BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033437
         (119 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54BW6|TTC27_DICDI Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium
           discoideum GN=ttc27 PE=3 SV=1
          Length = 853

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 1   MAPYIEAIDSQQSSCFILKFFCDLLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQ 60
           M PYI+    ++S+ +I+     L++ R E   S+T  RA+  +  LV+   + +   T+
Sbjct: 401 MLPYIQKT-LEKSNNWIIHSMGLLIKSRLEIVSSKTAERAVLQIQALVDQYDDPTSSATE 459

Query: 61  RIPFCYVICIPTIPALRKEYAKLLVSCGLIGEAIKNFEDLVLWDSLI 107
           RI   Y    P    L KE A+  +  G    A + FE L +WD  I
Sbjct: 460 RINAIYSTDYPARWDLEKEVAERFIGIGAAASAFEIFERLEMWDEAI 506


>sp|Q5F3K0|TTC27_CHICK Tetratricopeptide repeat protein 27 OS=Gallus gallus GN=TTC27 PE=2
           SV=1
          Length = 844

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 44/85 (51%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           LLR + E   +R   RA++    L +   + +  V++R+   Y   +P   A++++ A L
Sbjct: 391 LLRTKLEKGSTRRMERAMKQTQALADQFEDVNTSVSERMKIFYCCQVPPHWAIQRQLASL 450

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ +E+L +W+  ++
Sbjct: 451 LFELGCTSSALQIYEELEMWEDAVI 475


>sp|Q5RBW9|TTC27_PONAB Tetratricopeptide repeat protein 27 OS=Pongo abelii GN=TTC27 PE=2
           SV=1
          Length = 843

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 450 LFELGCTSSALQIFEKLEMWEDVVI 474


>sp|Q6P3X3|TTC27_HUMAN Tetratricopeptide repeat protein 27 OS=Homo sapiens GN=TTC27 PE=1
           SV=1
          Length = 843

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 390 ILRTKLEKGSTRRVERAMRQTQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASL 449

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 450 LFELGCTSSALQIFEKLEMWEDVVI 474


>sp|Q17QZ7|TTC27_BOVIN Tetratricopeptide repeat protein 27 OS=Bos taurus GN=TTC27 PE=2
           SV=1
          Length = 847

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 394 ILRTKLERGSTRRVERAMRQTQALADQFEDKTASVLERLKIFYCCQVPPHWAVQRQLAGL 453

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 454 LFELGCTNSALQIFEKLEMWEDVVI 478


>sp|Q8CD92|TTC27_MOUSE Tetratricopeptide repeat protein 27 OS=Mus musculus GN=Ttc27 PE=2
           SV=2
          Length = 847

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 24  LLRIRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTIPALRKEYAKL 83
           +LR + E   +R   RA+     L +   + +  V +R+   Y   +P   A++++ A L
Sbjct: 394 ILRTKLERGSTRRVERAMRQTQALADQFEDKATSVLERLKIFYCCQVPPHWAVQRQLAGL 453

Query: 84  LVSCGLIGEAIKNFEDLVLWDSLIL 108
           L   G    A++ FE L +W+ +++
Sbjct: 454 LFELGCTSSALQIFEKLEMWEDVVI 478


>sp|A5PKR8|EFGM_XENLA Elongation factor G, mitochondrial OS=Xenopus laevis GN=gfm1 PE=2
           SV=1
          Length = 748

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 27  IRWESTRSRTKGRALEMMDKLVEGISNSSPGVTQRIPFCYVICIPTI----PALRKEYAK 82
           +R++   +  +  A +   +L+E ++NS   + +         IPT+    PA+R+   K
Sbjct: 231 VRYDDIPAEFRAEATDRRQELIESVANSDEILGEMF---LEEKIPTVADLKPAIRRATLK 287

Query: 83  LLVSCGLIGEAIKNFEDLVLWDSLILQLP 111
            L +  L+G A+KN     L D+++  LP
Sbjct: 288 RLFTPVLVGSALKNKGVQPLLDAVLEYLP 316


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,190,850
Number of Sequences: 539616
Number of extensions: 1418019
Number of successful extensions: 3511
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3503
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)