BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033434
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis
thaliana GN=NOL PE=2 SV=1
Length = 348
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 78/85 (91%)
Query: 35 VQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLT 94
+ PGMVTTDLLMSGATTKQAKFFINVLAEPA+VVAE LVP IR+I ASGS KPTY+RFLT
Sbjct: 264 LSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRAIPASGSMKPTYIRFLT 323
Query: 95 GVKAYSQIFSRIAFGARRNRYILED 119
G+KAY++IFSR+A GAR+NRY+ E+
Sbjct: 324 GIKAYTKIFSRVALGARKNRYVTEE 348
>sp|Q84ST4|NOL_ORYSJ Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa
subsp. japonica GN=NOL PE=1 SV=1
Length = 343
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 77/85 (90%)
Query: 35 VQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLT 94
+ PGMVTTDLLMSGATTKQAKFFIN+LAEPA+VVA+ LVP IR+I + S KPTY+RFLT
Sbjct: 259 LSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVPNIRAIPTNQSMKPTYIRFLT 318
Query: 95 GVKAYSQIFSRIAFGARRNRYILED 119
G+KAYS+IFSRIAFGARRN+Y+ ED
Sbjct: 319 GLKAYSRIFSRIAFGARRNKYVAED 343
>sp|Q5N800|NYC1_ORYSJ Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza
sativa subsp. japonica GN=NYC1 PE=1 SV=1
Length = 504
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 37 PGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLTGV 96
PGMV TDLL+SG++ + + F N++ E + VA LVP++R + SG + +LT
Sbjct: 369 PGMVLTDLLLSGSSLRNKQMF-NLICELPETVARTLVPRMRVVKGSGKA----INYLTPP 423
Query: 97 KAYSQIFSRIAFGARRNRYILED 119
+ + + + RR R+ E+
Sbjct: 424 RI---LLALVTAWVRRGRWFDEE 443
>sp|Q93ZA0|NYC1_ARATH Probable chlorophyll(ide) b reductase NYC1, chloroplastic
OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1
Length = 496
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 37 PGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 83
PGMV T+LL+SG++ K + F N++ E + VA LVP++R + SG
Sbjct: 360 PGMVLTELLLSGSSIKNKQMF-NIICELPETVARTLVPRMRVVKGSG 405
>sp|O52262|CHEB1_PSEPU Chemotaxis response regulator protein-glutamate methylesterase of
group 1 operon OS=Pseudomonas putida GN=cheB PE=3 SV=1
Length = 374
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 18 HDTQSFSFFIFHFSSIIVQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIR 77
H Q + FSS+ + VT D L +GA K F ++ P D V + L K+
Sbjct: 69 HIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNP-DKVKQMLCEKVH 127
Query: 78 SIAASGSTKPTYLR 91
+I+ S +Y R
Sbjct: 128 TISRSNRRLGSYAR 141
>sp|P0CM32|ATG22_CRYNJ Autophagy-related protein 22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=ATG22 PE=3 SV=1
Length = 546
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 9 KVTVLDAPYHDTQSFSFFIFHFSSIIVQPGMVTTD----LLMSGATTKQAK--FFINVLA 62
K+ + AP Q + +IF + I + G TT L S + A + +L
Sbjct: 315 KIGKMVAPKQIHQLPNLYIFLLAWIFLSDGFHTTTYAAILYASSVLSMSAPKIILVGILV 374
Query: 63 EPADVVAECLVPKIRSIAASGSTKP--TYLRFLTGVKA 98
+ A VV+ LVP+++ ++ S+KP Y L GV A
Sbjct: 375 QLAAVVSSVLVPRVQRRLSTTSSKPVTNYKVLLAGVVA 412
>sp|P0CM33|ATG22_CRYNB Autophagy-related protein 22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=ATG22 PE=3
SV=1
Length = 546
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 9 KVTVLDAPYHDTQSFSFFIFHFSSIIVQPGMVTTD----LLMSGATTKQAK--FFINVLA 62
K+ + AP Q + +IF + I + G TT L S + A + +L
Sbjct: 315 KIGKMVAPKQIHQLPNLYIFLLAWIFLSDGFHTTTYAAILYASSVLSMSAPKIILVGILV 374
Query: 63 EPADVVAECLVPKIRSIAASGSTKP--TYLRFLTGVKA 98
+ A VV+ LVP+++ ++ S+KP Y L GV A
Sbjct: 375 QLAAVVSSVLVPRVQRRLSTTSSKPVTNYKVLLAGVVA 412
>sp|Q88EW5|CHEB1_PSEPK Chemotaxis response regulator protein-glutamate methylesterase of
group 1 operon OS=Pseudomonas putida (strain KT2440)
GN=cheB1 PE=3 SV=1
Length = 370
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 18 HDTQSFSFFIFHFSSIIVQPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIR 77
H Q + FSS+ + VT D L +GA K F ++ P D V + L K+
Sbjct: 69 HIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNP-DKVKQLLCEKVH 127
Query: 78 SIAASGSTKPTYLR 91
+I+ S +Y R
Sbjct: 128 TISRSNRRIGSYAR 141
>sp|Q9C7G0|MA658_ARATH 65-kDa microtubule-associated protein 8 OS=Arabidopsis thaliana
GN=MAP65-8 PE=1 SV=2
Length = 562
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 2 LGLALGSKVTVLDAPYHDTQSFSFFIFHFSSI---IVQPGMVTTDLL 45
LG AL + ++DA Y D Q F I SS + PG +T D++
Sbjct: 257 LGRALSNLWNLMDASYEDRQKFFHVIDLLSSAPSDVCAPGSITLDII 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,050,965
Number of Sequences: 539616
Number of extensions: 1239364
Number of successful extensions: 3860
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3857
Number of HSP's gapped (non-prelim): 13
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)