BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033440
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
+A + A E K KGNEY KKG Y A+ R N+ V D EN++LY+NRA
Sbjct: 5 LAYINPELAQEEKNKGNEYFKKG--DYPTAM----RHYNEAVKRDPENAILYSNRAACLT 58
Query: 83 LLGNYRRAFTDAEEALKLCPTNVKVVI 109
L ++RA D + ++L +K I
Sbjct: 59 KLMEFQRALDDCDTCIRLDSKFIKGYI 85
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
A+ +K KGNE +KG Y A+ YT AI +N +++ LY+NRA L ++ A
Sbjct: 16 ALMVKNKGNECFQKG--DYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLA 69
Query: 91 FTDAEEALKLCPTNVK 106
D EE ++L PT +K
Sbjct: 70 LKDCEECIQLEPTFIK 85
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
ELKEKGN+ + G + DA+ CY+ AI D N VLY+NR+ G+Y++A+
Sbjct: 6 ELKEKGNKALSVG--NIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Query: 93 DAEEALKLCP 102
D + + L P
Sbjct: 60 DGCKTVDLKP 69
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
+K +A ELKE+GN G+K Y +A CY RAI +N L +V Y NRA L +
Sbjct: 4 MKSPSAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ 57
Query: 86 NYRRAFTDAEEALKLCPTNVK 106
+A D AL+L +VK
Sbjct: 58 QPEQALADCRRALELDGQSVK 78
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
+A ELKE+GN G+K Y +A CY RAI +N L +V Y NRA L + +
Sbjct: 3 SAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQ 56
Query: 90 AFTDAEEALKLCPTNVK 106
A D AL+L +VK
Sbjct: 57 ALADCRRALELDGQSVK 73
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94
KE+GN K+G Y +A+ CY +Q + + +N V Y+N+A + LG Y +A
Sbjct: 8 KEQGNSLFKQGL--YREAVHCY----DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 95 EEALKLCPTNVKVVI 109
++ L+ T V I
Sbjct: 62 QQGLRYTSTAEHVAI 76
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
S+ +L+++GNE K G Y A+ YT+A+ + + + +VL+ NRA +L L +Y
Sbjct: 26 SSVEQLRKEGNELFKCG--DYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYD 82
Query: 89 RAFTDAEEALKLCPTNVKVV 108
+A T+A +A++ +VK +
Sbjct: 83 KAETEASKAIEKDGGDVKAL 102
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
GN Y K+G Y AI+ Y +A+ D N+ + R + G+Y++A D ++A
Sbjct: 50 GNAYYKQG--DYQKAIEYYQKALE----LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Query: 98 LKLCPTNVKV 107
L+L P N K
Sbjct: 104 LELDPNNAKA 113
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
GN Y K+G Y AI+ Y +A+ D N+ + N + G+Y++A ++A
Sbjct: 16 GNAYYKQG--DYQKAIEYYQKALE----LDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 98 LKLCPTNVKV 107
L+L P N K
Sbjct: 70 LELDPNNAKA 79
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
K+ A+ LK+KGN++ + K Y DAI Y A L E+ V Y+N + + +G+
Sbjct: 2 KDKYALALKDKGNQFFR--NKKYDDAIKYYNWA-----LELKEDPVFYSNLSACYVSVGD 54
Query: 87 YRRAFTDAEEALKLCPTNVKVVI 109
++ + +AL+L P KV++
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLL 77
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV--KVVILCSGSHPNQF 119
DS NS +Y +R +N +L NY +A D ++A +L P N+ + + C N+F
Sbjct: 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93
LK +GNE +K +++ A+ Y +AI N N+V + NRA LGNY A D
Sbjct: 15 LKTEGNEQMKV--ENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 94 AEEALKLCPTNVK 106
E A+ + P K
Sbjct: 69 CERAICIDPAYSK 81
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
+LK +GN + +K YS AID YT+A++ N + +NRA G + +A
Sbjct: 13 KLKSEGNAAM--ARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAE 66
Query: 93 DAEEALKLCPTNVKV 107
DAE A + P K
Sbjct: 67 DAELATVVDPKYSKA 81
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A ++A
Sbjct: 16 GNAYYKQGD--YDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 98 LKLCPTNVKVVILCSGSHPNQ 118
L+L P N + ++ Q
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQ 90
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A ++A
Sbjct: 50 GNAYYKQGD--YDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 98 LKLCPTNVKV 107
L+L P N +
Sbjct: 104 LELDPNNAEA 113
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
GN Y K+G Y +AI+ Y +A+ D N+ + N + G+Y A ++A
Sbjct: 16 GNAYYKQGD--YDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 98 LKLCPTNVKV 107
L+L P N +
Sbjct: 70 LELDPNNAEA 79
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 31 AIELK-EKGNEYVKKGK-----KHYSDAIDCYTRAINQNVLSDSENSVLYANRA 78
AI+L E+ ++ KGK + Y +A+DCY I NV+ D N ++A +A
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI--NVIEDEYNKDVWAAKA 83
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 27 KESAAIELKEKGNEYVKKGKKH-----YSDAIDCY--TRAINQNVLSDSENSVLYANRAH 79
K +A ++KE+GNE+ KK + + Y +A+D + T + +L D + ++
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI----EIS 89
Query: 80 VNLLLG-------NYRRAFTDAEEALKLCPTNVKVV 108
NL L +Y +A A + LK+ NVK +
Sbjct: 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL 125
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 52 AIDCYTRAINQN-VLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102
A+ CYTRAI N +D+ ++N A ++ GN A ALKL P
Sbjct: 96 ALQCYTRAIQINPAFADA-----HSNLASIHKDSGNIPEAIASYRTALKLKP 142
>pdb|3PAY|A Chain A, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|B Chain B, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|C Chain C, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|D Chain D, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
Length = 314
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93
E+V Y+DA + ++++ V DS++ +L+ V L+G R + TD
Sbjct: 18 EFVFDYNXEYADAFNPQVKSVDVLVF-DSDDKLLFTKSVKVAALVGGNRXSLTD 70
>pdb|4A42|A Chain A, Cpgh89cbm32-6 Produced By Clostridium Perfringens
pdb|4A42|B Chain B, Cpgh89cbm32-6 Produced By Clostridium Perfringens
Length = 149
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 2 ALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61
LW+ P E EK+ ++ K+ +AI++ KGN +K + +D + +T+ ++
Sbjct: 53 TLWV-----PGQEEEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISNDGTE-WTKIVD 106
Query: 62 QNVLSDSENSVLYAN 76
+N ++ EN +Y+N
Sbjct: 107 EN--NNEENKAVYSN 119
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 255 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 291
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 236 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 272
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 241 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 277
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 241 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 277
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 236 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 272
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
Y K GKK I T A + +L+ E S++Y+ R
Sbjct: 237 YTKMGKKALLAKISDQTEAEQERILARYEESIIYSRR 273
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 37 KGNEYVKKGKKHYSDAIDCYTRAIN 61
KG + +++GK S+A +C+TR+IN
Sbjct: 102 KGKQLLREGK--VSEARECFTRSIN 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,313,608
Number of Sequences: 62578
Number of extensions: 119412
Number of successful extensions: 297
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 51
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)