RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033433
(119 letters)
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 119 bits (299), Expect = 1e-36
Identities = 60/75 (80%), Positives = 65/75 (86%)
Query: 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
MLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALRRAKFKFPG
Sbjct: 63 MLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPG 122
Query: 61 RQKIIVSRKWGFTKF 75
RQKI +S+KWGFTKF
Sbjct: 123 RQKIHISKKWGFTKF 137
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 90.7 bits (225), Expect = 5e-25
Identities = 28/64 (43%), Positives = 36/64 (56%)
Query: 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
+ AGADR+ GMR AFGK GT ARV G+ L + C ++ H +EA RRA K
Sbjct: 100 QATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITP 159
Query: 61 RQKI 64
+I
Sbjct: 160 SCRI 163
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 87.2 bits (216), Expect = 1e-23
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 1 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPG 60
+ A A GMR FGKP GT ARV + + +EA RRAK K
Sbjct: 98 AAAAAAAAAAADGMRAPFGKPVGTAARVHGANHIFIAWVN--PDPNVEEAWRRAKMKVTP 155
Query: 61 RQKIIVS 67
I S
Sbjct: 156 TINIDSS 162
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 39.0 bits (91), Expect = 2e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 9 RLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 66
L M G + A + G+VL + A+EA + A K P + +
Sbjct: 75 PLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEEL--AREAFKLAAAKLPIKTTFVT 130
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 31.7 bits (72), Expect = 0.009
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 9 RLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 66
L+ M G +G A V G+V+ V A EALR A K P + KI+
Sbjct: 73 PLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQ--AMEALRIAGHKLPIKTKIVR 128
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 346
Score = 27.0 bits (59), Expect = 0.63
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 68 RKWGFTKFSRADYLRWKS 85
R++GF R
Sbjct: 35 REFGFDHSGEGPSDRKNQ 52
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 26.3 bits (57), Expect = 0.94
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 48 QEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL-RWKSENRIVPDGVNAKLL 99
E L R FPG Q + R+ + DY K+ DG+ L
Sbjct: 30 AELLGRRNTGFPGSQPVSFERRHLEETLMQKDYFVCEKT------DGLRCLLF 76
>d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 25.4 bits (55), Expect = 1.5
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 10/89 (11%)
Query: 21 PQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAK-------FKFPGRQKIIVSRKWGFT 73
P + V + + K +H + I +K GF+
Sbjct: 73 PTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFS 132
Query: 74 KFSRADYLRWKSENRIVPDGVNAKLLGCH 102
K + R+ + D A L+ C
Sbjct: 133 KDIKVPKSRYL---GYIKDYEGATLMECE 158
>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 183
Score = 24.7 bits (53), Expect = 2.8
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 11 QTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSH 45
G+ KPQG RV G++ NS
Sbjct: 58 LRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSD 92
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 112
Score = 24.5 bits (53), Expect = 2.8
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 32 QVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTK 74
L V+ D +A R+A PG Q+ I +T
Sbjct: 15 NRQLKVKVADRRVISTTDAERQAV-TPPGLQEAINDLVKKYTL 56
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 96
Score = 24.1 bits (52), Expect = 2.9
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 19 GKPQGTCARVAIGQVLLSV---RCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 68
G R+ G L+S+ + A+ + RAK + +I R
Sbjct: 44 GGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96
>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 327
Score = 24.6 bits (53), Expect = 4.4
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 52 RRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKS 85
A+ + P + R++ F Y+R S
Sbjct: 21 LNAELELPKD---MELREFALQPFGSDTYVRHLS 51
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId:
562]}
Length = 83
Score = 23.2 bits (50), Expect = 5.1
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 72 FTKFSRADYLRWKSENR 88
+++ S DYL W+ ++
Sbjct: 5 WSEESWDDYLYWQETDK 21
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 24.0 bits (50), Expect = 6.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 27 RVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 65
+VA+ Q+ S K +N A + RA + P + ++
Sbjct: 11 KVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVV 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.427
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 441,923
Number of extensions: 17861
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 16
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)