AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>033437
MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ
RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLILQLPIGEESSSC
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G17270 AT5G17270 AT5G17270	protein from Arabidopsis thaliana	1.4e-38
BLAST match view associations BLAST with AT5G37130 AT5G37130 AT5G37130	protein from Arabidopsis thaliana	8.2e-36
BLAST match view associations BLAST with TTC27 TTC27 TTC27 Tetratricopeptide repeat protein 27	protein from Homo sapiens	0.00031
BLAST match view associations BLAST with Ttc27 Ttc27 Ttc27 tetratricopeptide repeat domain 27	protein from Mus musculus	0.00083
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033437
        (119 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167165 - symbol:AT5G17270 species:3702 "Arabi...   422  1.4e-38   1
TAIR|locus:2166153 - symbol:AT5G37130 species:3702 "Arabi...   396  8.2e-36   1
UNIPROTKB|Q6P3X3 - symbol:TTC27 "Tetratricopeptide repeat...   101  0.00031   1
MGI|MGI:1921446 - symbol:Ttc27 "tetratricopeptide repeat ...    97  0.00083   1


>TAIR|locus:2167165 [details] [associations]
            symbol:AT5G17270 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006406 "mRNA export from
            nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0010074 "maintenance of meristem identity" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
            "protein ubiquitination" evidence=RCA] [GO:0016571 "histone
            methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 Pfam:PF13181 PROSITE:PS50005 PROSITE:PS50293
            SMART:SM00028 EMBL:CP002688 GenomeReviews:BA000015_GR
            eggNOG:COG0457 Gene3D:1.25.40.10 EMBL:AB005238 IPI:IPI00522610
            RefSeq:NP_197229.1 UniGene:At.54881 ProteinModelPortal:Q9FFI4
            SMR:Q9FFI4 PaxDb:Q9FFI4 PRIDE:Q9FFI4 EnsemblPlants:AT5G17270.1
            GeneID:831592 KEGG:ath:AT5G17270 TAIR:At5g17270
            HOGENOM:HOG000030273 InParanoid:Q9FFI4 OMA:RWESTRG PhylomeDB:Q9FFI4
            ProtClustDB:CLSN2686329 Genevestigator:Q9FFI4 Uniprot:Q9FFI4
        Length = 899

 Score = 422 (153.6 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 81/119 (68%), Positives = 98/119 (82%)

Query:     1 MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
             MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWESTR RTKGRALEMMDKLV  I+ S PGV+ 
Sbjct:   413 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESTRGRTKGRALEMMDKLVGAINKSDPGVSN 472

Query:    61 RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL-QLPIGEESSS 118
             RIP CY + +PTIPALRKEY +LLVSCGL+GEAI  FE L LWD+LI     +G++S++
Sbjct:   473 RIPLCYAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAA 531


>TAIR|locus:2166153 [details] [associations]
            symbol:AT5G37130 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048046 "apoplast"
            evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            EMBL:CP002688 GO:GO:0048046 GO:GO:0016740 Gene3D:1.25.40.10
            IPI:IPI00528958 RefSeq:NP_198529.3 UniGene:At.9476
            ProteinModelPortal:F4K5W3 SMR:F4K5W3 PRIDE:F4K5W3
            EnsemblPlants:AT5G37130.1 GeneID:833685 KEGG:ath:AT5G37130
            OMA:AWNNIAS Uniprot:F4K5W3
        Length = 877

 Score = 396 (144.5 bits), Expect = 8.2e-36, P = 8.2e-36
 Identities = 76/119 (63%), Positives = 95/119 (79%)

Query:     1 MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
             MAPYIEAIDSQ+S+ F+L+ FCDLLR+RWES+R RT+ RA +MMDKLV  IS S PGV+ 
Sbjct:   405 MAPYIEAIDSQKSTYFVLRCFCDLLRVRWESSRYRTRERARDMMDKLVGAISKSDPGVSN 464

Query:    61 RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLIL-QLPIGEESSS 118
             RIP CY + +PTIPALRKEY +LLVSCG +GEAI  FE L LWD+LI     +G++S++
Sbjct:   465 RIPLCYAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSAA 523


>UNIPROTKB|Q6P3X3 [details] [associations]
            symbol:TTC27 "Tetratricopeptide repeat protein 27"
            species:9606 "Homo sapiens" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001440
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            eggNOG:COG0457 Gene3D:1.25.40.10 EMBL:AL133246 EMBL:AK000279
            EMBL:AK000665 EMBL:AK027570 EMBL:BC001248 EMBL:BC063791
            IPI:IPI00183938 RefSeq:NP_001180438.1 RefSeq:NP_060205.3
            UniGene:Hs.468125 ProteinModelPortal:Q6P3X3 SMR:Q6P3X3
            IntAct:Q6P3X3 PhosphoSite:Q6P3X3 DMDM:74758258 PaxDb:Q6P3X3
            PRIDE:Q6P3X3 Ensembl:ENST00000317907 GeneID:55622 KEGG:hsa:55622
            UCSC:uc002rom.3 CTD:55622 GeneCards:GC02P032853 HGNC:HGNC:25986
            HPA:HPA031246 neXtProt:NX_Q6P3X3 PharmGKB:PA145007326
            HOGENOM:HOG000067764 HOVERGEN:HBG103158 InParanoid:Q6P3X3
            OMA:LHPQDFL OrthoDB:EOG49CQ70 GenomeRNAi:55622 NextBio:60232
            ArrayExpress:Q6P3X3 Bgee:Q6P3X3 CleanEx:HS_TTC27
            Genevestigator:Q6P3X3 Uniprot:Q6P3X3
        Length = 843

 Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query:    24 LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
             +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct:   390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query:    84 LVSCGLIGEAIKNFEDLVLWDSLIL 108
             L   G    A++ FE L +W+ +++
Sbjct:   450 LFELGCTSSALQIFEKLEMWEDVVI 474


>MGI|MGI:1921446 [details] [associations]
            symbol:Ttc27 "tetratricopeptide repeat domain 27"
            species:10090 "Mus musculus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR001440
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            MGI:MGI:1921446 eggNOG:COG0457 Gene3D:1.25.40.10
            GeneTree:ENSGT00500000044929 CTD:55622 HOGENOM:HOG000067764
            HOVERGEN:HBG103158 OMA:LHPQDFL OrthoDB:EOG49CQ70 EMBL:AK030942
            EMBL:AK049324 EMBL:AK168138 EMBL:BC021912 IPI:IPI00331230
            IPI:IPI00854004 RefSeq:NP_690030.3 UniGene:Mm.209503
            ProteinModelPortal:Q8CD92 SMR:Q8CD92 PhosphoSite:Q8CD92
            PaxDb:Q8CD92 PRIDE:Q8CD92 Ensembl:ENSMUST00000024882 GeneID:74196
            KEGG:mmu:74196 UCSC:uc008dok.2 UCSC:uc008dol.1 InParanoid:Q8CD92
            NextBio:340070 Bgee:Q8CD92 CleanEx:MM_TTC27 Genevestigator:Q8CD92
            Uniprot:Q8CD92
        Length = 847

 Score = 97 (39.2 bits), Expect = 0.00083, P = 0.00083
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query:    24 LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
             +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct:   394 ILRTKLERGSTRRVERAMRQTQALADQFEDKATSVLERLKIFYCCQVPPHWAVQRQLAGL 453

Query:    84 LVSCGLIGEAIKNFEDLVLWDSLIL 108
             L   G    A++ FE L +W+ +++
Sbjct:   454 LFELGCTSSALQIFEKLEMWEDVVI 478


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.44    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.11u 0.12s 12.23t   Elapsed:  00:00:00
  Total cpu time:  12.11u 0.12s 12.23t   Elapsed:  00:00:00
  Start:  Sat May 11 03:10:35 2013   End:  Sat May 11 03:10:35 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
