BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033437
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HXM|B Chain B, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|D Chain D, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|F Chain F, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
 pdb|1HXM|H Chain H, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
           RECEPTOR
          Length = 242

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 15  CFILKFFCDLLRIRWESTRSRT 36
           C + KFF D+++I WE  +S T
Sbjct: 154 CLLEKFFPDVIKIHWEEKKSNT 175


>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
           Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
           Ligand
 pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
           Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
           Ligand
 pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
           Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
           Ligand
 pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
           Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
           Ligand
          Length = 258

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 44  MDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLW 103
           +DK++E    S P V Q +PF  V     +  + K   + LV+     + I +F  L L 
Sbjct: 31  VDKILEAELISDPKVEQVVPFEQVNENDPVSNICKAADRQLVTLVEWAKRIPHFSSLPLE 90

Query: 104 DSLIL 108
           D +IL
Sbjct: 91  DQVIL 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,228,135
Number of Sequences: 62578
Number of extensions: 109865
Number of successful extensions: 244
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)