Query 033432
Match_columns 119
No_of_seqs 101 out of 249
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 23:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033432.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033432hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 45.4 21 0.0015 22.3 5.1 20 95-114 65-84 (129)
2 d1q90g_ f.23.26.1 (G:) PetG su 45.0 3.9 0.00028 20.1 1.0 15 43-57 4-18 (30)
3 d1vf5c3 f.23.23.1 (C:250-286) 31.7 31 0.0023 17.6 3.6 22 58-79 6-27 (37)
4 d1q90a3 f.23.23.1 (A:248-292) 31.0 23 0.0017 18.8 2.9 22 58-79 5-26 (45)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 28.5 17 0.0012 17.7 1.8 14 40-53 10-23 (32)
6 d1rh1a2 f.1.1.1 (A:313-511) Co 16.9 59 0.0043 22.3 3.5 26 41-66 151-177 (199)
7 d1rh5b_ f.23.28.1 (B:) Preprot 16.6 86 0.0063 17.1 4.8 34 33-71 19-52 (56)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 10.0 72 0.0053 15.7 1.6 18 46-64 7-24 (34)
9 d1n93x_ a.206.1.1 (X:) P40 nuc 8.5 1.1E+02 0.0077 22.2 2.7 31 22-52 91-124 (343)
10 d1cola_ f.1.1.1 (A:) Colicin A 8.1 2.7E+02 0.02 18.7 4.7 14 57-70 166-179 (197)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=45.35 E-value=21 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=14.3
Q ss_pred hhhhhhhhHHHHHHHHhhhc
Q 033432 95 LDGFLGGLMSFVLFWTFAYD 114 (119)
Q Consensus 95 ~~g~~~~l~~FvL~Wtl~Y~ 114 (119)
.+.....+..|.+.|.++|=
T Consensus 65 ~~~~~~~~~~~~~~~~~~yH 84 (129)
T d1nekc_ 65 MGSFFVKFIMWGILTALAYH 84 (129)
T ss_dssp TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888773
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=45.00 E-value=3.9 Score=20.15 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhcccc
Q 033432 43 SIIGGVIAGILGFTG 57 (119)
Q Consensus 43 al~~Gi~aGiLgLtg 57 (119)
.+++|++-|+++.|-
T Consensus 4 ~ll~GivlGlipiTl 18 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTI 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHH
Confidence 468899999998873
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.71 E-value=31 Score=17.56 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 033432 58 LMGFVFYFLIMAITSVCLMAKA 79 (119)
Q Consensus 58 ~~Gf~~f~~~~~~~s~l~~~k~ 79 (119)
+.|.+.|++..++.-.+++.|.
T Consensus 6 v~gl~~F~~~v~laQi~lVlKK 27 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILKK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888777666666665544
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=30.97 E-value=23 Score=18.81 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 033432 58 LMGFVFYFLIMAITSVCLMAKA 79 (119)
Q Consensus 58 ~~Gf~~f~~~~~~~s~l~~~k~ 79 (119)
+.|.++|++..++.-.+++.|.
T Consensus 5 v~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888777655555555543
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.51 E-value=17 Score=17.68 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhh
Q 033432 40 TFLSIIGGVIAGIL 53 (119)
Q Consensus 40 ~~~al~~Gi~aGiL 53 (119)
..+++..|++.||+
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 45788888888864
No 6
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.89 E-value=59 Score=22.30 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhccc-chHHHHHHHH
Q 033432 41 FLSIIGGVIAGILGFT-GLMGFVFYFL 66 (119)
Q Consensus 41 ~~al~~Gi~aGiLgLt-g~~Gf~~f~~ 66 (119)
..|.+.|...|++|+. ...|++..++
T Consensus 151 ~fs~~~g~~~~~~g~~~t~vgi~giii 177 (199)
T d1rh1a2 151 LFSLTLGSALIAFGLSATVVGFVGVVI 177 (199)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHH
Confidence 3556667777777776 3445544333
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=16.60 E-value=86 Score=17.13 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 033432 33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAIT 71 (119)
Q Consensus 33 ~~l~~~r~~~al~~Gi~aGiLgLtg~~Gf~~f~~~~~~~ 71 (119)
+.=++.+...+..+|+. +-|+-||+.|++...+-
T Consensus 19 ~~~Ef~~ia~v~~iG~~-----i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 19 TKDEYLAVAKVTALGIS-----LLGIIGYIIHVPATYIK 52 (56)
T ss_dssp CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 33455666655555554 35666777776655543
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.02 E-value=72 Score=15.71 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=7.5
Q ss_pred HHHHhhhhcccchHHHHHH
Q 033432 46 GGVIAGILGFTGLMGFVFY 64 (119)
Q Consensus 46 ~Gi~aGiLgLtg~~Gf~~f 64 (119)
.|.++|+.- -++.|..||
T Consensus 7 v~tv~G~~v-i~~vG~FfY 24 (34)
T d2axtj1 7 VATVAGMGV-IVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHH-HHHHHHHHH
T ss_pred eeehhhhhh-Hhheeeeee
Confidence 444555432 233444444
No 9
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]}
Probab=8.51 E-value=1.1e+02 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=19.9
Q ss_pred ccChhhhhhhh---hHHHHHHHHHHHHHHHHhhh
Q 033432 22 IFNAENLQSNM---KVIYYSRTFLSIIGGVIAGI 52 (119)
Q Consensus 22 ~~~~~~~~~N~---~~l~~~r~~~al~~Gi~aGi 52 (119)
.+.......|. +...-+|....++.|+++|-
T Consensus 91 f~g~k~~~~~ft~Le~sSil~hCCdLLIGi~igS 124 (343)
T d1n93x_ 91 FYGEKTTQRDLTELEISSIFSHCCSLLIGVVIGS 124 (343)
T ss_dssp CSCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCccCCCcchHHHHHHHHHHHHHHHHHhhhccc
Confidence 33334444454 44556778889999998874
No 10
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=8.13 E-value=2.7e+02 Score=18.67 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=7.1
Q ss_pred chHHHHHHHHHHHH
Q 033432 57 GLMGFVFYFLIMAI 70 (119)
Q Consensus 57 g~~Gf~~f~~~~~~ 70 (119)
+..|++.|++..++
T Consensus 166 ~~iGI~g~li~~~v 179 (197)
T d1cola_ 166 IAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34666666433333
Done!