Query 033435
Match_columns 119
No_of_seqs 115 out of 326
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 23:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 96.0 0.0055 1.9E-07 45.2 3.6 96 9-106 8-105 (145)
2 3ga3_A Interferon-induced heli 95.5 0.013 4.4E-07 42.7 4.0 92 9-104 7-100 (133)
3 2qfd_A Probable ATP-dependent 94.4 0.04 1.4E-06 40.6 4.0 80 12-103 25-116 (145)
4 3e0o_A Peptide methionine sulf 93.4 0.041 1.4E-06 40.5 2.5 66 12-86 41-106 (144)
5 3hcg_A Peptide methionine sulf 93.1 0.064 2.2E-06 39.6 3.1 68 12-87 42-109 (146)
6 3lrr_A Probable ATP-dependent 92.8 0.05 1.7E-06 38.8 2.2 85 15-103 6-94 (121)
7 4a2v_A RIG-I, retinoic acid in 92.7 0.085 2.9E-06 38.1 3.3 85 15-103 8-97 (131)
8 3cxk_A Methionine-R-sulfoxide 92.2 0.065 2.2E-06 40.2 2.2 66 12-85 72-137 (164)
9 2kv1_A Methionine-R-sulfoxide 91.9 0.067 2.3E-06 38.5 1.9 64 12-84 19-82 (124)
10 2kao_A Methionine-R-sulfoxide 91.0 0.093 3.2E-06 37.8 1.8 64 12-84 19-82 (124)
11 3mao_A Methionine-R-sulfoxide 90.9 0.091 3.1E-06 36.8 1.7 64 12-84 12-75 (105)
12 2k8d_A Peptide methionine sulf 89.5 0.089 3E-06 39.0 0.7 67 12-86 60-126 (151)
13 3e0m_A Peptide methionine sulf 86.8 0.32 1.1E-05 39.7 2.4 67 12-86 208-274 (313)
14 3hcj_A MSRB, peptide methionin 85.9 0.16 5.4E-06 37.7 0.2 66 12-85 49-114 (154)
15 2l1u_A MSRB2, methionine-R-sul 85.4 0.25 8.5E-06 36.3 1.0 66 12-86 36-109 (143)
16 4gl2_A Interferon-induced heli 74.8 1.1 3.6E-05 37.6 1.5 93 8-104 580-674 (699)
17 2ykg_A Probable ATP-dependent 64.0 4.8 0.00016 33.6 3.2 85 15-103 579-667 (696)
18 4a2w_A RIG-I, retinoic acid in 59.2 2 6.7E-05 38.5 0.0 86 14-103 812-902 (936)
19 1x6m_A GFA, glutathione-depend 48.9 22 0.00074 26.1 4.3 20 67-86 95-114 (196)
20 1nyp_A Pinch protein; LIM doma 34.5 14 0.0005 21.6 1.1 12 15-26 32-43 (66)
21 2iyb_E Testin, TESS, TES; LIM 34.5 12 0.00042 22.1 0.8 11 15-25 33-43 (65)
22 1x61_A Thyroid receptor intera 30.1 21 0.00072 21.1 1.3 11 15-25 34-44 (72)
23 3fac_A Putative uncharacterize 29.3 35 0.0012 22.6 2.5 31 54-84 51-81 (118)
24 2d8z_A Four and A half LIM dom 27.7 22 0.00075 20.9 1.1 11 15-25 32-42 (70)
25 2egq_A FHL1 protein; LIM domai 27.5 18 0.00061 21.8 0.7 11 15-25 47-57 (77)
26 1iz6_A Initiation factor 5A; S 27.2 42 0.0014 23.6 2.7 32 34-65 33-64 (138)
27 2lvu_A Zinc finger and BTB dom 32.7 14 0.00047 16.7 0.0 17 15-31 3-19 (26)
28 1a7i_A QCRP2 (LIM1); LIM domai 26.6 34 0.0012 20.7 1.9 13 15-27 35-47 (81)
29 1x4l_A Skeletal muscle LIM-pro 26.6 26 0.00089 20.8 1.3 11 15-25 36-46 (72)
30 1x68_A FHL5 protein; four-and- 26.0 24 0.00083 21.3 1.1 11 15-25 36-46 (76)
31 2eif_A IF-5A, protein (eukaryo 25.2 50 0.0017 23.1 2.8 31 35-65 38-68 (136)
32 2cur_A Skeletal muscle LIM-pro 24.7 24 0.00081 20.8 0.9 11 15-25 32-42 (69)
33 1wyh_A SLIM 2, skeletal muscle 24.6 32 0.0011 20.2 1.4 12 15-26 34-45 (72)
34 2m0e_A Zinc finger and BTB dom 24.6 18 0.00061 16.2 0.2 17 15-31 3-19 (29)
35 1rik_A E6APC1 peptide; E6-bind 24.5 18 0.00062 16.4 0.2 17 15-31 3-19 (29)
36 2ehe_A Four and A half LIM dom 24.1 25 0.00086 21.4 0.9 16 16-31 17-32 (82)
37 2lvr_A Zinc finger and BTB dom 28.4 18 0.00061 16.5 0.0 17 15-31 4-20 (30)
38 3mjh_B Early endosome antigen 20.8 15 0.00053 20.4 -0.5 18 14-31 5-22 (34)
39 1bkb_A Translation initiation 20.8 66 0.0023 22.3 2.7 31 35-65 36-66 (136)
40 2lvt_A Zinc finger and BTB dom 26.2 21 0.00071 16.3 0.0 17 15-31 3-19 (29)
41 1g47_A Pinch protein; LIM doma 20.7 31 0.001 20.6 0.8 12 15-26 40-51 (77)
42 3cpf_A Eukaryotic translation 20.7 54 0.0019 22.9 2.2 32 34-65 33-64 (138)
43 2kvh_A Zinc finger and BTB dom 20.5 16 0.00056 16.5 -0.4 16 15-30 4-19 (27)
44 2cu8_A Cysteine-rich protein 2 20.5 34 0.0012 20.5 1.0 12 15-26 37-48 (76)
45 1klr_A Zinc finger Y-chromosom 20.5 18 0.00062 16.3 -0.3 17 15-31 3-19 (30)
46 3er0_A Eukaryotic translation 20.2 79 0.0027 23.1 3.1 31 35-65 58-88 (167)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=95.95 E-value=0.0055 Score=45.19 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=60.7
Q ss_pred ecceeEEecCCCCccccCCCCeeeec--cccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435 9 LKGRSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 9 l~g~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (119)
.++.+.+.|++|.+.+++.+||-.-. -+=.-+++ |...+.+..+|..-.....+..+-..|.|.+|++.+|-....
T Consensus 8 ~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~y 85 (145)
T 3eqt_A 8 PVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIY 85 (145)
T ss_dssp CGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEE
T ss_pred CchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEe
Confidence 34444599999999999999975431 11001111 112333322322211123445677889999999999988877
Q ss_pred eccCCcceecCeEEEEeehh
Q 033435 87 AHDKNQKYKEGKFVLERYRI 106 (119)
Q Consensus 87 A~e~sqkYKEGkfILE~~~i 106 (119)
---+=+-.|.-.|++|...-
T Consensus 86 k~~~LP~LkIksFVve~~~g 105 (145)
T 3eqt_A 86 KSVKLPVLKVRSMLLETPQG 105 (145)
T ss_dssp TTEEEEEECGGGEEEEETTE
T ss_pred ccccCceEeEEEEEEEcCCC
Confidence 66667888999999987543
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=95.53 E-value=0.013 Score=42.65 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=60.3
Q ss_pred ecceeEEecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435 9 LKGRSYYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 9 l~g~~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (119)
.++.+.+.|++|.+.+++.+||-.- +-.=.-+++ |...+.+. +++.-.....+..+-..|.|. |++.+|-....
T Consensus 7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~f~d~~~~g~I~C~-Cgq~WG~~m~y 82 (133)
T 3ga3_A 7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKKCADYQINGEIICK-CGQAWGTMMVH 82 (133)
T ss_dssp CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEECSSCEEEEEEEET-TSCEEEEEEEE
T ss_pred CcceEEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccchhccccCCceEEEe-cCChhhhhEEe
Confidence 3444559999999999999997543 111111111 12333333 232221224667788999999 99999988776
Q ss_pred eccCCcceecCeEEEEee
Q 033435 87 AHDKNQKYKEGKFVLERY 104 (119)
Q Consensus 87 A~e~sqkYKEGkfILE~~ 104 (119)
---+=+-.|.-.|+||..
T Consensus 83 k~~~LP~LkIksFVve~~ 100 (133)
T 3ga3_A 83 KGLDLPCLKIRNFVVVFK 100 (133)
T ss_dssp TTEEEEEECGGGEEEEET
T ss_pred ccccCceEEEEEEEEEcC
Confidence 655677888899998873
No 3
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=94.40 E-value=0.04 Score=40.57 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=56.7
Q ss_pred eeEEecCCCCccccCCCCee----------eeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCe
Q 033435 12 RSYYKCRFCNSHLALADSVL----------SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQI 79 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lI----------Sk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~ 79 (119)
.+.+.|++|.+.+++.+||- .+.|. ..+.+..-+.. ...-+..+-..|.|. +|++.
T Consensus 25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~--k~f~d~~~~g~I~C~~~~Cg~~ 92 (145)
T 2qfd_A 25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKP--KQFSSFEKRAKIFCARQNCSHD 92 (145)
T ss_dssp CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSC--CCCSSEEEEEEEEECSTTTCCE
T ss_pred ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCccc--chhhceeCCceEEeCCcccCcc
Confidence 34599999999999999983 33443 22333311111 124455678999999 99999
Q ss_pred eeeEEEEeccCCcceecCeEEEEe
Q 033435 80 VGWKYVAAHDKNQKYKEGKFVLER 103 (119)
Q Consensus 80 lGWkY~~A~e~sqkYKEGkfILE~ 103 (119)
+|-....---+-+-.|.-.|+||.
T Consensus 93 WG~~m~yk~~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 93 WGIHVKYKTFEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEEETTEEEEEECGGGEEEEC
T ss_pred hhceEEEccccCceEEEEEEEEEe
Confidence 998877665668888999999986
No 4
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=93.40 E-value=0.041 Score=40.54 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=42.1
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-+ .+...+|+. -|+. =..|.|.+|+.+||--...
T Consensus 41 G~-Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D 106 (144)
T 3e0o_A 41 GL-YVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMI-RTEVRSRTADSHLGHVFND 106 (144)
T ss_dssp EE-EEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSC-EEEEEETTTCCEEEEEESC
T ss_pred EE-EEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCce-EEEEEcCCCCCccCCccCC
Confidence 45 999999999877653 46555664333444434 333444432 2443 2479999999999976643
No 5
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=93.08 E-value=0.064 Score=39.56 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=41.1
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEe
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAA 87 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A 87 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-.-.+...+|+. -|+. =..|.|++|+.+||--....
T Consensus 42 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DG 109 (146)
T 3hcg_A 42 GI-YVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPDG 109 (146)
T ss_dssp EE-EEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESCS
T ss_pred EE-EEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCCC
Confidence 45 999999999876653 466556643323333221222233432 1333 35789999999999776543
No 6
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=92.85 E-value=0.05 Score=38.83 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=56.0
Q ss_pred EecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEeccC
Q 033435 15 YKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHDK 90 (119)
Q Consensus 15 y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e~ 90 (119)
+.|++|.+.+++.+||-.- +-+=.-+++| ...+.+...+. .+. .-+.++-..|.|. +|++.+|-....---+
T Consensus 6 llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~~~ 81 (121)
T 3lrr_A 6 LLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKTFE 81 (121)
T ss_dssp EEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETTEE
T ss_pred EECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecccc
Confidence 8999999999999997432 1111111111 12233322222 222 3456778899999 9999999887766656
Q ss_pred CcceecCeEEEEe
Q 033435 91 NQKYKEGKFVLER 103 (119)
Q Consensus 91 sqkYKEGkfILE~ 103 (119)
=+-.|.-.|++|.
T Consensus 82 LP~LkI~sfvve~ 94 (121)
T 3lrr_A 82 IPVIKIESFVVED 94 (121)
T ss_dssp EEEECGGGEEEEE
T ss_pred CceEEEEEEEEEe
Confidence 7888999999987
No 7
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=92.72 E-value=0.085 Score=38.14 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=53.1
Q ss_pred EecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEeccC
Q 033435 15 YKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHDK 90 (119)
Q Consensus 15 y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e~ 90 (119)
+.|++|.+.+++.+||-.- +-+=.-+++| ...+.+..-+. .+. .-+.++-..|.|. +|++.+|-....---+
T Consensus 8 llCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~~~ 83 (131)
T 4a2v_A 8 LLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLTFD 83 (131)
T ss_dssp EEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETTEE
T ss_pred EEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecCcc
Confidence 8999999999999997432 1110111111 12222211111 111 2355678889999 9999988776654444
Q ss_pred -CcceecCeEEEEe
Q 033435 91 -NQKYKEGKFVLER 103 (119)
Q Consensus 91 -sqkYKEGkfILE~ 103 (119)
=+-.|.-.|++|.
T Consensus 84 ~LP~LkIksFVve~ 97 (131)
T 4a2v_A 84 NLPVIKIKSFVMES 97 (131)
T ss_dssp EEEEECGGGEEECC
T ss_pred cCceEeEEEEEEEe
Confidence 5678888999886
No 8
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=92.21 E-value=0.065 Score=40.21 Aligned_cols=66 Identities=20% Similarity=0.441 Sum_probs=40.9
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-+-.+...+|.. -|+ .-..|.|..|+.+||--..
T Consensus 72 Gi-Y~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~ 137 (164)
T 3cxk_A 72 GI-YHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE 137 (164)
T ss_dssp EE-EEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred eE-EEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence 45 999999999877653 465556643333333222233334432 133 3457999999999997664
No 9
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=91.93 E-value=0.067 Score=38.49 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=37.3
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (119)
-+ |.|+.|.++|=++++= |....|=.-.++.+-+-.+-..+++ .|+. ...|.|++|+.+||=-.
T Consensus 19 G~-Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GV-YVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EE-EEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EE-EEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 45 9999999999887653 5555553222222211111122221 1221 35799999999999654
No 10
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=91.01 E-value=0.093 Score=37.76 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=37.5
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (119)
-+ |.|+.|.++|=++++ .|....|=.-.++.+-.-.+...+|.. + +.-..|.|++|+.+||=-.
T Consensus 19 Gi-Y~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 19 GV-YVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CE-EEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred EE-EEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 45 999999999988774 355445532222222111111112211 1 1236899999999999765
No 11
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=90.95 E-value=0.091 Score=36.79 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=38.0
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-.-.+...+|. .++ .-..|.|++|+.+||--.
T Consensus 12 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 12 GV-YVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EE-EEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred EE-EEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence 45 999999999876653 45555564333333321111112221 121 246899999999999766
No 12
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.53 E-value=0.089 Score=38.99 Aligned_cols=67 Identities=21% Similarity=0.494 Sum_probs=41.2
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-.-.+...+|+.+ |+. =..|.|..|+.+||--...
T Consensus 60 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GI-YRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SE-EEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred EE-EEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence 45 999999999877653 4665566433333332212233333321 332 3579999999999977654
No 13
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=86.76 E-value=0.32 Score=39.66 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=40.6
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~ 86 (119)
-+ |.|+.|+++|=+++ ..|....|=.-.++.+-.-.+...+|+.+ |+. =..|.|.+|+.+||--...
T Consensus 208 G~-Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~D 274 (313)
T 3e0m_A 208 GI-YVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFTD 274 (313)
T ss_dssp EE-EEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEESC
T ss_pred eE-EEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccCC
Confidence 45 99999999987664 34665566433333332212222333321 443 3589999999999976643
No 14
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=85.92 E-value=0.16 Score=37.75 Aligned_cols=66 Identities=21% Similarity=0.456 Sum_probs=37.5
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (119)
-+ |.|+.|+++|=++++ .|....|=.-.++.+-.-.+...+|.. -|+. =..|.|.+|+.+||--..
T Consensus 49 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~ 114 (154)
T 3hcj_A 49 GV-YTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP 114 (154)
T ss_dssp EE-EEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred EE-EEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence 45 999999999876653 355445532222222111111222221 1332 257999999999997654
No 15
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=85.39 E-value=0.25 Score=36.27 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=39.0
Q ss_pred eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccc--------cCccceeeeeeecEEEeeeeeeeCCCeeeeE
Q 033435 12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIM--------LGPQEERLMLSGMHTVEDIFCCCCGQIVGWK 83 (119)
Q Consensus 12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWk 83 (119)
-+ |.|+.|+++|=++++ .|....|=.- |.+.+++. +...+|+. -|+. =..|.|+.|+.+||=-
T Consensus 36 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHV 106 (143)
T 2l1u_A 36 GM-YHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHV 106 (143)
T ss_dssp EE-EEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEE
T ss_pred eE-EEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCcc
Confidence 45 999999999877654 4555555322 33444211 11122221 1332 3579999999999976
Q ss_pred EEE
Q 033435 84 YVA 86 (119)
Q Consensus 84 Y~~ 86 (119)
...
T Consensus 107 F~D 109 (143)
T 2l1u_A 107 FPD 109 (143)
T ss_dssp ECC
T ss_pred cCC
Confidence 643
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=74.80 E-value=1.1 Score=37.61 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred eecceeEEecCCCCccccCCCCeee--eccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435 8 ELKGRSYYKCRFCNSHLALADSVLS--WSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV 85 (119)
Q Consensus 8 yl~g~~~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~ 85 (119)
|........|.+|.+.++..+||-. .+-+=.-.++ |.....+. .+..-.....+......|.|. |++.+|-.+.
T Consensus 580 ~~~~~~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~-~~~~~g~~~~ 655 (699)
T 4gl2_A 580 NNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQKKCADYQINGEIICK-CGQAWGTMMV 655 (699)
T ss_dssp --CCSEEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC----------------CEEECS-SSCEEEEECC
T ss_pred cCcceeEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccchhhhccccCCcEEee-cCchhhHHee
Confidence 4444334789999999999999743 1111011111 12333332 222111234566678899999 9999998776
Q ss_pred EeccCCcceecCeEEEEee
Q 033435 86 AAHDKNQKYKEGKFVLERY 104 (119)
Q Consensus 86 ~A~e~sqkYKEGkfILE~~ 104 (119)
.---+=+-.|.-.|++|..
T Consensus 656 ~~~~~~p~~~~~~~~~~~~ 674 (699)
T 4gl2_A 656 HKGLDLPCLKIRNFVVVFK 674 (699)
T ss_dssp CC---CEEECGGGEEEEET
T ss_pred EcccccceeEEEEEEEEcC
Confidence 6555677788888888874
No 17
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=64.03 E-value=4.8 Score=33.59 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=53.0
Q ss_pred EecCCCCccccCCCCe--eeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEeccC
Q 033435 15 YKCRFCNSHLALADSV--LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHDK 90 (119)
Q Consensus 15 y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e~ 90 (119)
..|.+|...++..+++ +..+.+=.-.++ |..-..+.. ++..+. .........|+|. +|++.+|-.+..-.-+
T Consensus 579 ~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~~~ 654 (696)
T 2ykg_A 579 LLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRP-HPKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKTFE 654 (696)
T ss_dssp EEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEE-EEEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETTEE
T ss_pred hhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeecc-CCcccc-ccccccCCceEeCCCCCCccccceEEEccee
Confidence 7899999999999985 322222111222 111111111 111111 3345567889999 9999999988655556
Q ss_pred CcceecCeEEEEe
Q 033435 91 NQKYKEGKFVLER 103 (119)
Q Consensus 91 sqkYKEGkfILE~ 103 (119)
=+.+|...|++|.
T Consensus 655 lp~~~~~~~~~~~ 667 (696)
T 2ykg_A 655 IPVIKIESFVVED 667 (696)
T ss_dssp EEEECGGGEEEEE
T ss_pred cceeeeeeEEEEe
Confidence 7778899999985
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.19 E-value=2 Score=38.48 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEecCCCCccccCCCCeee--eccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEecc
Q 033435 14 YYKCRFCNSHLALADSVLS--WSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHD 89 (119)
Q Consensus 14 ~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e 89 (119)
.+.|.+|...++..+||-. ++-+=.-+++|- ...++..-+. .+. .-..+....|+|. +|++.+|-....---
T Consensus 812 ~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f~--~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~~ 887 (936)
T 4a2w_A 812 NLLCGKCKAYACSTDDIRIIKDSHHIVLGEAFK--ERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLTF 887 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCCCCceeechhhheeecCCCeEecChhhh--hheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEeccc
Confidence 3899999999999999732 222212223332 2223322221 222 4445677899999 999999976644322
Q ss_pred C-CcceecCeEEEEe
Q 033435 90 K-NQKYKEGKFVLER 103 (119)
Q Consensus 90 ~-sqkYKEGkfILE~ 103 (119)
+ =+-.|.-.|++|.
T Consensus 888 ~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 888 DNLPVIKIKSFVMES 902 (936)
T ss_dssp ---------------
T ss_pred ccCceeeeeeEEEEe
Confidence 2 4566777788876
No 19
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=48.88 E-value=22 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=15.9
Q ss_pred EEeeeeeeeCCCeeeeEEEE
Q 033435 67 TVEDIFCCCCGQIVGWKYVA 86 (119)
Q Consensus 67 ~V~DI~C~~C~~~lGWkY~~ 86 (119)
.+.--+|..|++.|-|..+.
T Consensus 95 ~~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp SEEEEEETTTCCEEEEEECC
T ss_pred CeeeEECCCCCCcCCccccc
Confidence 36677999999999887643
No 20
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.50 E-value=14 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.8
Q ss_pred EecCCCCccccC
Q 033435 15 YKCRFCNSHLAL 26 (119)
Q Consensus 15 y~C~~C~thLa~ 26 (119)
|.|..|+.+|..
T Consensus 32 F~C~~C~~~L~~ 43 (66)
T 1nyp_A 32 FVCAKCEKPFLG 43 (66)
T ss_dssp CBCTTTCCBCSS
T ss_pred CEECCCCCCCCC
Confidence 888888888864
No 21
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.49 E-value=12 Score=22.09 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=8.5
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 33 F~C~~C~~~L~ 43 (65)
T 2iyb_E 33 FLCSCCSKCLI 43 (65)
T ss_dssp SBCTTTCCBCT
T ss_pred EECCCCCCcCC
Confidence 67888888875
No 22
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.07 E-value=21 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=8.8
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 34 F~C~~C~~~L~ 44 (72)
T 1x61_A 34 FVCSTCRAQLR 44 (72)
T ss_dssp CBCSSSCCBCT
T ss_pred CcccccCCcCC
Confidence 78888888884
No 23
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=29.31 E-value=35 Score=22.62 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=19.3
Q ss_pred CccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435 54 GPQEERLMLSGMHTVEDIFCCCCGQIVGWKY 84 (119)
Q Consensus 54 g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY 84 (119)
|+..-+....+...+.--+|..|++.|-|..
T Consensus 51 g~~~l~~y~~s~~~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 51 GAENLTLYQFGTRTAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CGGGEEEECCTTSCSEEEEETTTCCEEEEEC
T ss_pred ChhHceEEecCCCCEeeEECCCCCccccCcc
Confidence 5433333332333456779999999998864
No 24
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.67 E-value=22 Score=20.94 Aligned_cols=11 Identities=27% Similarity=0.926 Sum_probs=8.8
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 32 F~C~~C~~~L~ 42 (70)
T 2d8z_A 32 FVCTACRKQLS 42 (70)
T ss_dssp SBCSSSCCBCT
T ss_pred CccCCCCCcCC
Confidence 77888888875
No 25
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.55 E-value=18 Score=21.78 Aligned_cols=11 Identities=36% Similarity=1.077 Sum_probs=7.8
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|+
T Consensus 47 F~C~~C~~~L~ 57 (77)
T 2egq_A 47 FHCKKCSVNLA 57 (77)
T ss_dssp CBCSSSCCBCT
T ss_pred CEehhcCCCCC
Confidence 67777777775
No 26
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=27.18 E-value=42 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=26.8
Q ss_pred ccccCCceEEEeecccccccCccceeeeeeec
Q 033435 34 SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (119)
Q Consensus 34 ~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 65 (119)
.=+|+||.|+.=-++.|+..|...++.+-+|-
T Consensus 33 ~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 64 (138)
T 1iz6_A 33 SSPGKHGSAKARIEAVGIFDGKVRSIVKPTSA 64 (138)
T ss_dssp CCCCTTSCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred ecCCCCCceEEEEEEEECCCCCEEEEEecCCC
Confidence 34699999998789999999999887777765
No 27
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.68 E-value=14 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=13.3
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|+.-.+..++|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 88999988877776654
No 28
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.64 E-value=34 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.1
Q ss_pred EecCCCCccccCC
Q 033435 15 YKCRFCNSHLALA 27 (119)
Q Consensus 15 y~C~~C~thLa~~ 27 (119)
|.|..|+.+|...
T Consensus 35 F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 35 FLCMVCRKNLDST 47 (81)
T ss_dssp EECSSSCCEECSS
T ss_pred CccCCCCCCCCCC
Confidence 8888888888654
No 29
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.60 E-value=26 Score=20.77 Aligned_cols=11 Identities=27% Similarity=0.939 Sum_probs=9.1
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 36 F~C~~C~~~L~ 46 (72)
T 1x4l_A 36 FNCKKCSLSLV 46 (72)
T ss_dssp CBCSSSCCBCT
T ss_pred CEeccCCCcCC
Confidence 88888888886
No 30
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.99 E-value=24 Score=21.26 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=8.6
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 36 F~C~~C~~~L~ 46 (76)
T 1x68_A 36 FNCGKCSVSLV 46 (76)
T ss_dssp CBCTTTCCBCS
T ss_pred CChhhCCCcCC
Confidence 77888888776
No 31
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=25.23 E-value=50 Score=23.07 Aligned_cols=31 Identities=13% Similarity=-0.027 Sum_probs=25.4
Q ss_pred cccCCceEEEeecccccccCccceeeeeeec
Q 033435 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (119)
Q Consensus 35 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 65 (119)
=+|+||.|+.=-++.|+..|...++...+|-
T Consensus 38 KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 38 KPGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred cCCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 3699999997779999999998777766664
No 32
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.75 E-value=24 Score=20.76 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=7.9
Q ss_pred EecCCCCcccc
Q 033435 15 YKCRFCNSHLA 25 (119)
Q Consensus 15 y~C~~C~thLa 25 (119)
|.|..|+.+|.
T Consensus 32 F~C~~C~~~L~ 42 (69)
T 2cur_A 32 FVCVTCSKKLA 42 (69)
T ss_dssp TBCTTTCCBCT
T ss_pred CEECCCCCCCC
Confidence 67777777775
No 33
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.62 E-value=32 Score=20.24 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=8.3
Q ss_pred EecCCCCccccC
Q 033435 15 YKCRFCNSHLAL 26 (119)
Q Consensus 15 y~C~~C~thLa~ 26 (119)
|.|..|+.+|..
T Consensus 34 F~C~~C~~~L~~ 45 (72)
T 1wyh_A 34 FLCSGCEQPLGS 45 (72)
T ss_dssp CBCTTTCCBTTT
T ss_pred CeECCCCCcCCC
Confidence 677777777654
No 34
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.62 E-value=18 Score=16.21 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.1
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|...+...+.|.
T Consensus 3 ~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCSSCCCCCCTTTHHH
T ss_pred CcCCCCCcccCCHHHHH
Confidence 78999988877766654
No 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.53 E-value=18 Score=16.40 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=12.8
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|....+..+.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (29)
T 1rik_A 3 FACPECPKRFMRSDHLT 19 (29)
T ss_dssp EECSSSSCEESCSHHHH
T ss_pred ccCCCCCchhCCHHHHH
Confidence 88999988777666553
No 36
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=25 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=7.8
Q ss_pred ecCCCCccccCCCCee
Q 033435 16 KCRFCNSHLALADSVL 31 (119)
Q Consensus 16 ~C~~C~thLa~~~~lI 31 (119)
.|..|+.++...+.++
T Consensus 17 ~C~~C~~~I~~~~~~~ 32 (82)
T 2ehe_A 17 TCAECQQLIGHDSREL 32 (82)
T ss_dssp BCTTTCCBCCSSCCBC
T ss_pred cCccCCCccccCcEEE
Confidence 3555555555433333
No 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.41 E-value=18 Score=16.49 Aligned_cols=17 Identities=24% Similarity=0.596 Sum_probs=12.9
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|+..+...+.|.
T Consensus 4 ~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQ 20 (30)
Confidence 88999988777666654
No 38
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.81 E-value=15 Score=20.41 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.7
Q ss_pred EEecCCCCccccCCCCee
Q 033435 14 YYKCRFCNSHLALADSVL 31 (119)
Q Consensus 14 ~y~C~~C~thLa~~~~lI 31 (119)
+|.|.-|...|++.+.|+
T Consensus 5 GFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 5 GFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEECTTTCCEESSHHHHH
T ss_pred ccCCcHHHHHcCCHHHHH
Confidence 499999999999988775
No 39
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=20.76 E-value=66 Score=22.34 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=26.3
Q ss_pred cccCCceEEEeecccccccCccceeeeeeec
Q 033435 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (119)
Q Consensus 35 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 65 (119)
=+|++|.|+.=-.+.|+..|...++...+|-
T Consensus 36 KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~ 66 (136)
T 1bkb_A 36 KTGKHGSAKARIVAVGVFDGGKRTLSLPVDA 66 (136)
T ss_dssp CCSTTSCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred cCCCCCceEEEEEEEECCCCCeEEEEEcCCC
Confidence 3699999988889999999999887777765
No 40
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.16 E-value=21 Score=16.30 Aligned_cols=17 Identities=24% Similarity=0.667 Sum_probs=13.0
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|+.-++..++|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLI 19 (29)
Confidence 88999988777766654
No 41
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.71 E-value=31 Score=20.59 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=6.8
Q ss_pred EecCCCCccccC
Q 033435 15 YKCRFCNSHLAL 26 (119)
Q Consensus 15 y~C~~C~thLa~ 26 (119)
|.|..|+.+|..
T Consensus 40 F~C~~C~~~L~~ 51 (77)
T 1g47_A 40 FVCAQCFQQFPE 51 (77)
T ss_dssp CCCTTTCCCCGG
T ss_pred CeECCCCCCCCC
Confidence 556666655544
No 42
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=20.67 E-value=54 Score=22.93 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=22.6
Q ss_pred ccccCCceEEEeecccccccCccceeeeeeec
Q 033435 34 SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (119)
Q Consensus 34 ~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 65 (119)
.=+|++|.|+.=-.+.|+..|...++..-+|-
T Consensus 33 ~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~ 64 (138)
T 3cpf_A 33 SKTGKHGHAKVHLVGIDIFTGKKYEDICPSTH 64 (138)
T ss_dssp ECC----CCEEEEEEEETTTCCEEEEEEETTS
T ss_pred ccCCCCccEEEEEEEEECCCCCEEEEEeCCCC
Confidence 34699999988889999999999887776664
No 43
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.50 E-value=16 Score=16.52 Aligned_cols=16 Identities=13% Similarity=0.503 Sum_probs=11.9
Q ss_pred EecCCCCccccCCCCe
Q 033435 15 YKCRFCNSHLALADSV 30 (119)
Q Consensus 15 y~C~~C~thLa~~~~l 30 (119)
|.|..|+..+...+.|
T Consensus 4 ~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 4 FSCSLCPQRSRDFSAM 19 (27)
T ss_dssp EECSSSSCEESSHHHH
T ss_pred ccCCCcChhhCCHHHH
Confidence 8999998877665544
No 44
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.49 E-value=34 Score=20.48 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.3
Q ss_pred EecCCCCccccC
Q 033435 15 YKCRFCNSHLAL 26 (119)
Q Consensus 15 y~C~~C~thLa~ 26 (119)
|.|..|+.+|..
T Consensus 37 F~C~~C~~~L~~ 48 (76)
T 2cu8_A 37 LKCERCSKTLTP 48 (76)
T ss_dssp CBCSSSCCBCCT
T ss_pred CCCCCCCCccCC
Confidence 778888888774
No 45
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.46 E-value=18 Score=16.33 Aligned_cols=17 Identities=24% Similarity=0.708 Sum_probs=13.2
Q ss_pred EecCCCCccccCCCCee
Q 033435 15 YKCRFCNSHLALADSVL 31 (119)
Q Consensus 15 y~C~~C~thLa~~~~lI 31 (119)
|.|..|...+...+.|.
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCSSSSCCCSCSHHHH
T ss_pred ccCCCCCCccCCHHHHH
Confidence 78999988887766654
No 46
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=20.17 E-value=79 Score=23.11 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.1
Q ss_pred cccCCceEEEeecccccccCccceeeeeeec
Q 033435 35 FNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65 (119)
Q Consensus 35 F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~ 65 (119)
=+|++|.|+.=-.+.|+..|...++..-+|-
T Consensus 58 KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~ 88 (167)
T 3er0_A 58 KTGKHGHAKVHLVAIDIFTGKKLEDLSPSTH 88 (167)
T ss_dssp CCSSSSCCEEEEEEEESSSCCCEEEEEESSS
T ss_pred CCCCcCceEEEEEEEEcCCCCEEEEEEcCCC
Confidence 4789999998889999999999888776664
Done!