Query 033432
Match_columns 119
No_of_seqs 101 out of 249
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4455 Uncharacterized conser 100.0 6.7E-34 1.5E-38 196.9 9.8 106 14-119 5-110 (110)
2 PF07019 Rab5ip: Rab5-interact 100.0 3.8E-29 8.3E-34 165.9 8.0 81 33-113 1-81 (81)
3 KOG3415 Putative Rab5-interact 99.9 9.5E-25 2.1E-29 153.4 9.3 100 19-118 25-128 (129)
4 PF01102 Glycophorin_A: Glycop 80.3 2.1 4.7E-05 30.5 3.1 14 41-54 66-79 (122)
5 COG5487 Small integral membran 77.0 10 0.00022 23.4 4.9 20 42-61 7-26 (54)
6 PRK13682 hypothetical protein; 75.8 11 0.00024 23.0 4.9 21 41-61 6-26 (51)
7 PF02439 Adeno_E3_CR2: Adenovi 70.0 9.8 0.00021 22.0 3.4 32 40-85 4-35 (38)
8 PF07043 DUF1328: Protein of u 68.4 21 0.00045 20.7 4.7 22 43-64 3-24 (39)
9 PF03613 EIID-AGA: PTS system 60.3 25 0.00054 28.0 5.3 50 23-73 87-147 (264)
10 PLN02953 phosphatidate cytidyl 52.6 30 0.00065 29.5 4.8 24 33-56 95-118 (403)
11 PF12650 DUF3784: Domain of un 52.2 61 0.0013 21.3 5.5 30 19-48 33-62 (97)
12 PF06570 DUF1129: Protein of u 51.6 46 0.001 25.0 5.3 17 60-76 112-128 (206)
13 PRK12872 ubiA prenyltransferas 49.8 1.2E+02 0.0026 23.5 8.1 29 82-111 256-284 (285)
14 PF11085 YqhR: Conserved membr 47.5 61 0.0013 24.6 5.3 37 41-77 25-90 (173)
15 COG4920 Predicted membrane pro 38.2 1.4E+02 0.003 23.7 6.1 76 38-113 12-118 (249)
16 PF10112 Halogen_Hydrol: 5-bro 38.0 1.2E+02 0.0025 22.6 5.6 20 39-58 10-29 (199)
17 COG2177 FtsX Cell division pro 35.8 1.1E+02 0.0024 24.7 5.6 78 33-111 151-235 (297)
18 KOG3195 Uncharacterized membra 35.6 1.1E+02 0.0025 23.8 5.2 59 27-88 116-181 (213)
19 PRK09487 sdhC succinate dehydr 34.7 1.1E+02 0.0024 21.7 4.8 30 85-115 56-85 (129)
20 PF14015 DUF4231: Protein of u 34.7 1.1E+02 0.0025 20.0 4.7 23 33-55 15-37 (112)
21 COG3162 Predicted membrane pro 34.5 1.1E+02 0.0024 21.3 4.5 21 93-113 59-79 (102)
22 PF04418 DUF543: Domain of unk 34.0 89 0.0019 20.4 3.9 21 37-57 30-50 (75)
23 PHA00024 IX minor coat protein 33.1 43 0.00094 18.7 1.9 18 99-116 6-23 (33)
24 PF03419 Peptidase_U4: Sporula 30.5 2E+02 0.0044 22.6 6.2 44 33-76 29-72 (293)
25 PF08510 PIG-P: PIG-P; InterP 30.1 1.5E+02 0.0033 20.7 4.9 59 57-115 4-69 (126)
26 PRK00665 petG cytochrome b6-f 28.9 25 0.00055 20.1 0.5 15 43-57 4-18 (37)
27 PF04070 DUF378: Domain of unk 28.8 67 0.0014 20.3 2.5 27 32-58 1-27 (62)
28 CHL00008 petG cytochrome b6/f 27.7 27 0.00058 20.0 0.5 15 43-57 4-18 (37)
29 PRK11677 hypothetical protein; 27.5 60 0.0013 23.5 2.4 17 37-53 3-19 (134)
30 PF12666 PrgI: PrgI family pro 26.7 1.2E+02 0.0025 19.7 3.6 22 37-58 18-39 (93)
31 PLN03211 ABC transporter G-25; 26.6 4.6E+02 0.01 23.4 8.8 36 34-69 407-449 (659)
32 COG0591 PutP Na+/proline sympo 26.6 1.2E+02 0.0026 25.9 4.5 35 56-91 4-38 (493)
33 PRK12884 ubiA prenyltransferas 26.5 3E+02 0.0066 21.2 7.5 17 91-107 259-275 (279)
34 PF02529 PetG: Cytochrome B6-F 26.4 39 0.00084 19.4 1.0 14 43-56 4-17 (37)
35 TIGR03546 conserved hypothetic 25.2 1.4E+02 0.0031 21.9 4.1 27 39-65 18-44 (154)
36 TIGR03750 conj_TIGR03750 conju 24.6 2.5E+02 0.0055 19.6 5.5 58 37-94 24-89 (111)
37 PF06916 DUF1279: Protein of u 24.4 1.7E+02 0.0037 19.2 4.1 55 57-111 11-73 (91)
38 COG3619 Predicted membrane pro 23.9 2.8E+02 0.006 21.7 5.7 49 23-71 160-208 (226)
39 COG2155 Uncharacterized conser 23.6 77 0.0017 21.1 2.2 26 33-58 4-29 (79)
40 PF01034 Syndecan: Syndecan do 23.1 27 0.0006 22.3 0.0 12 42-53 12-23 (64)
41 PF10112 Halogen_Hydrol: 5-bro 23.1 2.3E+02 0.0049 21.0 5.0 36 38-73 5-41 (199)
42 TIGR02840 spore_YtaF putative 23.0 2.8E+02 0.006 21.0 5.5 37 36-72 135-171 (206)
43 PF13172 PepSY_TM_1: PepSY-ass 22.5 1.3E+02 0.0029 16.0 2.8 26 33-58 3-28 (34)
44 PF09835 DUF2062: Uncharacteri 22.3 1.9E+02 0.004 20.4 4.3 26 40-65 22-47 (154)
45 COG2149 Predicted membrane pro 21.3 2.3E+02 0.0049 20.3 4.3 26 24-49 15-41 (120)
46 TIGR00828 EIID-AGA PTS system, 21.0 3.2E+02 0.0069 21.9 5.7 40 33-73 110-149 (271)
47 PF12483 GIDE: E3 Ubiquitin li 20.3 69 0.0015 22.9 1.6 37 17-54 124-160 (160)
48 PF08802 CytB6-F_Fe-S: Cytochr 20.3 1.2E+02 0.0026 17.4 2.3 26 39-64 9-34 (39)
No 1
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.7e-34 Score=196.91 Aligned_cols=106 Identities=42% Similarity=0.735 Sum_probs=100.3
Q ss_pred ccccccccccChhhhhhhhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhh
Q 033432 14 NDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRI 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~N~~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l 93 (119)
.++....+.++.+++++|.++++++|+.+|+++|++||||||||+.||++|++.+++.+.++..|+++++.+||+++.++
T Consensus 5 ~~~~~~~~~~s~aav~nN~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~ 84 (110)
T KOG4455|consen 5 KAEEVFIPIYSTAAVRNNKKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNL 84 (110)
T ss_pred hhhhcCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHH
Confidence 34455678999999999999999999999999999999999999999999999988888888889999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHhhhcceeeC
Q 033432 94 LLDGFLGGLMSFVLFWTFAYDIVHIF 119 (119)
Q Consensus 94 ~~~g~~~~l~~FvL~Wtl~Y~lvhi~ 119 (119)
+++++++++++|||+||+.|++||+|
T Consensus 85 f~~~f~~Gl~tyVl~Wtf~Y~lv~~~ 110 (110)
T KOG4455|consen 85 FTESFLGGLTTYVLAWTFFYGLVHVY 110 (110)
T ss_pred HHHHHhchHHHHHHHHHHHhhhhccC
Confidence 99999999999999999999999997
No 2
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=99.96 E-value=3.8e-29 Score=165.93 Aligned_cols=81 Identities=46% Similarity=0.911 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhhhhhhhHHHHHHHHhh
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFA 112 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l~~~g~~~~l~~FvL~Wtl~ 112 (119)
|+++|+||++|+++|++||||||||+.||++|++++.+++++++.|.++++++||++++|+++||+++++++|||+||++
T Consensus 1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~ 80 (81)
T PF07019_consen 1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q 033432 113 Y 113 (119)
Q Consensus 113 Y 113 (119)
|
T Consensus 81 Y 81 (81)
T PF07019_consen 81 Y 81 (81)
T ss_pred C
Confidence 8
No 3
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.5e-25 Score=153.43 Aligned_cols=100 Identities=22% Similarity=0.428 Sum_probs=93.1
Q ss_pred cccccChhhhhhhh----hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhh
Q 033432 19 DLQIFNAENLQSNM----KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRIL 94 (119)
Q Consensus 19 ~~~~~~~~~~~~N~----~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~~l~ 94 (119)
-....++++-|..+ |+++|.||+++++.|+++||++|+|..|++.|+..+..+.++|+.+.++.+|+.|++.+|+.
T Consensus 25 ~~kl~~~da~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~ 104 (129)
T KOG3415|consen 25 AAKLTDSDAEWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELL 104 (129)
T ss_pred HHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHH
Confidence 33567777777554 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHhhhcceee
Q 033432 95 LDGFLGGLMSFVLFWTFAYDIVHI 118 (119)
Q Consensus 95 ~~g~~~~l~~FvL~Wtl~Y~lvhi 118 (119)
+||+++++++|++.|+++|++.|.
T Consensus 105 kEGf~asfa~FlvtWIi~Yt~~hy 128 (129)
T KOG3415|consen 105 KEGFMASFALFLVTWIIFYTLAHY 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999994
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.35 E-value=2.1 Score=30.53 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhc
Q 033432 41 FLSIIGGVIAGILG 54 (119)
Q Consensus 41 ~~al~~Gi~aGiLg 54 (119)
+..+++|++|||+|
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 58899999999987
No 5
>COG5487 Small integral membrane protein [Function unknown]
Probab=76.97 E-value=10 Score=23.39 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhcccchHHH
Q 033432 42 LSIIGGVIAGILGFTGLMGF 61 (119)
Q Consensus 42 ~al~~Gi~aGiLgLtg~~Gf 61 (119)
+=++.-++||.+|..|+.|-
T Consensus 7 iFlvialIa~~lGFgGiaga 26 (54)
T COG5487 7 IFLVIALIAGALGFGGIAGA 26 (54)
T ss_pred HHHHHHHHHHHhCcccHHHH
Confidence 34567788999999999874
No 6
>PRK13682 hypothetical protein; Provisional
Probab=75.76 E-value=11 Score=23.05 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhcccchHHH
Q 033432 41 FLSIIGGVIAGILGFTGLMGF 61 (119)
Q Consensus 41 ~~al~~Gi~aGiLgLtg~~Gf 61 (119)
++-++..++||++|.+|+.|-
T Consensus 6 liFliiA~iA~~lGF~GiAg~ 26 (51)
T PRK13682 6 IIFLVIALIAAVLGFGGIAGA 26 (51)
T ss_pred HHHHHHHHHHHHhccchHHHH
Confidence 345678899999999999884
No 7
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=70.02 E-value=9.8 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 033432 40 TFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHS 85 (119)
Q Consensus 40 ~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~ 85 (119)
+..|+++|+++|+ ..+++..++|..+-++++.
T Consensus 4 s~IaIIv~V~vg~--------------~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 4 STIAIIVAVVVGM--------------AIIIICMFYYACCYKKHRR 35 (38)
T ss_pred chhhHHHHHHHHH--------------HHHHHHHHHHHHHHccccc
Confidence 4567777777764 2344455556655444443
No 8
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=68.37 E-value=21 Score=20.66 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=17.6
Q ss_pred HHHHHHHhhhhcccchHHHHHH
Q 033432 43 SIIGGVIAGILGFTGLMGFVFY 64 (119)
Q Consensus 43 al~~Gi~aGiLgLtg~~Gf~~f 64 (119)
-++..++||++|.+|..|-..-
T Consensus 3 FliiAliAg~lGF~Giag~a~~ 24 (39)
T PF07043_consen 3 FLIIALIAGVLGFGGIAGTAAG 24 (39)
T ss_pred hHHHHHHHHHcCcccHHHHHHH
Confidence 3567889999999999886443
No 9
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=60.25 E-value=25 Score=28.05 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=36.9
Q ss_pred cChhhhhhhh-----------hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 033432 23 FNAENLQSNM-----------KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 73 (119)
Q Consensus 23 ~~~~~~~~N~-----------~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~ 73 (119)
+++|.+..=+ |++.| -++.-+.+|+.++.--=-++.|-++|++...+..+
T Consensus 87 ~~~~~I~~iKt~LMGPlAGIGDslf~-~tl~pI~~~i~~~la~~Gn~lGpil~~~~~~~~~~ 147 (264)
T PF03613_consen 87 IDDEAINSIKTALMGPLAGIGDSLFW-GTLRPILASIAASLALQGNILGPILFLLLYNIIHF 147 (264)
T ss_pred CChHHHHHHHHHHHhhhhhcchHHHH-HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 6666665443 88888 56667777788877766788999999988777754
No 10
>PLN02953 phosphatidate cytidylyltransferase
Probab=52.61 E-value=30 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccc
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFT 56 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLt 56 (119)
+.-.+.|.+++++.|..+..+=+.
T Consensus 95 ~~~l~~RIiSglvl~~l~l~vV~~ 118 (403)
T PLN02953 95 ASQLKKRVIFGIGIGLPVGCVVLA 118 (403)
T ss_pred cccHHHHHHHHHHHHHHHHheeee
Confidence 334578888888887666444333
No 11
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=52.21 E-value=61 Score=21.31 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=15.3
Q ss_pred cccccChhhhhhhhhHHHHHHHHHHHHHHH
Q 033432 19 DLQIFNAENLQSNMKVIYYSRTFLSIIGGV 48 (119)
Q Consensus 19 ~~~~~~~~~~~~N~~~l~~~r~~~al~~Gi 48 (119)
|++.+|.+.+.++......+=.+..++.|+
T Consensus 33 Ek~~~D~~~l~r~~g~~~~~~~i~~li~~l 62 (97)
T PF12650_consen 33 EKEKYDKKKLCRFMGKFMLIIGIILLIGGL 62 (97)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655444444444443333
No 12
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=51.64 E-value=46 Score=25.03 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033432 60 GFVFYFLIMAITSVCLM 76 (119)
Q Consensus 60 Gf~~f~~~~~~~s~l~~ 76 (119)
|++.-++.+++...+++
T Consensus 112 gi~tli~~~i~~G~~~~ 128 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFY 128 (206)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77766666655554333
No 13
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=49.79 E-value=1.2e+02 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=16.9
Q ss_pred cccccccchhhhhhhhhhhhhHHHHHHHHh
Q 033432 82 SVHSYFDSWNRILLDGFLGGLMSFVLFWTF 111 (119)
Q Consensus 82 ~~~~yf~~~~~l~~~g~~~~l~~FvL~Wtl 111 (119)
+.++++.. ..+-+.-++.++..|++.|.+
T Consensus 256 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 284 (285)
T PRK12872 256 DKKDLLYL-SLLDKEHMLLGLISMLLGLLV 284 (285)
T ss_pred cccchhHH-HHHhHHHHHHHHHHHHHHHHh
Confidence 34444432 333444567888888887764
No 14
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=47.51 E-value=61 Score=24.57 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhccc-----------------------------chHHHHHHHHHHHHHHHHHHH
Q 033432 41 FLSIIGGVIAGILGFT-----------------------------GLMGFVFYFLIMAITSVCLMA 77 (119)
Q Consensus 41 ~~al~~Gi~aGiLgLt-----------------------------g~~Gf~~f~~~~~~~s~l~~~ 77 (119)
.++...|+.+|.++.= .+.|.+++.+++++.+++|+.
T Consensus 25 ~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~ 90 (173)
T PF11085_consen 25 EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYA 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988631 235778999999999999987
No 15
>COG4920 Predicted membrane protein [Function unknown]
Probab=38.18 E-value=1.4e+02 Score=23.71 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHh----------------------------cCcccccccc
Q 033432 38 SRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKA----------------------------KFSVHSYFDS 89 (119)
Q Consensus 38 ~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~----------------------------~~~~~~yf~~ 89 (119)
+-|.+-++.-.++-++|=+=..-.+.|+++.+.+|...-.+. ..+++++...
T Consensus 12 ~sq~~iilfSlvlsffp~~f~tf~ilyilf~~glsiVm~~RSnp~l~~~~s~~eI~~aR~LyEEK~a~eL~~kDee~l~E 91 (249)
T COG4920 12 ISQLSIILFSLVLSFFPAEFFTFLILYILFFFGLSIVMGLRSNPYLKGVVSAQEISRARPLYEEKEANELLEKDEELLNE 91 (249)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccCHHHHhhcchhHhhhhhHHHHHhhHHHHHH
Confidence 345566677777888887666666677766665665442221 1234444444
Q ss_pred hhhhhhhhh---hhhhHHHHHHHHhhh
Q 033432 90 WNRILLDGF---LGGLMSFVLFWTFAY 113 (119)
Q Consensus 90 ~~~l~~~g~---~~~l~~FvL~Wtl~Y 113 (119)
.++.....+ ..++.-||+.|++..
T Consensus 92 ~~~~~~~~f~~m~~ml~yfIll~~f~~ 118 (249)
T COG4920 92 YKRFARASFMPMLTMLPYFILLATFLF 118 (249)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 444555443 356788999999654
No 16
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=38.01 E-value=1.2e+02 Score=22.58 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhcccch
Q 033432 39 RTFLSIIGGVIAGILGFTGL 58 (119)
Q Consensus 39 r~~~al~~Gi~aGiLgLtg~ 58 (119)
|.+++++++++++++..-+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGF 29 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55566655555555555433
No 17
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=35.84 E-value=1.1e+02 Score=24.75 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhc-------CcccccccchhhhhhhhhhhhhHHH
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK-------FSVHSYFDSWNRILLDGFLGGLMSF 105 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~~k~~-------~~~~~yf~~~~~l~~~g~~~~l~~F 105 (119)
+--.|++.+.++.-++...-+++.-+..++..+++..-+=...+.+.+ -..++-|. .+....||..-|+.+.
T Consensus 151 ~~~~wv~rL~ai~~~~~~v~~~~~~ll~~~~vllI~NtiR~~i~sRr~eIeVmklvGAt~~fI-~~PFl~~g~~~gl~Ga 229 (297)
T COG2177 151 DDREWVDRLFAILRLVRTVGIGLSILLALAAVLLIGNTIRLAIFSRRREIEVMKLVGATDSFI-RRPFLYEGMLIGLLGA 229 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccchHHH-HhHHHHHHHHHHHHHH
Confidence 345788888888888888777777777777777666666665554221 01122232 4678889999999999
Q ss_pred HHHHHh
Q 033432 106 VLFWTF 111 (119)
Q Consensus 106 vL~Wtl 111 (119)
++.|.+
T Consensus 230 ~~~~~l 235 (297)
T COG2177 230 LIALAL 235 (297)
T ss_pred HHHHHH
Confidence 999887
No 18
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=35.61 E-value=1.1e+02 Score=23.77 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=36.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHhcCccccccc
Q 033432 27 NLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCL-------MAKAKFSVHSYFD 88 (119)
Q Consensus 27 ~~~~N~~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~-------~~k~~~~~~~yf~ 88 (119)
++.++.+.++|.--+.+ -+++||+++..+.+|=+.-+...++...+ |.||.+++++-+.
T Consensus 116 ~~n~~dsriFWlgL~~~---pv~W~if~v~al~~fk~~wL~lv~vg~~l~~aN~~Gy~rC~~~a~~~~~ 181 (213)
T KOG3195|consen 116 NVNAIDSRIFWLGLYLC---PVIWIIFAVFALFRFKFKWLILVVVGIALNSANLYGYSRCDKDAKKKFQ 181 (213)
T ss_pred cchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeecCCccchhHH
Confidence 45666789999766554 45788888888888855544333333222 2367666655544
No 19
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=34.71 E-value=1.1e+02 Score=21.68 Aligned_cols=30 Identities=17% Similarity=0.422 Sum_probs=18.3
Q ss_pred ccccchhhhhhhhhhhhhHHHHHHHHhhhcc
Q 033432 85 SYFDSWNRILLDGFLGGLMSFVLFWTFAYDI 115 (119)
Q Consensus 85 ~yf~~~~~l~~~g~~~~l~~FvL~Wtl~Y~l 115 (119)
+.|....+ +.++...-+..|.+.|.++|=+
T Consensus 56 ~~f~~~~~-~~~~~~~k~~~~~~~~al~yH~ 85 (129)
T PRK09487 56 EGFEQAAA-IMDSFFVKFIMWGILTALAYHV 85 (129)
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence 34443333 3455566677788888888743
No 20
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.69 E-value=1.1e+02 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcc
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGF 55 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgL 55 (119)
+..++.-+...++.++.++++|+
T Consensus 15 q~~~~~~~~~~i~~~~~~a~i~~ 37 (112)
T PF14015_consen 15 QRRYRRLRIASIILSVLGAVIPV 37 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666776666555654
No 21
>COG3162 Predicted membrane protein [Function unknown]
Probab=34.48 E-value=1.1e+02 Score=21.30 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.2
Q ss_pred hhhhhhhhhhHHHHHHHHhhh
Q 033432 93 ILLDGFLGGLMSFVLFWTFAY 113 (119)
Q Consensus 93 l~~~g~~~~l~~FvL~Wtl~Y 113 (119)
..+-|+.-++..|++.|++.+
T Consensus 59 ~Vt~Gip~gvg~fv~tfVlt~ 79 (102)
T COG3162 59 SVTRGIPFGVGVFVMTFVLTG 79 (102)
T ss_pred ceehhHhHHHHHHHHHHHHHH
Confidence 466788888999999998875
No 22
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=33.98 E-value=89 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 033432 37 YSRTFLSIIGGVIAGILGFTG 57 (119)
Q Consensus 37 ~~r~~~al~~Gi~aGiLgLtg 57 (119)
-.|+..++++|+++++|=+..
T Consensus 30 l~k~~~G~~~G~~~s~l~frr 50 (75)
T PF04418_consen 30 LVKTGLGFGIGVVFSLLFFRR 50 (75)
T ss_pred HHHHhhhhhHHHHHHHHHHcc
Confidence 356777888888877766555
No 23
>PHA00024 IX minor coat protein
Probab=33.07 E-value=43 Score=18.69 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHhhhcce
Q 033432 99 LGGLMSFVLFWTFAYDIV 116 (119)
Q Consensus 99 ~~~l~~FvL~Wtl~Y~lv 116 (119)
..-+..|+|-|++.|++.
T Consensus 6 ~~ffgA~ilG~~l~~~Il 23 (33)
T PHA00024 6 GYFFGAYILGWALFYGIL 23 (33)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345678999999998763
No 24
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=30.53 E-value=2e+02 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLM 76 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~l~~ 76 (119)
....+.|-+.+..+|.....+-+..-.+++..++.-++++.+..
T Consensus 29 ~~~~~~Rll~~A~~Gal~~~~~~~p~~~~~~~~~~k~l~s~lmv 72 (293)
T PF03419_consen 29 RRASRWRLLLGAAIGALYSLLIFFPPLSFLYSILFKLLISVLMV 72 (293)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 34678889999999988887777776777766666666665443
No 25
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=30.14 E-value=1.5e+02 Score=20.66 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHHHH-HHh-----cCcccccccc-hhhhhhhhhhhhhHHHHHHHHhhhcc
Q 033432 57 GLMGFVFYFLIMAITSVCLM-AKA-----KFSVHSYFDS-WNRILLDGFLGGLMSFVLFWTFAYDI 115 (119)
Q Consensus 57 g~~Gf~~f~~~~~~~s~l~~-~k~-----~~~~~~yf~~-~~~l~~~g~~~~l~~FvL~Wtl~Y~l 115 (119)
.+.||+.|+++.++..+.+. +.. +.---.|+++ .|.+.....+--.+.|...--..||+
T Consensus 4 e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~ 69 (126)
T PF08510_consen 4 EYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNL 69 (126)
T ss_pred eeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999888777665332 211 1112267774 34666666444444444444444443
No 26
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=28.89 E-value=25 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhcccc
Q 033432 43 SIIGGVIAGILGFTG 57 (119)
Q Consensus 43 al~~Gi~aGiLgLtg 57 (119)
.+++|++-|.++.|-
T Consensus 4 plL~GiVLGlipiTl 18 (37)
T PRK00665 4 PLLCGIVLGLIPVTL 18 (37)
T ss_pred hhhhhHHHHhHHHHH
Confidence 467899998888773
No 27
>PF04070 DUF378: Domain of unknown function (DUF378); InterPro: IPR007211 These are predicted membrane proteins of unknown function. The majority of the proteins have two predicted transmembrane regions.
Probab=28.78 E-value=67 Score=20.35 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccch
Q 033432 32 MKVIYYSRTFLSIIGGVIAGILGFTGL 58 (119)
Q Consensus 32 ~~~l~~~r~~~al~~Gi~aGiLgLtg~ 58 (119)
++.+.|+--+..++.|+=||++|+-++
T Consensus 1 Mk~ld~ialiLvIIGalNWGliGlf~~ 27 (62)
T PF04070_consen 1 MKILDKIALILVIIGALNWGLIGLFNF 27 (62)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367888889999999999999998654
No 28
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.73 E-value=27 Score=19.97 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.7
Q ss_pred HHHHHHHhhhhcccc
Q 033432 43 SIIGGVIAGILGFTG 57 (119)
Q Consensus 43 al~~Gi~aGiLgLtg 57 (119)
.+++|++-|.++.|-
T Consensus 4 ~lL~GiVLGlipvTl 18 (37)
T CHL00008 4 VLLFGIVLGLIPITL 18 (37)
T ss_pred hhhhhHHHHhHHHHH
Confidence 467899998888773
No 29
>PRK11677 hypothetical protein; Provisional
Probab=27.46 E-value=60 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhh
Q 033432 37 YSRTFLSIIGGVIAGIL 53 (119)
Q Consensus 37 ~~r~~~al~~Gi~aGiL 53 (119)
|+--++++++|++.|.+
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66667777777777654
No 30
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=26.74 E-value=1.2e+02 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhcccch
Q 033432 37 YSRTFLSIIGGVIAGILGFTGL 58 (119)
Q Consensus 37 ~~r~~~al~~Gi~aGiLgLtg~ 58 (119)
..||+..++.|+..|+.-.-..
T Consensus 18 T~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 18 TLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999888876544333
No 31
>PLN03211 ABC transporter G-25; Provisional
Probab=26.61 E-value=4.6e+02 Score=23.38 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhc-------ccchHHHHHHHHHHH
Q 033432 34 VIYYSRTFLSIIGGVIAGILG-------FTGLMGFVFYFLIMA 69 (119)
Q Consensus 34 ~l~~~r~~~al~~Gi~aGiLg-------Ltg~~Gf~~f~~~~~ 69 (119)
.+.+.|.+.+++.|++.|.+= +.+..|++||.+...
T Consensus 407 ~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~ 449 (659)
T PLN03211 407 SFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFW 449 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 345788888999999988763 345678888875543
No 32
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=26.59 E-value=1.2e+02 Score=25.90 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=23.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCcccccccchh
Q 033432 56 TGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWN 91 (119)
Q Consensus 56 tg~~Gf~~f~~~~~~~s~l~~~k~~~~~~~yf~~~~ 91 (119)
..+.-|+.|++..+.+......|.+ +.|||+.+.+
T Consensus 4 ~~~ii~~iyli~~~~ig~~a~~~~~-~~~dy~~~gR 38 (493)
T COG0591 4 ILLIIFLIYLILMLLIGLYAYRKTK-SLEDYFLGGR 38 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccC-chHHHhccCC
Confidence 4456677787777777766554444 7888887543
No 33
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=26.54 E-value=3e+02 Score=21.21 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=8.5
Q ss_pred hhhhhhhhhhhhHHHHH
Q 033432 91 NRILLDGFLGGLMSFVL 107 (119)
Q Consensus 91 ~~l~~~g~~~~l~~FvL 107 (119)
++...-+++-++..|++
T Consensus 259 ~~~~~~~~~~~~~~~~~ 275 (279)
T PRK12884 259 RKITLTAMLLALVAFAL 275 (279)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555543
No 34
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=26.40 E-value=39 Score=19.35 Aligned_cols=14 Identities=21% Similarity=0.743 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhccc
Q 033432 43 SIIGGVIAGILGFT 56 (119)
Q Consensus 43 al~~Gi~aGiLgLt 56 (119)
.+++|++-|.++.|
T Consensus 4 plL~GiVlGli~vt 17 (37)
T PF02529_consen 4 PLLSGIVLGLIPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHH
Confidence 46788888888766
No 35
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=25.23 E-value=1.4e+02 Score=21.92 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHHH
Q 033432 39 RTFLSIIGGVIAGILGFTGLMGFVFYF 65 (119)
Q Consensus 39 r~~~al~~Gi~aGiLgLtg~~Gf~~f~ 65 (119)
|...++.+|+..|++|+-|+.-++..+
T Consensus 18 ~iA~g~a~Gvf~g~~P~~glh~~~~~~ 44 (154)
T TIGR03546 18 QLALAVALGMILGLTPFLNLHNIALLF 44 (154)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 345788999999999988876654433
No 36
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.60 E-value=2.5e+02 Score=19.63 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhh--cccc-h----HHHHHHHHHHHHHHHHHHH-HhcCcccccccchhhhh
Q 033432 37 YSRTFLSIIGGVIAGIL--GFTG-L----MGFVFYFLIMAITSVCLMA-KAKFSVHSYFDSWNRIL 94 (119)
Q Consensus 37 ~~r~~~al~~Gi~aGiL--gLtg-~----~Gf~~f~~~~~~~s~l~~~-k~~~~~~~yf~~~~~l~ 94 (119)
|+=-..+..+|+..|++ -+++ + .|++.-.+..+.+.--+.. .+.++||.|+.-.-+.+
T Consensus 24 ~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~~~ 89 (111)
T TIGR03750 24 GVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRKLEWK 89 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHHHH
Confidence 34445667777777755 2233 1 1222222223333333333 35678998886433433
No 37
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=24.36 E-value=1.7e+02 Score=19.21 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH--HhcCcccccccc---h---hhhhhhhhhhhhHHHHHHHHh
Q 033432 57 GLMGFVFYFLIMAITSVCLMA--KAKFSVHSYFDS---W---NRILLDGFLGGLMSFVLFWTF 111 (119)
Q Consensus 57 g~~Gf~~f~~~~~~~s~l~~~--k~~~~~~~yf~~---~---~~l~~~g~~~~l~~FvL~Wtl 111 (119)
|..|..+|+..+++.-..+|. +.+-+....... . .+...+..-+...+|++.|+.
T Consensus 11 G~~~l~vy~~~s~~~~~~~y~~v~~GvDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lAy~~ 73 (91)
T PF06916_consen 11 GYVALGVYLGLSFISLGSCYLAVSSGVDVIALLESLGISVGWESKVEKKKNSSAGTFALAYAI 73 (91)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhhhhhhcccccHHHHHHHHHH
Confidence 567778888777666544443 443333322221 1 111222223567888888874
No 38
>COG3619 Predicted membrane protein [Function unknown]
Probab=23.85 E-value=2.8e+02 Score=21.70 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=31.6
Q ss_pred cChhhhhhhhhHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 033432 23 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAIT 71 (119)
Q Consensus 23 ~~~~~~~~N~~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~ 71 (119)
+.+++-+++.+.+.+.--+.+.++|.++|.+.=.=+.+.........++
T Consensus 160 l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i~ 208 (226)
T COG3619 160 LSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALIL 208 (226)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344445555677777778889999999988655555555554444433
No 39
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=77 Score=21.07 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccch
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGL 58 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~ 58 (119)
+.+.-+-.++.++.|+=||++|++++
T Consensus 4 ~~i~~~sllLvIiGalNWGLvG~f~f 29 (79)
T COG2155 4 KIIRGLSLLLVILGALNWGLVGLFGF 29 (79)
T ss_pred hHHHHHHHHHHHHhhhhhceeeeehh
Confidence 44556667788889999999999986
No 40
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=23.13 E-value=27 Score=22.30 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhh
Q 033432 42 LSIIGGVIAGIL 53 (119)
Q Consensus 42 ~al~~Gi~aGiL 53 (119)
.++++|+++|++
T Consensus 12 aavIaG~Vvgll 23 (64)
T PF01034_consen 12 AAVIAGGVVGLL 23 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 41
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=23.12 E-value=2.3e+02 Score=20.96 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=25.0
Q ss_pred HHHHHHHHHH-HHhhhhcccchHHHHHHHHHHHHHHH
Q 033432 38 SRTFLSIIGG-VIAGILGFTGLMGFVFYFLIMAITSV 73 (119)
Q Consensus 38 ~r~~~al~~G-i~aGiLgLtg~~Gf~~f~~~~~~~s~ 73 (119)
.|.+.-.++| .++++.++..+.|+-..+..+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 41 (199)
T PF10112_consen 5 IRFIFRWILGVLIAAITFLVSFFGFDHSFLLSLLIGA 41 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555 56666778888888888887777765
No 42
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=22.96 E-value=2.8e+02 Score=20.99 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 033432 36 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITS 72 (119)
Q Consensus 36 ~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s 72 (119)
----++=++.+|+.+|++|..-+.-.++-.+++++.+
T Consensus 135 ~iAlSiDalavG~s~~~~g~~~~~~~~~igivs~i~~ 171 (206)
T TIGR02840 135 GIALSLDAFGAGIGASLLGLNPLATSILVAVMSFIFV 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3344566788999999999976655444444444444
No 43
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=22.55 E-value=1.3e+02 Score=16.02 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccch
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGL 58 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~ 58 (119)
+...+++-..++++++..=++.+||.
T Consensus 3 ~~~~~~H~~~g~~~~~~ll~~~lTG~ 28 (34)
T PF13172_consen 3 KFWRKIHRWLGLIAAIFLLLLALTGA 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666666654
No 44
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=22.34 E-value=1.9e+02 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhcccchHHHHHHH
Q 033432 40 TFLSIIGGVIAGILGFTGLMGFVFYF 65 (119)
Q Consensus 40 ~~~al~~Gi~aGiLgLtg~~Gf~~f~ 65 (119)
--.++..|+..|++|.=|++-++..+
T Consensus 22 iA~g~AiG~fig~~P~~g~~~~l~~~ 47 (154)
T PF09835_consen 22 IALGFAIGVFIGFLPIFGLQTVLAIA 47 (154)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 45688899999999997776554443
No 45
>COG2149 Predicted membrane protein [Function unknown]
Probab=21.27 E-value=2.3e+02 Score=20.30 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=18.8
Q ss_pred Chhhhhhhh-hHHHHHHHHHHHHHHHH
Q 033432 24 NAENLQSNM-KVIYYSRTFLSIIGGVI 49 (119)
Q Consensus 24 ~~~~~~~N~-~~l~~~r~~~al~~Gi~ 49 (119)
|+..-.-|. .-+-|+|+.++++++-+
T Consensus 15 d~R~~lAnERTFLAWiRTsLallafGv 41 (120)
T COG2149 15 DYRFTLANERTFLAWIRTSLALLAFGV 41 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555 56899999999987654
No 46
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=21.00 E-value=3.2e+02 Score=21.94 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 73 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~s~ 73 (119)
|.+.|. ++.-+++|+.++.-.=-++.|-++|++...+..+
T Consensus 110 DSlf~g-t~~pI~~~Ia~~lA~~Gn~lGpil~~v~~~~~~~ 149 (271)
T TIGR00828 110 DPIFWG-TLRPIMAALGASLALSGNLLGPLLFFFLFNLVRL 149 (271)
T ss_pred hHHHHH-HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 777764 4555666666666555568998888877666654
No 47
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=20.30 E-value=69 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=25.1
Q ss_pred cccccccChhhhhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 033432 17 SNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILG 54 (119)
Q Consensus 17 ~~~~~~~~~~~~~~N~~~l~~~r~~~al~~Gi~aGiLg 54 (119)
..-+...+.+.+....+.-.+.-...++++|++ |+||
T Consensus 124 ~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~-~v~~ 160 (160)
T PF12483_consen 124 PFFISTKSEEELIRSLRSSARWWKWLAIALGVV-GVLG 160 (160)
T ss_pred cEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE-EEeC
Confidence 344566677777777766555556777777777 7765
No 48
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=20.30 E-value=1.2e+02 Score=17.44 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHH
Q 033432 39 RTFLSIIGGVIAGILGFTGLMGFVFY 64 (119)
Q Consensus 39 r~~~al~~Gi~aGiLgLtg~~Gf~~f 64 (119)
||++-.+.|-+.+..-..-+...+-|
T Consensus 9 R~lmN~ll~Gava~~a~~~lyP~~~f 34 (39)
T PF08802_consen 9 RQLMNLLLGGAVAVPAGGMLYPYVKF 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhhhheeE
Confidence 56666655544444333333444433
Done!