Query 033436
Match_columns 119
No_of_seqs 104 out of 213
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_G Cytochrome B-C1 complex 100.0 1.3E-44 4.5E-49 266.9 10.4 95 8-105 19-113 (126)
2 1pp9_F Ubiquinol-cytochrome C 100.0 3.3E-44 1.1E-48 259.7 9.6 91 11-105 11-101 (110)
3 2klz_A Ataxin-3; UIM, ubiquiti 41.9 7.2 0.00025 24.5 0.6 34 43-77 6-41 (52)
4 1tty_A Sigma-A, RNA polymerase 28.4 48 0.0016 20.7 2.9 17 43-59 8-24 (87)
5 1gng_X Frattide, glycogen synt 22.9 20 0.00067 21.3 0.2 12 44-55 23-34 (39)
6 1q0v_A Hydrophilic protein; ha 21.6 23 0.00079 23.9 0.4 11 66-76 15-25 (81)
7 4ayb_K DNA-directed RNA polyme 19.7 1.2E+02 0.004 20.8 3.6 46 31-81 1-52 (95)
8 4afj_X Proto-oncogene FRAT1; t 19.3 38 0.0013 19.0 0.9 13 44-56 14-26 (30)
9 3qmx_A Glutaredoxin A, glutare 15.2 95 0.0033 19.7 2.3 32 21-53 29-60 (99)
10 3ipz_A Monothiol glutaredoxin- 14.3 71 0.0024 20.6 1.4 33 20-53 35-67 (109)
No 1
>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*
Probab=100.00 E-value=1.3e-44 Score=266.85 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=88.8
Q ss_pred HHhhHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhccc
Q 033436 8 LLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQ 87 (119)
Q Consensus 8 ~~~p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~ 87 (119)
++..+.+|+++||+|++ ||||+||+||||++| ++|+|+|||+|||+++.++|+|||+||+|||++|++||||||||+
T Consensus 19 ~l~~~~~p~~~w~~~~~--g~rk~GL~~DDl~~e-~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~ 95 (126)
T 3cx5_G 19 VLSKLCVPVANQFINLA--GYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKA 95 (126)
T ss_dssp HHHHHHHHHHHHHHHHH--CGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCG
T ss_pred HHHHHHHHHHHHHHHHH--HHHhccccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCHHHccCC
Confidence 33455667779999997 699999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCCCcChHHHHHHHHhhh
Q 033436 88 TPFRNYLQDMLALVSILE 105 (119)
Q Consensus 88 eed~~YL~P~i~ev~~e~ 105 (119)
|||++||+|||+||++|.
T Consensus 96 e~d~~YL~p~i~ev~~E~ 113 (126)
T 3cx5_G 96 QEDVPYLLPYILEAEAAA 113 (126)
T ss_dssp GGCCCSSHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 999999999999999985
No 2
>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...
Probab=100.00 E-value=3.3e-44 Score=259.74 Aligned_cols=91 Identities=30% Similarity=0.388 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhhhHHhhhccccccCCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhccccccCCChhhhcccCCC
Q 033436 11 PKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPF 90 (119)
Q Consensus 11 p~~~~~a~wy~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPkeqwtk~eed 90 (119)
.+..|+++||+|++ ||||+||+||||++| +++|+|||+|||+++.++|+|||+||+|||++|++||||||||+|||
T Consensus 11 ~~~~~~~~w~~n~s--g~rk~GL~~DDl~~e--~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~wtk~e~d 86 (110)
T 1pp9_F 11 RWLEGIRKWYYNAA--GFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEED 86 (110)
T ss_dssp -CHHHHHHHHHHHH--CGGGGTCCGGGGSCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGC
T ss_pred HHHHHHHHHHHHHH--HHHHhcccHHhccCC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHccCCccc
Confidence 45678889999988 599999999999999 68999999999999999999999999999999999999999999999
Q ss_pred CcChHHHHHHHHhhh
Q 033436 91 RNYLQDMLALVSILE 105 (119)
Q Consensus 91 ~~YL~P~i~ev~~e~ 105 (119)
++||+|||+||++|.
T Consensus 87 ~~YL~p~i~ev~~E~ 101 (110)
T 1pp9_F 87 KSYLEPYLKEVIRER 101 (110)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999999985
No 3
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=41.94 E-value=7.2 Score=24.50 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=20.5
Q ss_pred CChHHHHHHhcCCHHHH--HHHHHHHHHHHhcccccc
Q 033436 43 YDLDIKEALDRLPREIV--DARNQRLKRAMDLSMKHE 77 (119)
Q Consensus 43 e~~~V~eALrRLP~~~~--~~R~~Ri~RA~qlS~~h~ 77 (119)
++++.|+||.- +.++. .+----++||+||||+..
T Consensus 6 DEedlqrALal-SRQE~dmEDeeadLrrAiqLSmQGs 41 (52)
T 2klz_A 6 DEEDLQRALAL-SRQEIDMEDEEADLRRAIQLSMQGS 41 (52)
T ss_dssp HHHHHHHHHHH-HHHHHCCSSSHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHH-HHHHhccchhHHHHHHHHHHHhhcc
Confidence 45788888752 22221 112224789999999854
No 4
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.37 E-value=48 Score=20.67 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=13.1
Q ss_pred CChHHHHHHhcCCHHHH
Q 033436 43 YDLDIKEALDRLPREIV 59 (119)
Q Consensus 43 e~~~V~eALrRLP~~~~ 59 (119)
....+.+||..||+.+.
T Consensus 8 ~~~~l~~~l~~L~~~er 24 (87)
T 1tty_A 8 MREELEKVLKTLSPREA 24 (87)
T ss_dssp CCSHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 45678889999988754
No 5
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=22.91 E-value=20 Score=21.30 Aligned_cols=12 Identities=50% Similarity=0.429 Sum_probs=9.2
Q ss_pred ChHHHHHHhcCC
Q 033436 44 DLDIKEALDRLP 55 (119)
Q Consensus 44 ~~~V~eALrRLP 55 (119)
.--|+||++||-
T Consensus 23 G~LIkEAVrRlq 34 (39)
T 1gng_X 23 GNLIKEAVRRLH 34 (39)
T ss_dssp TCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 346899999974
No 6
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=21.60 E-value=23 Score=23.87 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.3
Q ss_pred HHHHHhccccc
Q 033436 66 LKRAMDLSMKH 76 (119)
Q Consensus 66 i~RA~qlS~~h 76 (119)
|+||++||++-
T Consensus 15 LkrAieLSL~E 25 (81)
T 1q0v_A 15 IRKAIELSLKE 25 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhHHH
Confidence 78999999863
No 7
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=19.71 E-value=1.2e+02 Score=20.83 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=22.7
Q ss_pred hccccccCCCCCCChHHHHHH-----hcCCHHHHHHHHHHH-HHHHhccccccCCCh
Q 033436 31 FGLRYDDLYDPYYDLDIKEAL-----DRLPREIVDARNQRL-KRAMDLSMKHEYLPE 81 (119)
Q Consensus 31 ~GL~yDDLl~e~e~~~V~eAL-----rRLP~~~~~~R~~Ri-~RA~qlS~~h~~LPk 81 (119)
+||..|+.+.+ +-...+.. .+|. .|+|.+=| .||.|+|+-...+=+
T Consensus 1 ~~~~~dg~i~~--~l~~~~~~~~~~~~kLT---KYEkaRIiG~RA~Qis~GA~~~I~ 52 (95)
T 4ayb_K 1 MGLERDGILSQ--DLHFNEVFVSLWQNKLT---RYEIARVISARALQLAMGAPALID 52 (95)
T ss_dssp ----------C--CSHHHHHHHHHHTSSCC---HHHHHHHHHHHHHHHHTCCCCSSC
T ss_pred CCccccCeecc--hhhccchhhhccccccc---HHHHHHHHHHHHHHHHCCCCceEe
Confidence 58888888877 44444444 3555 35555444 599999998887643
No 8
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=19.28 E-value=38 Score=19.00 Aligned_cols=13 Identities=46% Similarity=0.391 Sum_probs=9.8
Q ss_pred ChHHHHHHhcCCH
Q 033436 44 DLDIKEALDRLPR 56 (119)
Q Consensus 44 ~~~V~eALrRLP~ 56 (119)
.--++||++||-.
T Consensus 14 G~likeAvrrl~s 26 (30)
T 4afj_X 14 GNLIKEAVRRLHS 26 (30)
T ss_dssp TCHHHHHHHHTCC
T ss_pred cchHHHHHHHHHH
Confidence 4567999999853
No 9
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=15.22 E-value=95 Score=19.75 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHhhhHHhhhccccccCCCCCCChHHHHHHhc
Q 033436 21 MKTISKRLRNFGLRYDDLYDPYYDLDIKEALDR 53 (119)
Q Consensus 21 ~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrR 53 (119)
+..+-.-+.+.|+.|...=.+ +++..++.|..
T Consensus 29 C~~ak~~L~~~~i~y~~idI~-~~~~~~~~l~~ 60 (99)
T 3qmx_A 29 CMRALALLKRKGVEFQEYCID-GDNEAREAMAA 60 (99)
T ss_dssp HHHHHHHHHHHTCCCEEEECT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEcC-CCHHHHHHHHH
Confidence 344444678889999877556 57777766643
No 10
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=14.32 E-value=71 Score=20.64 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHHhhhHHhhhccccccCCCCCCChHHHHHHhc
Q 033436 20 HMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDR 53 (119)
Q Consensus 20 y~~~~g~g~rk~GL~yDDLl~e~e~~~V~eALrR 53 (119)
|++.+-+-++++|+.|...=.. +++.++++|..
T Consensus 35 ~C~~ak~~L~~~gi~~~~~dI~-~~~~~~~~l~~ 67 (109)
T 3ipz_A 35 FSNTVVQILKNLNVPFEDVNIL-ENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGG-GCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEECC-CCHHHHHHHHH
Confidence 3444445688899998765444 47777777754
Done!