Query 033432
Match_columns 119
No_of_seqs 101 out of 249
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 40.7 20 0.00069 20.3 2.3 13 42-54 10-22 (44)
2 1afo_A Glycophorin A; integral 40.1 15 0.00052 20.5 1.7 14 41-54 12-25 (40)
3 1q90_G Cytochrome B6F complex 32.8 16 0.00056 20.1 1.0 14 43-56 4-17 (37)
4 2ks1_B Epidermal growth factor 31.5 12 0.00042 21.2 0.4 12 43-54 12-23 (44)
5 2l34_A TYRO protein tyrosine k 23.2 65 0.0022 17.0 2.3 23 43-65 7-29 (33)
6 1vf5_G Protein PET G; photosyn 19.6 19 0.00063 19.8 -0.4 14 43-56 4-17 (37)
7 2e8o_A SAM domain and HD domai 18.0 1.6E+02 0.0056 18.6 4.0 20 22-41 23-42 (103)
8 3arc_J Photosystem II reaction 16.7 70 0.0024 17.8 1.6 18 46-64 13-30 (40)
9 2k9j_B Integrin beta-3; transm 15.7 1.6E+02 0.0055 16.1 4.7 13 41-53 9-21 (43)
10 3e1r_A Centrosomal protein of 15.6 1.7E+02 0.0058 17.4 3.2 36 21-56 12-47 (58)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.70 E-value=20 Score=20.34 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhhc
Q 033432 42 LSIIGGVIAGILG 54 (119)
Q Consensus 42 ~al~~Gi~aGiLg 54 (119)
.++..|++.|++.
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 4566666666654
No 2
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=40.11 E-value=15 Score=20.52 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhc
Q 033432 41 FLSIIGGVIAGILG 54 (119)
Q Consensus 41 ~~al~~Gi~aGiLg 54 (119)
++.++.|+.||++|
T Consensus 12 i~lII~~vmaGiIG 25 (40)
T 1afo_A 12 ITLIIFGVMAGVIG 25 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56788899998876
No 3
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=32.81 E-value=16 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhccc
Q 033432 43 SIIGGVIAGILGFT 56 (119)
Q Consensus 43 al~~Gi~aGiLgLt 56 (119)
.+++|++-|.++.|
T Consensus 4 ~lL~GIVlGlipvt 17 (37)
T 1q90_G 4 PLLCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888888776
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.51 E-value=12 Score=21.19 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhc
Q 033432 43 SIIGGVIAGILG 54 (119)
Q Consensus 43 al~~Gi~aGiLg 54 (119)
++.+|++.|++.
T Consensus 12 ~IA~gVVgGv~~ 23 (44)
T 2ks1_B 12 SIATGMVGALLL 23 (44)
T ss_dssp SSTHHHHHHHHH
T ss_pred eEEeehhHHHHH
Confidence 445556555543
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=23.16 E-value=65 Score=16.97 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhcccchHHHHHHH
Q 033432 43 SIIGGVIAGILGFTGLMGFVFYF 65 (119)
Q Consensus 43 al~~Gi~aGiLgLtg~~Gf~~f~ 65 (119)
..++|++-|-+-.|.+-+.+.|+
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhh
Confidence 34667776666666666665554
No 6
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=19.55 E-value=19 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.0
Q ss_pred HHHHHHHhhhhccc
Q 033432 43 SIIGGVIAGILGFT 56 (119)
Q Consensus 43 al~~Gi~aGiLgLt 56 (119)
.+++||+-|.++.|
T Consensus 4 plL~GIVlGlipvt 17 (37)
T 1vf5_G 4 PLLDGLVLGLVFAT 17 (37)
T ss_dssp -----CHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888887765
No 7
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.02 E-value=1.6e+02 Score=18.61 Aligned_cols=20 Identities=10% Similarity=-0.042 Sum_probs=15.3
Q ss_pred ccChhhhhhhhhHHHHHHHH
Q 033432 22 IFNAENLQSNMKVIYYSRTF 41 (119)
Q Consensus 22 ~~~~~~~~~N~~~l~~~r~~ 41 (119)
.-.+..-|...+|..|++++
T Consensus 23 ~~~~v~~Ws~~~V~~WL~~l 42 (103)
T 2e8o_A 23 LHPDYKTWGPEQVCSFLRRG 42 (103)
T ss_dssp CCSCGGGCHHHHHHHHHHHH
T ss_pred cccChhhCCHHHHHHHHHHc
Confidence 34556678888999999975
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=16.65 E-value=70 Score=17.76 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=8.8
Q ss_pred HHHHhhhhcccchHHHHHH
Q 033432 46 GGVIAGILGFTGLMGFVFY 64 (119)
Q Consensus 46 ~Gi~aGiLgLtg~~Gf~~f 64 (119)
.|.++|+. .-++.|+.||
T Consensus 13 vgtv~G~~-vi~~~giFfy 30 (40)
T 3arc_J 13 VATVAGMG-VIVIVGLFFY 30 (40)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred eeeehhhh-hhheeeEEEe
Confidence 45555532 2445555555
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=15.73 E-value=1.6e+02 Score=16.13 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhh
Q 033432 41 FLSIIGGVIAGIL 53 (119)
Q Consensus 41 ~~al~~Gi~aGiL 53 (119)
+.+++.|+++|++
T Consensus 9 ~~~Iv~gvi~~iv 21 (43)
T 2k9j_B 9 ILVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHH
Confidence 4567777777765
No 10
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=15.61 E-value=1.7e+02 Score=17.42 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=29.8
Q ss_pred cccChhhhhhhhhHHHHHHHHHHHHHHHHhhhhccc
Q 033432 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFT 56 (119)
Q Consensus 21 ~~~~~~~~~~N~~~l~~~r~~~al~~Gi~aGiLgLt 56 (119)
+.--.|+..+|..=+-|-+|=-+-+=|+.++|+-|+
T Consensus 12 e~qLkDaleknqqWlvydqqReayV~gll~~i~ele 47 (58)
T 3e1r_A 12 EIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELE 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444567889999888999999999999999998765
Done!