BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033432
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
          Length = 357

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 68  MAITSVCLM--AKAKFSVHSYFDSWNR-----ILLDGFLGGLMSFVLFW 109
           M  T+ CL+   K +  +    DSWNR      LLDGF G   +F   W
Sbjct: 242 MVHTNHCLLQHGKNEKELDPLPDSWNRHQRMEFLLDGFDGTKQAFAQLW 290


>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
          Length = 357

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 68  MAITSVCLM--AKAKFSVHSYFDSWNR-----ILLDGFLGGLMSFVLFW 109
           M  T+ CL+   K +  +    DSWNR      LLDGF G   +F   W
Sbjct: 242 MVHTNHCLLQHGKNEKELDPLPDSWNRHQRMEFLLDGFDGTKQAFAQLW 290


>pdb|1TUE|A Chain A, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|D Chain D, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|F Chain F, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|H Chain H, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|K Chain K, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|M Chain M, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
          Length = 212

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 29  QSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFD 88
            +N    Y+  +F+  I G +   +  T      F+   +  T V ++  A  +  +YFD
Sbjct: 66  PANTGKSYFGMSFIHFIQGAVISFVNSTSH----FWLEPLTDTKVAMLDDATTTCWTYFD 121

Query: 89  SWNRILLDG 97
           ++ R  LDG
Sbjct: 122 TYMRNALDG 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.143    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,672
Number of Sequences: 62578
Number of extensions: 101888
Number of successful extensions: 293
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)