Query 033431
Match_columns 119
No_of_seqs 21 out of 23
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 23:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgc_A Protein (GCN4); basic d 90.9 0.24 8.4E-06 31.8 3.6 33 39-71 28-60 (63)
2 3lay_A Zinc resistance-associa 86.6 1.1 3.8E-05 33.8 5.2 41 36-79 69-109 (175)
3 2wt7_A Proto-oncogene protein 84.9 2 7E-05 27.0 5.0 34 39-72 21-54 (63)
4 1t2k_D Cyclic-AMP-dependent tr 83.5 1.5 5E-05 27.3 3.8 33 40-72 21-53 (61)
5 1t2k_D Cyclic-AMP-dependent tr 83.4 2.6 9E-05 26.1 5.0 34 40-73 28-61 (61)
6 2lw1_A ABC transporter ATP-bin 83.4 1.1 3.9E-05 29.6 3.5 30 36-65 17-46 (89)
7 1dh3_A Transcription factor CR 82.9 0.97 3.3E-05 28.2 2.8 31 39-69 20-50 (55)
8 2zqm_A Prefoldin beta subunit 80.8 3.6 0.00012 27.1 5.2 37 40-76 76-112 (117)
9 1jnm_A Proto-oncogene C-JUN; B 80.8 3 0.0001 26.0 4.6 34 39-72 20-53 (62)
10 4dzn_A Coiled-coil peptide CC- 78.8 3.1 0.00011 24.5 3.9 31 41-71 2-32 (33)
11 1ci6_A Transcription factor AT 78.1 4 0.00014 25.8 4.6 33 39-71 21-53 (63)
12 2jee_A YIIU; FTSZ, septum, coi 77.3 6.3 0.00021 27.0 5.6 45 40-93 26-77 (81)
13 1fxk_A Prefoldin; archaeal pro 73.9 5.6 0.00019 25.9 4.6 34 40-73 71-104 (107)
14 2z5i_A TM, general control pro 72.0 4.1 0.00014 25.3 3.3 31 34-64 11-42 (52)
15 1t6f_A Geminin; coiled-coil, c 69.7 4.1 0.00014 24.7 2.8 22 40-61 13-34 (37)
16 2yy0_A C-MYC-binding protein; 68.0 9.7 0.00033 23.7 4.5 32 40-71 18-49 (53)
17 4dzo_A Mitotic spindle assembl 62.4 13 0.00045 26.4 4.8 55 40-95 3-64 (123)
18 2y7c_A Type-1 restriction enzy 61.2 15 0.00052 27.8 5.3 42 36-77 374-419 (464)
19 3mtu_E Head morphogenesis prot 61.1 8.1 0.00028 26.4 3.3 25 40-64 43-67 (77)
20 2yy0_A C-MYC-binding protein; 60.6 9.3 0.00032 23.8 3.3 25 40-64 25-49 (53)
21 1nkp_B MAX protein, MYC proto- 60.5 8.8 0.0003 24.7 3.3 25 40-64 53-77 (83)
22 3mud_A DNA repair protein XRCC 60.0 13 0.00045 28.5 4.8 35 30-64 130-165 (175)
23 3rvy_A ION transport protein; 58.6 5.4 0.00018 29.7 2.3 16 19-34 215-230 (285)
24 4etp_A Kinesin-like protein KA 58.0 15 0.0005 30.2 5.0 36 40-75 9-44 (403)
25 2oa5_A Hypothetical protein BQ 57.9 4.9 0.00017 29.1 1.9 25 40-64 7-31 (110)
26 1hjb_A Ccaat/enhancer binding 55.0 34 0.0011 23.2 5.7 43 41-96 36-78 (87)
27 2wt7_B Transcription factor MA 54.9 20 0.00068 24.7 4.6 30 43-72 57-86 (90)
28 1uii_A Geminin; human, DNA rep 54.9 10 0.00034 26.2 3.0 22 41-62 53-74 (83)
29 2wt7_A Proto-oncogene protein 53.2 30 0.001 21.5 4.9 33 40-72 29-61 (63)
30 3s9g_A Protein hexim1; cyclin 53.1 14 0.00046 26.7 3.6 31 40-70 64-94 (104)
31 2w6b_A RHO guanine nucleotide 52.8 12 0.00042 24.3 3.0 22 44-65 13-34 (56)
32 1jnm_A Proto-oncogene C-JUN; B 51.3 9.4 0.00032 23.7 2.2 34 40-73 28-61 (62)
33 3ra3_A P1C; coiled coil domain 48.5 16 0.00055 20.8 2.7 22 43-64 2-23 (28)
34 1nlw_A MAD protein, MAX dimeri 47.1 19 0.00066 23.6 3.3 23 42-64 55-77 (80)
35 1wlq_A Geminin; coiled-coil; 2 46.8 12 0.0004 25.9 2.3 23 40-62 44-66 (83)
36 1yf2_A Type I restriction-modi 45.0 42 0.0014 24.9 5.3 42 36-77 167-208 (425)
37 2zvf_A Alanyl-tRNA synthetase; 44.3 31 0.001 24.0 4.2 28 41-68 32-59 (171)
38 1ydx_A Type I restriction enzy 43.4 43 0.0015 25.4 5.3 42 36-77 165-206 (406)
39 3tnu_A Keratin, type I cytoske 40.4 44 0.0015 23.2 4.6 32 39-70 43-74 (131)
40 2y7c_A Type-1 restriction enzy 39.9 48 0.0016 25.0 5.0 42 36-77 161-206 (464)
41 2wuj_A Septum site-determining 39.7 24 0.00083 21.8 2.8 28 43-70 29-56 (57)
42 1am9_A Srebp-1A, protein (ster 39.2 30 0.001 22.5 3.3 24 41-64 50-73 (82)
43 1nkp_A C-MYC, MYC proto-oncoge 39.2 30 0.001 22.9 3.3 25 42-66 60-84 (88)
44 3tnu_B Keratin, type II cytosk 38.6 49 0.0017 22.8 4.6 31 40-70 42-72 (129)
45 1ci6_A Transcription factor AT 38.2 71 0.0024 19.9 4.9 34 39-72 28-61 (63)
46 3nxq_A Angiotensin-converting 37.7 88 0.003 27.6 7.0 66 5-95 176-241 (629)
47 1zme_C Proline utilization tra 36.1 31 0.0011 20.5 2.8 24 40-63 43-66 (70)
48 1ydx_A Type I restriction enzy 35.9 67 0.0023 24.3 5.3 43 36-78 353-395 (406)
49 2xdj_A Uncharacterized protein 35.9 89 0.003 20.8 5.3 38 37-74 23-63 (83)
50 1gu4_A CAAT/enhancer binding p 35.8 66 0.0022 21.3 4.6 31 41-71 36-66 (78)
51 2wvr_A Geminin; DNA replicatio 35.5 26 0.0009 27.8 3.0 23 41-63 122-144 (209)
52 1p9i_A Cortexillin I/GCN4 hybr 35.1 37 0.0013 19.6 2.8 20 45-64 3-22 (31)
53 2zxx_A Geminin; coiled-coil, c 35.1 20 0.00068 24.4 2.0 22 41-62 41-62 (79)
54 1yf2_A Type I restriction-modi 35.0 74 0.0025 23.5 5.3 42 36-77 377-418 (425)
55 3u06_A Protein claret segregat 34.6 55 0.0019 27.0 4.9 35 41-75 10-44 (412)
56 1a93_B MAX protein, coiled coi 34.5 47 0.0016 19.5 3.3 22 41-62 7-28 (34)
57 1gd2_E Transcription factor PA 34.4 44 0.0015 21.8 3.5 29 41-69 29-57 (70)
58 3zwh_Q Myosin-9; Ca-binding pr 33.8 31 0.0011 21.2 2.5 27 38-64 3-29 (45)
59 2v6x_B DOA4-independent degrad 33.6 12 0.00041 23.5 0.6 15 42-56 39-53 (54)
60 1go4_E MAD1 (mitotic arrest de 33.6 64 0.0022 22.6 4.5 32 42-73 13-44 (100)
61 3teq_A Stromal interaction mol 33.3 1.3E+02 0.0043 21.2 7.6 63 5-69 27-89 (101)
62 3s4r_A Vimentin; alpha-helix, 32.6 52 0.0018 22.1 3.8 8 34-41 25-32 (93)
63 3gpv_A Transcriptional regulat 32.2 37 0.0013 23.7 3.1 30 41-70 102-131 (148)
64 1nkp_B MAX protein, MYC proto- 31.9 82 0.0028 20.0 4.5 31 41-71 47-77 (83)
65 2zvf_A Alanyl-tRNA synthetase; 31.7 77 0.0026 21.9 4.7 32 44-75 28-59 (171)
66 3ni0_A Bone marrow stromal ant 29.7 73 0.0025 22.7 4.2 34 25-58 51-84 (99)
67 2rqw_B 24-meric peptide from s 29.3 22 0.00075 20.0 1.2 11 97-107 13-23 (26)
68 3twe_A Alpha4H; unknown functi 29.2 32 0.0011 19.3 1.9 17 40-56 7-23 (27)
69 3efg_A Protein SLYX homolog; x 28.9 1.2E+02 0.0042 19.8 5.3 50 2-59 11-60 (78)
70 1hlo_A Protein (transcription 28.9 23 0.00078 22.7 1.4 20 42-61 58-77 (80)
71 1dip_A Delta-sleep-inducing pe 28.6 47 0.0016 22.8 3.0 23 40-62 21-43 (78)
72 1gd2_E Transcription factor PA 28.6 63 0.0022 21.0 3.5 30 42-71 37-66 (70)
73 2jee_A YIIU; FTSZ, septum, coi 27.5 99 0.0034 21.0 4.5 29 43-71 43-71 (81)
74 2oqq_A Transcription factor HY 27.3 83 0.0028 19.3 3.6 29 35-63 11-39 (42)
75 3rrk_A V-type ATPase 116 kDa s 27.1 1.1E+02 0.0037 23.5 5.2 35 40-74 232-270 (357)
76 3gp4_A Transcriptional regulat 26.7 80 0.0027 21.9 4.0 32 40-71 87-118 (142)
77 3gna_A RAG-1, V(D)J recombinat 25.8 81 0.0028 22.2 3.9 32 16-49 55-86 (96)
78 1go4_E MAD1 (mitotic arrest de 24.8 68 0.0023 22.4 3.3 25 40-64 18-42 (100)
79 2oar_A Large-conductance mecha 24.8 64 0.0022 24.7 3.4 22 18-39 97-119 (174)
80 4f43_A Protelomerase; recombin 24.6 44 0.0015 27.9 2.7 56 34-94 216-271 (320)
81 1hjb_A Ccaat/enhancer binding 24.2 1.4E+02 0.0048 20.1 4.8 38 36-73 38-75 (87)
82 3brv_B NF-kappa-B essential mo 24.2 71 0.0024 21.4 3.2 28 42-69 13-43 (70)
83 4etp_A Kinesin-like protein KA 23.9 82 0.0028 25.7 4.2 28 43-70 5-32 (403)
84 1gmj_A ATPase inhibitor; coile 23.8 66 0.0023 22.1 3.0 19 39-57 56-74 (84)
85 3m91_A Proteasome-associated A 23.6 1.4E+02 0.0047 18.5 5.0 33 41-73 9-41 (51)
86 3us6_A Histidine-containing ph 23.4 56 0.0019 23.1 2.7 35 58-95 4-38 (153)
87 2v66_B Nuclear distribution pr 22.4 1.2E+02 0.0042 21.4 4.3 29 42-70 36-64 (111)
88 4e61_A Protein BIM1; EB1-like 22.3 1.2E+02 0.0041 21.5 4.2 35 26-60 3-37 (106)
89 3l4f_A RHO guanine nucleotide 22.1 78 0.0027 20.7 3.0 23 45-67 11-33 (61)
90 3he5_A Synzip1; heterodimeric 21.8 87 0.003 19.6 3.0 28 44-72 6-33 (49)
91 2kog_A Vesicle-associated memb 21.8 21 0.0007 25.1 0.1 23 46-69 73-95 (119)
92 3oja_B Anopheles plasmodium-re 21.6 1.4E+02 0.0049 23.9 5.1 17 48-64 544-560 (597)
93 3e98_A GAF domain of unknown f 21.3 77 0.0026 24.3 3.3 68 27-94 64-136 (252)
94 2rhf_A DNA helicase RECQ; HRDC 20.7 62 0.0021 20.1 2.2 21 57-77 4-24 (77)
95 2lxl_A Vacuolar protein sortin 20.1 49 0.0017 24.7 1.9 15 95-109 160-174 (183)
No 1
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=90.93 E-value=0.24 Score=31.79 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
-|..++.||.+...|..+|..|...+-.||++|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999998876
No 2
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=86.62 E-value=1.1 Score=33.75 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=31.4
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhccC
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTES 79 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ds 79 (119)
|.+||.++.+|.++- +++.+.++..||+-+++|-++..+|+
T Consensus 69 T~EQq~ql~~I~~e~---r~~~~~Lr~ql~akr~EL~aL~~a~~ 109 (175)
T 3lay_A 69 TTEQQATAQKIYDDY---YTQTSALRQQLISKRYEYNALLTASS 109 (175)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 368888888876543 45667789999999999988877654
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.92 E-value=2 Score=27.02 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=28.3
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
.+..|+.|+.+.+.|..+|..|...+-..++++.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999887777654
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.53 E-value=1.5 Score=27.34 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=23.9
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
+..++.||.+.+.|..+|..|...+-..++++.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888887777766666543
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.44 E-value=2.6 Score=26.13 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=30.1
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
+.+.+.|+.+...|..+...|+.-+..+|+.|++
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678899999999999999999999999998874
No 6
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=83.38 E-value=1.1 Score=29.61 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=27.3
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHH
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMW 65 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw 65 (119)
|...|++++.|+.+++.|.++...|...|-
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999999988774
No 7
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=82.92 E-value=0.97 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.3
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQ 69 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq 69 (119)
.|.++++||.+...|.++|..|+..+-..++
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999998766654
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.82 E-value=3.6 Score=27.13 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=31.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEAT 76 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa 76 (119)
..+++.++.+...|.+.-+.+.+.|-+||..|.+.-.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678888999999999999999999999998875443
No 9
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.75 E-value=3 Score=26.02 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=28.9
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
.+..|+.||.+...|..+|..|...+-..++++-
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999988887754
No 10
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.83 E-value=3.1 Score=24.47 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=25.8
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
.+|.+|..|...|+++-.+|+=.+-+.||+.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3688888999999999999888888888864
No 11
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.14 E-value=4 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.4
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
.+.+++.|+.+-..|.++|..|+..+-..+.+.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999988887765
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.33 E-value=6.3 Score=27.00 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhhhhhhHHhHHHHHHHhHH-------HHHHHHHHHHHHHHHhhccCCcchHHHHHHHHcC
Q 033431 40 QNDIEGLESEKESLVKANKD-------LKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~-------l~~~Mw~wKq~LfaeAa~ds~~v~asRLr~IyGe 93 (119)
|-+|++|.++..+|..+|.. +....-.+|++.- ..-+|||.++|-
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~---------~wq~Rl~~LLgk 77 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN---------GWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHh
Confidence 56777777777775554444 2223333443332 233677887773
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.86 E-value=5.6 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=30.4
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
..+++.++.+..+|.+.-+.+.+.|-+||..|++
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999874
No 14
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=72.01 E-value=4.1 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred hhchh-hhhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 34 LRSVK-QQNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 34 ~RS~~-QQ~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
=||+. =|+.|++||.+..+=+..++.++..|
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35543 38899999999999898999988865
No 15
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.72 E-value=4.1 Score=24.71 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.4
Q ss_pred hhhhhhhHHhHHHHHHHhHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLK 61 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~ 61 (119)
.++|+.-.+++.+|+++|+.|.
T Consensus 13 hk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 13 HKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 4678999999999999999875
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.00 E-value=9.7 Score=23.68 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.9
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
.-++++|..|.+.|++.+..|+.+.=.-+.+|
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777776666654
No 17
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=62.41 E-value=13 Score=26.39 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=43.2
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc-------cCCcchHHHHHHHHcCCC
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATT-------ESALVPLARLKAIYGDVP 95 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~-------ds~~v~asRLr~IyGe~~ 95 (119)
+++|.+|+++.+++.+.|.-|+ -+|.=|-+-|.+|-. |-.+-.-=||+-.|.+.+
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLK-evF~~ks~eFReav~~LlGykId~~~~~~~rl~S~Ya~~~ 64 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLK-EVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHP 64 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEEETTCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCeEEEEccCCeEEEEEeecCCC
Confidence 5789999999999999999986 488889999999865 333334457778887743
No 18
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=61.19 E-value=15 Score=27.81 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=33.7
Q ss_pred chhhhhhh----hhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 033431 36 SVKQQNDI----EGLESEKESLVKANKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 36 S~~QQ~~I----e~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+++-|++| +.+-+..+.|.+.+....+.+-..||.|+..|=.
T Consensus 374 pl~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~af~ 419 (464)
T 2y7c_A 374 PVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFR 419 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55666677 5677778889888888888899999999998854
No 19
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=61.05 E-value=8.1 Score=26.41 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.1
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
++.|++||++....+..++.+...|
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7899999999999999999988764
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.58 E-value=9.3 Score=23.76 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=15.2
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
|.+.++|+++...|.++++.+++++
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666554
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.50 E-value=8.8 Score=24.70 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=15.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
|.+++.|+++++.|+++|..|...+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777766666554
No 22
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=60.00 E-value=13 Score=28.48 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHhhhch-hhhhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 30 AALTLRSV-KQQNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 30 ~~L~~RS~-~QQ~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
+..+.|++ ..|++|++||++....+..++.+...|
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566766 689999999999999999999988775
No 23
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=58.58 E-value=5.4 Score=29.72 Aligned_cols=16 Identities=13% Similarity=0.359 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHhh
Q 033431 19 TVVNTCLIASFAALTL 34 (119)
Q Consensus 19 ~vI~~~l~~sf~~L~~ 34 (119)
.|+.+++++||+++++
T Consensus 215 ~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 215 FFIPFIFVVTFVMINL 230 (285)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4667777777777653
No 24
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.00 E-value=15 Score=30.19 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=30.8
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEA 75 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeA 75 (119)
+.+|+.|++++.+|.++.+.+...+..++++|..|-
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999999999888765
No 25
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=57.93 E-value=4.9 Score=29.08 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
+-..|+|+++..-|+-|||.|++.|
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999877
No 26
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.99 E-value=34 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=27.1
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHcCCCC
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPT 96 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ds~~v~asRLr~IyGe~~~ 96 (119)
.+.+.++.+-..|.++|..|+..+=..++++ .+||.+|-.-|.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~-------------~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSREL-------------STLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHCcH
Confidence 3445666777777777877777777776665 356666665443
No 27
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.93 E-value=20 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.064 Sum_probs=24.4
Q ss_pred hhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 43 IEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 43 Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
...|..+++.|+.+|..+..-+-.||+.+=
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888899999999999999998764
No 28
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.91 E-value=10 Score=26.25 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=17.6
Q ss_pred hhhhhhHHhHHHHHHHhHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKK 62 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~ 62 (119)
.+|+.|+++..+|+++|+.++.
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888765
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.17 E-value=30 Score=21.46 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=27.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
+.+.+.|+.+...|.++-..|+.-.-.|++-|.
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788899999999998888888888888775
No 30
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.09 E-value=14 Score=26.66 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=25.3
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
-.+|.+|+++.+-|+.+|..|+.-==-|+++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4689999999999999999998765555554
No 31
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=52.80 E-value=12 Score=24.33 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.6
Q ss_pred hhhHHhHHHHHHHhHHHHHHHH
Q 033431 44 EGLESEKESLVKANKDLKKRMW 65 (119)
Q Consensus 44 e~Leaek~SL~k~Nk~l~~~Mw 65 (119)
=+|..+..+|+++|+.|+++|=
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788889999999988874
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.35 E-value=9.4 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=24.6
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
+.+++.|+.+.+.|..+-..|+.-+-..|+.|++
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567888889899998888888888888887763
No 33
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.50 E-value=16 Score=20.75 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=11.9
Q ss_pred hhhhHHhHHHHHHHhHHHHHHH
Q 033431 43 IEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 43 Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
|++||=|-+.|.+.-.+|+..+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 5566655555555555554444
No 34
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=47.09 E-value=19 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=16.2
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
+...|+++++.|+.+|..|+.++
T Consensus 55 ~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 55 SDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888877777664
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=46.78 E-value=12 Score=25.92 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=18.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKK 62 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~ 62 (119)
+.+|+.+++|+..|+++|+.|+.
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888899999999988764
No 36
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=45.00 E-value=42 Score=24.89 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=34.9
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+++-|++|-+.-...+.+...++..-..+-..|+.|+.++=.
T Consensus 167 pl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 167 PLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888777788999998888888888999999988766
No 37
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.26 E-value=31 Score=23.95 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=15.5
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWK 68 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wK 68 (119)
.+|+.|.++...|+++.+.++..+...+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 38
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=43.42 E-value=43 Score=25.37 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=35.8
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+++-|++|-+.-...+.+.+.++.+-+.+=..|+.||.++-.
T Consensus 165 ~l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f~ 206 (406)
T 1ydx_A 165 NKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFS 206 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888888888999999988765
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.40 E-value=44 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.2
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
=.+.|+.|+.|.++|+..+.+|-.++-+-.+.
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999998888766554
No 40
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=39.88 E-value=48 Score=25.04 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=32.8
Q ss_pred chhhhhhhh----hhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 033431 36 SVKQQNDIE----GLESEKESLVKANKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 36 S~~QQ~~Ie----~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+++-|++|- .+-+..+.|.+....+.+.+-..||.|+.+|-.
T Consensus 161 pl~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll~~~~~ 206 (464)
T 2y7c_A 161 PLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVN 206 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566553 677778888888888888888999999999854
No 41
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.74 E-value=24 Score=21.76 Aligned_cols=28 Identities=7% Similarity=0.325 Sum_probs=15.6
Q ss_pred hhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 43 IEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 43 Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
++.+.++.+.|.++|..|+..+-..+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666667777777777666544443
No 42
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.23 E-value=30 Score=22.47 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.3
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
.+|..|+.+...|..++..|+..+
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777654
No 43
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.16 E-value=30 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.354 Sum_probs=17.4
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRMWD 66 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~Mw~ 66 (119)
+...|+++++.|+.+|..|+.++-.
T Consensus 60 ~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 60 EEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888877643
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.56 E-value=49 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.6
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
.+.|+.|+.|.++|+..+.+|-.++-+-.+.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5678999999999999999998888766553
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.17 E-value=71 Score=19.88 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=23.2
Q ss_pred hhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
-+.+.++|+.+-+.|+..-..|..-+-.||+-|.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777777777766543
No 46
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=37.74 E-value=88 Score=27.65 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCcchH
Q 033431 5 NKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPL 84 (119)
Q Consensus 5 n~~~~~a~~a~n~n~vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ds~~v~a 84 (119)
.++|.+..+++..|-+-++.-+ ||| .|+.++++++.+.|.++-+-|-..+-...+
T Consensus 176 ~~~V~LrneaAk~~Gf~d~~e~-------wR~---~Ye~~~~~~~~e~l~~~i~PLy~~Lha~vR--------------- 230 (629)
T 3nxq_A 176 EDFTALSNEAYKQDGFTDTGAY-------WRS---WYNSPTFEDDLEHLYQQLEPLYLNLHAFVR--------------- 230 (629)
T ss_dssp HHHHHHHHHHHHTTTCSSHHHH-------HHH---TTCCTTHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHH-------HHH---hcCHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------
Confidence 4678888888888877776665 787 467888999999988888877766666554
Q ss_pred HHHHHHHcCCC
Q 033431 85 ARLKAIYGDVP 95 (119)
Q Consensus 85 sRLr~IyGe~~ 95 (119)
.||+..||++.
T Consensus 231 ~~L~~~Yg~~~ 241 (629)
T 3nxq_A 231 RALHRRYGDRY 241 (629)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHhccccc
Confidence 46777888653
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.14 E-value=31 Score=20.46 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.6
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKR 63 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~ 63 (119)
...|+.|+.+...|+.....|...
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999988888777664
No 48
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=35.93 E-value=67 Score=24.32 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=35.2
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTE 78 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~d 78 (119)
+.+-|.+|-+.-...+.+...++..-+.+=..|+.|+..|=..
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf~G 395 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLFPD 395 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888777788888888777788889999999887553
No 49
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.90 E-value=89 Score=20.84 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=30.6
Q ss_pred hhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHH---HHHHH
Q 033431 37 VKQQNDIEGLESEKESLVKANKDLKKRMWDWKQ---QLYAE 74 (119)
Q Consensus 37 ~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq---~Lfae 74 (119)
++-|.+|+.|+.|...|+-.+..+.--+-..++ ++|.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999888888888888777 45543
No 50
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.84 E-value=66 Score=21.31 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=22.8
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
...+.++.+-..|.++|..|+..+-..++++
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888888888887777665
No 51
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.55 E-value=26 Score=27.75 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=18.7
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKR 63 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~ 63 (119)
.+|+.|++|+..|+++|..|+.-
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999888753
No 52
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=35.07 E-value=37 Score=19.61 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=15.7
Q ss_pred hhHHhHHHHHHHhHHHHHHH
Q 033431 45 GLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 45 ~Leaek~SL~k~Nk~l~~~M 64 (119)
.|.+-..||..+||.|+...
T Consensus 3 qlnallasleaenkqlkakv 22 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKV 22 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999998764
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.07 E-value=20 Score=24.41 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=17.8
Q ss_pred hhhhhhHHhHHHHHHHhHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKK 62 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~ 62 (119)
.+|+.++++...|+++|+.|+.
T Consensus 41 ~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999988754
No 54
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=35.04 E-value=74 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=31.6
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+++-|++|.+.-...+.+...++.--+.+-..|+.|+..+=.
T Consensus 377 pl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l~~ 418 (425)
T 1yf2_A 377 PLEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELLLT 418 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566677787766677777777777777788899999987743
No 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.64 E-value=55 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=27.8
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEA 75 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeA 75 (119)
.+++.|++++..|.++++.+...+..-+++|+.+-
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888887643
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.51 E-value=47 Score=19.55 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=13.0
Q ss_pred hhhhhhHHhHHHHHHHhHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKK 62 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~ 62 (119)
+++.+.++|++.|++.|.-|..
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHH
Confidence 3455666666666666665544
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.37 E-value=44 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=15.7
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQ 69 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq 69 (119)
..|.+||.+...|.+.|..+....-..|+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666555555444333333
No 58
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=33.82 E-value=31 Score=21.18 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=21.8
Q ss_pred hhhhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 38 KQQNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 38 ~QQ~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
+-|+++|+.++.-+.+..+...|+...
T Consensus 3 KlQrELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 3 KLQRELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp SSSSHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999998888888888887654
No 59
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=33.64 E-value=12 Score=23.53 Aligned_cols=15 Identities=20% Similarity=0.249 Sum_probs=13.0
Q ss_pred hhhhhHHhHHHHHHH
Q 033431 42 DIEGLESEKESLVKA 56 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~ 56 (119)
..++|||+.++||+.
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 578999999999974
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.58 E-value=64 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=25.0
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
++..|..++++|+.+|..|+.+.-...-+|=+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887776666643
No 61
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=33.35 E-value=1.3e+02 Score=21.24 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHH
Q 033431 5 NKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQ 69 (119)
Q Consensus 5 n~~~~~a~~a~n~n~vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq 69 (119)
.+=+..|.+++..=.==+.-++|+|.+.-=.|++|=. +.+-+-|.+|.+--.+|+.++-.|+|
T Consensus 27 ekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD--~~Il~Ak~aL~evt~~l~Er~~RW~q 89 (101)
T 3teq_A 27 EKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVD--HKILTAKQALSEATAALRERLHRWQQ 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555655554444445678899888777776644 45566678888888899999999987
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.56 E-value=52 Score=22.06 Aligned_cols=8 Identities=50% Similarity=0.663 Sum_probs=3.6
Q ss_pred hhchhhhh
Q 033431 34 LRSVKQQN 41 (119)
Q Consensus 34 ~RS~~QQ~ 41 (119)
+|+++||+
T Consensus 25 VR~LEqqN 32 (93)
T 3s4r_A 25 VRFLEQQN 32 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 63
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.17 E-value=37 Score=23.72 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=21.9
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
.+++.|+++...|.+..+.|...+..|++.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888763
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.92 E-value=82 Score=19.99 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=25.9
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
.+|..|+.+...|..+...|+...=..+++|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999988877777766
No 65
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=31.70 E-value=77 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=28.8
Q ss_pred hhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 033431 44 EGLESEKESLVKANKDLKKRMWDWKQQLYAEA 75 (119)
Q Consensus 44 e~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeA 75 (119)
++|.+..+.|.++++.+.+.+-.+++++....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999987653
No 66
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.66 E-value=73 Score=22.66 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhH
Q 033431 25 LIASFAALTLRSVKQQNDIEGLESEKESLVKANK 58 (119)
Q Consensus 25 l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nk 58 (119)
|+.|.--=-..|-+||.++++|+.|+.-|...-+
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655556788899999999999988876543
No 67
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=29.27 E-value=22 Score=20.04 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=8.3
Q ss_pred CCCCCCccccc
Q 033431 97 PTPPAAGEAAK 107 (119)
Q Consensus 97 p~~~~~g~~~k 107 (119)
|+|+|+|...+
T Consensus 13 PAPKPP~s~t~ 23 (26)
T 2rqw_B 13 PAPKPPSSASA 23 (26)
T ss_dssp CCCCCSSCSCC
T ss_pred CCCCCCCCCcc
Confidence 88898887543
No 68
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.22 E-value=32 Score=19.34 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=11.6
Q ss_pred hhhhhhhHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKA 56 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~ 56 (119)
-+++|+|+++...|++.
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35778888877666653
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.94 E-value=1.2e+02 Score=19.76 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhHH
Q 033431 2 DLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKD 59 (119)
Q Consensus 2 ~~~n~~~~~a~~a~n~n~vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nk~ 59 (119)
++-+||.++=+|.+.-+..|.-+=-.- ..||++|+.|+.+..-|.+.-++
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v--------~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEAL--------ADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556555555555444444321111 24555555555555554444333
No 70
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.94 E-value=23 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=10.5
Q ss_pred hhhhhHHhHHHHHHHhHHHH
Q 033431 42 DIEGLESEKESLVKANKDLK 61 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~ 61 (119)
+|..|+.+...|..++..|+
T Consensus 58 YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554443
No 71
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.60 E-value=47 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=16.4
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKK 62 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~ 62 (119)
+.+|.+|+++...|+.||.-||.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888877766553
No 72
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.55 E-value=63 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
++.+|+....+|..+|..|+..+-....+|
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777766665554
No 73
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.51 E-value=99 Score=20.95 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=22.1
Q ss_pred hhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 43 IEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 43 Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
.+.+...++.|..+|.-|+.---+|...|
T Consensus 43 ~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 43 VQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666678888888888888888765
No 74
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.32 E-value=83 Score=19.32 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=20.0
Q ss_pred hchhhhhhhhhhHHhHHHHHHHhHHHHHH
Q 033431 35 RSVKQQNDIEGLESEKESLVKANKDLKKR 63 (119)
Q Consensus 35 RS~~QQ~~Ie~Leaek~SL~k~Nk~l~~~ 63 (119)
|.-+=+.+..+||+....|..||.-|+.-
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444566777888888888888777654
No 75
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.15 E-value=1.1e+02 Score=23.48 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=21.5
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHH----HHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKR----MWDWKQQLYAE 74 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~----Mw~wKq~Lfae 74 (119)
+.+|++|+.+...+.++-+.+.+. +-.|...+..+
T Consensus 232 ~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 270 (357)
T 3rrk_A 232 KERARLAPEELVGIREEVARLSRESGEALIALWTRAKDE 270 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555 66666655444
No 76
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.65 E-value=80 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=26.6
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQL 71 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~L 71 (119)
+.+++.|+++...|.+..+.|...+..|++.+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999998887754
No 77
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=25.80 E-value=81 Score=22.16 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=25.9
Q ss_pred cchhhHHHHHHHHHHHHhhhchhhhhhhhhhHHh
Q 033431 16 NSNTVVNTCLIASFAALTLRSVKQQNDIEGLESE 49 (119)
Q Consensus 16 n~n~vI~~~l~~sf~~L~~RS~~QQ~~Ie~Leae 49 (119)
....|-++|+- .++|.+|+-+.-++-++||+-
T Consensus 55 egGDvksvClt--LfLlalRa~NeHrqAdELeA~ 86 (96)
T 3gna_A 55 EGGDVKAVCLT--LFLLALRARNEHRQADELEAI 86 (96)
T ss_dssp STTCHHHHHHH--HHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCcHHHHHHH--HHHHHHHccccccchHHHHHH
Confidence 44568888874 678999999999999999874
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.84 E-value=68 Score=22.44 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.3
Q ss_pred hhhhhhhHHhHHHHHHHhHHHHHHH
Q 033431 40 QNDIEGLESEKESLVKANKDLKKRM 64 (119)
Q Consensus 40 Q~~Ie~Leaek~SL~k~Nk~l~~~M 64 (119)
+.+|+.|+.|.+.|+++++.|--.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999998887655
No 79
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=24.76 E-value=64 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHH-HHhhhchhh
Q 033431 18 NTVVNTCLIASFA-ALTLRSVKQ 39 (119)
Q Consensus 18 n~vI~~~l~~sf~-~L~~RS~~Q 39 (119)
+.||+|++++.++ .+-++-.+.
T Consensus 97 ~avInFlIIA~vIYFliVk~iNk 119 (174)
T 2oar_A 97 SAAINFFLIAFAVYFLVVLPYNT 119 (174)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888777 666666554
No 80
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=24.65 E-value=44 Score=27.91 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=35.5
Q ss_pred hhchhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHcCC
Q 033431 34 LRSVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDV 94 (119)
Q Consensus 34 ~RS~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~LfaeAa~ds~~v~asRLr~IyGe~ 94 (119)
+||..+=..+++|. ...-|+.+..++.+.=+.+|.+---....+..-+||+|||+=
T Consensus 216 LRs~~~i~~l~~Ls-----~~~Ins~~~~~vn~a~~~~F~dIVp~ee~~~~hdlRAIYa~I 271 (320)
T 4f43_A 216 LRESGQGKLWHGMS-----IDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEV 271 (320)
T ss_dssp HHTSHHHHHHTTCC-----HHHHHHHHHHHHHHHHHHHTTTTSCTTSCCCTTHHHHHHHHH
T ss_pred HHhcccccccccCC-----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHH
Confidence 46666554455553 233455566677777777887544444445567999999974
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.18 E-value=1.4e+02 Score=20.07 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.3
Q ss_pred chhhhhhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 36 SVKQQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 36 S~~QQ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
..+=+.+.+.|+.|-..|+++...|++-+-.+|+-|..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999888877664
No 82
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.16 E-value=71 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=19.5
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHH---HHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRM---WDWKQ 69 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~M---w~wKq 69 (119)
-|.+=.+=+++|+.+|..|+.|. -.|+.
T Consensus 13 ll~EN~~LreAlkqsNq~mkeR~eeL~~wqe 43 (70)
T 3brv_B 13 CLEENQELRDAIRQSNQILRERCEELLHFQA 43 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556888999999999874 44543
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.87 E-value=82 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=11.7
Q ss_pred hhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 43 IEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 43 Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
|++|+++...|+++...+...+-+.+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 84
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.80 E-value=66 Score=22.08 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=8.3
Q ss_pred hhhhhhhhHHhHHHHHHHh
Q 033431 39 QQNDIEGLESEKESLVKAN 57 (119)
Q Consensus 39 QQ~~Ie~Leaek~SL~k~N 57 (119)
++.+|+.||.+.+..++.-
T Consensus 56 h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 85
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.60 E-value=1.4e+02 Score=18.48 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=26.9
Q ss_pred hhhhhhHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q 033431 41 NDIEGLESEKESLVKANKDLKKRMWDWKQQLYA 73 (119)
Q Consensus 41 ~~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~Lfa 73 (119)
.++.+|+++..+|-+-|..|..++-.=|++|-.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999888888887754
No 86
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.40 E-value=56 Score=23.08 Aligned_cols=35 Identities=9% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcchHHHHHHHHcCCC
Q 033431 58 KDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVP 95 (119)
Q Consensus 58 k~l~~~Mw~wKq~LfaeAa~ds~~v~asRLr~IyGe~~ 95 (119)
..|...+-.|.+.||.+--.|.. +.+|+.+.+|..
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~---f~qL~~L~~~~~ 38 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQ---FLQLQQLQDENN 38 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHH---HHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHhcccccchHHH---HHHHHHhhcCCC
Confidence 45777888999999999999933 889999977654
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.44 E-value=1.2e+02 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=25.1
Q ss_pred hhhhhHHhHHHHHHHhHHHHHHHHHHHHH
Q 033431 42 DIEGLESEKESLVKANKDLKKRMWDWKQQ 70 (119)
Q Consensus 42 ~Ie~Leaek~SL~k~Nk~l~~~Mw~wKq~ 70 (119)
.|..|+.|...|+.+|..|+..+=+.-|.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999988776553
No 88
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.26 E-value=1.2e+02 Score=21.48 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred HHHHHHHhhhchhhhhhhhhhHHhHHHHHHHhHHH
Q 033431 26 IASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60 (119)
Q Consensus 26 ~~sf~~L~~RS~~QQ~~Ie~Leaek~SL~k~Nk~l 60 (119)
+||..+|.---...+.+|++|.++...|+.+-..|
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333344445555555555544444444
No 89
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.08 E-value=78 Score=20.67 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=16.8
Q ss_pred hhHHhHHHHHHHhHHHHHHHHHH
Q 033431 45 GLESEKESLVKANKDLKKRMWDW 67 (119)
Q Consensus 45 ~Leaek~SL~k~Nk~l~~~Mw~w 67 (119)
+|..+-.+|+++|+.|++.+=..
T Consensus 11 alkDev~eLk~e~k~~k~~le~e 33 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEE 33 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888887776543
No 90
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.76 E-value=87 Score=19.56 Aligned_cols=28 Identities=39% Similarity=0.465 Sum_probs=19.5
Q ss_pred hhhHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 033431 44 EGLESEKESLVKANKDLKKRMWDWKQQLY 72 (119)
Q Consensus 44 e~Leaek~SL~k~Nk~l~~~Mw~wKq~Lf 72 (119)
-.||.|..||..+|..|++.--. |.+|.
T Consensus 6 aqlenevaslenenetlkkknlh-kkdli 33 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLH-KKDLI 33 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhccc-HHHHH
Confidence 45788888998888888775433 44444
No 91
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=21.76 E-value=21 Score=25.12 Aligned_cols=23 Identities=26% Similarity=0.751 Sum_probs=15.1
Q ss_pred hHHhHHHHHHHhHHHHHHHHHHHH
Q 033431 46 LESEKESLVKANKDLKKRMWDWKQ 69 (119)
Q Consensus 46 Leaek~SL~k~Nk~l~~~Mw~wKq 69 (119)
|..+-...++.-+.++..|| ||+
T Consensus 73 L~~~S~~F~k~A~kl~rkmw-wkn 95 (119)
T 2kog_A 73 LQAGASQFETSAAKLKRKYW-WKN 95 (119)
T ss_dssp CCSSSHHHHHHHHHHHHHHS-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33344445666678888898 776
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.65 E-value=1.4e+02 Score=23.93 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=6.3
Q ss_pred HhHHHHHHHhHHHHHHH
Q 033431 48 SEKESLVKANKDLKKRM 64 (119)
Q Consensus 48 aek~SL~k~Nk~l~~~M 64 (119)
.|+..+++.-+.+++++
T Consensus 544 ~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHH
Confidence 33333333333333333
No 93
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.30 E-value=77 Score=24.30 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHHHhhhchh-hhhhhhhhHHhHHHHH---HHhHHHHHHHHHHHHHHHHHhhccCCcchH-HHHHHHHcCC
Q 033431 27 ASFAALTLRSVK-QQNDIEGLESEKESLV---KANKDLKKRMWDWKQQLYAEATTESALVPL-ARLKAIYGDV 94 (119)
Q Consensus 27 ~sf~~L~~RS~~-QQ~~Ie~Leaek~SL~---k~Nk~l~~~Mw~wKq~LfaeAa~ds~~v~a-sRLr~IyGe~ 94 (119)
++.|.|.=|=++ ++.+|..||.+..+|. .+|..+..++-.|-.+|+...+.+.-.-.+ .-|+..||=+
T Consensus 64 ~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~ 136 (252)
T 3e98_A 64 GDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVP 136 (252)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 344444444444 4456999999887765 689999999999999998654443322222 4556666654
No 94
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=20.73 E-value=62 Score=20.05 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 033431 57 NKDLKKRMWDWKQQLYAEATT 77 (119)
Q Consensus 57 Nk~l~~~Mw~wKq~LfaeAa~ 77 (119)
+..+-..+|.||.++=.+--.
T Consensus 4 d~~l~~~L~~wR~~~A~~~~v 24 (77)
T 2rhf_A 4 NADLSEALRELRRELMKETGY 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 456788999999998666533
No 95
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=20.10 E-value=49 Score=24.74 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=1.9
Q ss_pred CCCCCCCCccccccc
Q 033431 95 PTPTPPAAGEAAKED 109 (119)
Q Consensus 95 ~~p~~~~~g~~~kee 109 (119)
..|.|.|+|.+.+++
T Consensus 160 ~~P~pgp~~~~~~~~ 174 (183)
T 2lxl_A 160 ETPQAGPVGIEEDND 174 (183)
T ss_dssp CCCC-----------
T ss_pred CCCCCCCCCCccccC
Confidence 345555666555544
Done!