.+++. ++.++.|..++ +..+.+.||+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~ 103 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLP 103 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCc
Confidence 3444555569999999999999999999883 68888886533 34567777773
Q ss_pred -------------------------cccE-EEEEeCCeEEEEEeC
Q 033426 82 -------------------------AMPT-FMFLKEGKIVDKVVG 100 (119)
Q Consensus 82 -------------------------~~P~-~~i~~~g~~~~~~~~ 100 (119)
..|. |++.++|+++..+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 6886 444468888877654
No 141
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.08 E-value=3.2e-09 Score=67.55 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=66.5
Q ss_pred hhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc-------------------------chhHHhh
Q 033426 26 NETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE-------------------------LKSVATD 77 (119)
Q Consensus 26 ~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~-------------------------~~~~~~~ 77 (119)
+.++++++++|| +.||+.|....+.|.++.+++. ++.++.|+.+. +..+++.
T Consensus 28 d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 28 DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 457899999999 9999999999999999999884 56676665432 3467788
Q ss_pred cCC----Ccc--cE-EEEEeCCeEEEEEeC-----CCHHHHHHHHHHH
Q 033426 78 WAV----EAM--PT-FMFLKEGKIVDKVVG-----SKKEELQQTIAKH 113 (119)
Q Consensus 78 ~~v----~~~--P~-~~i~~~g~~~~~~~~-----~~~~~l~~~l~~~ 113 (119)
||+ .++ |+ |++.++|+++..... .+.+++.+.|+.+
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 887 355 85 555579998886543 2577777777654
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.06 E-value=8.2e-10 Score=66.74 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=59.9
Q ss_pred hhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhC--CCeEEEEEeCcc----------------------chhHHhhcCC
Q 033426 26 NETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDE----------------------LKSVATDWAV 80 (119)
Q Consensus 26 ~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~--~~v~~~~vd~~~----------------------~~~~~~~~~v 80 (119)
...+++++|+|| +.||+.|....+.+.++.+++ +++.++.|..+. ...+.+.|++
T Consensus 19 ~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 19 DFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred HhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 347999999999 789999999999999999886 367777776532 2356677777
Q ss_pred Cccc---------E-EEEEeCCeEEEEEeCCC
Q 033426 81 EAMP---------T-FMFLKEGKIVDKVVGSK 102 (119)
Q Consensus 81 ~~~P---------~-~~i~~~g~~~~~~~~~~ 102 (119)
...| + +++.++|+++.+..|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 7666 4 55557899999988874
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.05 E-value=3.1e-09 Score=68.38 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=68.0
Q ss_pred HhhchhCCCeEEE-EEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------------c
Q 033426 22 LQKSNETKQLVVV-DFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------L 71 (119)
Q Consensus 22 ~~~~~~~~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------~ 71 (119)
+..++..++.++| +|+++||+.|....+.|.++.+++. ++.++.|..+. +
T Consensus 20 v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 20 IDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred EeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence 4444567887776 5789999999999999999888874 56666665432 3
Q ss_pred hhHHhhcCCC------cccEEEEE-eCCeEEEEE----e-CCCHHHHHHHHHHHhh
Q 033426 72 KSVATDWAVE------AMPTFMFL-KEGKIVDKV----V-GSKKEELQQTIAKHLA 115 (119)
Q Consensus 72 ~~~~~~~~v~------~~P~~~i~-~~g~~~~~~----~-~~~~~~l~~~l~~~~~ 115 (119)
..+++.||+. .+|+.+++ ++|+++... . |.+.+++.+.|+.+..
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 3667777874 47975555 799888765 2 4478889888887653
No 144
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=3.7e-09 Score=61.46 Aligned_cols=76 Identities=30% Similarity=0.536 Sum_probs=59.6
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeC--------CCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCcc-------chhHHhhc
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTA--------SWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDE-------LKSVATDW 78 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~--------~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~-------~~~~~~~~ 78 (119)
.++|++.++.. ..++.++++|++ +|||.|.++.|.+++..+..+ ++.|+.++..+ +......+
T Consensus 12 ~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 12 YESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCC
Confidence 45677777653 567779999987 599999999999999888766 79999998754 34555666
Q ss_pred CC-CcccEEEEEeC
Q 033426 79 AV-EAMPTFMFLKE 91 (119)
Q Consensus 79 ~v-~~~P~~~i~~~ 91 (119)
++ +.+||++-+++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999988864
No 145
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.5e-08 Score=58.55 Aligned_cols=106 Identities=22% Similarity=0.354 Sum_probs=84.4
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
-+..+++.++.++.+.. ...+.+++.|..+|-+.|-.+...+.+.++...+ +.++-+|.++.+.+.+.|++...|++
T Consensus 4 lLp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 4 LLPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTV 81 (142)
T ss_pred eccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceE
Confidence 45678888999999874 6899999999999999999999999999998875 77888999999999999999999998
Q ss_pred EEEeCCeEEE---------EEeCC--CHHHHHHHHHHHhh
Q 033426 87 MFLKEGKIVD---------KVVGS--KKEELQQTIAKHLA 115 (119)
Q Consensus 87 ~i~~~g~~~~---------~~~~~--~~~~l~~~l~~~~~ 115 (119)
++|-+++=+. ...+. +.+++.+.++....
T Consensus 82 mfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 82 MFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 7775443222 12222 45667776665543
No 146
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.01 E-value=4e-09 Score=65.25 Aligned_cols=80 Identities=25% Similarity=0.421 Sum_probs=51.7
Q ss_pred HHHHhhchhCCCeEEEEEeCCCCHhHHhhhH-HH--HHHHHhCC-CeEEEEEeCccchhHHhhc--------CCCcccEE
Q 033426 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAP-FL--AELAKKLP-NVLFLKVDVDELKSVATDW--------AVEAMPTF 86 (119)
Q Consensus 19 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~~--~~l~~~~~-~v~~~~vd~~~~~~~~~~~--------~v~~~P~~ 86 (119)
++.+..+..++|+++|.++.+||..|+.+.. .| .++++... +..-+.||.++.+++...| |..+.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 3556666789999999999999999998875 33 22333321 3566789999999998888 78999986
Q ss_pred EEE-eCCeEEEEE
Q 033426 87 MFL-KEGKIVDKV 98 (119)
Q Consensus 87 ~i~-~~g~~~~~~ 98 (119)
++. .+|+++...
T Consensus 107 vfltPdg~p~~~~ 119 (163)
T PF03190_consen 107 VFLTPDGKPFFGG 119 (163)
T ss_dssp EEE-TTS-EEEEE
T ss_pred EEECCCCCeeeee
Confidence 666 799888753
No 147
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.99 E-value=3e-09 Score=58.88 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=44.5
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----hHHhhcCCCcccEEEEEeCCeE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----SVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
|+.|+++||++|+++.+.++++.-. +...++.++.+++. .+.+.+++.++|++++ +|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 4789999999999999999998722 23677777776543 2566679999999744 6644
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.97 E-value=8.7e-09 Score=55.26 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=48.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc----CCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW----AVEAMPTFMFLKEGKIVDKVVGSKKEELQQ 108 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~ 108 (119)
++.|+++||++|+++...+.+ .++.+..++.+.+......+ ++.++|++++ +| ....|.+.+.|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 578999999999998887766 25667777777655444433 7889999865 44 3555778777776
Q ss_pred HH
Q 033426 109 TI 110 (119)
Q Consensus 109 ~l 110 (119)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
No 149
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.97 E-value=4e-09 Score=63.88 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=37.2
Q ss_pred hhCCCeEEEEEeCCCCHh-HHhhhHHHHHHHHhCC-----CeEEEEEeCc
Q 033426 26 NETKQLVVVDFTASWCGP-CRFIAPFLAELAKKLP-----NVLFLKVDVD 69 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~-C~~~~~~~~~l~~~~~-----~v~~~~vd~~ 69 (119)
..++++++|.||++||+. |....+.++++.+++. ++.++.|..+
T Consensus 19 ~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 19 DLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred HhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 347899999999999997 9999999999998885 2788777653
No 150
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.9e-10 Score=71.40 Aligned_cols=103 Identities=26% Similarity=0.369 Sum_probs=88.5
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
.+..+....+| .. .+++..++.||++||..|..+...+..+++..+++.|++++.++.++++..+.+...|.++
T Consensus 2 ~v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFV 75 (227)
T ss_pred CceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceee
Confidence 35666666677 22 4899999999999999999999999999999889999999999999999999999999999
Q ss_pred EEeCCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 88 FLKEGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 88 i~~~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
++..|..+.+..|..+..+...++.+...
T Consensus 76 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 104 (227)
T KOG0911|consen 76 FFFLGEKVDRLSGADPPFLVSKVEKLAES 104 (227)
T ss_pred eeecchhhhhhhccCcHHHHHHHHHhhhh
Confidence 99999999999988766666666665543
No 151
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.96 E-value=1.2e-08 Score=57.02 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=53.7
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch----hHHhhcCC--CcccEEEEEeCCeEEEEEeCCCHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK----SVATDWAV--EAMPTFMFLKEGKIVDKVVGSKKEEL 106 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~----~~~~~~~v--~~~P~~~i~~~g~~~~~~~~~~~~~l 106 (119)
++.|+.+||++|+++...|.++..+++++.+..+|.+... .+....+- .++|++++ +|+.+ ...++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-----gG~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-----GGCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-----cCHHHH
Confidence 5789999999999999999999877777778778876432 45555563 79999755 56432 234567
Q ss_pred HHHHHHH
Q 033426 107 QQTIAKH 113 (119)
Q Consensus 107 ~~~l~~~ 113 (119)
.+++.+.
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 7666654
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.94 E-value=2.2e-08 Score=73.20 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHH
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEEL 106 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l 106 (119)
+++.-|-.|.+++|++|..+...+++++.+.|++..-.+|....++++.+|+|.++|++++ ||+.+.. |. +.+++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~~~--G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQVYF--GKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEEEe--eCCCHHHH
Confidence 3444566678999999999999999999999999999999999999999999999999877 6665533 55 88888
Q ss_pred HHHH
Q 033426 107 QQTI 110 (119)
Q Consensus 107 ~~~l 110 (119)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8776
No 153
>PRK15000 peroxidase; Provisional
Probab=98.94 E-value=2.4e-08 Score=64.16 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCeEEEEEeC-CCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc----------------------------chhHHh
Q 033426 28 TKQLVVVDFTA-SWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE----------------------------LKSVAT 76 (119)
Q Consensus 28 ~~~~~vv~f~~-~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~----------------------------~~~~~~ 76 (119)
+++++||+||. .||+.|....+.|.++++++. ++.++.|..++ ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 68999999998 599999999999999998885 57777776542 225666
Q ss_pred hcCCC------cccE-EEEEeCCeEEEEEeCC-----CHHHHHHHHHHH
Q 033426 77 DWAVE------AMPT-FMFLKEGKIVDKVVGS-----KKEELQQTIAKH 113 (119)
Q Consensus 77 ~~~v~------~~P~-~~i~~~g~~~~~~~~~-----~~~~l~~~l~~~ 113 (119)
.||+. ..|+ |+|.++|+++....+. +.+++.+.|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77776 5886 5555799999876653 467777777654
No 154
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.92 E-value=3.7e-10 Score=72.72 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=81.2
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCcc
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAM 83 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~ 83 (119)
++.+..+ +++++...+ ..-.+++|++|||+.|+...+.++.++.--. ++.+..||...++.+..+|-++..
T Consensus 23 ~s~~~~~-~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaL 95 (248)
T KOG0913|consen 23 SSKLTRI-DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTAL 95 (248)
T ss_pred cceeEEe-cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEec
Confidence 3456666 467888887 3446889999999999999999999887654 589999999999999999999999
Q ss_pred cEEEEEeCCeEEEEEeCCCHHHHHHHHHH
Q 033426 84 PTFMFLKEGKIVDKVVGSKKEELQQTIAK 112 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~~~~~l~~~l~~ 112 (119)
|++...++|....+....+...+..++..
T Consensus 96 ptIYHvkDGeFrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 96 PTIYHVKDGEFRRYSGARDKNDFISFEEH 124 (248)
T ss_pred ceEEEeeccccccccCcccchhHHHHHHh
Confidence 99888899977665433378888877754
No 155
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.6e-08 Score=62.24 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=83.7
Q ss_pred ccccCCceeeeeehHhHHHHHhhchhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc---------
Q 033426 2 AAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD--------- 69 (119)
Q Consensus 2 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~--------- 69 (119)
.+..+.+..+++-.++-.+.+..++.+++++|++|| ..+++-|......|++...++. ++.++.|..|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~ 82 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFA 82 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHH
Confidence 455566666776666666667777899999999999 8999999999999999988875 5777777653
Q ss_pred ------------cchhHHhhcCCCc------------cc-EEEEEeCCeEEEEEeCCC----HHHHHHHHHHH
Q 033426 70 ------------ELKSVATDWAVEA------------MP-TFMFLKEGKIVDKVVGSK----KEELQQTIAKH 113 (119)
Q Consensus 70 ------------~~~~~~~~~~v~~------------~P-~~~i~~~g~~~~~~~~~~----~~~l~~~l~~~ 113 (119)
....+++.||+.. .+ ||+|.++|+++..+...+ .+++.+.|+++
T Consensus 83 ~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 83 EKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 3457888888744 23 688889999999885443 45666666554
No 156
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.89 E-value=1.5e-07 Score=55.86 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=77.9
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCccc-EE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMP-TF 86 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P-~~ 86 (119)
+..+++..+.++.+.. ..++.++|.|..+|-+.|..+.+.+.+.+++.++ ..++.+|.++.+.+.+.|++. -| |+
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 4577888899999874 6899999999999999999999999999999875 788899999999999999998 88 56
Q ss_pred EEEeCCeEEEEEe---------CC--CHHHHHHHHHHHh
Q 033426 87 MFLKEGKIVDKVV---------GS--KKEELQQTIAKHL 114 (119)
Q Consensus 87 ~i~~~g~~~~~~~---------~~--~~~~l~~~l~~~~ 114 (119)
++|-+++-+.--- +. +.+++...++...
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 6664554333212 22 3566766666554
No 157
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.1e-08 Score=67.20 Aligned_cols=111 Identities=21% Similarity=0.304 Sum_probs=88.3
Q ss_pred cccCCceeeeeehHhHHHHHhhchhCCCeEEEEEeC----CCCHhHHhhhHHHHHHHHhCC---------CeEEEEEeCc
Q 033426 3 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTA----SWCGPCRFIAPFLAELAKKLP---------NVLFLKVDVD 69 (119)
Q Consensus 3 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~~~~l~~~~~---------~v~~~~vd~~ 69 (119)
+...+.|+.++ .+.|.+.+.. ..++-.++++|.+ ..|.-|+.+..++.-+++.+. .+-|..||.+
T Consensus 36 ~ts~~~VI~~n-~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~ 113 (331)
T KOG2603|consen 36 WTSESGVIRMN-DDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD 113 (331)
T ss_pred ccCCCCeEEec-CcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc
Confidence 35678899996 4899999984 4778888888887 489999999999999998763 2678899999
Q ss_pred cchhHHhhcCCCcccEEEEEe--CCeEEE------EEeCCCHHHHHHHHHHHhh
Q 033426 70 ELKSVATDWAVEAMPTFMFLK--EGKIVD------KVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 70 ~~~~~~~~~~v~~~P~~~i~~--~g~~~~------~~~~~~~~~l~~~l~~~~~ 115 (119)
+.++..++++++.+|++++|. .|+... ...|..+|++.+|+++..+
T Consensus 114 e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 114 ESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred ccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 999999999999999999993 343332 2223358899999887653
No 158
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.88 E-value=7e-08 Score=53.40 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=57.0
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH---hhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA---TDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~ 109 (119)
+..|+.+||++|+++...|.+ .++.|..+|.+++++.. ...|...+|++++ ++ ....|.+.+.|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 668899999999999998854 37888888888766532 3447789999865 34 34558899999998
Q ss_pred HHHHhhhh
Q 033426 110 IAKHLATA 117 (119)
Q Consensus 110 l~~~~~~~ 117 (119)
+-.....+
T Consensus 73 ~~~~~~~~ 80 (81)
T PRK10329 73 HPAPHAAS 80 (81)
T ss_pred HHhhhhhc
Confidence 87776543
No 159
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.88 E-value=2.2e-08 Score=65.00 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=64.6
Q ss_pred hhCCCeE-EEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------------chhHH
Q 033426 26 NETKQLV-VVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------LKSVA 75 (119)
Q Consensus 26 ~~~~~~~-vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~~ 75 (119)
...++++ |+.|+++||+.|....+.+.+++.++. ++.++.|+.+. +..++
T Consensus 25 ~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 25 DYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred HHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 3467775 567789999999999999999999884 67777776543 23567
Q ss_pred hhcCCC-------cccE-EEEEeCCeEEEEEe-----CCCHHHHHHHHHHH
Q 033426 76 TDWAVE-------AMPT-FMFLKEGKIVDKVV-----GSKKEELQQTIAKH 113 (119)
Q Consensus 76 ~~~~v~-------~~P~-~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~ 113 (119)
+.||+. ..|+ |++.++|+++.... |.+.+++.+.|+.+
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778763 5786 44447999888653 33578888888765
No 160
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.86 E-value=6.4e-08 Score=62.37 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=64.0
Q ss_pred hhCC-CeE-EEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------------chhH
Q 033426 26 NETK-QLV-VVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------LKSV 74 (119)
Q Consensus 26 ~~~~-~~~-vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~ 74 (119)
+..+ +++ ++.|+++||+.|....+.+.++.+++. ++.++.|..+. +..+
T Consensus 21 d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~i 100 (203)
T cd03016 21 DYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREV 100 (203)
T ss_pred HHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHH
Confidence 3455 554 457789999999999999999998884 57777776543 2356
Q ss_pred HhhcCCC----ccc-----EEEEEeCCeEEEEEeC-----CCHHHHHHHHHHHh
Q 033426 75 ATDWAVE----AMP-----TFMFLKEGKIVDKVVG-----SKKEELQQTIAKHL 114 (119)
Q Consensus 75 ~~~~~v~----~~P-----~~~i~~~g~~~~~~~~-----~~~~~l~~~l~~~~ 114 (119)
++.||+. +.| +|+|.++|+++....+ .+.+++.+.|+.+-
T Consensus 101 a~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 101 AKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred HHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 7788875 233 4666689999887654 35778888887653
No 161
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.86 E-value=2.7e-08 Score=63.71 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=55.7
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC--------------------------------------
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-------------------------------------- 68 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-------------------------------------- 68 (119)
..+++.++.|+.++|++|+++.+.+.+ ...++.+..+..
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 457899999999999999999999887 223333333211
Q ss_pred -------ccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 69 -------DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 69 -------~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
+.+..+++++|+.++|+++ +.+|+. ..|. +.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1123678899999999986 788865 4577 677777654
No 162
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.85 E-value=5.7e-08 Score=64.52 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=59.6
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC--------------------------------------
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-------------------------------------- 68 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-------------------------------------- 68 (119)
...+.+|+.|+.+.|++|+++.+.+.++.+. +++.+..+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 4577889999999999999999998887665 3455544421
Q ss_pred ------------ccchhHHhhcCCCcccEEEEEe-CCeEEEEEeCC-CHHHHHHHHH
Q 033426 69 ------------DELKSVATDWAVEAMPTFMFLK-EGKIVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 69 ------------~~~~~~~~~~~v~~~P~~~i~~-~g~~~~~~~~~-~~~~l~~~l~ 111 (119)
+++..+.+++|+.++|++++-. +| .+....|. ..++|.+.|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0012467788999999987764 35 33456688 7888888764
No 163
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.85 E-value=2.6e-08 Score=64.72 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=63.7
Q ss_pred hCCCeEEE-EEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------------chhHHh
Q 033426 27 ETKQLVVV-DFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------LKSVAT 76 (119)
Q Consensus 27 ~~~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~~~ 76 (119)
..+++++| +|+++||+.|....+.|.+++.++. ++.++.++.+. +..+++
T Consensus 31 ~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 31 YKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred hCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 46887666 6679999999999999999999884 67777776542 235666
Q ss_pred hcCCC-------cccE-EEEEeCCeEEEEEe-----CCCHHHHHHHHHHH
Q 033426 77 DWAVE-------AMPT-FMFLKEGKIVDKVV-----GSKKEELQQTIAKH 113 (119)
Q Consensus 77 ~~~v~-------~~P~-~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~ 113 (119)
.||+. ..|+ |+|.++|+++.... |.+.+++.+.|+.+
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77763 3675 55557999888654 33678888888765
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.84 E-value=9.7e-08 Score=58.27 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=33.5
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~v 66 (119)
...++.|++|+.++||+|+.+.+.+.++..+++++.+...
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 3578899999999999999999999998888876555443
No 165
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.82 E-value=8.6e-08 Score=63.81 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.8
Q ss_pred CCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc----------------------------chhHHh
Q 033426 28 TKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE----------------------------LKSVAT 76 (119)
Q Consensus 28 ~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~----------------------------~~~~~~ 76 (119)
.++++|++|| +.||+.|....+.|.++++++. ++.++.|..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 6788888888 8999999999999999998884 56666665432 235777
Q ss_pred hcCCC-----cccE-EEEEeCCeEEEEEe-----CCCHHHHHHHHHHH
Q 033426 77 DWAVE-----AMPT-FMFLKEGKIVDKVV-----GSKKEELQQTIAKH 113 (119)
Q Consensus 77 ~~~v~-----~~P~-~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~ 113 (119)
.||+. ..|+ |+|.++|+++.... |.+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88875 4786 55557999888663 23577777777654
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.79 E-value=7.5e-08 Score=52.01 Aligned_cols=68 Identities=16% Similarity=0.358 Sum_probs=50.5
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc---CCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW---AVEAMPTFMFLKEGKIVDKVVGSKKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~---~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~ 109 (119)
+..|+.++|++|+++...|++ .++.|..+|.++++.....+ |..++|++++ +|+ ....|.+++.|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 357889999999999999875 26778888888776555544 8889999765 342 24667788887653
No 167
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.79 E-value=1.3e-07 Score=60.81 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=65.2
Q ss_pred HhhchhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc----------------------------
Q 033426 22 LQKSNETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------- 70 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------- 70 (119)
+..++..+++++|+|| +.||+.|......+.++.+++. ++.++.|+.+.
T Consensus 29 v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~ 108 (199)
T PTZ00253 29 ISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK 108 (199)
T ss_pred EeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence 4444567999999999 5889999998899999998885 67777776542
Q ss_pred chhHHhhcCCC------cccE-EEEEeCCeEEEEEeCC-----CHHHHHHHHHHH
Q 033426 71 LKSVATDWAVE------AMPT-FMFLKEGKIVDKVVGS-----KKEELQQTIAKH 113 (119)
Q Consensus 71 ~~~~~~~~~v~------~~P~-~~i~~~g~~~~~~~~~-----~~~~l~~~l~~~ 113 (119)
...+++.||+. .+|+ |++.++|+++....+. +.+++.+.|+.+
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 23567778874 3575 5555799988876553 445555555443
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=1.5e-07 Score=68.35 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=72.1
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
+..+.+.. -.++.-+..|.+++|++|..+...+++++...+++.+-.+|....++++.+|++.++|++++ ||+..
T Consensus 106 ~~~~~i~~--~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~- 180 (517)
T PRK15317 106 EVIEQIKA--LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF- 180 (517)
T ss_pred HHHHHHHh--cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE-
Confidence 44444432 24566688999999999999999999999999999999999999999999999999999865 55533
Q ss_pred EEeCC-CHHHHHHHHHH
Q 033426 97 KVVGS-KKEELQQTIAK 112 (119)
Q Consensus 97 ~~~~~-~~~~l~~~l~~ 112 (119)
+.|. +.+++.+.+.+
T Consensus 181 -~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 181 -GQGRMTLEEILAKLDT 196 (517)
T ss_pred -EecCCCHHHHHHHHhc
Confidence 3355 67777777665
No 169
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.79 E-value=8.5e-08 Score=49.91 Aligned_cols=55 Identities=31% Similarity=0.487 Sum_probs=41.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhH----HhhcCCCcccEEEEEeCCeE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSV----ATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~i~~~g~~ 94 (119)
|+.|+.+||++|+++...|++ . ++.+..+|.++.++. .+..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~-~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K-GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T-TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c-CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 578999999999999998833 2 577888888776433 33349999999776 6764
No 170
>PRK13189 peroxiredoxin; Provisional
Probab=98.78 E-value=1.4e-07 Score=61.57 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=63.0
Q ss_pred CCCeEEE-EEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc---------------------------chhHHhh
Q 033426 28 TKQLVVV-DFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE---------------------------LKSVATD 77 (119)
Q Consensus 28 ~~~~~vv-~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~---------------------------~~~~~~~ 77 (119)
.++.+++ +|+++||+.|....+.|.+++.++. ++.++.|..++ ...+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 6886655 6679999999999999999988884 67777665532 2356677
Q ss_pred cCCC-------cccE-EEEEeCCeEEEEEe-----CCCHHHHHHHHHHHh
Q 033426 78 WAVE-------AMPT-FMFLKEGKIVDKVV-----GSKKEELQQTIAKHL 114 (119)
Q Consensus 78 ~~v~-------~~P~-~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~~ 114 (119)
||+. .+|+ |+|.++|+++.... |.+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7764 4675 55557999887664 346788888887653
No 171
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.70 E-value=1.9e-06 Score=54.16 Aligned_cols=101 Identities=17% Similarity=0.288 Sum_probs=78.9
Q ss_pred CceeeeeehHhHHHHHhhchhCCCe-EEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCC--c
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQL-VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVE--A 82 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~-~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~--~ 82 (119)
+.+..++ .+++.... ..+.+ +++.|..........+...+++++.++++ +.|+.+|.+..+.+++.+|+. .
T Consensus 77 P~v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 77 PLVPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp TSCEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred ccccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence 3466665 56777777 35545 77778777788889999999999999875 999999999889999999998 8
Q ss_pred ccEEEEEe--CCeEEEEEeCC-CHHHHHHHHHH
Q 033426 83 MPTFMFLK--EGKIVDKVVGS-KKEELQQTIAK 112 (119)
Q Consensus 83 ~P~~~i~~--~g~~~~~~~~~-~~~~l~~~l~~ 112 (119)
+|+++++. +++......+. +.+.|.+||++
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999886 45433323555 89999999874
No 172
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.70 E-value=8.3e-07 Score=54.75 Aligned_cols=81 Identities=32% Similarity=0.459 Sum_probs=61.4
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC--C-CeEEEEEeCcc---------------------------------
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--P-NVLFLKVDVDE--------------------------------- 70 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~--~-~v~~~~vd~~~--------------------------------- 70 (119)
...+++|+.|+...|++|+++.+.+.++.+++ + .+.|...+.-.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 46788999999999999999999999998887 3 57776664310
Q ss_pred -----------------------------------chhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 033426 71 -----------------------------------LKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAK 112 (119)
Q Consensus 71 -----------------------------------~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~ 112 (119)
....+.+++|.++|+|++ ||+.+ .+. +.+++.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 014456779999999888 88774 455 89999999875
No 173
>PHA03050 glutaredoxin; Provisional
Probab=98.68 E-value=7.3e-08 Score=56.13 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=41.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc-cc----hhHHhhcCCCcccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-EL----KSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-~~----~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
|+.|..+|||+|+++...|+++.-+.+....+.++.. .. ..+.+.-|..++|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 7789999999999999999887655444444444431 12 23555568889999755 56543
No 174
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.66 E-value=6.6e-07 Score=65.01 Aligned_cols=91 Identities=14% Similarity=0.272 Sum_probs=72.2
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
+..+.+.. -.++.-+..|.++.|++|..+...+++++...|++..-.+|....++++.+|++.++|++++ ||+.+
T Consensus 107 ~~~~~~~~--~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~- 181 (515)
T TIGR03140 107 GIIDRIRR--LNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF- 181 (515)
T ss_pred HHHHHHHh--cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE-
Confidence 44444432 24566688999999999999999999999999999998999999999999999999999866 55433
Q ss_pred EEeCC-CHHHHHHHHHHH
Q 033426 97 KVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 97 ~~~~~-~~~~l~~~l~~~ 113 (119)
..|. +.+++.+.+.+.
T Consensus 182 -~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 182 -HNGRMDLAELLEKLEET 198 (515)
T ss_pred -EecCCCHHHHHHHHhhc
Confidence 3355 677776666544
No 175
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.66 E-value=2.1e-06 Score=51.61 Aligned_cols=106 Identities=16% Similarity=0.271 Sum_probs=77.5
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCC--CC-HhH-HhhhHHHHHHHHhCC-C-eEEEEEeCccchhHHhhcCC
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTAS--WC-GPC-RFIAPFLAELAKKLP-N-VLFLKVDVDELKSVATDWAV 80 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C-~~C-~~~~~~~~~l~~~~~-~-v~~~~vd~~~~~~~~~~~~v 80 (119)
..+.++++.+.+++.- ..++..+|.|.-+ .| ..+ ......+++++++++ . +.|+.+|.++...+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 4678888877766666 2356777766532 23 223 366789999999996 4 89999999999889999999
Q ss_pred Cc--ccEEEEEeCCeEEEE-EeCC-CHHHHHHHHHHHhhh
Q 033426 81 EA--MPTFMFLKEGKIVDK-VVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 81 ~~--~P~~~i~~~g~~~~~-~~~~-~~~~l~~~l~~~~~~ 116 (119)
.. +|+++++...+.... ..|. +.+.+.+|++..+.-
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 64 999988853321222 4455 899999999998753
No 176
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.65 E-value=2.1e-07 Score=59.63 Aligned_cols=105 Identities=19% Similarity=0.319 Sum_probs=85.1
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccE
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
-+.|+++++..+|...+... .+.-.++|..|-+.-+.|..+...+.=|+++||.++|.++-.... ....+|....+|+
T Consensus 137 ~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCce
Confidence 35799999999999999653 356677899999999999999999999999999999999876543 4568899999999
Q ss_pred EEEEeCCeEEEEEeCC--------CHHHHHHHHHH
Q 033426 86 FMFLKEGKIVDKVVGS--------KKEELQQTIAK 112 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~--------~~~~l~~~l~~ 112 (119)
++||++|..+..+... ....+++||..
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 9999999887754322 24556666654
No 177
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.65 E-value=5.5e-07 Score=56.41 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=31.9
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFL 64 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~ 64 (119)
.+++.|+.|+...||+|+.+.+.+.++..+++ ++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 68899999999999999999999999988876 34443
No 178
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.65 E-value=2.5e-07 Score=50.89 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=43.8
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc---hhHHhhcCCCcccEEEEEeCCeE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL---KSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~---~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
+.+.-|+.|+.+||++|+++...|++. ++.+..+|.++. ..+....|..++|.+++ +|+.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 344557789999999999999999743 566666777654 34555568899999754 6654
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.63 E-value=2.5e-07 Score=51.15 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=58.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeC--CeEEEEEeCC-CHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE--GKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~--g~~~~~~~~~-~~~~l~~~ 109 (119)
|++|+.+.|+-|..+...+.++.... ++.+..+|+++++.+..+|+. .+|.+.+-.. ........+. +.+.+.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999987776 488999999999999999996 8999766431 0112233345 89999998
Q ss_pred HH
Q 033426 110 IA 111 (119)
Q Consensus 110 l~ 111 (119)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.62 E-value=8.9e-07 Score=47.69 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=45.5
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh---HHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS---VATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~---~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~ 109 (119)
++.|..+||++|.++...|++. ++.+..+|.+++.. +....|..++|.+++ +|+.+. ..+++.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig-----g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG-----GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe-----CHHHHHHH
Confidence 6789999999999998888753 56676777765442 333458889999744 565432 35556665
Q ss_pred H
Q 033426 110 I 110 (119)
Q Consensus 110 l 110 (119)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.62 E-value=1.3e-07 Score=54.25 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=37.3
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh-------HHhhcCCCcccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS-------VATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~-------~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
++.|..+|||+|+++...|.++ ++.+..+|.+..+. +.+..|..++|.+++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 6679999999999999987765 34444555554322 233346789999644 66433
No 182
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.61 E-value=6.9e-07 Score=57.73 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=31.6
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHH---HHHHHhCC-CeEEEEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFL---AELAKKLP-NVLFLKV 66 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~---~~l~~~~~-~v~~~~v 66 (119)
.+++.|+.|++..||+|..+.+.+ +.+.+.++ ++.++.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 467889999999999999999876 78888886 5555543
No 183
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.58 E-value=4.1e-07 Score=50.04 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=42.1
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----hHHhhcCCCcccEEEEEeCCeE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----SVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
|+.|+++|||+|+.+.+.++++... ..++.++.+.+. .+.+..|..++|+++ -+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 5789999999999999999998664 456666665442 345566889999963 46644
No 184
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.58 E-value=2.5e-06 Score=58.31 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=75.0
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCH--hHHh---hhHHHHHHHHhC---CCeEEEEEeCccchhHHhhc
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCG--PCRF---IAPFLAELAKKL---PNVLFLKVDVDELKSVATDW 78 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~--~C~~---~~~~~~~l~~~~---~~v~~~~vd~~~~~~~~~~~ 78 (119)
..+++++ ..+|++.+ .+-+..+|+|+.|--. ..++ +...+-+|+++. .++.|..||..+...+++++
T Consensus 34 DRVi~Ln-eKNfk~~l----Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 34 DRVIDLN-EKNFKRAL----KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp --CEEE--TTTHHHHH----HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred cceEEcc-hhHHHHHH----HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 4577785 57999988 4678888999987532 2221 123344555543 48999999999999999999
Q ss_pred CCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 79 AVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 79 ~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
|+...+++.+|++|+++.+. |. +++-+..||-.+++.+
T Consensus 109 gv~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp T--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSSS
T ss_pred CccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhcccc
Confidence 99999999999999999987 55 9999999999988643
No 185
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.57 E-value=5.2e-07 Score=57.22 Aligned_cols=104 Identities=18% Similarity=0.375 Sum_probs=84.3
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCccc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMP 84 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P 84 (119)
.-+.|..|+ ..++-+.++.+ ..+-.++|..|...-+.|.-....++.++.+||.++|+.+-.+.. ...|.-...|
T Consensus 89 kfG~V~~IS-g~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 89 KFGEVFPIS-GPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred cccceeecc-chHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCC
Confidence 457889996 56888888775 679999999999999999999999999999999999999877664 4677788999
Q ss_pred EEEEEeCCeEEEEEeC------C--CHHHHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVG------S--KKEELQQTIAKH 113 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~------~--~~~~l~~~l~~~ 113 (119)
|+++|..|.+...+.| . +.++++.+|-+.
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999988766554432 3 467777776553
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.51 E-value=1.1e-06 Score=46.68 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=41.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhH----HhhcCCCcccEEEEEeCCeEEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSV----ATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
++.|+++||++|+++...+.+.. +.+..+|.+.++.. .+..+..++|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56789999999999999988764 66677777765543 33447778998643 675444
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.50 E-value=3.8e-06 Score=61.66 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=81.6
Q ss_pred eehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEe-C
Q 033426 13 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK-E 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~-~ 91 (119)
....+++..+.. -++...++.|+.+.|.+|..+...+++++...+.+.+...|..++.++++.|++...|++.+++ +
T Consensus 352 ~~~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 352 SLRQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDD 429 (555)
T ss_pred HHHHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCC
Confidence 334456666653 4677788889999999999999999999988888999888988889999999999999999984 5
Q ss_pred CeE-EEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 92 GKI-VDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 92 g~~-~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
|.. --++.|. .-.++..||..++.-+
T Consensus 430 ~~~~~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 430 GNYTGLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred CcccceEEEecCccHhHHHHHHHHHHhc
Confidence 532 2355566 6788888888887544
No 188
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.50 E-value=1.8e-06 Score=46.71 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=40.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH----hhcCCC-cccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA----TDWAVE-AMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~-~~P~~~i~~~g~~~ 95 (119)
++.|+.++|++|+++...|++. ++.+..+|.+.+++.. +..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5678999999999999999763 5677777777655443 334666 8998754 56443
No 189
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.48 E-value=1.6e-06 Score=50.21 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCC--CCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccchhHHhhcCCCcccE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTAS--WCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPT 85 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~--~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~P~ 85 (119)
...++ .++++..+ ..+...+++|.++ -++.+..+.-.+-+|.+.+++ .....++.+....+..+||+...|+
T Consensus 11 ~~~vd-~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 11 WPRVD-ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp EEEE--CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred Ceeec-hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCe
Confidence 44454 46777777 3566666666653 345666666788999999975 5666777777889999999999999
Q ss_pred EEEEeCCeEEEEEeCC
Q 033426 86 FMFLKEGKIVDKVVGS 101 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~ 101 (119)
++++++|+.+....|.
T Consensus 86 Lvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 86 LVFFRDGRYLGAIEGI 101 (107)
T ss_dssp EEEEETTEEEEEEESS
T ss_pred EEEEECCEEEEEecCe
Confidence 9999999999998886
No 190
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.47 E-value=9.1e-07 Score=48.47 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=39.6
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhh----cCCCcccEEEEEeCCeE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATD----WAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~P~~~i~~~g~~ 94 (119)
|..|+.+||++|+++...+++. ++.+..+|.+.++...+. .|..++|++++ +|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 4678899999999999999863 456666677666544333 47789999754 5643
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.47 E-value=2.3e-06 Score=46.23 Aligned_cols=56 Identities=20% Similarity=0.466 Sum_probs=41.8
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh----HHhhcCCCcccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS----VATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
++.|+.+||++|+++...|++ .++.+..+|.++.+. +.+..+...+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 567889999999999999886 257777788877654 444557788999755 56433
No 192
>PRK10824 glutaredoxin-4; Provisional
Probab=98.42 E-value=9.5e-07 Score=51.90 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH----hhcCCCcccEEEEEeCCeEE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA----TDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~i~~~g~~~ 95 (119)
||||+|+++...|..+. +.+..+|.+.++++. +.-|-..+|.+++ +|+.+
T Consensus 28 p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 69999999999988763 344445665554433 3336778999655 66544
No 193
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.36 E-value=8.3e-06 Score=46.59 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhH----HhhcCCCcccEEEEEeCCeE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSV----ATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~i~~~g~~ 94 (119)
+|||+|+++...|.++ ++.+..+|.++++.. .+..|...+|.+++ +|+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~ 77 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEF 77 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEE
Confidence 8999999999998775 455667787665543 33446778999755 5643
No 194
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.31 E-value=1.9e-05 Score=46.25 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=68.8
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHh---CC-CeEEEEEeCccchhHHhhcCCCc--ccEEEE
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK---LP-NVLFLKVDVDELKSVATDWAVEA--MPTFMF 88 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~---~~-~v~~~~vd~~~~~~~~~~~~v~~--~P~~~i 88 (119)
.++..... ..+.+..++|+. -..-..+.+.+++++++ ++ .+.|+.+|.+......+.||++. +|.+.+
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 6 FENAEELT----EEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccHHHHh----cCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 35566666 355555555662 23346788999999999 86 49999999998877999999997 899888
Q ss_pred EeCCe-EEEE-EeCC-CHHHHHHHHHHHhh
Q 033426 89 LKEGK-IVDK-VVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 89 ~~~g~-~~~~-~~~~-~~~~l~~~l~~~~~ 115 (119)
..... .... ..+. +.+.|.+|+++.+.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 85322 1221 3344 88999999998865
No 195
>PRK10638 glutaredoxin 3; Provisional
Probab=98.29 E-value=7e-06 Score=45.44 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=40.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh----HHhhcCCCcccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS----VATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
++.|..+||++|+++...+++. ++.+..+|.+.++. +.+..|..++|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6678899999999999998864 45566677765543 344557889998744 66444
No 196
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.28 E-value=2.7e-05 Score=44.06 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=66.0
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEE
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i 88 (119)
..+++.++++..+ ..+++++|-|+.+++. .....|.++++.++ ++.|..+. +..+.+.+++. .|++++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVL 70 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEE
Confidence 4677777788766 5788888889988887 57788888998885 67777665 34566777765 488888
Q ss_pred EeCC-eEEEEEeCC-CHHHHHHHHHH
Q 033426 89 LKEG-KIVDKVVGS-KKEELQQTIAK 112 (119)
Q Consensus 89 ~~~g-~~~~~~~~~-~~~~l~~~l~~ 112 (119)
|+.. .....+.|. +.+.|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHHHHh
Confidence 8642 222334555 68899999864
No 197
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.26 E-value=8.3e-06 Score=45.91 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCeEEEEEeC----CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhH----HhhcCCCcccEEEEEeCCeE
Q 033426 29 KQLVVVDFTA----SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSV----ATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 29 ~~~~vv~f~~----~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~P~~~i~~~g~~ 94 (119)
+++++|+-.+ +||++|+++...|++.. +.|..+|.+.++++ .+..|..++|.+++ +|+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEE
Confidence 4455554332 79999999999988764 55666676655543 34447789999744 6754
No 198
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.21 E-value=2.3e-05 Score=51.32 Aligned_cols=106 Identities=22% Similarity=0.342 Sum_probs=74.9
Q ss_pred ccCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCccch----------
Q 033426 4 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELK---------- 72 (119)
Q Consensus 4 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~~~---------- 72 (119)
+.++++..++. .....++... ..++|.|+.|.+-+||.-..-.+.+++++++|.+ +.|+.|.+.+.+
T Consensus 79 APns~vv~l~g-~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~ 156 (237)
T PF00837_consen 79 APNSPVVTLDG-QRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNN 156 (237)
T ss_pred CCCCceEeeCC-CcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCC
Confidence 56788888854 3334444332 5799999999999999999999999999999986 567777553311
Q ss_pred ------------------------------------hHHhhcCCCccc-EEEEEeCCeEEEEEe-CC---CHHHHHHHHH
Q 033426 73 ------------------------------------SVATDWAVEAMP-TFMFLKEGKIVDKVV-GS---KKEELQQTIA 111 (119)
Q Consensus 73 ------------------------------------~~~~~~~v~~~P-~~~i~~~g~~~~~~~-~~---~~~~l~~~l~ 111 (119)
.....|| ..| .+.++++|+++..-. |+ +.++++++|+
T Consensus 157 ~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~ 234 (237)
T PF00837_consen 157 PYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLE 234 (237)
T ss_pred ceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHH
Confidence 1112222 377 477778999877433 22 5899999998
Q ss_pred HH
Q 033426 112 KH 113 (119)
Q Consensus 112 ~~ 113 (119)
+.
T Consensus 235 ~~ 236 (237)
T PF00837_consen 235 KY 236 (237)
T ss_pred hc
Confidence 74
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.5e-06 Score=44.93 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=36.8
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----hHHhhc-CCCcccEEEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----SVATDW-AVEAMPTFMF 88 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~-~v~~~P~~~i 88 (119)
++.|..++||+|++....|.+ .++.|..++.+..+ +..++- |..++|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 677899999999999998882 25666666655443 334444 7899999766
No 200
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.2e-05 Score=46.40 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=38.6
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-hHHhh----cCCCcccEEEEEeCCeEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-SVATD----WAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-~~~~~----~~v~~~P~~~i~~~g~~~ 95 (119)
+|.|..+||++|+++...|.+ .-....++.+|.+++. ++-.. -+-..+|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 556999999999998888887 1124566666665543 22222 24568999666 67665
No 201
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.09 E-value=6.5e-05 Score=42.77 Aligned_cols=98 Identities=11% Similarity=0.216 Sum_probs=69.9
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEEeCcc--chhHHhhcCCC----
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDE--LKSVATDWAVE---- 81 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~vd~~~--~~~~~~~~~v~---- 81 (119)
+..|++..+|++++ ..++. +++.|..+ -..-......+.++++...+ -.+..||+.+ ...+|+.+.+.
T Consensus 3 ie~i~d~KdfKKLL---RTr~N-VLvLy~ks-~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~k 77 (112)
T cd03067 3 IEDISDHKDFKKLL---RTRNN-VLVLYSKS-AKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSK 77 (112)
T ss_pred cccccchHHHHHHH---hhcCc-EEEEEecc-hhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCC
Confidence 45788889999999 33444 33434333 33444556678888888764 5566788875 67899999998
Q ss_pred ccc-EEEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 033426 82 AMP-TFMFLKEGKIVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 82 ~~P-~~~i~~~g~~~~~~~~~-~~~~l~~~l~ 111 (119)
.-| .+..|++|.....+... +...+..|+.
T Consensus 78 p~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 78 PKPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CCcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 666 47788999888777766 7888888875
No 202
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.03 E-value=3.9e-05 Score=42.82 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=42.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeC--cc------------------------------chhHHhhcC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDV--DE------------------------------LKSVATDWA 79 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~--~~------------------------------~~~~~~~~~ 79 (119)
|.+|+.+.|++|..+.+.++++....+ ++.+..... .. +...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999975543 455554432 21 124567789
Q ss_pred CCcccEEEEEe
Q 033426 80 VEAMPTFMFLK 90 (119)
Q Consensus 80 v~~~P~~~i~~ 90 (119)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999988753
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=97.98 E-value=9.8e-05 Score=47.68 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=43.5
Q ss_pred HHHHHhhchhCCCeEEEEE---eCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH----hhcCCCcccEEEEEe
Q 033426 18 WNEQLQKSNETKQLVVVDF---TASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA----TDWAVEAMPTFMFLK 90 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~vv~f---~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~P~~~i~~ 90 (119)
..+.++....+++.++..- +.|+|++|+++...|++. ++.+..+|.++++++. +.-|-..+|.+.+
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI-- 174 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV-- 174 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 3344443334555444444 237999999998888854 5666677777665443 3336678898665
Q ss_pred CCeEE
Q 033426 91 EGKIV 95 (119)
Q Consensus 91 ~g~~~ 95 (119)
+|+.+
T Consensus 175 ~G~~I 179 (204)
T PTZ00062 175 NGELI 179 (204)
T ss_pred CCEEE
Confidence 56443
No 204
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.97 E-value=0.00015 Score=42.41 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=56.2
Q ss_pred CCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCc----ccEEEEEe-CC-eEEEEEeCC-CHHHHHHHH
Q 033426 40 WCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEA----MPTFMFLK-EG-KIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~----~P~~~i~~-~g-~~~~~~~~~-~~~~l~~~l 110 (119)
.-..-..+.+.+.+++++++ .+.|+.+|.++.....+.||++. .|.+.+.. ++ |.. ..... +.+.|.+|+
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~-~~~~~~t~e~i~~F~ 107 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYV-MEEEFSDVDALEEFL 107 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccC-CCcccCCHHHHHHHH
Confidence 33455678899999999998 59999999998878899999985 99988885 34 222 12234 779999998
Q ss_pred HHH
Q 033426 111 AKH 113 (119)
Q Consensus 111 ~~~ 113 (119)
++.
T Consensus 108 ~~f 110 (111)
T cd03073 108 EDF 110 (111)
T ss_pred HHh
Confidence 865
No 205
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.9e-05 Score=46.49 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=65.3
Q ss_pred HHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC--eEEEEEeCcc--------chh---HH-hhcCCC----
Q 033426 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDE--------LKS---VA-TDWAVE---- 81 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~--v~~~~vd~~~--------~~~---~~-~~~~v~---- 81 (119)
+.+..+..++++++|.-.|+.|+.-- -...++.|.++|.+ ..++...+.. +.+ +| ..|||+
T Consensus 16 ~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f 94 (162)
T COG0386 16 EPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMF 94 (162)
T ss_pred CCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeee
Confidence 34445568999999999999999844 66777888888864 4444443321 111 11 122222
Q ss_pred --------------------------------cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 82 --------------------------------AMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 82 --------------------------------~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
.+-.|++.++|+++.|+... ++++++..|+++++
T Consensus 95 ~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 95 SKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred eEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 13458888999999999877 78999999998876
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.81 E-value=0.0012 Score=38.99 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=61.6
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEEeC--CCCHhHHhhhHHHHHHH----HhCCCeEEEEEeCc-----cchhHHhhc
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDFTA--SWCGPCRFIAPFLAELA----KKLPNVLFLKVDVD-----ELKSVATDW 78 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~--~~C~~C~~~~~~~~~l~----~~~~~v~~~~vd~~-----~~~~~~~~~ 78 (119)
..+ +.-+|++.+ .+.+.++|.|-. |+-. -...|.+++ ...+++.+..|-+. +|.+++++|
T Consensus 7 v~L-D~~tFdKvi----~kf~~~LVKFD~ayPyGe----Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery 77 (126)
T PF07912_consen 7 VPL-DELTFDKVI----PKFKYVLVKFDVAYPYGE----KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERY 77 (126)
T ss_dssp EEE-STTHHHHHG----GGSSEEEEEEEESS--CH----HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHT
T ss_pred eec-cceehhhee----ccCceEEEEEeccCCCcc----hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHh
Confidence 445 346899999 578999999974 3322 234445555 33457888877653 578999999
Q ss_pred CC--CcccEEEEEeC-C-eEEEE-EeCC-CHHHHHHHHHHHh
Q 033426 79 AV--EAMPTFMFLKE-G-KIVDK-VVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 79 ~v--~~~P~~~i~~~-g-~~~~~-~~~~-~~~~l~~~l~~~~ 114 (119)
++ ..+|.+.+|.+ . ..+.. ..|. +.+.|.+|++...
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 99 56899888863 3 34433 1454 8999999998763
No 207
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.81 E-value=0.0001 Score=52.36 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=40.3
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH---hh---------cCCCcccEEEEEeCCe
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA---TD---------WAVEAMPTFMFLKEGK 93 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~---~~---------~~v~~~P~~~i~~~g~ 93 (119)
|+.|+.+|||+|+++...+.+. ++.+..+|+++++... .+ .|..++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6789999999999999888773 6777788887665322 22 36778999766 554
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.75 E-value=0.00084 Score=42.47 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEE
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL 64 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~ 64 (119)
.|.+|+...||+|-...+.+.++.+.++++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 378899999999999999999999999654443
No 209
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.75 E-value=0.00023 Score=43.99 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCeEEEEEe-CCCCHhHHhh-hHHHHHHHHhCC--Ce-EEEEEeCc-----------------------cchhHHhhcC
Q 033426 28 TKQLVVVDFT-ASWCGPCRFI-APFLAELAKKLP--NV-LFLKVDVD-----------------------ELKSVATDWA 79 (119)
Q Consensus 28 ~~~~~vv~f~-~~~C~~C~~~-~~~~~~l~~~~~--~v-~~~~vd~~-----------------------~~~~~~~~~~ 79 (119)
.++++||+|| +.||+.|... .+.|.+...++. ++ .++.+..+ .+..+++.||
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~yg 107 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALG 107 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcC
Confidence 6677777777 8999999998 999988888774 45 46666542 2346777777
Q ss_pred CCc-----------ccEEEEEeCCeEEEEEeCC
Q 033426 80 VEA-----------MPTFMFLKEGKIVDKVVGS 101 (119)
Q Consensus 80 v~~-----------~P~~~i~~~g~~~~~~~~~ 101 (119)
+.. ....++..+|+++......
T Consensus 108 v~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 108 LTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred CCccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 631 1333344578888765544
No 210
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00034 Score=51.95 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=57.9
Q ss_pred HHHhhchhCCCeEEEEEeCCCCHhHHhhhH------HHHHHHHhCCCeEEEEEeCccchhHHhhc--------CCCccc-
Q 033426 20 EQLQKSNETKQLVVVDFTASWCGPCRFIAP------FLAELAKKLPNVLFLKVDVDELKSVATDW--------AVEAMP- 84 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~~~~l~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P- 84 (119)
+.+..+..++||+++-+..+||..|+.+.. .+.++.++ +..-++||.++-|++.+.| |-.+.|
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPL 111 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPL 111 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCce
Confidence 345555689999999999999999998764 34444444 4777889999998888877 367899
Q ss_pred EEEEEeCCeEEE
Q 033426 85 TFMFLKEGKIVD 96 (119)
Q Consensus 85 ~~~i~~~g~~~~ 96 (119)
++++-.+|++..
T Consensus 112 tVfLTPd~kPFf 123 (667)
T COG1331 112 TVFLTPDGKPFF 123 (667)
T ss_pred eEEECCCCceee
Confidence 566668998776
No 211
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00026 Score=43.88 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=79.9
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCcc--------ch--
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDE--------LK-- 72 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~--------~~-- 72 (119)
....+++++-.+.-.+.+..+..+|++++|.--|+-|+.-..-...++.|.++|. ++.+....+.. +.
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHH
Confidence 5667888877776667777778999999999999999999988899999999986 45555555421 11
Q ss_pred --hHHhhcCCC-----------------------------------cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 73 --SVATDWAVE-----------------------------------AMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 73 --~~~~~~~v~-----------------------------------~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.+..+|+.. .+-.|++.++|+++.|+... ++..++.-|++++
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 122333331 13347788999999998766 5677777777766
Q ss_pred h
Q 033426 115 A 115 (119)
Q Consensus 115 ~ 115 (119)
.
T Consensus 170 ~ 170 (171)
T KOG1651|consen 170 A 170 (171)
T ss_pred c
Confidence 4
No 212
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.50 E-value=0.0049 Score=35.31 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=61.6
Q ss_pred eeeeeehHhHHHHHhhchh-CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC-CCeEEEEEeCccchhHHhhcCCCcccEE
Q 033426 9 VIGCHTVEAWNEQLQKSNE-TKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTF 86 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~-~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~ 86 (119)
+..|++..+++..+ . .+..++|-|+..--. .....|.++++.+ .++.|.... +..+...+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcE
Confidence 56777788888888 4 566666666654333 4567788888888 467775332 33556777774 6888
Q ss_pred EEEeC-CeEEEEE-eCC-CHHHHHHHHHHH
Q 033426 87 MFLKE-GKIVDKV-VGS-KKEELQQTIAKH 113 (119)
Q Consensus 87 ~i~~~-g~~~~~~-~~~-~~~~l~~~l~~~ 113 (119)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88854 2222223 455 889999998754
No 213
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0028 Score=41.82 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=27.0
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.+...+|+.++|++++. |+ .+.|. +.+++.+.|+...
T Consensus 206 ~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 45667899999998773 33 55567 6888888887654
No 214
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.34 E-value=0.0022 Score=40.54 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.3
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCC-eEEEEE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPN-VLFLKV 66 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~-v~~~~v 66 (119)
+|..|.|+.|-...|.+.++..++++ +.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 58899999999999999999999974 555444
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.15 E-value=0.0046 Score=38.00 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=38.5
Q ss_pred EEEEeCC------CCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh----HHhhcCC----CcccEEEEEeCCeEE
Q 033426 33 VVDFTAS------WCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS----VATDWAV----EAMPTFMFLKEGKIV 95 (119)
Q Consensus 33 vv~f~~~------~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v----~~~P~~~i~~~g~~~ 95 (119)
|+.|+++ +|++|+++...|+.+ ++.|-.+|.+.+++ +.+..+. ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4566676 999999999988765 56777788876543 3344444 67998655 56444
No 216
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.98 E-value=0.024 Score=32.61 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=59.9
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC-CCeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
+..+++.++++..+ ..++.++|-|+...-. .....+.++++.+ .++.|..... ..+...+++ .|+++
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~iv 69 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVV 69 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceE
Confidence 45677778888877 3566666666655333 4667888888888 4677754333 356778888 67777
Q ss_pred EEe---------CCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 88 FLK---------EGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 88 i~~---------~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
+|+ .+.. .+.|. +.+.|.+||...
T Consensus 70 l~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 70 LFRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence 772 2322 24555 788999998754
No 217
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.93 E-value=0.015 Score=36.34 Aligned_cols=64 Identities=27% Similarity=0.285 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcccEEEEEeC--CeEEEEEeC--CCHHHHHHHHHHHh
Q 033426 46 FIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKE--GKIVDKVVG--SKKEELQQTIAKHL 114 (119)
Q Consensus 46 ~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~--g~~~~~~~~--~~~~~l~~~l~~~~ 114 (119)
.....+.++++.+. ++.|+.+. +.++++.+++.. |++++|+. ++... +.| .+.+.|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~-y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVV-YDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEE-ESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCcee-cccccCCHHHHHHHHHHhc
Confidence 45577888888886 68888776 556888999988 99999976 33444 445 48999999998864
No 218
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.93 E-value=0.026 Score=32.04 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=57.4
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeE-
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKI- 94 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~- 94 (119)
.++...+. .-++.+.++.|..+. .+|......+++++...+.+.+...+..+ ..|++.+..+|+.
T Consensus 8 ~qL~~~f~--~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 8 QQLKAYLE--RLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHH--hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 45555554 346777777777766 99999999999999988877765433322 5799998876632
Q ss_pred EEEEeCC-CHHHHHHHHHHH
Q 033426 95 VDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 95 ~~~~~~~-~~~~l~~~l~~~ 113 (119)
--++.|. .-.++..+|..+
T Consensus 74 gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEecCCchhHHHHHHHh
Confidence 1345566 667777777654
No 219
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.87 E-value=0.026 Score=41.41 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=60.0
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
.++...+. .-++...++.|.. .|..|..+...+++++...+.+.+...+.+ ...|++.+..+|+..
T Consensus 8 ~~l~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~ 73 (517)
T PRK15317 8 TQLKQYLE--LLERPIELVASLD-DSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDT 73 (517)
T ss_pred HHHHHHHH--hCCCCEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccc
Confidence 45555554 2355555555545 899999999999999999887776442211 358999888765332
Q ss_pred -EEEeCC-CHHHHHHHHHHHhhhh
Q 033426 96 -DKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 96 -~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
-++.|. .-.++..||..++.-+
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~ 97 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVG 97 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhc
Confidence 355566 6788888888876543
No 220
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.83 E-value=0.02 Score=37.18 Aligned_cols=101 Identities=22% Similarity=0.330 Sum_probs=66.7
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHh-HHhhhHHHHHHHHhCC-----C--eEEEEEeCcc-----------------
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGP-CRFIAPFLAELAKKLP-----N--VLFLKVDVDE----------------- 70 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~~~~l~~~~~-----~--v~~~~vd~~~----------------- 70 (119)
++..+.+.....++++++|+|.=..|+. |--....+.++.++.. + +.++.+|-+.
T Consensus 54 d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~ 133 (207)
T COG1999 54 DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPR 133 (207)
T ss_pred cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCC
Confidence 3444445555568999999999888874 9988888888877664 2 4445555321
Q ss_pred ----------chhHHhhcCCC---------------cccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 71 ----------LKSVATDWAVE---------------AMPTFMFL-KEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 71 ----------~~~~~~~~~v~---------------~~P~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
..++++.|++. +...++++ .+|+....+.+. .++.+.+.|++++++
T Consensus 134 ~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 134 WIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 11344444443 23333333 589998888766 789999999888754
No 221
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.71 E-value=0.00056 Score=46.40 Aligned_cols=88 Identities=18% Similarity=0.297 Sum_probs=67.2
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC-ccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHH
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKE 104 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~ 104 (119)
.+..++-+.||++||+..+...+.+.-....++.+....++- ..-+...+.+++.+.|++.+.. ...-.+.-|. +..
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN-QTCPASYRGERDLA 152 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec-cccchhhcccccHH
Confidence 346788889999999999999999999988887655555433 3456789999999999976653 3333444455 789
Q ss_pred HHHHHHHHHhh
Q 033426 105 ELQQTIAKHLA 115 (119)
Q Consensus 105 ~l~~~l~~~~~ 115 (119)
.++++..+.+.
T Consensus 153 sLv~fy~~i~~ 163 (319)
T KOG2640|consen 153 SLVNFYTEITP 163 (319)
T ss_pred HHHHHHHhhcc
Confidence 99999888764
No 222
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.65 E-value=0.069 Score=35.11 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=31.4
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
..++++||+++|+|++ .+| ....|. +.+.+...|.++++..
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~---~~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK---YAVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEE-cCc---EeecCCCCHHHHHHHHHHHHhcc
Confidence 5677889999999988 333 334477 8999999999988654
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.63 E-value=0.073 Score=39.13 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe-E
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK-I 94 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~-~ 94 (119)
.++.+.+.. -++...++.|.. .|..|..+...+++++...+.+.+...+.+. ...|++.+..+|+ .
T Consensus 8 ~~l~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 8 AQLKSYLAS--LENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHh--cCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 455555642 355555555555 7999999999999999998877775444322 3569998887764 2
Q ss_pred EEEEeCC-CHHHHHHHHHHHhhhh
Q 033426 95 VDKVVGS-KKEELQQTIAKHLATA 117 (119)
Q Consensus 95 ~~~~~~~-~~~~l~~~l~~~~~~~ 117 (119)
--++.|. .-.++..||..++.-+
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~ 98 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVG 98 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhc
Confidence 2355566 6788888888876544
No 224
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.053 Score=34.74 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=59.5
Q ss_pred hhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc----------------------------cchhH
Q 033426 26 NETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD----------------------------ELKSV 74 (119)
Q Consensus 26 ~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~----------------------------~~~~~ 74 (119)
+..++.++++|| ++--.-|--....+.+.+.++. ++.++.+..| .+.++
T Consensus 30 d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~v 109 (194)
T COG0450 30 DYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEI 109 (194)
T ss_pred hhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhH
Confidence 445688899888 6666666666666666666653 5666666543 34578
Q ss_pred HhhcCCCcc----c---EEEEEeCCeEEEEEe-----CCCHHHHHHHHHHH
Q 033426 75 ATDWAVEAM----P---TFMFLKEGKIVDKVV-----GSKKEELQQTIAKH 113 (119)
Q Consensus 75 ~~~~~v~~~----P---~~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~ 113 (119)
++.||+-.- . +|+|.++|.+..... |.+.+++.+.|+.+
T Consensus 110 s~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 110 ARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 888887542 2 477778998776443 55788888888765
No 225
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0055 Score=33.06 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=38.6
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEE--e-------Cccch--hHHhhcCCCcccEEEEEeCCeEEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV--D-------VDELK--SVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~v--d-------~~~~~--~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
++|++..||.|..+.+.++++--.|.-|.+..- | .|+.+ +-++.+|--++|+++. .+|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 579999999999999888876544422222110 0 02222 2245667779999654 6776654
No 226
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.34 E-value=0.051 Score=29.12 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=41.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEe--CCeEEEEEeCCCHHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLK--EGKIVDKVVGSKKEELQQTI 110 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~--~g~~~~~~~~~~~~~l~~~l 110 (119)
+..|+.+.|++|+++.-.+....-.| .+..++......+ +.-+...+|+++.-. +|..+. ....|.++|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y---~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY---EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce---EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHHHH
Confidence 45678899999999997666553332 2222333222233 345667899986642 243221 345566666
Q ss_pred HHHh
Q 033426 111 AKHL 114 (119)
Q Consensus 111 ~~~~ 114 (119)
++.+
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 6654
No 227
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=96.31 E-value=0.077 Score=31.81 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=55.7
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhH-HhhhHHHHH-HHHhC-CC---eEEEEEeCccchhHHhhcC
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPC-RFIAPFLAE-LAKKL-PN---VLFLKVDVDELKSVATDWA 79 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C-~~~~~~~~~-l~~~~-~~---v~~~~vd~~~~~~~~~~~~ 79 (119)
+..+.++++.++.++.+. .....++|..-+ -|+=- -..+|-... +.... |+ ..|...|.+-.....+.|.
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~---~~~GTtlVvVNS-VCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALK---NKEGTTLVVVNS-VCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp TTT-EE--SHHHHHHHHH---H--SEEEEEEE--SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTST
T ss_pred HcCccccCCHHHHHHHHh---CCCCcEEEEEec-cccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcC
Confidence 456788999999999994 355666665544 45422 234444433 33322 33 1222233333333444442
Q ss_pred --CCcccEEEEEeCCeEEEEEe-----CCCHHHHHHHHHHHhh
Q 033426 80 --VEAMPTFMFLKEGKIVDKVV-----GSKKEELQQTIAKHLA 115 (119)
Q Consensus 80 --v~~~P~~~i~~~g~~~~~~~-----~~~~~~l~~~l~~~~~ 115 (119)
..+-|++.+|++|+++.... |.+++.|..-|...+.
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 45789999999999988543 5567888877776654
No 228
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.30 E-value=0.0072 Score=34.79 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
+..|+.++|++|+++...+++. ++.|-.+|..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 3578899999999998877763 55565666644
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.24 E-value=0.024 Score=29.99 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=37.7
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEEEeCCeEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
+.|+.++|++|+++.-.+.+..-. ..+..+|... .+++.+..+...+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 467889999999987777655433 3444555433 345556667889999754 346443
No 230
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.24 E-value=0.099 Score=30.28 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=57.0
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC-CCeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
+..|++.++++..+. ..++.++|-|+...-. .....+.++++.+ .++.|+.... ..+...+++.. |.++
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vv 71 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLV 71 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceE
Confidence 567888888888872 3326666666654332 4567788888888 4687754333 35667888764 5556
Q ss_pred EEe---------CCeEEEEEe-CCCHHHHHHHHHH
Q 033426 88 FLK---------EGKIVDKVV-GSKKEELQQTIAK 112 (119)
Q Consensus 88 i~~---------~g~~~~~~~-~~~~~~l~~~l~~ 112 (119)
+|+ .+....... +.+.++|.+||+.
T Consensus 72 l~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 72 VFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred EECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 662 233333222 2234559999875
No 231
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.19 E-value=0.12 Score=31.40 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=52.9
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCc----ccEEEEEeCCeEEEEEeCC-CH
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEA----MPTFMFLKEGKIVDKVVGS-KK 103 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~----~P~~~i~~~g~~~~~~~~~-~~ 103 (119)
...-++.+++|.|+=|+.+...++ ..++.+-.+..++...+-++++|.. -=|.+| +|+.+. |- ..
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCH
Confidence 445577899999999999988877 1266777777788888888898863 334444 785554 44 66
Q ss_pred HHHHHHHHH
Q 033426 104 EELQQTIAK 112 (119)
Q Consensus 104 ~~l~~~l~~ 112 (119)
+.+..+|.+
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 777777654
No 232
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=96.10 E-value=0.0055 Score=35.70 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=39.8
Q ss_pred HHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc
Q 033426 21 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD 69 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~ 69 (119)
.+..+..+|++++|.-.|+.|+.-. -...|++|.++|. ++.++...+.
T Consensus 13 ~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn 62 (108)
T PF00255_consen 13 PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN 62 (108)
T ss_dssp EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence 3445568999999999999999988 8889999999996 6777777664
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.09 E-value=0.016 Score=34.04 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=25.9
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK 72 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~ 72 (119)
..|+.++|++|+++...+++ .++.+..+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 46889999999999988877 25667777765543
No 234
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.09 E-value=0.011 Score=32.02 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.0
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc----chhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE----LKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQ 108 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~ 108 (119)
+..++.++|++|+++.-.+.+.. +.+-.++.+. .+++.+..+...+|+++...+|.. -.....|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHH
Confidence 34677899999999887776653 3333334332 234444446678999754334422 224555666
Q ss_pred HHHH
Q 033426 109 TIAK 112 (119)
Q Consensus 109 ~l~~ 112 (119)
+|++
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 6654
No 235
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.06 E-value=0.16 Score=30.90 Aligned_cols=96 Identities=9% Similarity=0.247 Sum_probs=66.1
Q ss_pred hHHHHHhhc----hhCCCeEEEEEeCCCC----HhHHhhh--HHHHHHHHhCCCeEEEEEeCccch--------------
Q 033426 17 AWNEQLQKS----NETKQLVVVDFTASWC----GPCRFIA--PFLAELAKKLPNVLFLKVDVDELK-------------- 72 (119)
Q Consensus 17 ~~~~~~~~~----~~~~~~~vv~f~~~~C----~~C~~~~--~~~~~l~~~~~~v~~~~vd~~~~~-------------- 72 (119)
.+.+.+..+ ..+.|+.+|+..++.- ..|+... +.+.+..++ +..+..-|.....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 456666655 6789999999999866 4566554 455555554 5666667765431
Q ss_pred ----hHHhhcCCCcccEEEEE-eCC---eEEEEEeCC-CHHHHHHHHHHHh
Q 033426 73 ----SVATDWAVEAMPTFMFL-KEG---KIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 73 ----~~~~~~~v~~~P~~~i~-~~g---~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
...+.++...+|.+.+. +.. .++.+..|. +++++...|...+
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 24556789999986666 322 678888999 8999988887654
No 236
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.94 E-value=0.088 Score=35.27 Aligned_cols=96 Identities=22% Similarity=0.382 Sum_probs=62.9
Q ss_pred HHhhchhCCCeEEEEEeCCCCHh-HHhhhHHHHHHHHhCC---Ce----EEEEEeCcc----------------------
Q 033426 21 QLQKSNETKQLVVVDFTASWCGP-CRFIAPFLAELAKKLP---NV----LFLKVDVDE---------------------- 70 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~~~~l~~~~~---~v----~~~~vd~~~---------------------- 70 (119)
.+...+..||.++++|.-+.||. |-.....+.++.++.. ++ .|+.+|-+.
T Consensus 131 ~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTG 210 (280)
T KOG2792|consen 131 RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTG 210 (280)
T ss_pred eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccC
Confidence 34444678999999999999985 8877777766665432 32 466676421
Q ss_pred ----chhHHhhcCCCc----------------ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 71 ----LKSVATDWAVEA----------------MPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 71 ----~~~~~~~~~v~~----------------~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
...+++.|.|-. +=.+++..+|+.+..+... +++++.+.|.+++.+
T Consensus 211 T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 124555554422 1123333689999877554 799999999887764
No 237
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.87 E-value=0.037 Score=29.19 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=32.9
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.++.++|++|++++-.+....-.+ ....++........+..+-..+|+++. .+|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~---~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~ 57 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPV---EQIILQNDDEATPIRMIGAKQVPILEK-DDGS 57 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCe---EEEECCCCchHHHHHhcCCCccCEEEe-CCCe
Confidence 567899999998887776553332 233344443333344555667999744 3453
No 238
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.68 E-value=0.024 Score=33.03 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.0
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL 71 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~ 71 (119)
..|+.++|++|+++...|++. ++.|-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 468899999999999887763 566666776543
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.63 E-value=0.02 Score=33.50 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 30 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
|.++|.|..|-|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 567999999999999999999999999985
No 240
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.60 E-value=0.031 Score=33.66 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=22.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD 69 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 69 (119)
+..|+.++|++|+++...+++. ++.|-.+|+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeecc
Confidence 5578899999999988777654 4555555543
No 241
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.57 E-value=0.29 Score=32.38 Aligned_cols=43 Identities=30% Similarity=0.447 Sum_probs=36.5
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHh-----CCCeEEEEEeC
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKK-----LPNVLFLKVDV 68 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~-----~~~v~~~~vd~ 68 (119)
...|+++||-+-..+|..|..-...|+.|..+ +++|.|+.|+-
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 35799999999999999999988888888744 45799999985
No 242
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=95.43 E-value=0.11 Score=34.66 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=30.3
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLF 63 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~ 63 (119)
..||+.+++..+.|||+|...+=.+-....+|+++.+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l 92 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSL 92 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeee
Confidence 5799999999999999999988666666667776633
No 243
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=95.43 E-value=0.035 Score=28.43 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=33.7
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch--hHHhhcCCCcccEEEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK--SVATDWAVEAMPTFMF 88 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~P~~~i 88 (119)
..|+.++|+.|++....++...-. .....++..... .+.+..+...+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357789999999888887766433 233344443322 2455667888998755
No 244
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=95.43 E-value=0.29 Score=29.48 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
..+++.+..+...+-++++. .-+.- .-+.....+.++...-.. ....-+|.++++|+|+.+|+|++.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlR-G~~~~-~~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIR-GLLDN-GFKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEe-CCCCC-CHHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCC
Confidence 46666776654445444332 22222 224455555555544322 2333468899999999999999987764
No 245
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=95.24 E-value=0.16 Score=27.38 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=46.2
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCccchhHHhhcCCCcccEEEE
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~P~~~i 88 (119)
.+..|-+...+..+.....+.++-+++. ...+-.||..+++.+++.+++--+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 3445556666888888889988877763 48888899999999999999999999643
No 246
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.13 E-value=0.038 Score=31.97 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=24.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
+.+|+.++|+.|+++...+++- ++.|-.+|+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~ 33 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRK 33 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEeccc
Confidence 3578899999999988877654 55555666544
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=95.13 E-value=0.064 Score=28.20 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=36.4
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEEEeCCe
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
..|+.++|+.|+++.-.+....-.+ ....++.. ..+++.+......+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 3677899999999998877764433 23334432 2345566667778999865 3453
No 248
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=94.94 E-value=0.095 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=24.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
+.+|+.++|+.|+++...+++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCC
Confidence 4578899999999998888763 45555566543
No 249
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.88 E-value=0.66 Score=33.42 Aligned_cols=97 Identities=13% Similarity=0.239 Sum_probs=58.5
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhh-HHHHHHH--HhC-CCeEEEEEeCccc--hhHHhhcCCCcccEEEEE-
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIA-PFLAELA--KKL-PNVLFLKVDVDEL--KSVATDWAVEAMPTFMFL- 89 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~-~~~~~l~--~~~-~~v~~~~vd~~~~--~~~~~~~~v~~~P~~~i~- 89 (119)
++-..|..+..++. ++|.|-+-.....+.+. -.+.... ... ..+..++|+..+. ..+..-|.+-.+|++.++
T Consensus 7 nipeAIa~aK~kka-lfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKA-LFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHhhcCCe-EEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 34455655544444 44444444445555544 2332221 111 2355555665443 346677889999985444
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 90 KEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 90 ~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
..|..+....|. +.++|...|++..
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHHHH
Confidence 789999999999 8899998887753
No 250
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.61 E-value=0.2 Score=28.88 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC-C-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC--CH
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKL-P-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS--KK 103 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~-~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~--~~ 103 (119)
++.+++=.|.+..-+..+.....+.++-+++ + ...+-.||..+++.+++.+++--+||++=. .-..+.+..|. +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~-~P~P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKI-LPPPVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhc-CCCCcceeecccccH
Confidence 4567777777888899999999999887765 3 377778999999999999999999995432 34455566666 34
Q ss_pred HHH
Q 033426 104 EEL 106 (119)
Q Consensus 104 ~~l 106 (119)
+.+
T Consensus 83 ~kV 85 (103)
T PRK09301 83 EKV 85 (103)
T ss_pred HHH
Confidence 444
No 251
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=94.60 E-value=0.5 Score=27.88 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=55.0
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEE-eCccc-----------hhHHhhcCCC--cccEEEEEe
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKV-DVDEL-----------KSVATDWAVE--AMPTFMFLK 90 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~v-d~~~~-----------~~~~~~~~v~--~~P~~~i~~ 90 (119)
.+++++||+==++.-+.-+.....+++-...+. ++.++.+ +.... ..+.+.|++. ++-.+++.+
T Consensus 8 w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGK 87 (118)
T PF13778_consen 8 WKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGK 87 (118)
T ss_pred CcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 345544443224455666666666666444443 5666554 32222 2678888855 444566778
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 91 EGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 91 ~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
+|.+..+.... +.++|-+.|+.+
T Consensus 88 DG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 88 DGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCcEEEecCCCCCHHHHHHHHhCC
Confidence 99999998888 899999998864
No 252
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.57 E-value=0.22 Score=27.83 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=54.1
Q ss_pred CeEEEEEeCCCCHhHHhhhHHHHHHHHhC-C-CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC
Q 033426 30 QLVVVDFTASWCGPCRFIAPFLAELAKKL-P-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS 101 (119)
Q Consensus 30 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~-~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~ 101 (119)
.+++=.|.+...+.++.....+.++-+++ + ...+-.||..++|.+++.+++--+||++=. .-..+.+..|.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeecc
Confidence 45555667888889999999998887765 3 377778999999999999999999995433 33445556666
No 253
>PRK12559 transcriptional regulator Spx; Provisional
Probab=94.52 E-value=0.088 Score=31.71 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=22.2
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+..|+.++|+.|++....|++. ++.|-.+|+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEe
Confidence 5678899999999988776654 444444444
No 254
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.22 E-value=0.61 Score=27.32 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=42.5
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
...+++.+..+... +..+|+=.-+.- .=+.....+.++..+-+.. ....-+|.++++|+|+.+|++++-++
T Consensus 10 ~~~L~~l~~~a~~~-~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERA-GVVVVFRGFPDG-SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhC-CcEEEEECCCCC-CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 35667777665444 333333333322 3344445555555554333 33344678999999999999988766
No 255
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=94.22 E-value=0.11 Score=27.38 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFM 87 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~ 87 (119)
..|+.++|+.|++..-.++...-.+ ....+|... .+.+.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 4678899999999987775543332 233344432 23455556777899764
No 256
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=94.17 E-value=0.2 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc----chhHHhhcCCCcccEEEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE----LKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~i 88 (119)
..|+.++|+.|++..-.++...-. .....++..+ .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 467899999999888777765443 3334455322 355666667778999854
No 257
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.49 Score=33.63 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
++-+.++. -++..-+=-|++-.|..|-.+...++-++--.|++.-..||..-..+-.+.-+|..+|++++ ||....
T Consensus 106 ~vieqik~--i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg 181 (520)
T COG3634 106 DVIEQIKA--IDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFG 181 (520)
T ss_pred HHHHHHHh--cCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhc
Confidence 34444432 46666677778889999999999999999888999999999987777788889999999654 554332
Q ss_pred EEeCC-CHHHHHHHHHH
Q 033426 97 KVVGS-KKEELQQTIAK 112 (119)
Q Consensus 97 ~~~~~-~~~~l~~~l~~ 112 (119)
.|. +.++|.+.|..
T Consensus 182 --~GRmtleeilaki~~ 196 (520)
T COG3634 182 --QGRMTLEEILAKIDT 196 (520)
T ss_pred --ccceeHHHHHHHhcC
Confidence 244 66777666654
No 258
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=93.97 E-value=0.07 Score=33.62 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=34.6
Q ss_pred HHHhhchhCCCeEEEEEeCCCCH-hHHhhhHHHHHHHHhC----CCeEEEEEeCc
Q 033426 20 EQLQKSNETKQLVVVDFTASWCG-PCRFIAPFLAELAKKL----PNVLFLKVDVD 69 (119)
Q Consensus 20 ~~~~~~~~~~~~~vv~f~~~~C~-~C~~~~~~~~~l~~~~----~~v~~~~vd~~ 69 (119)
+.+.....+||+++|.|.-..|+ .|-.....+.++.++. .++.++.|.+|
T Consensus 43 ~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 43 KTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp SEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 33444457899999999999995 5887777777766544 25777766654
No 259
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.17 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=35.2
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEEEEeC--C-CHHHHHHHHHHHhh
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVDKVVG--S-KKEELQQTIAKHLA 115 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~~~~~--~-~~~~l~~~l~~~~~ 115 (119)
.+++++++.++||+++-+||+....-.| . +.+.+..++.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 5788999999999999999988777777 3 67888888777664
No 260
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.22 Score=31.37 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=31.9
Q ss_pred CCceeeeeehHhHHHHHhhc-hhCCCeEEEEEe-CCCCHhHHhhhH----HHHHHHHhCCCeEEEEEeC
Q 033426 6 EGQVIGCHTVEAWNEQLQKS-NETKQLVVVDFT-ASWCGPCRFIAP----FLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~-~~~~~~~vv~f~-~~~C~~C~~~~~----~~~~l~~~~~~v~~~~vd~ 68 (119)
+..+.+++-.++-...+... ...+++++++|| +..-|-|.+... .++++.+. +..++.+..
T Consensus 66 Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~ 132 (211)
T KOG0855|consen 66 GDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSG 132 (211)
T ss_pred CCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeecc
Confidence 34455555444444444332 234668889998 455566665444 44555443 244444443
No 261
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=93.74 E-value=0.54 Score=25.01 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=46.8
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 113 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~ 113 (119)
.++.++|++|+++.-.++...-. ..+..++..+ ...+.+..+...+|++. .+|..+. +...|.++|++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~---~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP---YELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE---EEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCe---EEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 36789999999988766654332 4455555544 35566677788999986 4575333 456677777766
Q ss_pred hh
Q 033426 114 LA 115 (119)
Q Consensus 114 ~~ 115 (119)
..
T Consensus 71 ~~ 72 (75)
T PF13417_consen 71 YP 72 (75)
T ss_dssp ST
T ss_pred cC
Confidence 54
No 262
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=93.33 E-value=0.22 Score=30.02 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=22.0
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+..|+.++|+.|+++...+++- ++.|-.+|+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEEC
Confidence 4578899999999988766543 455555554
No 263
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.20 E-value=0.47 Score=26.27 Aligned_cols=53 Identities=8% Similarity=0.116 Sum_probs=34.1
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc-hhHHhhcCCCcccEEEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL-KSVATDWAVEAMPTFMF 88 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~-~~~~~~~~v~~~P~~~i 88 (119)
+..|+.+.|++|+++.-.+....-. ..+..++.... ..+.+..+...+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4456788999999887776665333 33444554433 33555667778999865
No 264
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.16 E-value=1.1 Score=26.77 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhCCCeEEEEEeCccchh----------HHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhh
Q 033426 47 IAPFLAELAKKLPNVLFLKVDVDELKS----------VATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 47 ~~~~~~~l~~~~~~v~~~~vd~~~~~~----------~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~ 115 (119)
+...++.|.++ ++.+.+.+..+++. +.+.-|...+|-+++ ||+++..-.=++.++|.+|+.--..
T Consensus 29 ~a~~~~~Lk~~--gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 29 FAADLDWLKEQ--GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp HHHHHHHHHHT--T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GG
T ss_pred HHHHHHHHHhC--CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCcc
Confidence 33444445443 79999999877652 334458889998666 8988876322289999999865443
No 265
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=92.52 E-value=1.9 Score=28.00 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=49.0
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEE--EEeC-------cc---------chhHHhhcCCC--cccEEEEEeCCe
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFL--KVDV-------DE---------LKSVATDWAVE--AMPTFMFLKEGK 93 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~--~vd~-------~~---------~~~~~~~~~v~--~~P~~~i~~~g~ 93 (119)
=+|++-.|..|-.....|.+|.++. ++..+ .||+ |. -...+..++.. .+|.+++ ||+
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG~ 79 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NGR 79 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TTT
T ss_pred eEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CCe
Confidence 3577889999999999999999994 64443 5654 11 11334455444 5899877 665
Q ss_pred EEEEEeCCCHHHHHHHHHHHhhh
Q 033426 94 IVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
.- ..|.+...+...|.+....
T Consensus 80 ~~--~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 80 EH--RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp EE--EETT-HHHHHHHHHHHHHT
T ss_pred ee--eeccCHHHHHHHHHHhhcc
Confidence 43 3477889999999888765
No 266
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.58 E-value=0.34 Score=30.81 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=25.4
Q ss_pred hhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 72 KSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 72 ~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
...+.+.|+.++|+|++ +|+.+ ..|. +.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~~--~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKYA--VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeEe--ecCCCCHHHHHHHh
Confidence 35567889999999888 55432 4577 788887765
No 267
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.30 E-value=0.46 Score=27.47 Aligned_cols=57 Identities=14% Similarity=0.339 Sum_probs=37.3
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCC--cccEEEE-EeCCe
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVE--AMPTFMF-LKEGK 93 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~--~~P~~~i-~~~g~ 93 (119)
||.-+|+.|......+.+... ...+.|+.+-......+...+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999999999888832 335777666444444445666664 3444333 46775
No 268
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=90.95 E-value=2 Score=25.07 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC---CeEEEEEeCccchhHHhhc----CCC-cccEEEEEe----CCeEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP---NVLFLKVDVDELKSVATDW----AVE-AMPTFMFLK----EGKIV 95 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~---~v~~~~vd~~~~~~~~~~~----~v~-~~P~~~i~~----~g~~~ 95 (119)
-+...++-|--+.-+.-..+.+.+.++++.+. ++.|+.||-++.|-+...| +|. +-|.+=+.. ++.=.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 45777888889999999999999999999874 6999999999988766544 332 357654442 22222
Q ss_pred EEEe--C-CCHHHHHHHHHHHh
Q 033426 96 DKVV--G-SKKEELQQTIAKHL 114 (119)
Q Consensus 96 ~~~~--~-~~~~~l~~~l~~~~ 114 (119)
.... . .+.++|+.||+..+
T Consensus 99 ~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccccCcHHHHHHHHHhhC
Confidence 2211 2 36899999998754
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.61 E-value=0.69 Score=29.13 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=24.8
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
|.+|+.+.||+|-...+.++++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678899999999999999999999984
No 270
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.34 E-value=1.1 Score=23.34 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
..|+.+.|+.|+++.-.++...-. .....++.. ..+.+.+......+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 357789999999887777665433 333344432 2234445556678999864 35433
No 271
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=90.23 E-value=3.1 Score=26.00 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=28.1
Q ss_pred hHHhhcCCCccc-EEEEE-eCCeEEEEEeCC-CHHHHHHHHHH
Q 033426 73 SVATDWAVEAMP-TFMFL-KEGKIVDKVVGS-KKEELQQTIAK 112 (119)
Q Consensus 73 ~~~~~~~v~~~P-~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~ 112 (119)
.+...|++..-- .++++ ++|++++...|. +.+++.+.|.-
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 345555555432 34444 799999999999 99998888754
No 272
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.39 E-value=0.62 Score=29.28 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=23.8
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l 110 (119)
..+.++|+.++|+|++ +|+ .+.|. ..+.+...|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 5667889999999988 674 44577 566666654
No 273
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=89.20 E-value=0.68 Score=27.13 Aligned_cols=22 Identities=9% Similarity=0.168 Sum_probs=17.7
Q ss_pred EEEEeCCCCHhHHhhhHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAEL 54 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l 54 (119)
+..|+.|.|..|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578899999999988776654
No 274
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=89.14 E-value=0.77 Score=26.86 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=22.4
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
.+|+.+.|..|++....+++. ++.+..+|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di 31 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKY 31 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEec
Confidence 478899999999998887763 444555554
No 275
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=88.87 E-value=2.3 Score=22.55 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=35.4
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEEEeCCeE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
..|+.+.|+.|+++.-.+++..-. ..+..++.. ..+.+.+......+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~---~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLR---CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCC---CEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 467788999998887555554333 344455542 234466666778899985 36654
No 276
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=4.8 Score=25.71 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=52.1
Q ss_pred HHhhchhCCCeEEEEEeC-CCCHhHHhhhHHHHHHHHhCC----CeEEEEEeC--------------------------c
Q 033426 21 QLQKSNETKQLVVVDFTA-SWCGPCRFIAPFLAELAKKLP----NVLFLKVDV--------------------------D 69 (119)
Q Consensus 21 ~~~~~~~~~~~~vv~f~~-~~C~~C~~~~~~~~~l~~~~~----~v~~~~vd~--------------------------~ 69 (119)
.+...++.+++++++||. ++---|--..-.|...+.++. .|..+.+|. |
T Consensus 25 e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD 104 (196)
T KOG0852|consen 25 EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSD 104 (196)
T ss_pred EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeec
Confidence 344446789999999984 333334322333333333332 344444442 4
Q ss_pred cchhHHhhcCCC----ccc---EEEEEeCCeEEEEE-----eCCCHHHHHHHHHHH
Q 033426 70 ELKSVATDWAVE----AMP---TFMFLKEGKIVDKV-----VGSKKEELQQTIAKH 113 (119)
Q Consensus 70 ~~~~~~~~~~v~----~~P---~~~i~~~g~~~~~~-----~~~~~~~l~~~l~~~ 113 (119)
.+.++++.||+- +.+ .|++..+|...... .|.+.++..+.++..
T Consensus 105 ~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 105 LNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred cchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 466899999873 555 35555677655422 244667776666543
No 277
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=87.94 E-value=0.97 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=21.6
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
..|+.+.|..|+++...+++. ++.|..+|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di 31 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEY 31 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEec
Confidence 568899999999987666554 444555555
No 278
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=87.52 E-value=6.7 Score=26.37 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=44.3
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEeCC-----CCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhh--
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTAS-----WCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATD-- 77 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~-----~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~-- 77 (119)
..+.+.++ +.-.+.+.. -++...|..|++. .-..-..+...+++.....+ ++.+-.+|.+.++...++
T Consensus 6 ~~k~ysLS--~~T~~~L~~--L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~ 81 (271)
T PF09822_consen 6 ANKRYSLS--DQTKKVLKS--LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKA 81 (271)
T ss_pred CCCCccCC--HHHHHHHHh--CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHH
Confidence 34566665 344555543 3455556666665 23444455555566665556 699999999776665555
Q ss_pred --cCCCc
Q 033426 78 --WAVEA 82 (119)
Q Consensus 78 --~~v~~ 82 (119)
+|+..
T Consensus 82 ~~~Gi~~ 88 (271)
T PF09822_consen 82 KEYGIQP 88 (271)
T ss_pred HhcCCCc
Confidence 77765
No 279
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=87.24 E-value=1.1 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhC
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKL 58 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~ 58 (119)
.+..|+.|.|..|+++...+++..-+|
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 366788999999999998877654443
No 280
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=86.67 E-value=0.42 Score=26.40 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=41.1
Q ss_pred eCCCCHhHHhhhHHHHHHHHhC-C-CeEEEEEeCccchhHHhhcCCCcccEEE
Q 033426 37 TASWCGPCRFIAPFLAELAKKL-P-NVLFLKVDVDELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 37 ~~~~C~~C~~~~~~~~~l~~~~-~-~v~~~~vd~~~~~~~~~~~~v~~~P~~~ 87 (119)
-+..-+....+...++.+.+.+ + .+.+-.||..+++.+++.+++--+||++
T Consensus 4 V~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 4 VAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp ESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred ECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3445566778888888887775 3 5888899999999999999999999854
No 281
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=86.55 E-value=1.8 Score=30.57 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=53.9
Q ss_pred ceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhh----HHHHHHHHhCC----CeEEEEEeCc-cch--hHHh
Q 033426 8 QVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIA----PFLAELAKKLP----NVLFLKVDVD-ELK--SVAT 76 (119)
Q Consensus 8 ~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~----~~~~~l~~~~~----~v~~~~vd~~-~~~--~~~~ 76 (119)
++.++..-.+..+.+.. .+..+.++ .||.|.+-. ....++.+.+. .+++..+-+- ..+ .-..
T Consensus 245 P~~EV~va~~IL~slgl--r~~g~~Ii-----sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~a 317 (360)
T PRK00366 245 PVEEVKVGQEILQSLGL--RSRGPEVI-----SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEA 317 (360)
T ss_pred CHHHHHHHHHHHHHcCC--ccCCCeEE-----ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhC
Confidence 44444433344444432 23445555 455555433 33344444443 2555555553 211 2345
Q ss_pred hcCCCccc-EEEEEeCCeEEEEEeCCC-HHHHHHHHHHHh
Q 033426 77 DWAVEAMP-TFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 114 (119)
Q Consensus 77 ~~~v~~~P-~~~i~~~g~~~~~~~~~~-~~~l~~~l~~~~ 114 (119)
.+|+.+-+ ..++|.+|+++....+.. .++|.+.|++..
T Consensus 318 DIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~~ 357 (360)
T PRK00366 318 DIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEAYA 357 (360)
T ss_pred cEeEecCCCceEEEECCEEeeeeChHhHHHHHHHHHHHHH
Confidence 66777665 588999999999876653 556666665543
No 282
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=86.09 E-value=5.8 Score=24.20 Aligned_cols=69 Identities=12% Similarity=0.216 Sum_probs=48.7
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcc-c-EEEEEeCCeEEE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAM-P-TFMFLKEGKIVD 96 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~-P-~~~i~~~g~~~~ 96 (119)
..+++..+.+|.-.|+.|......+.+.-.. +.+.|..+..+....+....++..- + ++++.++|+...
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 4577888899999999999966555443222 2588998888888888888777643 4 555657775443
No 283
>COG3411 Ferredoxin [Energy production and conversion]
Probab=84.78 E-value=3.7 Score=21.53 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.1
Q ss_pred ccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhhhh
Q 033426 83 MPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATA 117 (119)
Q Consensus 83 ~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~~~ 117 (119)
=|++++|.+| .=+.+-+++...+.+++++...
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHhCC
Confidence 4899999998 2222348999999999998643
No 284
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=84.74 E-value=3 Score=29.50 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=50.8
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHH----HhCC----CeEEEEEeCccc-hh--HH
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELA----KKLP----NVLFLKVDVDEL-KS--VA 75 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~----~~~~----~v~~~~vd~~~~-~~--~~ 75 (119)
.++.++..--+..+.+.. ...++-+| .||.|-+..=.+.++. +... ++++..+-+-.| |. -.
T Consensus 244 ~p~~EV~va~~IL~al~l--R~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~ 316 (359)
T PF04551_consen 244 DPVEEVKVAFEILQALGL--RKRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKD 316 (359)
T ss_dssp SCCCHHHHHHHHHHHTTS--S-SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTT
T ss_pred CchHHHHHHHHHHHHhCc--CcCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhh
Confidence 344444333333333322 33455555 5777765554444443 3333 577777776533 21 23
Q ss_pred hhcCCC-ccc-EEEEEeCCeEEEEE-eCCC-HHHHHHHHHHH
Q 033426 76 TDWAVE-AMP-TFMFLKEGKIVDKV-VGSK-KEELQQTIAKH 113 (119)
Q Consensus 76 ~~~~v~-~~P-~~~i~~~g~~~~~~-~~~~-~~~l~~~l~~~ 113 (119)
..||+. +-| ..++|++|+.+.+. .... .++|.+.|+++
T Consensus 317 AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 317 ADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp SSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHHHHHHH
T ss_pred CceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHHHHHhh
Confidence 456666 555 48899999999988 5554 57777777664
No 285
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=84.37 E-value=4.9 Score=26.89 Aligned_cols=84 Identities=25% Similarity=0.306 Sum_probs=53.5
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEE--EEEeC-------c---------cchhHHhhcCCCcccEEEEEe
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLF--LKVDV-------D---------ELKSVATDWAVEAMPTFMFLK 90 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~--~~vd~-------~---------~~~~~~~~~~v~~~P~~~i~~ 90 (119)
...++=.|++-.|..|-.....+.+++.+- ++.- +.||+ | ........|+-.+++|=-.+-
T Consensus 41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 41 PLGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred CceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 345555677889999999999999998874 4322 45664 1 112345566666655422333
Q ss_pred CCeEEEEEeCCCHHHHHHHHHHHhh
Q 033426 91 EGKIVDKVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 91 ~g~~~~~~~~~~~~~l~~~l~~~~~ 115 (119)
+|+...+ |.+...|+..|+..-+
T Consensus 120 nGr~~~~--Gad~~~i~~~i~a~~~ 142 (261)
T COG5429 120 NGRVHAN--GADPGAIEDAIAAMAR 142 (261)
T ss_pred echhhhc--CCCHHHHHHHHHHhhc
Confidence 6654443 6788888888877654
No 286
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=84.27 E-value=9.5 Score=25.10 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=43.1
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHh-hcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVAT-DWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~-~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
.|+.||++.-.+. .+-....+.-||....++... -.+....|.+.+ +|+. -.+.+.|+.+|++-+..
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~-----~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW-----VTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce-----eccHHHHHHHHHHhcCC
Confidence 6888888776665 333356677789887776664 446666777555 3311 12567788888776654
No 287
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=10 Score=25.09 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=45.6
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHh--CCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQT 109 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~--~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~ 109 (119)
+=.|.-.+|..|-.+...+ .++ .++++| ++....+.+.-+-+|-++|++++ +|+.+.. ++ ++++++..
T Consensus 13 VkI~~HktC~ssy~Lf~~L---~nkgll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~ 83 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYL---ENKGLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESI 83 (265)
T ss_pred EEEEEecchHHHHHHHHHH---HhcCCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHH
Confidence 3345566777777655544 333 345655 46666666777778999999644 7876653 45 77777776
Q ss_pred HHH
Q 033426 110 IAK 112 (119)
Q Consensus 110 l~~ 112 (119)
++-
T Consensus 84 ~~G 86 (265)
T COG5494 84 LSG 86 (265)
T ss_pred HcC
Confidence 654
No 288
>PRK10853 putative reductase; Provisional
Probab=83.51 E-value=2.3 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=22.3
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+..|+.+.|..|+++..-+++- ++.+-.+|+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeeh
Confidence 4567899999999998887753 444444554
No 289
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=82.80 E-value=6.3 Score=27.78 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=58.2
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhH----HHHHHHHhCC----CeEEEEEeCccc---hhHH
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAP----FLAELAKKLP----NVLFLKVDVDEL---KSVA 75 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~----~~~~l~~~~~----~v~~~~vd~~~~---~~~~ 75 (119)
.++.++.--.+..+.+.. .+..+.++ -||.|-+..- .++++.+++. .+.+..+-+-.| ....
T Consensus 237 ~P~~EV~V~~eILqslgl--R~~~v~~i-----aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~ 309 (361)
T COG0821 237 DPVEEVKVAQEILQSLGL--RSRGVEVI-----ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKH 309 (361)
T ss_pred CchhhhHHHHHHHHHhCc--cccCceEE-----ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhc
Confidence 344455444444444422 23444444 6777765443 3344444432 244444443211 1123
Q ss_pred hhcCCCc--ccEEEEEeCCeEEEEEeCCC-HHHHHHHHHHHhhh
Q 033426 76 TDWAVEA--MPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHLAT 116 (119)
Q Consensus 76 ~~~~v~~--~P~~~i~~~g~~~~~~~~~~-~~~l~~~l~~~~~~ 116 (119)
..+|+.+ .|...+|.+|+.+.+..+.+ .+++.+.+++..+.
T Consensus 310 AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel~~~i~~~~~~ 353 (361)
T COG0821 310 ADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEELEALIEAYAEE 353 (361)
T ss_pred cceeeecCCCCeeEEEECCeEEEecChhhHHHHHHHHHHHHHHH
Confidence 4456543 57888999999999988774 78888888877654
No 290
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=82.66 E-value=3.5 Score=26.91 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=21.8
Q ss_pred chhHHhhcCCCcccEEEEEeCCeEEEEEeCC
Q 033426 71 LKSVATDWAVEAMPTFMFLKEGKIVDKVVGS 101 (119)
Q Consensus 71 ~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~ 101 (119)
+|.++++|+|+.+|+|++.-. .-.....|.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GN 180 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGN 180 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEec
Confidence 678999999999999988733 222344454
No 291
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=82.29 E-value=1.9 Score=32.37 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=46.7
Q ss_pred HHHHhhchhCCCeEEEEEeCCCCHhHHhhhH-HH-----HHHHHhCCCeEEEEEeCccchhHHh--------hcCCCccc
Q 033426 19 NEQLQKSNETKQLVVVDFTASWCGPCRFIAP-FL-----AELAKKLPNVLFLKVDVDELKSVAT--------DWAVEAMP 84 (119)
Q Consensus 19 ~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~~-----~~l~~~~~~v~~~~vd~~~~~~~~~--------~~~v~~~P 84 (119)
++.+..+..++||+++-..-+.|..|+.+.. .| .++.++ +..-+.||.++-|++-+ ..|-.+.|
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilne--nfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE--NFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh--hhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 4455566689999999999999999997763 22 233332 34455677777776555 33777888
Q ss_pred EEEEE
Q 033426 85 TFMFL 89 (119)
Q Consensus 85 ~~~i~ 89 (119)
.-+++
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 75555
No 292
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=81.11 E-value=15 Score=25.23 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=54.4
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-----hHHhhcCCCcccEEEEE
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-----SVATDWAVEAMPTFMFL 89 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-----~~~~~~~v~~~P~~~i~ 89 (119)
...|...+........-....++.+.|..-..-.....+|+.+. ++.++.-+..++. ++++..+. |++.+-
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~~---~t~~Ie 242 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYHIE 242 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCTT---CEEEES
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhCC---CEEEeC
Confidence 45666666554445555544588889988888888888888775 4444433332221 34444433 676654
Q ss_pred ----------eCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 90 ----------KEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 90 ----------~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
++.+.+....|. +++.+.+.+-+.+.
T Consensus 243 ~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 243 TADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp SGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 234577888888 78877777766654
No 293
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=80.60 E-value=3.7 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=21.3
Q ss_pred CcccEEEEEe-CCeEEEEEe--CCCHHHHHHHHHHHh
Q 033426 81 EAMPTFMFLK-EGKIVDKVV--GSKKEELQQTIAKHL 114 (119)
Q Consensus 81 ~~~P~~~i~~-~g~~~~~~~--~~~~~~l~~~l~~~~ 114 (119)
..-|+++++. +|+.+.+.. +.+.+++.++|.+..
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 3568888884 788777554 448999999998754
No 294
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=79.75 E-value=5.5 Score=22.93 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=19.8
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
|+.+.|..|+++...+++ .++.+-.+|..+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhh
Confidence 578999999999888875 256666677754
No 295
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=79.61 E-value=3.7 Score=24.56 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=18.5
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHH
Q 033426 32 VVVDFTASWCGPCRFIAPFLAEL 54 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l 54 (119)
.+.+|+-+.|..|++....|++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678889999999998877654
No 296
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=79.26 E-value=3.3 Score=25.99 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=17.1
Q ss_pred hHHhhcCCCcccEEEEEeCCe
Q 033426 73 SVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~ 93 (119)
..+.++||.++|+|++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 566788999999999986654
No 297
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=79.03 E-value=3.2 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=21.5
Q ss_pred CccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 68 VDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 68 ~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
++....+.++|+++++|+++. .+|+...
T Consensus 171 fdQ~g~Lt~rF~I~~VPavV~-q~g~~l~ 198 (202)
T TIGR02743 171 FDQHGKLTQKFGIKHVPARVS-QEGLRLR 198 (202)
T ss_pred EcCCchHhhccCceeeceEEE-ecCCEEE
Confidence 466778999999999999754 6665543
No 298
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=78.04 E-value=13 Score=23.85 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEEEeCCeEE
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
+...+-.|+.+.|+.|+++.=.+++..- +.....+|... .+++.+......+|+++. +|..+
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l 69 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTL 69 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEe
Confidence 3334556667899999998876665432 23444555543 235555566778999853 55433
No 299
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=77.44 E-value=4.4 Score=26.15 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=23.7
Q ss_pred hHHhhcCCCcccEEEEEeC-CeEEEEEeCC-CHHHHHHHH
Q 033426 73 SVATDWAVEAMPTFMFLKE-GKIVDKVVGS-KKEELQQTI 110 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~-g~~~~~~~~~-~~~~l~~~l 110 (119)
..+.+.|+.++|+|++-.+ |+ -..+-|. ..+.+++.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHHh
Confidence 3456679999999988643 42 1244466 566666654
No 300
>PRK10026 arsenate reductase; Provisional
Probab=76.70 E-value=5 Score=24.56 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEEeCCCCHhHHhhhHHHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAEL 54 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l 54 (119)
+..|+.+.|..|++....+++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678899999999998877664
No 301
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.31 E-value=8.9 Score=19.87 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=34.1
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc-cchhHHhhcCCCcccEEEEEeCCeE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~-~~~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
.|+.+.|+.|++..-.+....... ......+|.. ..+.+.+......+|.++. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 567889999998877666521111 2344445432 2345555567778998754 35533
No 302
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=74.84 E-value=10 Score=19.76 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=30.4
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCC-CcccEEEE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAV-EAMPTFMF 88 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v-~~~P~~~i 88 (119)
.++.+.|+.|++..-.+....-.+ ....++... .+...+.... ..+|++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 466789999999888776654333 333344432 2333343443 68998753
No 303
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=74.27 E-value=9.4 Score=21.02 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=22.7
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 83 MPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 83 ~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
-.++.+|..|+++-. |. +.+++.+.+++.+.
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKILP 80 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 457899999998876 55 77777777766643
No 304
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=74.22 E-value=13 Score=20.86 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-hHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-SVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
.+|++|++++=.+.+..- ...+..+|....+ .+.+......+|+++ .+|..+ .+...|.++|++....
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHHHHHHccC
Confidence 589999998876665421 2344556655544 455556678899754 245322 3456677777776543
No 305
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=74.00 E-value=8.9 Score=20.12 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=34.2
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc---cchhHHhhcCCCcccEEEEEeCCe
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD---ELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.|+.+.|+.|.+..-.++...- ...+..+|.. ..+...+......+|++.. .+|.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~ 60 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGF 60 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCC
Confidence 4667888999888766665422 2444455543 2345556667788999754 3454
No 306
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=73.11 E-value=6 Score=25.93 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=21.7
Q ss_pred CccchhHHhhcCCCcccEEEEE-eCCeEEE
Q 033426 68 VDELKSVATDWAVEAMPTFMFL-KEGKIVD 96 (119)
Q Consensus 68 ~~~~~~~~~~~~v~~~P~~~i~-~~g~~~~ 96 (119)
++....+.++|+++++|.++.- .+|+...
T Consensus 169 fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 169 FDQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred EcCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 4666779999999999997541 6676544
No 307
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=72.86 E-value=13 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.1
Q ss_pred HHhhcCCCcccEEEEE
Q 033426 74 VATDWAVEAMPTFMFL 89 (119)
Q Consensus 74 ~~~~~~v~~~P~~~i~ 89 (119)
-+-.+|++.+|.+++.
T Consensus 75 ~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 75 DAWSLGITKYPAVVFD 90 (114)
T ss_pred HHHHhCccccCEEEEc
Confidence 4567899999998775
No 308
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.41 E-value=11 Score=23.82 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=22.7
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
+|+..-||+|--..+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5778899999999999999999984
No 309
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=70.94 E-value=34 Score=24.13 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEeCccchhHHhhcCCCcc
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAM 83 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~ 83 (119)
.+.++.++.+.++++.... .+.+.+|.+|-+...+.-.. +.+++..+. ++.|. |.+.+. .....-.+.
T Consensus 106 ~s~~i~Ef~sl~~l~n~~~---p~K~~vIgyF~~kdspey~~----~~kva~~lr~dc~f~-V~~gD~---~~~~~~~~~ 174 (375)
T KOG0912|consen 106 LSDPINEFESLDQLQNLDI---PSKRTVIGYFPSKDSPEYDN----LRKVASLLRDDCVFL-VGFGDL---LKPHEPPGK 174 (375)
T ss_pred hccHHHHHHhHHHHHhhhc---cccceEEEEeccCCCchHHH----HHHHHHHHhhccEEE-eecccc---ccCCCCCCC
Confidence 4566788888888888872 35667777777677666444 444554443 45554 333222 112222333
Q ss_pred cEEEEEeCC-eEEE-EEeCC--CHHHHHHHHHH
Q 033426 84 PTFMFLKEG-KIVD-KVVGS--KKEELQQTIAK 112 (119)
Q Consensus 84 P~~~i~~~g-~~~~-~~~~~--~~~~l~~~l~~ 112 (119)
+ +++++.+ .... .+.|. +.+.+..||++
T Consensus 175 ~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~d 206 (375)
T KOG0912|consen 175 N-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQD 206 (375)
T ss_pred c-eEEeCCCcCCcCcccccccccHHHHHHHHHh
Confidence 3 3444433 2222 35566 68999999875
No 310
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=70.80 E-value=13 Score=19.32 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=32.9
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEE
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFM 87 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~ 87 (119)
+-.|+.+.|+.|++..-.+....-. .....++.. ..+.+.+......+|.+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 3456677899999888777665433 333344432 234556666778899874
No 311
>PRK10387 glutaredoxin 2; Provisional
Probab=70.40 E-value=18 Score=22.99 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=30.7
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
.++.+.|++|.++.-.++...-.| ....++...........+...+|+++. .+|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 456778999998877665543332 223334332222223334567999754 35543
No 312
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=69.90 E-value=21 Score=22.92 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=46.8
Q ss_pred hHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc----C-CCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 43 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW----A-VEAMPTFMFL-KEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 43 ~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~----~-v~~~P~~~i~-~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.-..|...++.+..-.+.++.+.|.+.....+...+ . +...|+..++ -||+...--.|. +...-.++.++++
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v~ 97 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKVL 97 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHHh
Confidence 345677777777777777888888887765544433 3 2346766666 489888866676 4555555555554
No 313
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=69.86 E-value=22 Score=21.53 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEe
Q 033426 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67 (119)
Q Consensus 31 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 67 (119)
.+-++-..+-|..|.. .++++...||++.+..++
T Consensus 98 ~i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 98 TIDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred eEEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 3334444688888885 777888889988776553
No 314
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=69.12 E-value=25 Score=21.94 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=41.5
Q ss_pred CCceeeeeehHhHHHHHhhchhCCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 6 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFT-ASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 6 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+.+..+.+-...-.+.+...+..+|..++..+ +-+-+-|.---..|++.+.++.++.++-|..
T Consensus 21 Gd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~ 84 (158)
T COG2077 21 GDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISM 84 (158)
T ss_pred CCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeC
Confidence 33444343333333344444466777766665 7788999999999999999998766665544
No 315
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=68.99 E-value=7.3 Score=23.93 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=14.4
Q ss_pred chhHHhhcCCCcccEEE
Q 033426 71 LKSVATDWAVEAMPTFM 87 (119)
Q Consensus 71 ~~~~~~~~~v~~~P~~~ 87 (119)
..++++++++.++|.++
T Consensus 120 gddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHHhCCCcccEEe
Confidence 45789999999999864
No 316
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=67.89 E-value=21 Score=22.93 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=29.5
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
++.+.|++|+++.-.+....-.| ....++.++.....+..+...+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 55778999998776665543333 122233333222334445578998643 3554
No 317
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=67.88 E-value=8.4 Score=24.08 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=22.4
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
+|+..-||+|--..+.++++..+++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5778899999999999999998885
No 318
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.83 E-value=5.6 Score=28.02 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=43.2
Q ss_pred CceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHH-hhhHHHHHHHHhC---C-CeEEEEEeCccc-h--hHHhhc
Q 033426 7 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCR-FIAPFLAELAKKL---P-NVLFLKVDVDEL-K--SVATDW 78 (119)
Q Consensus 7 ~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~-~~~~~~~~l~~~~---~-~v~~~~vd~~~~-~--~~~~~~ 78 (119)
.++.++..-.+..+.+.. .+..+-++ .=|+|+-|+ .+....+++.+.+ + .+.+..+-+-.| | .-...+
T Consensus 235 dP~~EV~va~~IL~slgl--r~~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADi 310 (346)
T TIGR00612 235 DPTHEVPVAFEILQSLGL--RARGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADI 310 (346)
T ss_pred CcHHHHHHHHHHHHHcCC--CcCCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCe
Confidence 344444433333333322 23445555 334444444 2223333333333 2 366665555322 1 123455
Q ss_pred CCCcc-c-EEEEEeCCeEEEEEeC
Q 033426 79 AVEAM-P-TFMFLKEGKIVDKVVG 100 (119)
Q Consensus 79 ~v~~~-P-~~~i~~~g~~~~~~~~ 100 (119)
|+.+- + ..++|++|+++....+
T Consensus 311 GIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 311 GISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred eeecCCCCceEEEECCEEeEecCH
Confidence 66654 4 5788999998776543
No 319
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=67.06 E-value=20 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=23.4
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
++++|+-||++-. |. +.+++...++++++.
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHHHH
Confidence 5788899998876 67 788888888777643
No 320
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=66.95 E-value=18 Score=20.40 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=23.8
Q ss_pred cccEEEEEe--CCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 82 AMPTFMFLK--EGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 82 ~~P~~~i~~--~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
.-|++++|. +| .-+...+++++...|++++..
T Consensus 52 ~gp~vvvyP~~~g---~wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 52 FAGNVIIYPKGDG---IWYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred cCCEEEEEeCCCe---eEEeecCHHHHHHHHHHHhcC
Confidence 479999999 76 333334899999999888754
No 321
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=66.92 E-value=10 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHhCCCeEEEE---EeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 53 ELAKKLPNVLFLK---VDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 53 ~l~~~~~~v~~~~---vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
.+..++++.+|+. +|.+-.-.+...-+-..+|.+++|++|-
T Consensus 124 ~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL 167 (172)
T PTZ00151 124 HILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGL 167 (172)
T ss_pred HHHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccc
Confidence 3444566777773 3333333333333444699999999883
No 322
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=65.58 E-value=7.6 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=14.3
Q ss_pred chhHHhhcCCCcccEEE
Q 033426 71 LKSVATDWAVEAMPTFM 87 (119)
Q Consensus 71 ~~~~~~~~~v~~~P~~~ 87 (119)
..++++++++.++|.++
T Consensus 82 gddLa~rL~l~hYPvLi 98 (105)
T TIGR03765 82 GDDLAERLGLRHYPVLI 98 (105)
T ss_pred HHHHHHHhCCCcccEEE
Confidence 45789999999999864
No 323
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=65.48 E-value=17 Score=18.75 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=30.1
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc--hhHHhhcCCCcccEEEEEeCCeE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL--KSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
.++.+.|+.|+++.-.++...-.| ....++..+. ..+........+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 59 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKK 59 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEE
Confidence 345577888887776666554333 2333443221 22334445668998753 4543
No 324
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=63.75 E-value=25 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.0
Q ss_pred HHhhcCCCcccEEEEE
Q 033426 74 VATDWAVEAMPTFMFL 89 (119)
Q Consensus 74 ~~~~~~v~~~P~~~i~ 89 (119)
.+-.+|++++|.+++.
T Consensus 76 ~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 76 DAWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHHcCCccCCEEEEc
Confidence 3567899999998774
No 325
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=63.74 E-value=20 Score=18.72 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=33.9
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc----chhHHhhcCCCcccEEEEEeCCe
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE----LKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
..|+.+.++.|+++.-.++...-.+ ....++..+ .+.+........+|++.. +|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPF---EECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCc---EEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 3567788999988876666554333 334454422 234556667788999753 554
No 326
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=63.50 E-value=14 Score=21.71 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-hHHhhcC--CCcccEEEEEe
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-SVATDWA--VEAMPTFMFLK 90 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-~~~~~~~--v~~~P~~~i~~ 90 (119)
.|++|..+.-.+...-.--..+.+.+|+...-. .+....| -.+.|.+++-.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 588888766555443333235888889986533 3444443 35799976653
No 327
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=9 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEE
Q 033426 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66 (119)
Q Consensus 31 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~v 66 (119)
..+.|.+.|-|+.|-.+.|.++++.+.. ++.+.-.
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~-gl~~~L~ 36 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP-GLEVVLH 36 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC-CceEEEe
Confidence 3578899999999999999999999885 5544433
No 328
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=61.48 E-value=27 Score=19.66 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=32.7
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEEe
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVD 67 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~vd 67 (119)
|.++.+.+++.. + +.+.+.+|-+|-+...+. ...+++++..++ ++.|+..-
T Consensus 1 Ikef~~~~eL~~-i---d~~kr~iIgYF~~~~~~e----Y~~f~kvA~~lr~dC~F~v~~ 52 (91)
T cd03070 1 IKEFRNLDELNN-V---DRSKRNIIGYFESKDSDE----YDNFRKVANILRDDCSFLVGF 52 (91)
T ss_pred CceecCHHHHHh-h---CcCCceEEEEEcCCCChh----HHHHHHHHHHHhhcCeEEEEe
Confidence 356677777776 4 356666677776655444 456777777775 58787443
No 329
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=61.26 E-value=28 Score=19.68 Aligned_cols=68 Identities=19% Similarity=0.417 Sum_probs=36.5
Q ss_pred CCHhHHhhhH------HHHH-HHHhCCC--eEEEEEeCccch------hHHhhc--CCCcccEEEEEeCCeEEEEEeCC-
Q 033426 40 WCGPCRFIAP------FLAE-LAKKLPN--VLFLKVDVDELK------SVATDW--AVEAMPTFMFLKEGKIVDKVVGS- 101 (119)
Q Consensus 40 ~C~~C~~~~~------~~~~-l~~~~~~--v~~~~vd~~~~~------~~~~~~--~v~~~P~~~i~~~g~~~~~~~~~- 101 (119)
-|..|..+-. -|+. +.++||+ +.+..||+...+ .++++. .---+|-+++ +|.++.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 5777765432 2333 5678885 777889986433 233332 3346887666 7888875 55
Q ss_pred CHHHHHHHHH
Q 033426 102 KKEELQQTIA 111 (119)
Q Consensus 102 ~~~~l~~~l~ 111 (119)
....+.++++
T Consensus 84 ~LK~I~~~~e 93 (93)
T PF07315_consen 84 QLKDIYEEME 93 (93)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHhhC
Confidence 6666666653
No 330
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=60.83 E-value=34 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=24.0
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEe
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 67 (119)
..--+.+|-...|+.|......+.. ....+.++-|+
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEec
Confidence 3444556667999999988776622 22357777777
No 331
>PRK15113 glutathione S-transferase; Provisional
Probab=59.14 E-value=40 Score=21.63 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=35.2
Q ss_pred CeEEEEEeCC--CCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc----chhHHhhcCCCcccEEEE
Q 033426 30 QLVVVDFTAS--WCGPCRFIAPFLAELAKKLPNVLFLKVDVDE----LKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 30 ~~~vv~f~~~--~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~----~~~~~~~~~v~~~P~~~i 88 (119)
++.+..|+.+ .|+.|+++.-.+.+..-. ..+..+|..+ .+++.+......+|++..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 3455666654 699998877766655333 3445566532 245666667778999864
No 332
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.83 E-value=34 Score=19.83 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=36.9
Q ss_pred hCCCeEEEEEeCC---CCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCC-CcccEE-EEEeCCeEEE
Q 033426 27 ETKQLVVVDFTAS---WCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAV-EAMPTF-MFLKEGKIVD 96 (119)
Q Consensus 27 ~~~~~~vv~f~~~---~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v-~~~P~~-~i~~~g~~~~ 96 (119)
..++.++.+-.+| -|+++.++...+. ..+-+.|..+|.-.++++.+...- ..+||| -+|-+|..+.
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~----~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILS----ACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHH----HcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 5666665555565 5555554444333 332278888999888887665532 234442 1334774443
No 333
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=58.74 E-value=25 Score=18.22 Aligned_cols=64 Identities=6% Similarity=0.051 Sum_probs=36.8
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEe----CccchhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVD----VDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 111 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd----~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~ 111 (119)
.|++|++..=.++...-.+ .+.++ .+ ....+.+.+.-+...+|++.. .+|+++. +...|.++|+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC-EEEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHh
Confidence 4999999988887775554 23333 22 122345666667788999755 5776332 3344555544
No 334
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=57.79 E-value=37 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
++++|..|+++-. |. +.+++.+.++++..
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 4667788888765 66 78888888777654
No 335
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=25 Score=25.00 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=41.2
Q ss_pred eEEEEEeCccchhHHhhcCCCcccEEEEE--eCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 61 VLFLKVDVDELKSVATDWAVEAMPTFMFL--KEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 61 v~~~~vd~~~~~~~~~~~~v~~~P~~~i~--~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
.-.+..|..+...+..-|.+..+|.+.++ .-|+.+.+..|. .++++..-+.+.+..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 33445566677788888999999987777 368888888777 677777776666643
No 336
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=56.03 E-value=41 Score=21.38 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
++++|..||++-. |. +.+++...+++.+
T Consensus 49 t~lIF~SGKiviT--Gaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMVCT--GAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 5788899998875 55 6777776666554
No 337
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=55.76 E-value=43 Score=21.26 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=21.2
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.++.+|..|+++-. |. +.++++..+++++
T Consensus 48 ~t~lIF~sGKiviT--Gaks~~~~~~a~~~~~ 77 (174)
T cd04517 48 ATASVWSSGKITIT--GATSEEEAKQAARRAA 77 (174)
T ss_pred EEEEEECCCeEEEE--ccCCHHHHHHHHHHHH
Confidence 36788899998875 66 6777777766654
No 338
>PLN00062 TATA-box-binding protein; Provisional
Probab=55.67 E-value=40 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=21.2
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.++++|..||++-. |. +.+++...+++.+
T Consensus 48 ~t~lIF~SGKiviT--Gaks~e~a~~a~~~~~ 77 (179)
T PLN00062 48 TTALIFASGKMVCT--GAKSEHDSKLAARKYA 77 (179)
T ss_pred EEEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 37889999998875 66 6777776666554
No 339
>PRK00394 transcription factor; Reviewed
Probab=55.12 E-value=41 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=22.6
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
.++++|..||++-. |. +.+++...+++++.
T Consensus 47 ~t~lIf~sGKiv~t--Ga~S~~~a~~a~~~~~~ 77 (179)
T PRK00394 47 IAALIFRSGKVVCT--GAKSVEDLHEAVKIIIK 77 (179)
T ss_pred eEEEEEcCCcEEEE--ccCCHHHHHHHHHHHHH
Confidence 57889999998875 65 77777777776643
No 340
>PRK00394 transcription factor; Reviewed
Probab=54.99 E-value=43 Score=21.38 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
++++|..|+++-. |. +.+++.+.++.+++
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 4667778888765 66 77778777776654
No 341
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=54.88 E-value=43 Score=21.24 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 033426 84 PTFMFLKEGKIVDKVVGS-KKEELQQTIAKHL 114 (119)
Q Consensus 84 P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~ 114 (119)
.++++|..||++-. |. +.+++...+++.+
T Consensus 48 ~t~lIf~sGKivit--Gaks~~~~~~a~~~~~ 77 (174)
T cd00652 48 TTALIFSSGKMVIT--GAKSEEDAKLAARKYA 77 (174)
T ss_pred EEEEEECCCEEEEE--ecCCHHHHHHHHHHHH
Confidence 46889999998875 55 6777777666654
No 342
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=54.68 E-value=20 Score=18.39 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=18.0
Q ss_pred hhCCCeEEEEEeC-----------CCCHhHHhhhHHH
Q 033426 26 NETKQLVVVDFTA-----------SWCGPCRFIAPFL 51 (119)
Q Consensus 26 ~~~~~~~vv~f~~-----------~~C~~C~~~~~~~ 51 (119)
.-.|.+++..-.. |-|+.|++....+
T Consensus 21 av~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 21 AVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 3567777766554 5699999877654
No 343
>PLN00062 TATA-box-binding protein; Provisional
Probab=53.93 E-value=44 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 85 TFMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
++++|..|+++-. |. +.+++.+.++.+++
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIVIT--GAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 3566677877765 56 68888887776654
No 344
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=53.29 E-value=45 Score=19.60 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=52.8
Q ss_pred CCCeEEEEEe-CCCCHhHHhhhHHHHHHHHhC----C----C---eEEEEEeCccchhHHhhcCC-CcccEEEEEe---C
Q 033426 28 TKQLVVVDFT-ASWCGPCRFIAPFLAELAKKL----P----N---VLFLKVDVDELKSVATDWAV-EAMPTFMFLK---E 91 (119)
Q Consensus 28 ~~~~~vv~f~-~~~C~~C~~~~~~~~~l~~~~----~----~---v~~~~vd~~~~~~~~~~~~v-~~~P~~~i~~---~ 91 (119)
...+.+|+|- +..-+.-....+.++.+++++ + + +-|+..+.+....+..-.+. ...|.+++.. .
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 4556666666 555556777777777776543 1 1 33334444444444333344 3588877773 5
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHh
Q 033426 92 GKIVDKVVGSKKEELQQTIAKHL 114 (119)
Q Consensus 92 g~~~~~~~~~~~~~l~~~l~~~~ 114 (119)
++.+......+.+.+.+|+.+.+
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 66666655558999999998875
No 345
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=51.90 E-value=50 Score=20.97 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=20.6
Q ss_pred EEEEeCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 86 FMFLKEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 86 ~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
+++|..|+++-. |. +.+++.+.++.+++
T Consensus 141 ~liF~sGkvvit--Gaks~~~~~~a~~~i~p 169 (174)
T cd04516 141 LLIFVSGKIVLT--GAKSREEIYQAFENIYP 169 (174)
T ss_pred EEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 456678888765 56 78888888877664
No 346
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=51.64 E-value=38 Score=24.00 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=33.4
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
..++...+......+.-+|+ .+--.+...+++++.++|++.|+.+|.
T Consensus 83 ~~~~~~~~~~~a~~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 83 EADYERALRALAEDGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred hhHHHHHHHHHHhcCCCEEE-------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 56777777655445553333 233466788999999999999999987
No 347
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=51.47 E-value=74 Score=21.54 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=26.3
Q ss_pred hHHhhcCCCcc--cE-EEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 033426 73 SVATDWAVEAM--PT-FMFLKEGKIVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 73 ~~~~~~~v~~~--P~-~~i~~~g~~~~~~~~~-~~~~l~~~l~ 111 (119)
.+.+.+++... .. +++..+|++...-.|. ++++++...+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 45556666543 32 4444789999998888 8888876643
No 348
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=51.14 E-value=20 Score=27.27 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=39.2
Q ss_pred CCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 59 PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 59 ~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
+++.+..+-..++..+++ +++...|+.+++++|......... +.+...+.|.+++..
T Consensus 214 ~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 214 KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 345554444444445556 899999999999999877665555 666777777777643
No 349
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=50.96 E-value=58 Score=20.18 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=27.0
Q ss_pred hHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 17 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
.+++........++.+.+++-.+-|.+|+ ..+..++++..
T Consensus 87 aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~---~~i~~~a~~lG 126 (146)
T PF14437_consen 87 AIQQAYDAGKTVGRSMTMYVDRDVCGYCG---GDIPSMAEKLG 126 (146)
T ss_pred HHHHHHHhcCccCCeEEEEECcccchHHH---HHHHHHHHHcC
Confidence 34444443333367778888899999999 66777777763
No 350
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=50.45 E-value=35 Score=17.51 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i 88 (119)
++|++|+++.-.++.. ++.+-.++.+... .-....+|++..
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~ 54 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL 54 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE
Confidence 5999999988877663 4444434333211 123447998754
No 351
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.23 E-value=6.4 Score=25.34 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
..|+++--+|.+.|.+=.+..-.+..+-=+|..+.+..-....+.++.+-.....+|++++ +|..+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEe
Confidence 4577777777888877555544444443333333333221112234444445678999877 55433
No 352
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=46.91 E-value=1.1e+02 Score=22.11 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=57.5
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhC---CCeEEEEEeCccchhHHhhc----CCC-cccEEEEEe--CCeEEE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKL---PNVLFLKVDVDELKSVATDW----AVE-AMPTFMFLK--EGKIVD 96 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~---~~v~~~~vd~~~~~~~~~~~----~v~-~~P~~~i~~--~g~~~~ 96 (119)
.-+...+|-|-...-+.-..+...+.++++.. +++.++.||-++.|-+...| +|. .-|.+=+.. +-.-+.
T Consensus 266 d~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW 345 (383)
T PF01216_consen 266 DIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVW 345 (383)
T ss_dssp SSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEE
T ss_pred cCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccch
Confidence 34677788888889999999999999999886 46999999999988766554 443 358766553 333333
Q ss_pred EEeC-----CCHHHHHHHHHHHhh
Q 033426 97 KVVG-----SKKEELQQTIAKHLA 115 (119)
Q Consensus 97 ~~~~-----~~~~~l~~~l~~~~~ 115 (119)
.-.. ++.++++.||+..+.
T Consensus 346 ~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 346 MDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp C-STTTSS---HHHHHHHHHHHHC
T ss_pred hccCCcccCCcHHHHHHHHHHHhc
Confidence 2211 168999999999884
No 353
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=46.70 E-value=26 Score=18.75 Aligned_cols=66 Identities=8% Similarity=0.120 Sum_probs=35.0
Q ss_pred CCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHH---hhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHH
Q 033426 38 ASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVA---TDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 112 (119)
Q Consensus 38 ~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~---~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~ 112 (119)
.+||++|+++.-.+....-.| ....++........ .......+|+++. .+|..+. ....|.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 368999999887777654433 33344433222211 2234567898743 3254322 34445555554
No 354
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.54 E-value=69 Score=20.59 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=25.5
Q ss_pred EEEEEeCCCCHhHHhhhHHHHHHHHhCC-CeEEEEE
Q 033426 32 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKV 66 (119)
Q Consensus 32 ~vv~f~~~~C~~C~~~~~~~~~l~~~~~-~v~~~~v 66 (119)
.|=+|+..-||+|--....++++...++ .+.+..+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 3456778899999999999999887653 3444333
No 355
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=45.33 E-value=72 Score=22.49 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=31.1
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEEe
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVD 67 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd 67 (119)
.|||+++.|-...-+.++.+...+++.+.+.+ ++.++.+.
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 48999887777667888999999999988864 56666554
No 356
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=44.55 E-value=1.3e+02 Score=22.51 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=32.9
Q ss_pred hCCCeEEEEEeCC-CCHhHHhhhHHHHHHHHhCCC--eEEEEEe-CccchhHHhhcCCCccc
Q 033426 27 ETKQLVVVDFTAS-WCGPCRFIAPFLAELAKKLPN--VLFLKVD-VDELKSVATDWAVEAMP 84 (119)
Q Consensus 27 ~~~~~~vv~f~~~-~C~~C~~~~~~~~~l~~~~~~--v~~~~vd-~~~~~~~~~~~~v~~~P 84 (119)
.+...+||+|+.+ ....=......+.++..+++. +.++.+. ..-....+-+.++...|
T Consensus 279 ~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~ 340 (499)
T PF05679_consen 279 DNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFP 340 (499)
T ss_pred CceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCC
Confidence 4455677888774 333333466788888888874 5666665 22233334444555444
No 357
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=44.45 E-value=50 Score=17.57 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred EEEEeCCCCHhHHhhhHHHHHHHHhCCC--eEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEe---CC-CHHHH
Q 033426 33 VVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVV---GS-KKEEL 106 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~~~~~~l~~~~~~--v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~---~~-~~~~l 106 (119)
|..-|=..|++-.++...-+.+...+++ +.+.. .....-+|-++-+|+.+.... +. +.+++
T Consensus 3 V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~-------------~~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i 69 (76)
T PF10262_consen 3 VTIEYCTSCGYRPRALELAQELLQTFPDRIAEVEL-------------SPGSTGAFEVTVNGELIFSKLESGRFPDPDEI 69 (76)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEE-------------EEESTT-EEEEETTEEEEEHHHHTSSS-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEE-------------EeccCCEEEEEEccEEEEEehhcCCCCCHHHH
Confidence 3444545666666777777888889987 33322 112233577777888777332 33 78888
Q ss_pred HHHHHHH
Q 033426 107 QQTIAKH 113 (119)
Q Consensus 107 ~~~l~~~ 113 (119)
.+.|+++
T Consensus 70 ~~~I~~~ 76 (76)
T PF10262_consen 70 VQLIRDH 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 8887653
No 358
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=43.45 E-value=14 Score=23.23 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCeEEEEEeC---ccchhHHhhcCCCcccEEEEEeCC
Q 033426 49 PFLAELAKKLPNVLFLKVDV---DELKSVATDWAVEAMPTFMFLKEG 92 (119)
Q Consensus 49 ~~~~~l~~~~~~v~~~~vd~---~~~~~~~~~~~v~~~P~~~i~~~g 92 (119)
..+..+..++++.+|+.-.. +-.-.+...-+-..+|.++++++|
T Consensus 116 ~~vK~il~nfkd~qFf~Gesm~~dgmv~l~~yredg~tP~~~f~KdG 162 (165)
T PF00838_consen 116 EFVKKILANFKDYQFFTGESMDPDGMVALLNYREDGVTPYFIFFKDG 162 (165)
T ss_dssp HHHHHHHHTGGGCEEEEETTCCTTS-EEEEEEETTSSSEEEEEEGGG
T ss_pred HHHHHHHhhccccccccccccCCCCcEEEEEecCCCccEEEEEEccc
Confidence 44555666677888874322 111122222245578999998887
No 359
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=41.01 E-value=61 Score=20.02 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=23.8
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP 59 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~ 59 (119)
+.+.+++. +.+|-+|-..+ +...|+++...+.++..+..
T Consensus 53 ~~l~~~i~----~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 53 ERLKKFIE----KHKPDVIAVGG-NSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHH----HH--SEEEE---SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH----HcCCeEEEEcC-CChhHHHHHHHHHHHHHHhh
Confidence 34444553 34444554544 78999999999998877653
No 360
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=40.64 E-value=55 Score=16.93 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=30.2
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch-hHHhhcCCCcccEEEEEeCCeE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK-SVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
..+|.+-|+.|++..-.+....-.+ ....++.+... ++........+|++.. +|..
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i~~---e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 59 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGISW---EEERVTYEEWQESLKPKMLFGQLPCFKD--GDLT 59 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCCCC---EEEEecHHHhhhhhhccCCCCCCCEEEE--CCEE
Confidence 3456667888887777666654333 33344433221 2223334557899753 5543
No 361
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=40.52 E-value=35 Score=21.41 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=14.9
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEe
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFT 37 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~ 37 (119)
-..+.+.+++...+..+...+++.+|...
T Consensus 140 ~~~v~~~~el~~al~~a~~~~~p~liev~ 168 (177)
T cd02010 140 GYRIESADDLLPVLERALAADGVHVIDCP 168 (177)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34445555555555554445555555443
No 362
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=40.47 E-value=26 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.728 Sum_probs=17.5
Q ss_pred CCCeEEEEEeCC---CCHhHHhhhHH
Q 033426 28 TKQLVVVDFTAS---WCGPCRFIAPF 50 (119)
Q Consensus 28 ~~~~~vv~f~~~---~C~~C~~~~~~ 50 (119)
.....||.|--| ||.-|+.....
T Consensus 39 ~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 39 DQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred ccceEEEEEecccchhhccHHHhhhc
Confidence 466788889776 99999876553
No 363
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=40.25 E-value=70 Score=22.48 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=29.5
Q ss_pred CeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc
Q 033426 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 30 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
...||.+ .|+.|++....++.+...-+.+.++.||+..
T Consensus 77 ~~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 77 GSMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CCEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 3356655 7889999999999988655578899999865
No 364
>PLN02378 glutathione S-transferase DHAR1
Probab=39.79 E-value=83 Score=20.21 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=29.2
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i 88 (119)
.+|++|+++.=.++...-. ..+..+|... .+.+.+-.....+|++..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~~ 65 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLKI 65 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEEE
Confidence 3599999987777555433 3444555533 334555556678998743
No 365
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=39.72 E-value=1.5e+02 Score=21.69 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=53.8
Q ss_pred eehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhh-HHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcc----cEEE
Q 033426 13 HTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIA-PFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAM----PTFM 87 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~-~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~----P~~~ 87 (119)
+...++...| .++...++...+++|+.-..+. ..+.+++.++ ++..+ +|..+...+...+++... +-++
T Consensus 144 t~~~d~~~AI----ne~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~-~lpvi-vD~aSg~~v~~e~~l~~~la~GaDLV 217 (395)
T COG1921 144 THLKDYELAI----NENTALLLKVHSSNYGFTGMLSEEELVEIAHEK-GLPVI-VDLASGALVDKEPDLREALALGADLV 217 (395)
T ss_pred CCHHHHHHHh----ccCCeeEEEEeeccccccccccHHHHHHHHHHc-CCCEE-EecCCccccccccchhHHHhcCCCEE
Confidence 3455666677 6788889999999995543333 3478888887 44333 555443322233433332 3467
Q ss_pred EEeCCeEEE-EEeCC--CHHHHHHHHHHH
Q 033426 88 FLKEGKIVD-KVVGS--KKEELQQTIAKH 113 (119)
Q Consensus 88 i~~~g~~~~-~~~~~--~~~~l~~~l~~~ 113 (119)
+|..+|... -..|. ...++...++++
T Consensus 218 ~~SgdKllgGPqaGii~GkKelI~~lq~~ 246 (395)
T COG1921 218 SFSGDKLLGGPQAGIIVGKKELIEKLQSH 246 (395)
T ss_pred EEecchhcCCCccceEechHHHHHHHHhh
Confidence 887665444 12233 345555555543
No 366
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=39.53 E-value=29 Score=23.27 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=36.0
Q ss_pred HhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCC
Q 033426 22 LQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAV 80 (119)
Q Consensus 22 ~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v 80 (119)
+..+...+++++ -+.+.++.++.+....+++..+........++.++-..+...||+
T Consensus 214 v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 214 VQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 333335666664 347788888877777777776654444555566666666777765
No 367
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=39.44 E-value=71 Score=17.90 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=25.5
Q ss_pred hHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc--------CCCcccEEEE
Q 033426 43 PCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW--------AVEAMPTFMF 88 (119)
Q Consensus 43 ~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P~~~i 88 (119)
..+.-...+..+.+. .++.|-.+|.+.+++..+.+ +-..+|.+++
T Consensus 14 ~~k~~~~~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi 66 (92)
T cd03030 14 EIKKRQQEVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN 66 (92)
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 333333444444444 37888889987665443332 3356788654
No 368
>PRK11752 putative S-transferase; Provisional
Probab=38.39 E-value=1.2e+02 Score=20.33 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=34.7
Q ss_pred EeCCCCHhHHhhhHHHHHH-HHhCC--CeEEEEEeCcc----chhHHhhcCCCcccEEEE
Q 033426 36 FTASWCGPCRFIAPFLAEL-AKKLP--NVLFLKVDVDE----LKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l-~~~~~--~v~~~~vd~~~----~~~~~~~~~v~~~P~~~i 88 (119)
+|...++.|+++.=.++++ ....+ ...+..+|... .+++.+-.....+|+++.
T Consensus 47 Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 47 LYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred EecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 4445699999999888885 33333 34555666532 345666667778999865
No 369
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.26 E-value=1.4e+02 Score=21.96 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=30.7
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhh--HHHHHHHHhC--CCeEEEEEeC
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIA--PFLAELAKKL--PNVLFLKVDV 68 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~--~~~~~l~~~~--~~v~~~~vd~ 68 (119)
..+...+...........++..+ +|+.|+.-. ..+++..... +++.++.++.
T Consensus 57 G~lid~~~~g~~d~~n~~vlmt~-TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 57 GQLIDAIESGEYDIENDAVLMTQ-TGGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred HHHHHHHHhCCccccccEEEEec-CCCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 34555554443333344444455 999999543 4455554443 5799999984
No 370
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=38.21 E-value=71 Score=17.56 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=24.0
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhh
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~ 115 (119)
.++.+++++++ +-=..+|.+.....| +.+.+.+|++.+..
T Consensus 25 ~~A~~~gl~G~--V~N~~dg~V~i~~~G-~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 25 RIARKLGLTGW--VRNLPDGSVEIEAEG-EEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHTT-EEE--EEE-TTSEEEEEEEE-EHHHHHHHHHHHHH
T ss_pred HHHHHhCCceE--EEECCCCEEEEEEEe-CHHHHHHHHHHHHh
Confidence 56778888776 333367866666666 55556666655543
No 371
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=38.15 E-value=1.5e+02 Score=21.11 Aligned_cols=81 Identities=15% Similarity=0.177 Sum_probs=45.7
Q ss_pred hhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHH
Q 033426 26 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEE 105 (119)
Q Consensus 26 ~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~ 105 (119)
..++++..|+|.....|--.+ .+...+..+.-..|++..-+.. ......+..|.+.+|++...--.. ..+.+.
T Consensus 150 q~Rhq~ffVf~Gtge~PL~d~---fidAASe~~~~a~FfSaseeVa---Pe~~~~kempaV~VFKDetf~i~d-e~dd~d 222 (468)
T KOG4277|consen 150 QARHQPFFVFFGTGEGPLFDA---FIDAASEKFSVARFFSASEEVA---PEENDAKEMPAVAVFKDETFEIED-EGDDED 222 (468)
T ss_pred hhccCceEEEEeCCCCcHHHH---HHHHhhhheeeeeeeccccccC---CcccchhhccceEEEccceeEEEe-cCchhH
Confidence 478999999998665443221 1222223332244444332222 234466789999999876443333 335677
Q ss_pred HHHHHHHH
Q 033426 106 LQQTIAKH 113 (119)
Q Consensus 106 l~~~l~~~ 113 (119)
+.+||.+-
T Consensus 223 LseWinRE 230 (468)
T KOG4277|consen 223 LSEWINRE 230 (468)
T ss_pred HHHHHhHh
Confidence 88887653
No 372
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.08 E-value=1.4e+02 Score=20.72 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=56.3
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc--h---hHHhhcCCCcccEEEE
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL--K---SVATDWAVEAMPTFMF 88 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~--~---~~~~~~~v~~~P~~~i 88 (119)
+.++|...+.....+....-+.++.+.|..-+.-.....+|+.+. ++.++.-+..++ . ++++..+ .|++.+
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~I 240 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLI 240 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEE
Confidence 345666666543222210223456888988888888888888875 554443333221 1 2344433 567665
Q ss_pred E----------eCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 89 L----------KEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 89 ~----------~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
- ++.+.+....|. +++.+.+-+-+.+.
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 4 234567778888 67777666655553
No 373
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=37.88 E-value=1.2e+02 Score=20.07 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=28.6
Q ss_pred hhCCCeEEEEEe-----CCCCHhHHhhhHHHHHHHHhC--CCeEEEEEeC
Q 033426 26 NETKQLVVVDFT-----ASWCGPCRFIAPFLAELAKKL--PNVLFLKVDV 68 (119)
Q Consensus 26 ~~~~~~~vv~f~-----~~~C~~C~~~~~~~~~l~~~~--~~v~~~~vd~ 68 (119)
..+...+|-.|. ...|+.|-.+...+......+ .++.|+.|.-
T Consensus 65 ~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr 114 (211)
T PF05988_consen 65 EGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR 114 (211)
T ss_pred CCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence 345555555555 468999999999994443333 3688887764
No 374
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=37.78 E-value=42 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=16.5
Q ss_pred eeeeeehHhHH---HHHhhchhCCCeEEEEEeCC
Q 033426 9 VIGCHTVEAWN---EQLQKSNETKQLVVVDFTAS 39 (119)
Q Consensus 9 ~~~i~~~~~~~---~~~~~~~~~~~~~vv~f~~~ 39 (119)
-..+.+.++++ ..+..+...+++.+|...++
T Consensus 144 ~~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 144 RVVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred EEEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 34444445554 44454444566777766554
No 375
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=37.73 E-value=23 Score=21.57 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=9.1
Q ss_pred CCCHhHHhhhHHH
Q 033426 39 SWCGPCRFIAPFL 51 (119)
Q Consensus 39 ~~C~~C~~~~~~~ 51 (119)
+=|+.|+.+..+|
T Consensus 86 sPCG~CRQ~i~Ef 98 (134)
T COG0295 86 SPCGACRQVLAEF 98 (134)
T ss_pred CCcHHHHHHHHHh
Confidence 4688888776554
No 376
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=37.62 E-value=1.4e+02 Score=20.83 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=55.6
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccc--h---hHHhhcCCCcccEEEE
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDEL--K---SVATDWAVEAMPTFMF 88 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~--~---~~~~~~~v~~~P~~~i 88 (119)
+.+.|...+.....+..-+.+.++.+.|..-..-.....+|+.+. ++.++.-+..++ . ++++..+ .|++.+
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~kL~~i~~~~~---~~t~~I 242 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA-DLVIVVGSKNSSNSNRLREVAEEAG---APAYLI 242 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 345666666554333333333447889988888888888888875 554443333221 1 2344433 456555
Q ss_pred E----------eCCeEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 89 L----------KEGKIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 89 ~----------~~g~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
- ++-+.+....|. +++.+.+.+-..+.
T Consensus 243 e~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~ 280 (298)
T PRK01045 243 DDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLK 280 (298)
T ss_pred CChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 3 233567777788 67766665554443
No 377
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.97 E-value=1.3e+02 Score=20.12 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=31.6
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+.+++.+.+.....++ +-+|.. .-..+.+.+.+++++||++.|+.+|.
T Consensus 42 ~~~~~~~~i~~~~~~g-~dlIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 42 EGADAERVLRELAAQG-YDLIFG------TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred chHhHHHHHHHHHHcC-CCEEEE------CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 3455666666543344 333333 44567788899999999999988875
No 378
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=36.56 E-value=68 Score=16.81 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=37.7
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEEEeC--CeEEEEEeCCCHHHHHHH
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMFLKE--GKIVDKVVGSKKEELQQT 109 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i~~~--g~~~~~~~~~~~~~l~~~ 109 (119)
+|...++.|+++.-.++...-.+ ....++.. ..+..........+|++.. .+ |..+. ....|..+
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l~-----eS~aI~~y 74 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLPY---EIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTVF-----ESGAILLY 74 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCCc---EEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEEE-----cHHHHHHH
Confidence 34333599998888777664443 33344432 2344555556778999754 33 43221 23445556
Q ss_pred HHHH
Q 033426 110 IAKH 113 (119)
Q Consensus 110 l~~~ 113 (119)
|.+.
T Consensus 75 L~~~ 78 (81)
T cd03048 75 LAEK 78 (81)
T ss_pred HHHH
Confidence 5554
No 379
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=35.81 E-value=54 Score=20.93 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=17.6
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeC
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTA 38 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~ 38 (119)
.+.+.+++.+.+..+...+.+.+|.+..
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 3555666666666655566677776664
No 380
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=35.64 E-value=53 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=10.5
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEe
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFT 37 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~ 37 (119)
+++.+++.+.+..+...+++++|.+.
T Consensus 147 v~~~~el~~al~~a~~~~~p~liev~ 172 (186)
T cd02015 147 VEKPEELEAALKEALASDGPVLLDVL 172 (186)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33344444444433333444444433
No 381
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=35.62 E-value=1.5e+02 Score=20.59 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=38.2
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhc----CCCcccEEEEEeC
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDW----AVEAMPTFMFLKE 91 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~----~v~~~P~~~i~~~ 91 (119)
.++..-+-.++.|--..--.....++++.++-..+.-+.+|.=++.++.+.. .-.++|.++++..
T Consensus 115 ~~g~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 115 YKGVTRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred ccCCceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 4666666666666222222344455555555556666678876666555444 4567888777754
No 382
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=35.13 E-value=59 Score=22.39 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=25.9
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEeCCCCH
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFTASWCG 42 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~ 42 (119)
+.+.+++.+.+..+...+.+.+|...+|+-.
T Consensus 166 ~~~~~~l~~~i~~Al~~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 166 SGDIEETKEILKEAIKHKGLAIVDIFQPCVS 196 (280)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 5577899999998888899999999998443
No 383
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=34.94 E-value=12 Score=19.49 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=21.7
Q ss_pred CHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCc
Q 033426 41 CGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEA 82 (119)
Q Consensus 41 C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~ 82 (119)
||.|.. .++..++.++.+ .+|-+. .+++++.|++.
T Consensus 21 CP~Cgs-----~~~te~W~G~~i-Iidpe~-SeIAkrlgi~~ 55 (64)
T COG2093 21 CPVCGS-----TDLTEEWFGLLI-IIDPEK-SEIAKRLGIKI 55 (64)
T ss_pred CCCCCC-----cccchhhccEEE-EEcCcH-HHHHHHhCCCC
Confidence 666653 345666656533 366655 47899999853
No 384
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=34.34 E-value=58 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=30.7
Q ss_pred hhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 033426 76 TDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 113 (119)
Q Consensus 76 ~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~ 113 (119)
-+||.+++=||++-.+|.+..+--|.+.+.+.+.|+..
T Consensus 225 a~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~F 262 (271)
T PF11453_consen 225 AEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITSF 262 (271)
T ss_pred hhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhcc
Confidence 47788999999999999999988888777776666543
No 385
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=34.15 E-value=82 Score=17.29 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.0
Q ss_pred EEEEEeCCeEEEEEeCCCHHHHHHHH
Q 033426 85 TFMFLKEGKIVDKVVGSKKEELQQTI 110 (119)
Q Consensus 85 ~~~i~~~g~~~~~~~~~~~~~l~~~l 110 (119)
++.+|.-|+++.. |.+++......
T Consensus 41 tIt~Y~SGKV~FQ--G~~Ae~~A~~~ 64 (81)
T PF11858_consen 41 TITAYKSGKVVFQ--GKNAEQEAAKW 64 (81)
T ss_dssp EEEEETTSEEEEE--STTHHHHHHTT
T ss_pred EEEEEeCCeEEEE--CCCHHHHHHHh
Confidence 4667788888876 77776666554
No 386
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=33.83 E-value=85 Score=17.17 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhhhh
Q 033426 49 PFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATA 117 (119)
Q Consensus 49 ~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~~~ 117 (119)
..++.|. +.|++.+...++-..= |......|.+ -||+.+. +.+++++.+.|.+.+++.
T Consensus 18 ~~~~~Le-~~p~~~Vie~gCl~~C------g~C~~~pFAl-VnG~~V~---A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 18 QVYEKLE-KDPDIDVIEYGCLSYC------GPCAKKPFAL-VNGEIVA---AETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHh-cCCCccEEEcChhhhC------cCCCCCccEE-ECCEEEe---cCCHHHHHHHHHHHHhcc
Confidence 3455554 4578877766665432 3333333333 3685554 679999999999888764
No 387
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.32 E-value=1.3e+02 Score=22.07 Aligned_cols=39 Identities=23% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCeEEEEEeCCCCHhHHhhh-HHHHHHHHhCCCeEEEEEeCc
Q 033426 29 KQLVVVDFTASWCGPCRFIA-PFLAELAKKLPNVLFLKVDVD 69 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~-~~~~~l~~~~~~v~~~~vd~~ 69 (119)
.+..+|++-+|..|.++... +.+.+++.++ ++.+ .||-+
T Consensus 161 ~~t~~V~~ESPsNPll~v~DI~~l~~la~~~-g~~v-vVDnT 200 (409)
T KOG0053|consen 161 ENTKAVFLESPSNPLLKVPDIEKLARLAHKY-GFLV-VVDNT 200 (409)
T ss_pred cCceEEEEECCCCCccccccHHHHHHHHhhC-CCEE-EEeCC
Confidence 37889999999999998654 7888888865 4433 35543
No 388
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=33.15 E-value=1.5e+02 Score=19.79 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=40.1
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHh
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 114 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~ 114 (119)
..|++|+++.-.+....- ...+..+|... .+.+.+......+|+++. +|..+. ....|.++|++..
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~-----ES~aI~eYL~e~~ 83 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKT-----DVNKIEEFLEETL 83 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEee-----cHHHHHHHHHHHc
Confidence 579999998877765211 35556677654 355666667778999754 554332 3444555555443
No 389
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=32.92 E-value=1.2e+02 Score=20.48 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc-chhHHhhcCCCcccEEEE
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVDVDE-LKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~-~~~~~~~~~v~~~P~~~i 88 (119)
+|++|+++.-.+++..-. ..+..+|... .+.+.+......+|++..
T Consensus 72 ~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 599999988877665443 3444556543 333444555668999764
No 390
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=32.77 E-value=1e+02 Score=17.68 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=16.2
Q ss_pred EEEEeCCCCHhHHhhh-HHHHH
Q 033426 33 VVDFTASWCGPCRFIA-PFLAE 53 (119)
Q Consensus 33 vv~f~~~~C~~C~~~~-~~~~~ 53 (119)
|-.||-+-||.|+++. ..+..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 5578899999999874 55665
No 391
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=32.71 E-value=73 Score=16.05 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=26.3
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEE
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i 88 (119)
|+.+.|+.|.+..-.++...- ......++.. ..+.+.+......+|++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 445556666665444444322 2334445542 2344555566778998753
No 392
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=31.96 E-value=81 Score=16.36 Aligned_cols=29 Identities=10% Similarity=0.215 Sum_probs=18.8
Q ss_pred CcccEEEEEeCCeEEEEEeCCCHHHHHHHHHH
Q 033426 81 EAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 112 (119)
Q Consensus 81 ~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~ 112 (119)
..-|.++++.+|. .+...+++.+.+.|++
T Consensus 48 ~~~P~v~i~~~~~---~y~~v~~~~~~~il~~ 76 (77)
T cd02980 48 GLAPVVVVYPDGV---WYGRVTPEDVEEIVEE 76 (77)
T ss_pred cCCCEEEEeCCCe---EEccCCHHHHHHHHHh
Confidence 3578888886552 2323378888877765
No 393
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=31.83 E-value=46 Score=17.25 Aligned_cols=15 Identities=33% Similarity=0.824 Sum_probs=11.8
Q ss_pred cccEEEEEeCCeEEE
Q 033426 82 AMPTFMFLKEGKIVD 96 (119)
Q Consensus 82 ~~P~~~i~~~g~~~~ 96 (119)
-.|++.+++||+.+.
T Consensus 11 P~P~v~W~kdg~~l~ 25 (67)
T cd05863 11 PPPEFQWYKDGKLIS 25 (67)
T ss_pred CCCEEEEEECCEECc
Confidence 356888999998775
No 394
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=1.2e+02 Score=19.74 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=27.4
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCC--CeEEEEE
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKV 66 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~--~v~~~~v 66 (119)
.+++.++...--+.|--|+.....+.++..-.. ++.++.+
T Consensus 49 ~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~v 90 (197)
T KOG4498|consen 49 KERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAV 90 (197)
T ss_pred hcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 456666666778999999999988877743332 4444433
No 395
>PLN02473 glutathione S-transferase
Probab=31.40 E-value=1.4e+02 Score=18.93 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=34.3
Q ss_pred EEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----cchhHHhhcCCCcccEEEEEeCCeEE
Q 033426 34 VDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD----ELKSVATDWAVEAMPTFMFLKEGKIV 95 (119)
Q Consensus 34 v~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~~~~~~~~~~v~~~P~~~i~~~g~~~ 95 (119)
-.++.+.|+.|+++.-.+.++.-. ..+..+|.. ..++.........+|+++ .+|..+
T Consensus 4 kLy~~~~s~~~~rv~~~L~e~gi~---ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~g~~l 64 (214)
T PLN02473 4 KVYGQIKAANPQRVLLCFLEKGIE---FEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE--DGDLKL 64 (214)
T ss_pred EEecCCCCCchHHHHHHHHHcCCC---ceEEEecCcccccCCHHHHhhCCCCCCCeEE--ECCEEE
Confidence 344566788888887666654332 344556654 234455556778899975 356444
No 396
>PRK13669 hypothetical protein; Provisional
Probab=31.29 E-value=97 Score=17.01 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHhCCCeEEEEEeCccchhHHhhcCCCc-ccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 51 LAELAKKLPNVLFLKVDVDELKSVATDWAVEA-MPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 51 ~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
++.+ +++|++.+...++-+.= |... -|. .+-||+.+. +.+++++.+.|.+.++.
T Consensus 20 ~~~L-e~dP~~dVie~gCls~C------G~C~~~~F--AlVng~~V~---a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGYC------GICSEGLF--ALVNGEVVE---GETPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCCceEEEcchhhhC------cCcccCce--EEECCeEee---cCCHHHHHHHHHHHHhh
Confidence 4444 67888888877765432 2222 232 234785554 67999999999988875
No 397
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=31.23 E-value=1.2e+02 Score=18.08 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=33.3
Q ss_pred CCCHhHHhhhHHHHHHHHh----CC----CeEEEEEeCccchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 39 SWCGPCRFIAPFLAELAKK----LP----NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~----~~----~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
..|..|..-...+.+..++ +. .+.+-.+..++. +++..+ -+.|++.+ ||+.+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehh
Confidence 3899999877777666554 32 366666666653 455555 56777554 666553
No 398
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.21 E-value=1e+02 Score=23.12 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=17.0
Q ss_pred hHHHHHHHHhCCCeEEEEEeCcc
Q 033426 48 APFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 48 ~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
....+++.+.+|+..+..+|.+.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEeccc
Confidence 34456677788988889888764
No 399
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=30.96 E-value=33 Score=19.56 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=19.8
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhC
Q 033426 36 FTASWCGPCRFIAPFLAELAKKL 58 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~ 58 (119)
||-+|..+.++..+.+++++++.
T Consensus 32 ~ylswakpykrahesieklsnks 54 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNKS 54 (126)
T ss_pred eeeeecChhhHHHhHHHHhcccC
Confidence 45689999999999999998874
No 400
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=30.85 E-value=1.9e+02 Score=20.23 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=59.0
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc--ch---hHHhhcCCCcccEEEE
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE--LK---SVATDWAVEAMPTFMF 88 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~--~~---~~~~~~~v~~~P~~~i 88 (119)
+.+++.+.+.....+-.-.-.-+..+-|..-+.-...+.+++.+. ++.++.=+..+ .. +++++.+. |++++
T Consensus 169 s~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~-Dl~iVVG~~nSSNs~rL~eiA~~~g~---~aylI 244 (294)
T COG0761 169 SVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEV-DLVIVVGSKNSSNSNRLAEIAKRHGK---PAYLI 244 (294)
T ss_pred CHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcC-CEEEEECCCCCccHHHHHHHHHHhCC---CeEEe
Confidence 456677776655444443455666778888888888888888874 54444333322 22 34555444 88777
Q ss_pred Ee---------CC-eEEEEEeCC-CHHHHHHHHHHHhh
Q 033426 89 LK---------EG-KIVDKVVGS-KKEELQQTIAKHLA 115 (119)
Q Consensus 89 ~~---------~g-~~~~~~~~~-~~~~l~~~l~~~~~ 115 (119)
-. +| +.+....|. +++.+.+-+.+.+.
T Consensus 245 d~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l~ 282 (294)
T COG0761 245 DDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKLR 282 (294)
T ss_pred CChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHHH
Confidence 52 24 667777788 67766665555443
No 401
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.70 E-value=12 Score=25.65 Aligned_cols=7 Identities=29% Similarity=1.065 Sum_probs=4.3
Q ss_pred CCCHhHH
Q 033426 39 SWCGPCR 45 (119)
Q Consensus 39 ~~C~~C~ 45 (119)
.|||.||
T Consensus 266 ~~CP~CQ 272 (273)
T COG0266 266 FYCPVCQ 272 (273)
T ss_pred EeCCCCC
Confidence 3666665
No 402
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=30.42 E-value=62 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=12.3
Q ss_pred CCCCHhHHhhhHHHHH
Q 033426 38 ASWCGPCRFIAPFLAE 53 (119)
Q Consensus 38 ~~~C~~C~~~~~~~~~ 53 (119)
.+.|+.|.+-...+.+
T Consensus 31 ~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccChHHHHHHHHHHH
Confidence 5799999988766644
No 403
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=30.42 E-value=1.4e+02 Score=18.59 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCC--eEEEEEeC
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN--VLFLKVDV 68 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~--v~~~~vd~ 68 (119)
+++.+.+.++++.++.|.-+...++.+++.+.+ +.+-.++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 466778888899989999999999999999864 44444443
No 404
>PRK12411 cytidine deaminase; Provisional
Probab=30.41 E-value=34 Score=20.68 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=10.1
Q ss_pred CCCHhHHhhhHHH
Q 033426 39 SWCGPCRFIAPFL 51 (119)
Q Consensus 39 ~~C~~C~~~~~~~ 51 (119)
+=|+.|+.+..+|
T Consensus 84 sPCG~CRQ~l~Ef 96 (132)
T PRK12411 84 PPCGACRQVMVEL 96 (132)
T ss_pred CCchhHHHHHHHh
Confidence 5799999986655
No 405
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=30.26 E-value=41 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.4
Q ss_pred ccEEEEEeCCeEEE
Q 033426 83 MPTFMFLKEGKIVD 96 (119)
Q Consensus 83 ~P~~~i~~~g~~~~ 96 (119)
.|++.+|+||+.+.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 46899999998774
No 406
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=29.70 E-value=66 Score=20.08 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.0
Q ss_pred CeEEEEEe
Q 033426 60 NVLFLKVD 67 (119)
Q Consensus 60 ~v~~~~vd 67 (119)
+..++.+.
T Consensus 164 ~p~liev~ 171 (178)
T cd02014 164 GPVVIDVV 171 (178)
T ss_pred CCEEEEEE
Confidence 33344333
No 407
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=99 Score=19.67 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=33.0
Q ss_pred EEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc---cchhHHhhcCCCcccEEEE
Q 033426 35 DFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD---ELKSVATDWAVEAMPTFMF 88 (119)
Q Consensus 35 ~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~---~~~~~~~~~~v~~~P~~~i 88 (119)
.++.+.++.|.++.=.+.++.-. ..+..++.. ..+++........+|+++.
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g~~---ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~ 56 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKGLP---YEIVLVDLDAEQKPPDFLALNPLGKVPALVD 56 (211)
T ss_pred eecCCCCcchHHHHHHHHHcCCC---ceEEEeCcccccCCHHHHhcCCCCCCCEEee
Confidence 45666778898887766665422 344445544 3455667777889999754
No 408
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=29.53 E-value=2.2e+02 Score=20.59 Aligned_cols=53 Identities=21% Similarity=0.119 Sum_probs=35.4
Q ss_pred eeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhh-hHHHHHHHHhCCCeEEEEEeCcc
Q 033426 12 CHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFI-APFLAELAKKLPNVLFLKVDVDE 70 (119)
Q Consensus 12 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~-~~~~~~l~~~~~~v~~~~vd~~~ 70 (119)
..+.+++.+.+ +.+.-+|++-+|..|..+-. .+.+.+++++++++.+ .||-+-
T Consensus 127 ~~d~~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~-vVDnT~ 180 (386)
T PF01053_consen 127 PTDLEALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILV-VVDNTF 180 (386)
T ss_dssp TTSHHHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EE-EEECTT
T ss_pred chhHHHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceE-Eeeccc
Confidence 34556666666 45888999999999886643 3778888888753544 477654
No 409
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=29.51 E-value=1e+02 Score=16.95 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=17.3
Q ss_pred hHHhhcCCCcccEEEEEeCCeEEE
Q 033426 73 SVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 73 ~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
..+..|++...+++++..+|..+.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 456677886556788888998774
No 410
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=1.8e+02 Score=19.52 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCC----CcccEEEEEeCCeE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAV----EAMPTFMFLKEGKI 94 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v----~~~P~~~i~~~g~~ 94 (119)
|-|+..+.+...++.+ ++.|...|+-++.++.+.... ..+|.+. -+|..
T Consensus 152 P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQly--I~GEF 204 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLY--VKGEF 204 (227)
T ss_pred ccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCcccee--ECCEe
Confidence 5666666665555443 455777888777766554422 2455543 46633
No 411
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=29.31 E-value=69 Score=21.02 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=15.5
Q ss_pred ehHhHHHHHhhchhCCCeEEEEEeC
Q 033426 14 TVEAWNEQLQKSNETKQLVVVDFTA 38 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~vv~f~~ 38 (119)
+..+|+.++ ..++|++.-|.+
T Consensus 88 sd~~Fd~lF----T~DkPViFafHG 108 (203)
T PF09363_consen 88 SDEEFDALF----TKDKPVIFAFHG 108 (203)
T ss_dssp -HHHHHHHH-----SSS-EEEEESS
T ss_pred CHHHHHHhc----CCCCCEEEEcCC
Confidence 467999999 689999998875
No 412
>PRK05578 cytidine deaminase; Validated
Probab=29.30 E-value=37 Score=20.46 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=16.0
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+=|+.|+.+..++.. +++.++..+.
T Consensus 84 sPCG~CRQ~l~e~~~-----~~~~v~l~~~ 108 (131)
T PRK05578 84 SPCGRCRQVLAEFGG-----PDLLVTLVAK 108 (131)
T ss_pred CccHHHHHHHHHhCC-----CCcEEEEEcC
Confidence 579999988766631 3565554443
No 413
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=29.04 E-value=32 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.646 Sum_probs=17.4
Q ss_pred CCCeEEEEEeCC---CCHhHHhhhH
Q 033426 28 TKQLVVVDFTAS---WCGPCRFIAP 49 (119)
Q Consensus 28 ~~~~~vv~f~~~---~C~~C~~~~~ 49 (119)
.++..+|-|..| ||..|.....
T Consensus 27 k~~~~~VRf~~Pf~i~C~~C~~~I~ 51 (324)
T PF04502_consen 27 KQGILTVRFMMPFNIWCNTCGEYIY 51 (324)
T ss_pred cCcceEEEEcCCccCcCCCCccccc
Confidence 478889999877 9999987743
No 414
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.73 E-value=1.2e+02 Score=17.22 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=27.9
Q ss_pred HhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEE
Q 033426 16 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKV 66 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~v 66 (119)
+++.+.+ .+.++-+|-++..+...........+.+.+..+++.++.-
T Consensus 41 ~~l~~~~----~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 41 EELVEAL----RAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp HHHHHHH----HHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHH----hcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4444444 2345555666666666666666666666666677655533
No 415
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=28.60 E-value=1.2e+02 Score=21.64 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=41.2
Q ss_pred hCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeC
Q 033426 27 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKE 91 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~ 91 (119)
....+++|.-+. ..+.......+++..+.+.+.|+..|..+...+.+-|....+=.++.|..
T Consensus 25 ~gy~v~~vDNl~---n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~ 86 (343)
T KOG1371|consen 25 RGYGVVIVDNLN---NSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAA 86 (343)
T ss_pred CCCcEEEEeccc---ccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehh
Confidence 344555554433 33333444445555555579999999999999999998888777887743
No 416
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=1.3e+02 Score=18.51 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=21.9
Q ss_pred ccEEEEE-eCCeE-EEEEeCCCHHHHHHHHHHHhhhh
Q 033426 83 MPTFMFL-KEGKI-VDKVVGSKKEELQQTIAKHLATA 117 (119)
Q Consensus 83 ~P~~~i~-~~g~~-~~~~~~~~~~~l~~~l~~~~~~~ 117 (119)
.|.+-.| .+|+. +....|-+.++|++.|.+.+.+.
T Consensus 74 sPF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lGKt 110 (169)
T KOG4079|consen 74 SPFARAYLDDGREVLFDLDGMKREEIEKHLAKTLGKT 110 (169)
T ss_pred ChHHHheecCcceEEEEcccccHHHHHHHHHHHhCcc
Confidence 3433334 56654 44555558888998888877543
No 417
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.02 E-value=1e+02 Score=15.91 Aligned_cols=51 Identities=8% Similarity=-0.050 Sum_probs=28.1
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCcc---chhHHhhcCCCcccEEEEEeCCeE
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVDE---LKSVATDWAVEAMPTFMFLKEGKI 94 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~---~~~~~~~~~v~~~P~~~i~~~g~~ 94 (119)
..|+.|+++.-.++...-.| ....++... .+.+.+......+|++.. +|..
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~---e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~ 61 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPF---EEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIV 61 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCC---EEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEE
Confidence 45666776666555543333 333444432 244555556778999753 5543
No 418
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=26.47 E-value=25 Score=21.64 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.5
Q ss_pred CCCHhHHhhhHHHH
Q 033426 39 SWCGPCRFIAPFLA 52 (119)
Q Consensus 39 ~~C~~C~~~~~~~~ 52 (119)
--|++|+...|.+.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 37999999988774
No 419
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=26.36 E-value=1.1e+02 Score=21.02 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=28.2
Q ss_pred hHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc
Q 033426 15 VEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD 69 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 69 (119)
..++...+......+--+|+ ..+ -.+...+.+++++||++.|+.+|..
T Consensus 47 ~~~~~~~~~~~~~~g~dlIi-~~g------~~~~~~~~~vA~~yPd~~F~~~d~~ 94 (306)
T PF02608_consen 47 DADYEEAIRQLADQGYDLII-GHG------FEYSDALQEVAKEYPDTKFIIIDGY 94 (306)
T ss_dssp CHHHHHHHHHHHHTT-SEEE-EES------GGGHHHHHHHHTC-TTSEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCEEE-Ecc------HHHHHHHHHHHHHCCCCEEEEEecC
Confidence 34556665554334433333 332 2344677899999999999999864
No 420
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=26.32 E-value=91 Score=19.88 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=13.6
Q ss_pred eeeeehHhHHHHHhhchh---CCCeEEEEEe
Q 033426 10 IGCHTVEAWNEQLQKSNE---TKQLVVVDFT 37 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~---~~~~~vv~f~ 37 (119)
..+.+.+++...+..+.. .+++++|...
T Consensus 147 ~~v~~~~el~~al~~a~~~~~~~~p~liev~ 177 (196)
T cd02013 147 ITVDKPEDVGPALQKAIAMMAEGKTTVIEIV 177 (196)
T ss_pred EEECCHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 344445555555544433 4555555444
No 421
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=26.09 E-value=24 Score=21.62 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.1
Q ss_pred CCHhHHhhhHHHH
Q 033426 40 WCGPCRFIAPFLA 52 (119)
Q Consensus 40 ~C~~C~~~~~~~~ 52 (119)
-|++|+...|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 7999999988774
No 422
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=26.02 E-value=86 Score=17.99 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=37.3
Q ss_pred EeCCCCHhHHhhhH-------HHHHHHHhCCCeEEEEEeCccchhHHhhcCCCc-ccEEEEEeCCeEEEEEeCCCHHHHH
Q 033426 36 FTASWCGPCRFIAP-------FLAELAKKLPNVLFLKVDVDELKSVATDWAVEA-MPTFMFLKEGKIVDKVVGSKKEELQ 107 (119)
Q Consensus 36 f~~~~C~~C~~~~~-------~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~P~~~i~~~g~~~~~~~~~~~~~l~ 107 (119)
|....|+.|..+.. ...-....|.++..+ +|-++ .-+++..++.. .|- ...-...|.-++++.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~~-SwVAk~l~i~~~~pG-------~YAi~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPEK-SWVARWQRIDKFVPG-------IYAISVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCch-hHHHHHhCCCCCCCC-------eEEEEecCcCCHHHH
Confidence 77789999963321 122234555555333 44443 46778888862 443 333334456566666
Q ss_pred HHHHH
Q 033426 108 QTIAK 112 (119)
Q Consensus 108 ~~l~~ 112 (119)
..++.
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 65543
No 423
>PRK06848 hypothetical protein; Validated
Probab=26.02 E-value=44 Score=20.37 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=9.8
Q ss_pred CCCHhHHhhhHHH
Q 033426 39 SWCGPCRFIAPFL 51 (119)
Q Consensus 39 ~~C~~C~~~~~~~ 51 (119)
+=|+.|+.+..+|
T Consensus 95 ~PCG~CRQvl~E~ 107 (139)
T PRK06848 95 SPCGACRELISDY 107 (139)
T ss_pred CCChhhHHHHHHh
Confidence 4699999886654
No 424
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=25.87 E-value=1.8e+02 Score=18.38 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=24.7
Q ss_pred hcCCCcccE--EEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 033426 77 DWAVEAMPT--FMFLKEGKIVDKVVGS-KKEELQQTIA 111 (119)
Q Consensus 77 ~~~v~~~P~--~~i~~~g~~~~~~~~~-~~~~l~~~l~ 111 (119)
.|+++.--. +++.++|++.....|. +..++...|.
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 677766554 3344799999999999 7766666554
No 425
>PHA02131 hypothetical protein
Probab=25.67 E-value=1.1e+02 Score=15.65 Aligned_cols=26 Identities=8% Similarity=0.344 Sum_probs=17.7
Q ss_pred CcccEEEEEeCCeEEEEEeCCCHHHH
Q 033426 81 EAMPTFMFLKEGKIVDKVVGSKKEEL 106 (119)
Q Consensus 81 ~~~P~~~i~~~g~~~~~~~~~~~~~l 106 (119)
.++.+++.|++|++..-....+..++
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dtaqf 52 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTAQF 52 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHHHH
Confidence 35778899999998885544443333
No 426
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=25.64 E-value=86 Score=19.27 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=14.6
Q ss_pred eeeeehHhHHHHHhhchhCCCeEEEEE
Q 033426 10 IGCHTVEAWNEQLQKSNETKQLVVVDF 36 (119)
Q Consensus 10 ~~i~~~~~~~~~~~~~~~~~~~~vv~f 36 (119)
..+.+.+++...+..+...+++.+|..
T Consensus 126 ~~v~~~~el~~al~~a~~~~gp~vi~v 152 (157)
T cd02001 126 LSAPLLGGLGSEFAGLLATTGPTLLHA 152 (157)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 445555666666655444555555543
No 427
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=25.50 E-value=55 Score=19.17 Aligned_cols=19 Identities=21% Similarity=0.712 Sum_probs=16.6
Q ss_pred CCCHhHHhhhHHHHHHHHh
Q 033426 39 SWCGPCRFIAPFLAELAKK 57 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~ 57 (119)
.-|+.|+.+...+.++.+.
T Consensus 84 RvC~DCH~~~K~iS~~~~R 102 (116)
T PF14432_consen 84 RVCGDCHSFIKFISKITGR 102 (116)
T ss_pred ccchHHHHHHHHHHHHHCe
Confidence 7899999999999888765
No 428
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=25.32 E-value=87 Score=17.15 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=13.6
Q ss_pred CCCHhHHhhhHHHHHHHHh
Q 033426 39 SWCGPCRFIAPFLAELAKK 57 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~ 57 (119)
..|+.|+........+...
T Consensus 37 ~~C~~C~~e~~~~~~~~~~ 55 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKL 55 (84)
T ss_pred HhCHHHHHHHHHHHHHHHH
Confidence 3899999888766555443
No 429
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=40 Score=21.82 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=26.8
Q ss_pred CCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEEeCCe
Q 033426 38 ASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGK 93 (119)
Q Consensus 38 ~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~~~g~ 93 (119)
-+.||+|.+++=.+- +.+- .+....++-|+...-.+.-|-+.+|-+ .-.+|.
T Consensus 6 YdHCPfcvrarmi~G-l~ni--pve~~vL~nDDe~Tp~rmiG~KqVPiL-~Kedg~ 57 (215)
T COG2999 6 YDHCPFCVRARMIFG-LKNI--PVELHVLLNDDEETPIRMIGQKQVPIL-QKEDGR 57 (215)
T ss_pred eccChHHHHHHHHhh-ccCC--ChhhheeccCcccChhhhhcccccceE-Eccccc
Confidence 468999998764332 1111 233333344433333455677788864 223453
No 430
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=25.12 E-value=92 Score=21.69 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.3
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhH
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPC 44 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C 44 (119)
.+.+.+++...+..+...+.+.+|.+..+ |+..
T Consensus 175 ~v~~~~eL~~ai~~A~~~~GpalIeV~~~-C~~~ 207 (301)
T PRK05778 175 FAGDVKQLVELIKKAISHKGFAFIDVLSP-CVTF 207 (301)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCC-CCCC
Confidence 46778899999988878899999999876 4444
No 431
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.04 E-value=78 Score=13.87 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.7
Q ss_pred eCCCHHHHHHHHHH
Q 033426 99 VGSKKEELQQTIAK 112 (119)
Q Consensus 99 ~~~~~~~l~~~l~~ 112 (119)
.|.+.+++++|++.
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 35678888888764
No 432
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=25.02 E-value=1.2e+02 Score=20.10 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=21.2
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCC
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTAS 39 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~ 39 (119)
.+.+.+++.+.+..+...+.+.+|.+..+
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 46677777777777666677888887765
No 433
>PHA02151 hypothetical protein
Probab=24.82 E-value=52 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=11.3
Q ss_pred CCCeEEEEEeCCCCH
Q 033426 28 TKQLVVVDFTASWCG 42 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~ 42 (119)
++.--.|+||..||.
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 344557899999995
No 434
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=24.63 E-value=1.7e+02 Score=17.54 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=9.5
Q ss_pred CCCeEEEEEeCCCCHh
Q 033426 28 TKQLVVVDFTASWCGP 43 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~ 43 (119)
..+.++|.+.+.+..+
T Consensus 50 ~~d~vvi~lGtNd~~~ 65 (150)
T cd01840 50 LRKTVVIGLGTNGPFT 65 (150)
T ss_pred CCCeEEEEecCCCCCC
Confidence 4566666666666543
No 435
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=24.59 E-value=66 Score=14.29 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=13.2
Q ss_pred CCHhHHhhhHHHHHHHH
Q 033426 40 WCGPCRFIAPFLAELAK 56 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~ 56 (119)
.|..|+.+...++.+..
T Consensus 3 ~C~~C~~~v~~i~~~l~ 19 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLK 19 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 47888888888877664
No 436
>PRK08298 cytidine deaminase; Validated
Probab=24.58 E-value=49 Score=20.12 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.3
Q ss_pred CCCHhHHhhhHHH
Q 033426 39 SWCGPCRFIAPFL 51 (119)
Q Consensus 39 ~~C~~C~~~~~~~ 51 (119)
+=|+.|+.+..+|
T Consensus 87 sPCG~CRQvl~Ef 99 (136)
T PRK08298 87 SPCGVCQERLFYW 99 (136)
T ss_pred CCChhHHHHHHHh
Confidence 4588888876665
No 437
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=24.44 E-value=95 Score=19.87 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=4.6
Q ss_pred eeehHhHHHHHh
Q 033426 12 CHTVEAWNEQLQ 23 (119)
Q Consensus 12 i~~~~~~~~~~~ 23 (119)
+++.++++..+.
T Consensus 163 v~~~~el~~al~ 174 (202)
T cd02006 163 VTKPEELAAAFE 174 (202)
T ss_pred ECCHHHHHHHHH
Confidence 333333433333
No 438
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=24.37 E-value=2.2e+02 Score=18.88 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=39.9
Q ss_pred CCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhh-cCCCcccEEEEEeCCeEEE
Q 033426 28 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATD-WAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 28 ~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~-~~v~~~P~~~i~~~g~~~~ 96 (119)
+|+..|.+=|+|+.+--..+...-..+.++=.++.+..++....+++... -|+..+|.-.+..+|....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 56666666668999988888888888887755677777776655555443 3788899877766775544
No 439
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.33 E-value=1.4e+02 Score=16.56 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=16.5
Q ss_pred HHhhcCCCcccEEEEEeCCeEEE
Q 033426 74 VATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 74 ~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
.+..+++...++++++.||..+.
T Consensus 30 ~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 30 ALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHhCCCCceEEEEecCCCEEc
Confidence 45567776566788888998774
No 440
>PRK06163 hypothetical protein; Provisional
Probab=24.27 E-value=1.1e+02 Score=19.90 Aligned_cols=28 Identities=0% Similarity=-0.064 Sum_probs=15.6
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeC
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTA 38 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~ 38 (119)
.+++.+++...+..+...+++.+|.+..
T Consensus 145 ~v~~~~el~~al~~a~~~~~p~lIeV~i 172 (202)
T PRK06163 145 WAADEAHFEALVDQALSGPGPSFIAVRI 172 (202)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4555556666665554455666655553
No 441
>PLN02402 cytidine deaminase
Probab=24.25 E-value=1e+02 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=16.0
Q ss_pred CeEEEEEeCCCCHhHHhhhHHH
Q 033426 30 QLVVVDFTASWCGPCRFIAPFL 51 (119)
Q Consensus 30 ~~~vv~f~~~~C~~C~~~~~~~ 51 (119)
+..-|.+..+=|+.|+.+..+|
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 4444556678999999996665
No 442
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.09 E-value=13 Score=25.22 Aligned_cols=10 Identities=20% Similarity=0.816 Sum_probs=6.3
Q ss_pred CCCHhHHhhh
Q 033426 39 SWCGPCRFIA 48 (119)
Q Consensus 39 ~~C~~C~~~~ 48 (119)
-||+.||...
T Consensus 256 y~Cp~CQ~~~ 265 (269)
T PRK14811 256 HFCPQCQPLR 265 (269)
T ss_pred EECCCCcCCC
Confidence 3777777544
No 443
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=24.05 E-value=69 Score=15.46 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=11.8
Q ss_pred hCCCeEEEEEeCCCCHh
Q 033426 27 ETKQLVVVDFTASWCGP 43 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~ 43 (119)
.+.-..++-.+++.|.+
T Consensus 13 ~~k~isL~~L~SDGCiy 29 (44)
T PF08168_consen 13 DRKFISLMSLSSDGCIY 29 (44)
T ss_pred ecceEEEEEeccCCcee
Confidence 45556666689998864
No 444
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=23.61 E-value=2.3e+02 Score=18.78 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccch---hHHhhcCCCcccEEEEEeCCeEEEEEeCCC
Q 033426 30 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELK---SVATDWAVEAMPTFMFLKEGKIVDKVVGSK 102 (119)
Q Consensus 30 ~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~---~~~~~~~v~~~P~~~i~~~g~~~~~~~~~~ 102 (119)
.+++-.+|--.|++=+.+....+-+.++||++.+..-|..... -+++-..+-.+=.+.+.-.|+-.....|.+
T Consensus 69 ~ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~ 144 (226)
T KOG3286|consen 69 GPTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLG 144 (226)
T ss_pred CCcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCC
Confidence 4667777888899977777777777888999988877776432 233333333333333444666556666663
No 445
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=23.59 E-value=1.4e+02 Score=16.37 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=15.9
Q ss_pred CCCcccEEEEEeCCeEEEEEe
Q 033426 79 AVEAMPTFMFLKEGKIVDKVV 99 (119)
Q Consensus 79 ~v~~~P~~~i~~~g~~~~~~~ 99 (119)
|...+-.++.|.+|+++....
T Consensus 65 Gp~~~~~~l~f~~Gkl~~I~~ 85 (87)
T PF11006_consen 65 GPNGFMQILTFENGKLVRIES 85 (87)
T ss_pred CCCCcEEEEEEECCEEEEEEe
Confidence 566677788889999887654
No 446
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=23.58 E-value=66 Score=17.22 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=11.2
Q ss_pred ccEEEEEeCCeEEE
Q 033426 83 MPTFMFLKEGKIVD 96 (119)
Q Consensus 83 ~P~~~i~~~g~~~~ 96 (119)
.|++.++++|+.+.
T Consensus 12 ~P~v~W~k~g~~i~ 25 (81)
T cd04971 12 KPTLTWYHNGAVLN 25 (81)
T ss_pred CCcEEEEECCEECc
Confidence 56899999997664
No 447
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=87 Score=23.33 Aligned_cols=31 Identities=26% Similarity=0.762 Sum_probs=21.6
Q ss_pred cCCceeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHh
Q 033426 5 EEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGP 43 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~ 43 (119)
..+.+..+++-++|...+ .+++ +++ +|||+.
T Consensus 463 rds~~~~v~~~~eF~~aL----~~k~-iil---aPwcg~ 493 (551)
T KOG4163|consen 463 RDSHIVKVNTWEEFVKAL----DQKK-IIL---APWCGE 493 (551)
T ss_pred hhhheeeeeeHHHHHHHh----ccCC-EEE---ccccCc
Confidence 456777888888888888 3444 333 899975
No 448
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=72 Score=21.19 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=22.7
Q ss_pred hCCCeEEEEEeCCCCHhHHhhh-HHHHHHHHh
Q 033426 27 ETKQLVVVDFTASWCGPCRFIA-PFLAELAKK 57 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~~~-~~~~~l~~~ 57 (119)
..++..|-.||-+-||+|+++. .++-.+-..
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~ 68 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDN 68 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHHHHHHHHHHhh
Confidence 3458888999999999999886 444444433
No 449
>PLN02182 cytidine deaminase
Probab=23.39 E-value=44 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.2
Q ss_pred CCCCHhHHhhhHHH
Q 033426 38 ASWCGPCRFIAPFL 51 (119)
Q Consensus 38 ~~~C~~C~~~~~~~ 51 (119)
.+=|++|+.+..+|
T Consensus 129 ~sPCG~CRQfm~Ef 142 (339)
T PLN02182 129 GTPCGHCLQFLMEM 142 (339)
T ss_pred cCCCchhHHHHHHh
Confidence 46799999996666
No 450
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=23.01 E-value=93 Score=20.40 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.5
Q ss_pred CCCHhHHhhhHHHHHHHHhC
Q 033426 39 SWCGPCRFIAPFLAELAKKL 58 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~ 58 (119)
.-|+.|+.....++.+....
T Consensus 29 ~~C~~Cr~~~~~~e~~~~~l 48 (215)
T TIGR02451 29 ALCPECRARIAAFEALGGSL 48 (215)
T ss_pred HHCHHHHHHHHHHHHHHHHH
Confidence 47999999999998876654
No 451
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=22.78 E-value=3e+02 Score=20.07 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=26.6
Q ss_pred cccEEEEEeCCe-EEEEEeCC-CHHHHHHHHHHHhhh
Q 033426 82 AMPTFMFLKEGK-IVDKVVGS-KKEELQQTIAKHLAT 116 (119)
Q Consensus 82 ~~P~~~i~~~g~-~~~~~~~~-~~~~l~~~l~~~~~~ 116 (119)
-+|-|.+-++|+ +.....|. +++-+++.+.++-+.
T Consensus 302 ~IPDF~~~~~g~~vylEIvGfWtpeYL~rKl~kl~~~ 338 (379)
T PF05626_consen 302 MIPDFRFEHDGRRVYLEIVGFWTPEYLERKLEKLRKA 338 (379)
T ss_pred EccceeEEECCEEEEEEEecCCCHHHHHHHHHHHhhC
Confidence 378777777775 44477799 999999999987543
No 452
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=22.76 E-value=63 Score=19.32 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=20.4
Q ss_pred CCCeEEEEEeCC----CCHhHHhhhHHHHHH
Q 033426 28 TKQLVVVDFTAS----WCGPCRFIAPFLAEL 54 (119)
Q Consensus 28 ~~~~~vv~f~~~----~C~~C~~~~~~~~~l 54 (119)
.++..+.-||.+ ||..|..-...+..|
T Consensus 56 s~~~~~~AFWn~~e~~wCEdCdddLQ~yhsl 86 (120)
T PF06279_consen 56 SKKNLMTAFWNECEQRWCEDCDDDLQQYHSL 86 (120)
T ss_pred eccccEEEeccccchhhhhcchHHHHHHhhe
Confidence 477778889974 999998777666554
No 453
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=22.68 E-value=21 Score=16.53 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=4.1
Q ss_pred CCCHhHHhhh
Q 033426 39 SWCGPCRFIA 48 (119)
Q Consensus 39 ~~C~~C~~~~ 48 (119)
-||.+|....
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 3788888766
No 454
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.67 E-value=3.3e+02 Score=20.32 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEeCc----c-chhHH---hhcCCCcccE-EEEEeCCeEEEEEeCCCHHHHHHHH
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVDVD----E-LKSVA---TDWAVEAMPT-FMFLKEGKIVDKVVGSKKEELQQTI 110 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~----~-~~~~~---~~~~v~~~P~-~~i~~~g~~~~~~~~~~~~~l~~~l 110 (119)
+.+........+..+.+.+|.+.++..+.. + ..++. +.++-..-|- +++-++|--+.....+|.|.+...|
T Consensus 142 TS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi 221 (440)
T COG1570 142 TSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAI 221 (440)
T ss_pred cCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHH
Confidence 456677888899999999998777766652 1 12222 2333334354 4454777777767677777776665
Q ss_pred HH
Q 033426 111 AK 112 (119)
Q Consensus 111 ~~ 112 (119)
-.
T Consensus 222 ~~ 223 (440)
T COG1570 222 AA 223 (440)
T ss_pred Hh
Confidence 43
No 455
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.62 E-value=1.4e+02 Score=15.86 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC-ccchhHHhhcC-CCcccEE
Q 033426 31 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-DELKSVATDWA-VEAMPTF 86 (119)
Q Consensus 31 ~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-~~~~~~~~~~~-v~~~P~~ 86 (119)
+.|+.-.+..+.....+...|.++.++++++.++.-.. .-.+.++.+|. -.++|.+
T Consensus 4 ~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 4 MRVLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred CEEEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 44566667777777888888999999988877766655 44455666662 3345554
No 456
>COG3741 HutG N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=22.62 E-value=2.7e+02 Score=19.25 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcccEEEEE
Q 033426 40 WCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFL 89 (119)
Q Consensus 40 ~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~P~~~i~ 89 (119)
|-|+-..+..+++.+...++ ..+. +|+-+.+......+-...|-|.+.
T Consensus 126 ~~PYHaaL~~el~r~~a~~G-~avL-iDcHSm~s~ip~l~~G~lPdfniG 173 (272)
T COG3741 126 WKPYHAALRRELERLRAIFG-AAVL-IDCHSMRSHIPRLFEGPLPDFNIG 173 (272)
T ss_pred hccHHHHHHHHHHHHHhhcC-eEEE-EeccccccccccccCCCCCceeec
Confidence 66788888888888888874 3333 688777776677777888988775
No 457
>PHA02448 hypothetical protein
Probab=22.49 E-value=1.8e+02 Score=17.75 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=18.5
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHhhhhc
Q 033426 92 GKIVDKVVGSKKEELQQTIAKHLATAS 118 (119)
Q Consensus 92 g~~~~~~~~~~~~~l~~~l~~~~~~~~ 118 (119)
|+.........+.++.+||+.+.+...
T Consensus 164 gkykvtarnakpaqlrefiddlmenga 190 (192)
T PHA02448 164 GKYKVTARNAKPAQLREFIDDLMENGA 190 (192)
T ss_pred cceeeeeccCChHHHHHHHHHHHhcCC
Confidence 433333334578999999999987654
No 458
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=22.45 E-value=40 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.756 Sum_probs=10.4
Q ss_pred hCCCeEEEEEeCCCCHhHHh
Q 033426 27 ETKQLVVVDFTASWCGPCRF 46 (119)
Q Consensus 27 ~~~~~~vv~f~~~~C~~C~~ 46 (119)
..+..+|. .|.|.|+.|+.
T Consensus 78 kpGDhVI~-~f~p~CG~C~~ 96 (366)
T COG1062 78 KPGDHVIL-LFTPECGQCKF 96 (366)
T ss_pred CCCCEEEE-cccCCCCCCch
Confidence 34555555 55666655553
No 459
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=21.95 E-value=20 Score=24.36 Aligned_cols=6 Identities=33% Similarity=1.420 Sum_probs=3.3
Q ss_pred CCHhHH
Q 033426 40 WCGPCR 45 (119)
Q Consensus 40 ~C~~C~ 45 (119)
|||.||
T Consensus 267 ~CP~CQ 272 (274)
T PRK01103 267 FCPRCQ 272 (274)
T ss_pred ECcCCC
Confidence 555555
No 460
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=92 Score=19.59 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=24.0
Q ss_pred hCCCeEEEEEeCC--CCHhHHh-hhHHHHHHHHhCC-----CeEEEEEe
Q 033426 27 ETKQLVVVDFTAS--WCGPCRF-IAPFLAELAKKLP-----NVLFLKVD 67 (119)
Q Consensus 27 ~~~~~~vv~f~~~--~C~~C~~-~~~~~~~l~~~~~-----~v~~~~vd 67 (119)
.++|.++| |..| --|.|-. -.|-+.++..++. .|..+.||
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 46666554 6544 3355554 4577777766653 47777776
No 461
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=21.85 E-value=1.9e+02 Score=17.21 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=25.8
Q ss_pred cccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHH
Q 033426 82 AMPTFMFLKEGKIVDKVVGS-KKEELQQTIAKH 113 (119)
Q Consensus 82 ~~P~~~i~~~g~~~~~~~~~-~~~~l~~~l~~~ 113 (119)
.+|.++.|++-+-++-..-. +..++.+.+++.
T Consensus 82 ~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 82 GFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 79999999987777777666 888888888765
No 462
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.76 E-value=21 Score=24.43 Aligned_cols=6 Identities=50% Similarity=2.007 Sum_probs=2.9
Q ss_pred CCHhHH
Q 033426 40 WCGPCR 45 (119)
Q Consensus 40 ~C~~C~ 45 (119)
|||.||
T Consensus 276 ~CP~CQ 281 (282)
T PRK13945 276 WCPNCQ 281 (282)
T ss_pred ECCCCc
Confidence 455554
No 463
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=21.64 E-value=31 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=0.0
Q ss_pred chhHHhhcCCCcccEEEEEeCC
Q 033426 71 LKSVATDWAVEAMPTFMFLKEG 92 (119)
Q Consensus 71 ~~~~~~~~~v~~~P~~~i~~~g 92 (119)
...+.+.|++.++|+.++-+.+
T Consensus 8 s~~~~~~~~v~g~P~~~vNR~~ 29 (184)
T PF11551_consen 8 SSALMKQWGVSGYPSAMVNRKG 29 (184)
T ss_dssp ----------------------
T ss_pred hhcccccccCCCCCeEEEECCC
Confidence 4467789999999998887654
No 464
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=2e+02 Score=18.68 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=34.2
Q ss_pred hhCCCeEEEEEe--CCCCHhHHhhhHHHHHHHHhCC--CeEEEEEeCc
Q 033426 26 NETKQLVVVDFT--ASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVD 69 (119)
Q Consensus 26 ~~~~~~~vv~f~--~~~C~~C~~~~~~~~~l~~~~~--~v~~~~vd~~ 69 (119)
+.-+..+.|.|. ++.-|-|.-....+.+++-++. +++.+.+.++
T Consensus 28 d~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d 75 (224)
T KOG0854|consen 28 DYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD 75 (224)
T ss_pred hhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh
Confidence 456788888888 4577899999999999888874 6888776653
No 465
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.47 E-value=22 Score=24.17 Aligned_cols=6 Identities=33% Similarity=1.436 Sum_probs=3.1
Q ss_pred CCHhHH
Q 033426 40 WCGPCR 45 (119)
Q Consensus 40 ~C~~C~ 45 (119)
|||.||
T Consensus 266 ~CP~CQ 271 (272)
T PRK14810 266 YCPHCQ 271 (272)
T ss_pred ECcCCc
Confidence 455554
No 466
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=21.37 E-value=2.8e+02 Score=18.97 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=38.1
Q ss_pred eeeeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchh
Q 033426 9 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKS 73 (119)
Q Consensus 9 ~~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~ 73 (119)
|..|.+....-.-+..+..+...-+++-|... ++..+++++++.++.-.++.+|..+...
T Consensus 11 I~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-----~l~krv~~la~~~~s~~v~~cDV~~d~~ 70 (259)
T COG0623 11 IMGVANNRSIAWGIAKALAEQGAELAFTYQGE-----RLEKRVEELAEELGSDLVLPCDVTNDES 70 (259)
T ss_pred EEEecccccHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHHHhhccCCeEEecCCCCHHH
Confidence 34444555555555554455666666666653 7888888888888665667777765543
No 467
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.35 E-value=1.8e+02 Score=20.33 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=36.8
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhh----HHHHHHHHhCCCeEEEEEeCc
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIA----PFLAELAKKLPNVLFLKVDVD 69 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~----~~~~~l~~~~~~v~~~~vd~~ 69 (119)
.+.+..++.+.+..+...+.+.+|..++|+ +.-.... -...+++-+..-..++.++-.
T Consensus 183 ~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC-~~~~~~~~~~~~~~~klAvetg~~plye~~~g 244 (299)
T PRK11865 183 SIGYPEDFMEKVKKAKEVEGPAYIQVLQPC-PTGWGFPPEKTIEIGRLAVETGYWPLFEIENG 244 (299)
T ss_pred eCCCHHHHHHHHHHHHhCCCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHhcCceeEEEEECC
Confidence 345667888888887778899999999983 3322211 233455555444666766643
No 468
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=21.18 E-value=2.3e+02 Score=20.89 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhH
Q 033426 29 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSV 74 (119)
Q Consensus 29 ~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~ 74 (119)
..+.|-.||......=.-...+++.+.++.+++.+-.+|..+++-+
T Consensus 342 s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l 387 (438)
T COG4097 342 SDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYL 387 (438)
T ss_pred cCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCcc
Confidence 3444445554433333444568888888888988888888776543
No 469
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=20.93 E-value=1.5e+02 Score=15.82 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=17.3
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHHHHHH
Q 033426 82 AMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 112 (119)
Q Consensus 82 ~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~ 112 (119)
.-|.+++ ||. .+.+.+++.+.+.+++
T Consensus 54 ~gP~~~v--~~~---~~~~~~~e~i~~il~~ 79 (80)
T cd03081 54 CSPAAMI--DGE---VHGRVDPEKFDALLAE 79 (80)
T ss_pred CCCEEEE--CCE---EECCCCHHHHHHHHHc
Confidence 4687776 563 3445588888887764
No 470
>PRK14434 acylphosphatase; Provisional
Probab=20.74 E-value=1.7e+02 Score=16.32 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=24.3
Q ss_pred hHHhhcC-CCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhh
Q 033426 73 SVATDWA-VEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 115 (119)
Q Consensus 73 ~~~~~~~-v~~~P~~~i~~~g~~~~~~~~~~~~~l~~~l~~~~~ 115 (119)
.++.+++ ++++- .=..+|.+.-...|...+.+.+|++.+..
T Consensus 23 ~~A~~lg~l~G~V--~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 23 SLALEIGDIYGRV--WNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHHHcCCcEEEE--EECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 4566677 66532 12257766666666655567777776654
No 471
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=20.72 E-value=1.4e+02 Score=15.33 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=19.4
Q ss_pred CCeEEEEEe--CCCCHhHHhhh-HHHHHHHHhCCCeEE
Q 033426 29 KQLVVVDFT--ASWCGPCRFIA-PFLAELAKKLPNVLF 63 (119)
Q Consensus 29 ~~~~vv~f~--~~~C~~C~~~~-~~~~~l~~~~~~v~~ 63 (119)
=+.+++++. +..|++..... ..++++...+++..+
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~ 50 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPV 50 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-E
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 334455555 56888866554 566778888865333
No 472
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=20.69 E-value=1.7e+02 Score=16.17 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=16.3
Q ss_pred cCCceeeeeehHhHHHHHh
Q 033426 5 EEGQVIGCHTVEAWNEQLQ 23 (119)
Q Consensus 5 ~~~~~~~i~~~~~~~~~~~ 23 (119)
..+.+..|++.++|.+.+.
T Consensus 49 ~~gDLLPInNDdNf~kAls 67 (80)
T cd06403 49 PHGDLLPINNDDNFLKALS 67 (80)
T ss_pred CCCCEecccCcHHHHHHHH
Confidence 3578899999999999995
No 473
>PF11726 DUF3296: Protein of unknown function (DUF3296); InterPro: IPR021723 This family represents the Inovirus Gp2 protein. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII). In turn, viral DNA replication initiates at the 3'-OH of the cleavage site. After one round of rolling circle synthesis, protein G2P is linked to the newly synthesized ssDNA and joins the ends of the displaced strand to generate a circular single-stranded molecule ready to be packed into a virion. The dsRFI/ RFII forms of the phage DNA has the capability to integrate into the host genome via site-specific homologous recombination []. This feature has probably led to the spread of the gene throughout the gammaproteobacteria by lateral gene transfer.
Probab=20.61 E-value=1.8e+02 Score=18.26 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=20.4
Q ss_pred HhhhHHHHHHHHhCCCeEEEEEeC
Q 033426 45 RFIAPFLAELAKKLPNVLFLKVDV 68 (119)
Q Consensus 45 ~~~~~~~~~l~~~~~~v~~~~vd~ 68 (119)
+++...++.+.+.|+.+.+++||.
T Consensus 1 ~~i~~~i~~~l~~ysr~l~iRvDL 24 (180)
T PF11726_consen 1 QRIREYIDQALERYSRLLVIRVDL 24 (180)
T ss_pred ChHHHHHHHHHHhCCcEEEEEEEC
Confidence 356678889999999999999997
No 474
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=20.50 E-value=1.2e+02 Score=16.53 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=21.6
Q ss_pred CeEEEEEeCccchhHHhhcC----CCcccEEE
Q 033426 60 NVLFLKVDVDELKSVATDWA----VEAMPTFM 87 (119)
Q Consensus 60 ~v~~~~vd~~~~~~~~~~~~----v~~~P~~~ 87 (119)
+-.-+.|.+..+++++-++. -+++|.++
T Consensus 25 ~~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l 56 (80)
T PF07351_consen 25 GEDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL 56 (80)
T ss_pred CCCeEEeecCCChhheeEecccccCCccceEE
Confidence 45677888999999998884 46899853
No 475
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.47 E-value=87 Score=16.81 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=9.8
Q ss_pred CcccEEEEEeCCeEEE
Q 033426 81 EAMPTFMFLKEGKIVD 96 (119)
Q Consensus 81 ~~~P~~~i~~~g~~~~ 96 (119)
+-=.|+.+|++|+.--
T Consensus 13 kDGstvyiFKDGKMam 28 (73)
T PF11525_consen 13 KDGSTVYIFKDGKMAM 28 (73)
T ss_dssp TTSEEEEEETTS-EEE
T ss_pred CCCCEEEEEcCCceeh
Confidence 3345788888887543
No 476
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=20.33 E-value=71 Score=20.42 Aligned_cols=78 Identities=14% Similarity=0.022 Sum_probs=42.7
Q ss_pred eeeehHhHHHHHhhchhCCCeEEEEEeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeCccchhHHhhcCCCcc-cEEEE
Q 033426 11 GCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAM-PTFMF 88 (119)
Q Consensus 11 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~-P~~~i 88 (119)
++++.++|...+..+..+..-++|+=.+..-..-.--...-+.+.-+.|+|.++.|.++....-..+|.++.+ |.+++
T Consensus 97 ~~~~p~el~~ald~~pWr~PdvfvfR~~~~~~~~~~~~~LA~DvyPn~PNVr~~~V~F~~~~Fd~p~f~v~~vGPFvvv 175 (178)
T PF12249_consen 97 ELTDPDELLAALDSSPWRAPDVFVFRGSAEDPDDGYTLRLAEDVYPNQPNVRRYTVTFDPEVFDDPRFTVTQVGPFVVV 175 (178)
T ss_pred ccCCHHHHHHHHHhCCCCCCCEEEEcCCCCCCCCCeEEeeecccCCCCCCceeeeeeeCHHHcCCCCCeEeeeCCeEEE
Confidence 3567888888888776666666665444411111111112233333445788888888764333466666654 44444
No 477
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=20.32 E-value=1.6e+02 Score=18.56 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=32.0
Q ss_pred EeCCCCHhHHhhhHHHHHHHHhCCCeEEEEEeC-c----cchhHHhhcCCCcccEEEEEeCCeEEE
Q 033426 36 FTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV-D----ELKSVATDWAVEAMPTFMFLKEGKIVD 96 (119)
Q Consensus 36 f~~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~-~----~~~~~~~~~~v~~~P~~~i~~~g~~~~ 96 (119)
|+...|+.|+++.-.+....-.| ....++. . ..+++.+......+|+++. +|..+.
T Consensus 3 y~~~~s~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ 63 (210)
T TIGR01262 3 YSYWRSSCSYRVRIALALKGIDY---EYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLT 63 (210)
T ss_pred ccCCCCCchHHHHHHHHHCCCCc---eEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEee
Confidence 34567788887776666543333 3334443 1 1344555566778999864 664443
No 478
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=20.31 E-value=71 Score=19.01 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=16.2
Q ss_pred CCCHhHHhhhHHHHHHHHhCCCeEEEEEeCc
Q 033426 39 SWCGPCRFIAPFLAELAKKLPNVLFLKVDVD 69 (119)
Q Consensus 39 ~~C~~C~~~~~~~~~l~~~~~~v~~~~vd~~ 69 (119)
+-|+.|+.+...+. .+++.++..+.+
T Consensus 81 sPCG~Crq~l~e~~-----~~~~~v~~~~~~ 106 (127)
T TIGR01354 81 SPCGACRQVLAEFA-----GPDTPIYMTNND 106 (127)
T ss_pred CccHHHHHHHHHhC-----CCCcEEEEECCC
Confidence 67888988866663 135555555443
No 479
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.31 E-value=91 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.6
Q ss_pred eCCCCHhHHhhhHHHHH
Q 033426 37 TASWCGPCRFIAPFLAE 53 (119)
Q Consensus 37 ~~~~C~~C~~~~~~~~~ 53 (119)
+.+-|+.|+.+..+|..
T Consensus 101 f~tPCG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGN 117 (173)
T ss_pred cCCCcHHHHHHHHHHhh
Confidence 45679999999887765
No 480
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.23 E-value=1.5e+02 Score=21.87 Aligned_cols=29 Identities=10% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCHhHHhhhHHHHHHHHhCCCeEEEEEe
Q 033426 38 ASWCGPCRFIAPFLAELAKKLPNVLFLKVD 67 (119)
Q Consensus 38 ~~~C~~C~~~~~~~~~l~~~~~~v~~~~vd 67 (119)
.+.|+.|++-...+.+-.++. ++-.+.+-
T Consensus 343 tstCgtCtrcga~m~keiE~~-GIPvV~i~ 371 (431)
T TIGR01917 343 TSTUGTCTRCGATMVKEIERA-GIPVVHIC 371 (431)
T ss_pred cCCCCcchhHHHHHHHHHHHc-CCCEEEEe
Confidence 678999998888887777775 55555443
No 481
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=20.02 E-value=1.4e+02 Score=15.01 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=22.5
Q ss_pred EEeCCeEEEEEeCCCHHHHHHHHHHHhhh
Q 033426 88 FLKEGKIVDKVVGSKKEELQQTIAKHLAT 116 (119)
Q Consensus 88 i~~~g~~~~~~~~~~~~~l~~~l~~~~~~ 116 (119)
..++|+....-.|.+..++...|..-+.+
T Consensus 4 ~lpdG~~~~~~~g~T~~d~A~~I~~~l~~ 32 (60)
T PF02824_consen 4 YLPDGSIKELPEGSTVLDVAYSIHSSLAK 32 (60)
T ss_dssp EETTSCEEEEETTBBHHHHHHHHSHHHHH
T ss_pred ECCCCCeeeCCCCCCHHHHHHHHCHHHHh
Confidence 44899998877777998888888766654
Done!