Query 033440
Match_columns 119
No_of_seqs 122 out of 1820
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.7 1.2E-17 2.5E-22 116.6 8.5 86 27-118 77-162 (304)
2 PRK15359 type III secretion sy 99.7 1E-15 2.2E-20 98.4 10.7 96 14-115 41-136 (144)
3 KOG0548 Molecular co-chaperone 99.7 5.7E-16 1.2E-20 114.7 10.6 96 15-116 342-437 (539)
4 PF13414 TPR_11: TPR repeat; P 99.6 2.6E-15 5.6E-20 84.8 8.9 67 30-102 2-69 (69)
5 KOG0547 Translocase of outer m 99.6 5.5E-16 1.2E-20 114.2 7.6 83 28-116 112-194 (606)
6 PRK15359 type III secretion sy 99.6 1.2E-14 2.5E-19 93.5 11.1 91 18-117 14-104 (144)
7 PRK15363 pathogenicity island 99.5 1.1E-13 2.4E-18 89.5 9.7 92 20-117 23-115 (157)
8 TIGR02552 LcrH_SycD type III s 99.5 2E-13 4.3E-18 86.0 9.7 91 19-115 5-95 (135)
9 PRK10370 formate-dependent nit 99.5 2E-13 4.4E-18 92.0 9.6 99 13-117 55-156 (198)
10 KOG4234 TPR repeat-containing 99.5 1.7E-13 3.6E-18 91.8 8.5 87 28-116 92-179 (271)
11 PLN03088 SGT1, suppressor of 99.5 3.6E-13 7.8E-18 98.0 11.1 96 13-114 18-113 (356)
12 PF13432 TPR_16: Tetratricopep 99.5 4.1E-13 8.9E-18 74.9 8.8 65 35-105 1-65 (65)
13 KOG0551 Hsp90 co-chaperone CNS 99.5 2.9E-13 6.3E-18 96.1 9.2 113 3-117 47-165 (390)
14 PRK11189 lipoprotein NlpI; Pro 99.5 1E-12 2.2E-17 93.4 11.4 97 14-116 43-143 (296)
15 KOG0553 TPR repeat-containing 99.5 6E-13 1.3E-17 93.3 9.4 93 15-113 99-191 (304)
16 KOG0543 FKBP-type peptidyl-pro 99.5 4.7E-13 1E-17 96.9 8.6 86 30-117 207-303 (397)
17 KOG0550 Molecular chaperone (D 99.4 2.8E-13 6.2E-18 98.4 7.0 88 27-116 245-332 (486)
18 PLN03088 SGT1, suppressor of 99.4 9.2E-13 2E-17 95.9 9.2 79 33-117 4-82 (356)
19 TIGR00990 3a0801s09 mitochondr 99.4 1.8E-12 3.9E-17 99.9 10.3 95 15-115 349-443 (615)
20 PRK11189 lipoprotein NlpI; Pro 99.4 4.2E-12 9.2E-17 90.2 11.2 87 14-106 81-167 (296)
21 TIGR02552 LcrH_SycD type III s 99.4 5.9E-12 1.3E-16 79.2 10.4 89 14-108 34-122 (135)
22 PRK15363 pathogenicity island 99.4 8.7E-12 1.9E-16 80.7 10.4 84 14-103 52-135 (157)
23 PRK12370 invasion protein regu 99.4 3.5E-12 7.6E-17 97.4 9.9 95 13-113 320-414 (553)
24 PF13371 TPR_9: Tetratricopept 99.4 6.1E-12 1.3E-16 71.5 8.3 70 38-113 2-71 (73)
25 KOG4648 Uncharacterized conser 99.4 7.7E-13 1.7E-17 94.9 5.4 80 30-115 96-175 (536)
26 KOG4626 O-linked N-acetylgluco 99.4 2.9E-12 6.3E-17 97.4 8.6 94 15-114 406-499 (966)
27 TIGR00990 3a0801s09 mitochondr 99.4 4.8E-12 1E-16 97.6 10.1 99 13-117 381-479 (615)
28 KOG0548 Molecular co-chaperone 99.3 2.2E-12 4.7E-17 96.0 6.4 79 32-116 3-81 (539)
29 KOG4626 O-linked N-acetylgluco 99.3 1.2E-11 2.6E-16 94.1 9.2 95 15-115 372-466 (966)
30 PF14559 TPR_19: Tetratricopep 99.3 8.8E-12 1.9E-16 69.9 6.5 66 42-113 2-67 (68)
31 PRK12370 invasion protein regu 99.3 1.7E-11 3.8E-16 93.6 10.1 101 13-117 277-384 (553)
32 PRK09782 bacteriophage N4 rece 99.3 2.9E-11 6.3E-16 97.3 10.7 96 14-116 593-688 (987)
33 KOG4642 Chaperone-dependent E3 99.3 4.1E-12 9E-17 86.9 5.0 82 30-117 9-90 (284)
34 KOG0547 Translocase of outer m 99.3 9.5E-12 2.1E-16 92.2 6.4 97 15-117 344-440 (606)
35 PRK15179 Vi polysaccharide bio 99.3 5.9E-11 1.3E-15 92.6 10.3 98 13-116 102-199 (694)
36 COG3063 PilF Tfp pilus assembl 99.3 3E-11 6.6E-16 82.2 7.4 98 15-116 87-184 (250)
37 KOG1155 Anaphase-promoting com 99.2 1.1E-10 2.3E-15 86.2 10.6 100 14-115 347-476 (559)
38 PRK09782 bacteriophage N4 rece 99.2 3.3E-11 7.1E-16 97.1 8.6 97 13-115 625-721 (987)
39 PLN02789 farnesyltranstransfer 99.2 1.2E-10 2.6E-15 83.7 10.3 96 14-115 89-186 (320)
40 KOG0545 Aryl-hydrocarbon recep 99.2 4.9E-11 1.1E-15 82.2 7.8 85 30-117 177-276 (329)
41 PRK02603 photosystem I assembl 99.2 1.6E-10 3.5E-15 76.0 9.6 87 27-116 31-117 (172)
42 PF12895 Apc3: Anaphase-promot 99.2 1.4E-10 3.1E-15 67.8 8.0 77 14-97 6-84 (84)
43 PF13424 TPR_12: Tetratricopep 99.2 1.6E-10 3.4E-15 66.5 8.0 72 28-101 2-76 (78)
44 KOG1155 Anaphase-promoting com 99.2 1.2E-10 2.7E-15 85.9 9.2 87 23-115 322-408 (559)
45 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 7.4E-11 1.6E-15 87.2 7.8 70 26-101 70-142 (453)
46 KOG1126 DNA-binding cell divis 99.2 2E-11 4.4E-16 92.6 4.9 91 22-118 412-502 (638)
47 PRK10370 formate-dependent nit 99.2 2.8E-10 6.1E-15 76.8 9.4 87 13-105 89-178 (198)
48 cd00189 TPR Tetratricopeptide 99.2 2.6E-10 5.6E-15 65.4 7.8 75 34-114 3-77 (100)
49 PRK15174 Vi polysaccharide exp 99.2 3.2E-10 6.9E-15 88.3 10.2 94 16-115 269-362 (656)
50 TIGR02521 type_IV_pilW type IV 99.2 5.2E-10 1.1E-14 74.6 9.8 78 15-98 49-126 (234)
51 TIGR02521 type_IV_pilW type IV 99.2 6.6E-10 1.4E-14 74.1 10.3 98 15-116 83-180 (234)
52 KOG1125 TPR repeat-containing 99.2 6.8E-11 1.5E-15 88.8 5.9 88 25-118 422-511 (579)
53 PLN02789 farnesyltranstransfer 99.1 1.1E-09 2.4E-14 78.8 11.8 100 12-116 52-153 (320)
54 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.6E-09 3.4E-14 66.2 11.0 90 14-109 19-114 (119)
55 KOG1126 DNA-binding cell divis 99.1 1.4E-10 2.9E-15 88.2 7.3 99 13-117 471-569 (638)
56 PRK15174 Vi polysaccharide exp 99.1 3.4E-10 7.4E-15 88.2 9.7 97 14-116 229-329 (656)
57 CHL00033 ycf3 photosystem I as 99.1 9.7E-10 2.1E-14 72.0 10.3 86 28-116 32-117 (168)
58 COG5010 TadD Flp pilus assembl 99.1 4.1E-10 9E-15 77.7 8.4 93 18-116 87-179 (257)
59 TIGR02795 tol_pal_ybgF tol-pal 99.1 8.6E-10 1.9E-14 67.4 8.6 80 31-116 2-87 (119)
60 cd00189 TPR Tetratricopeptide 99.1 1.6E-09 3.5E-14 62.0 9.2 85 13-103 16-100 (100)
61 KOG0624 dsRNA-activated protei 99.1 4.4E-10 9.6E-15 80.8 7.8 88 25-118 32-119 (504)
62 PF13429 TPR_15: Tetratricopep 99.1 6.6E-10 1.4E-14 78.1 7.7 86 29-116 144-259 (280)
63 COG3063 PilF Tfp pilus assembl 99.1 1.3E-09 2.9E-14 74.3 8.6 79 31-115 35-113 (250)
64 TIGR03302 OM_YfiO outer membra 99.1 8.3E-10 1.8E-14 75.5 7.6 85 27-117 29-119 (235)
65 PRK15331 chaperone protein Sic 99.1 1E-09 2.3E-14 71.5 7.5 90 22-117 28-117 (165)
66 COG4235 Cytochrome c biogenesi 99.0 2.5E-09 5.3E-14 75.3 9.4 98 14-117 139-239 (287)
67 PRK11447 cellulose synthase su 99.0 1.6E-09 3.6E-14 88.8 9.7 97 13-115 285-395 (1157)
68 KOG0376 Serine-threonine phosp 99.0 8E-11 1.7E-15 87.0 1.6 81 31-117 4-84 (476)
69 PRK11447 cellulose synthase su 99.0 2.4E-09 5.2E-14 87.9 10.3 99 13-117 367-507 (1157)
70 KOG1125 TPR repeat-containing 99.0 7.8E-10 1.7E-14 83.2 6.5 85 13-103 446-530 (579)
71 TIGR02917 PEP_TPR_lipo putativ 99.0 3.6E-09 7.9E-14 82.6 9.8 96 14-115 142-237 (899)
72 PF12895 Apc3: Anaphase-promot 99.0 4.6E-10 9.9E-15 65.6 3.5 65 48-117 4-70 (84)
73 KOG0543 FKBP-type peptidyl-pro 99.0 9.5E-09 2.1E-13 74.9 11.0 78 31-114 257-334 (397)
74 TIGR02917 PEP_TPR_lipo putativ 99.0 4.8E-09 1E-13 81.9 10.1 95 15-115 585-679 (899)
75 PRK10049 pgaA outer membrane p 99.0 5.1E-09 1.1E-13 82.9 10.2 95 14-115 66-160 (765)
76 PRK10803 tol-pal system protei 99.0 1.3E-08 2.8E-13 71.5 11.0 91 15-108 161-254 (263)
77 TIGR03302 OM_YfiO outer membra 99.0 7.5E-09 1.6E-13 70.8 9.2 89 14-108 50-152 (235)
78 PRK02603 photosystem I assembl 99.0 1.9E-08 4.1E-13 66.2 10.7 86 14-105 52-154 (172)
79 PRK15179 Vi polysaccharide bio 98.9 9.3E-09 2E-13 80.5 10.2 91 20-116 75-165 (694)
80 PF13414 TPR_11: TPR repeat; P 98.9 1.3E-09 2.9E-14 61.1 3.8 49 69-117 1-49 (69)
81 KOG0624 dsRNA-activated protei 98.9 1.4E-08 3E-13 73.3 9.4 101 15-117 90-235 (504)
82 COG4783 Putative Zn-dependent 98.9 1E-08 2.2E-13 76.1 8.9 99 13-117 322-420 (484)
83 PRK11788 tetratricopeptide rep 98.9 1.5E-08 3.3E-13 73.7 9.6 102 13-116 51-152 (389)
84 PRK11788 tetratricopeptide rep 98.9 2E-08 4.3E-13 73.1 10.2 94 16-115 126-224 (389)
85 PRK10049 pgaA outer membrane p 98.9 1.3E-08 2.9E-13 80.5 9.9 96 14-116 32-127 (765)
86 PF13512 TPR_18: Tetratricopep 98.9 1.6E-08 3.5E-13 64.6 8.4 85 31-118 10-97 (142)
87 KOG3060 Uncharacterized conser 98.9 3.3E-08 7.2E-13 68.4 10.0 93 15-113 138-233 (289)
88 CHL00033 ycf3 photosystem I as 98.9 5.7E-08 1.2E-12 63.6 10.8 87 13-105 51-154 (168)
89 PF13525 YfiO: Outer membrane 98.9 2.3E-08 4.9E-13 67.6 9.0 85 30-117 4-91 (203)
90 PRK10866 outer membrane biogen 98.9 4.4E-08 9.6E-13 68.0 10.2 80 30-115 31-116 (243)
91 KOG1173 Anaphase-promoting com 98.8 7.7E-09 1.7E-13 77.9 6.5 95 19-115 402-499 (611)
92 KOG4162 Predicted calmodulin-b 98.8 3E-08 6.5E-13 76.9 9.7 99 13-117 666-766 (799)
93 COG5010 TadD Flp pilus assembl 98.8 3.5E-08 7.5E-13 68.3 8.9 95 15-115 118-212 (257)
94 PF13428 TPR_14: Tetratricopep 98.8 2.2E-08 4.8E-13 51.6 5.9 44 71-114 1-44 (44)
95 KOG4555 TPR repeat-containing 98.8 6.4E-08 1.4E-12 61.3 8.9 80 30-115 42-125 (175)
96 KOG0550 Molecular chaperone (D 98.8 3.8E-09 8.2E-14 77.3 3.9 83 29-117 47-129 (486)
97 KOG4234 TPR repeat-containing 98.8 1.1E-07 2.4E-12 64.2 10.4 90 17-112 115-209 (271)
98 PF00515 TPR_1: Tetratricopept 98.8 1.9E-08 4.1E-13 48.8 4.4 34 71-104 1-34 (34)
99 KOG2076 RNA polymerase III tra 98.8 1.1E-07 2.3E-12 74.9 10.4 96 15-116 157-252 (895)
100 PRK11906 transcriptional regul 98.8 7.2E-08 1.6E-12 71.7 8.9 89 13-107 320-408 (458)
101 KOG1173 Anaphase-promoting com 98.7 1.5E-07 3.3E-12 71.1 9.6 75 32-112 456-530 (611)
102 PF13429 TPR_15: Tetratricopep 98.7 3.7E-08 8.1E-13 69.2 6.1 97 15-116 95-191 (280)
103 KOG2002 TPR-containing nuclear 98.7 6.8E-08 1.5E-12 76.6 8.0 98 13-115 146-243 (1018)
104 PRK10803 tol-pal system protei 98.7 2E-07 4.3E-12 65.5 9.1 80 31-116 142-228 (263)
105 PRK15331 chaperone protein Sic 98.7 2.4E-07 5.2E-12 60.5 8.7 85 14-105 54-138 (165)
106 PRK10153 DNA-binding transcrip 98.7 3.5E-07 7.5E-12 69.8 10.6 76 27-109 416-491 (517)
107 PF07719 TPR_2: Tetratricopept 98.7 9.5E-08 2.1E-12 46.1 5.0 34 71-104 1-34 (34)
108 PF12688 TPR_5: Tetratrico pep 98.7 3.6E-07 7.9E-12 57.0 8.6 68 33-103 3-70 (120)
109 PF06552 TOM20_plant: Plant sp 98.6 8.9E-07 1.9E-11 58.6 10.0 91 15-109 9-118 (186)
110 PF09976 TPR_21: Tetratricopep 98.6 5E-07 1.1E-11 57.9 8.8 93 18-117 32-130 (145)
111 KOG3060 Uncharacterized conser 98.6 6.2E-07 1.3E-11 62.3 9.2 97 14-116 103-199 (289)
112 COG4785 NlpI Lipoprotein NlpI, 98.6 3.1E-07 6.7E-12 62.8 7.4 84 27-116 61-144 (297)
113 cd05804 StaR_like StaR_like; a 98.6 2.4E-07 5.3E-12 66.7 7.4 85 25-115 108-196 (355)
114 KOG1308 Hsp70-interacting prot 98.6 1.1E-08 2.3E-13 73.3 0.1 83 27-115 110-192 (377)
115 cd05804 StaR_like StaR_like; a 98.6 3.9E-07 8.4E-12 65.6 8.2 51 67-117 110-160 (355)
116 KOG2076 RNA polymerase III tra 98.6 3.9E-07 8.4E-12 71.8 8.5 85 28-117 411-495 (895)
117 PRK11906 transcriptional regul 98.5 6.2E-07 1.4E-11 66.8 8.7 100 12-115 273-382 (458)
118 PF13432 TPR_16: Tetratricopep 98.5 2.7E-07 5.9E-12 51.0 5.3 53 13-71 13-65 (65)
119 PRK14574 hmsH outer membrane p 98.5 9.3E-07 2E-11 70.6 10.1 95 15-115 52-146 (822)
120 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.7E-07 3.7E-12 69.6 5.5 52 66-117 70-124 (453)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.5E-06 3.2E-11 64.3 10.0 94 14-116 186-279 (395)
122 PRK14720 transcript cleavage f 98.5 5.1E-07 1.1E-11 72.3 8.1 100 13-116 47-161 (906)
123 PF13431 TPR_17: Tetratricopep 98.5 1.7E-07 3.6E-12 45.7 3.3 34 55-92 1-34 (34)
124 KOG4648 Uncharacterized conser 98.5 5.5E-07 1.2E-11 65.2 6.9 89 14-108 114-202 (536)
125 PRK10153 DNA-binding transcrip 98.5 1.5E-06 3.1E-11 66.4 8.8 101 13-116 358-464 (517)
126 KOG1128 Uncharacterized conser 98.4 4E-07 8.6E-12 70.6 5.6 81 30-116 484-564 (777)
127 KOG2002 TPR-containing nuclear 98.4 1.2E-06 2.6E-11 69.7 8.2 81 29-115 305-386 (1018)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.9E-06 4.1E-11 63.7 8.7 77 15-97 218-294 (395)
129 KOG2003 TPR repeat-containing 98.4 2.5E-07 5.4E-12 69.1 4.1 71 20-96 479-549 (840)
130 PF13371 TPR_9: Tetratricopept 98.4 1.6E-06 3.4E-11 48.9 6.6 60 13-78 11-70 (73)
131 KOG0376 Serine-threonine phosp 98.4 2E-07 4.2E-12 69.4 3.4 94 14-113 21-114 (476)
132 COG4785 NlpI Lipoprotein NlpI, 98.4 5E-07 1.1E-11 61.8 5.0 84 16-105 84-167 (297)
133 PF04733 Coatomer_E: Coatomer 98.4 1E-06 2.2E-11 62.8 6.8 92 19-114 153-244 (290)
134 KOG1129 TPR repeat-containing 98.4 3.8E-07 8.1E-12 65.7 4.6 95 15-115 308-405 (478)
135 KOG4162 Predicted calmodulin-b 98.4 1.6E-06 3.4E-11 67.6 8.1 86 14-105 701-788 (799)
136 KOG4555 TPR repeat-containing 98.4 8.1E-06 1.8E-10 51.9 9.6 91 13-105 59-149 (175)
137 KOG1156 N-terminal acetyltrans 98.4 1.8E-06 3.9E-11 66.4 7.9 95 15-115 25-119 (700)
138 PF13512 TPR_18: Tetratricopep 98.4 1.2E-05 2.5E-10 51.5 10.0 89 16-107 29-135 (142)
139 PF09976 TPR_21: Tetratricopep 98.3 5.8E-06 1.3E-10 52.9 8.4 79 13-98 64-145 (145)
140 PF13428 TPR_14: Tetratricopep 98.3 1.7E-06 3.6E-11 44.5 4.7 42 32-79 2-43 (44)
141 PF14559 TPR_19: Tetratricopep 98.3 2.5E-06 5.4E-11 47.4 5.6 61 13-79 7-67 (68)
142 COG4783 Putative Zn-dependent 98.3 3.9E-06 8.4E-11 62.7 7.9 84 28-117 303-386 (484)
143 PF00515 TPR_1: Tetratricopept 98.3 2.5E-06 5.5E-11 41.1 4.8 34 31-70 1-34 (34)
144 COG4105 ComL DNA uptake lipopr 98.3 1.8E-05 3.9E-10 55.1 10.4 86 30-118 33-121 (254)
145 KOG1128 Uncharacterized conser 98.3 3.2E-06 6.8E-11 65.8 6.8 91 14-110 502-592 (777)
146 PF13181 TPR_8: Tetratricopept 98.3 2.5E-06 5.4E-11 41.1 4.2 33 72-104 2-34 (34)
147 PRK10747 putative protoheme IX 98.3 9.5E-06 2.1E-10 60.0 9.2 82 13-101 310-391 (398)
148 TIGR00540 hemY_coli hemY prote 98.3 1.1E-05 2.5E-10 59.8 9.6 96 15-116 102-198 (409)
149 KOG1174 Anaphase-promoting com 98.3 1.2E-05 2.7E-10 59.5 9.4 93 12-111 419-511 (564)
150 PRK14574 hmsH outer membrane p 98.2 9.4E-06 2E-10 65.0 9.4 88 13-106 84-171 (822)
151 PRK10866 outer membrane biogen 98.2 2E-05 4.3E-10 54.8 10.0 88 15-105 50-158 (243)
152 PF07719 TPR_2: Tetratricopept 98.2 4.1E-06 8.8E-11 40.2 4.7 34 31-70 1-34 (34)
153 PF12688 TPR_5: Tetratrico pep 98.2 3.4E-05 7.4E-10 48.2 9.9 82 13-100 17-104 (120)
154 TIGR00540 hemY_coli hemY prote 98.2 1.5E-05 3.3E-10 59.1 9.3 79 15-100 317-399 (409)
155 COG4235 Cytochrome c biogenesi 98.2 2.2E-05 4.7E-10 55.6 9.4 86 15-104 174-260 (287)
156 KOG1129 TPR repeat-containing 98.2 5.1E-06 1.1E-10 60.0 6.2 98 13-113 340-437 (478)
157 KOG2003 TPR repeat-containing 98.2 2.5E-05 5.4E-10 58.7 9.8 97 14-116 507-603 (840)
158 KOG1840 Kinesin light chain [C 98.2 3.6E-05 7.8E-10 58.7 10.3 85 15-101 217-313 (508)
159 KOG4642 Chaperone-dependent E3 98.2 1.2E-05 2.6E-10 55.6 7.0 80 15-100 28-107 (284)
160 PF12569 NARP1: NMDA receptor- 98.1 3E-05 6.6E-10 59.3 9.8 80 30-115 3-82 (517)
161 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 1.6E-05 3.4E-10 42.6 5.7 40 72-111 2-41 (53)
162 PRK10747 putative protoheme IX 98.1 4.8E-05 1E-09 56.3 10.2 79 32-116 118-198 (398)
163 PRK10941 hypothetical protein; 98.1 6.4E-05 1.4E-09 53.1 10.0 77 31-113 181-257 (269)
164 COG1729 Uncharacterized protei 98.1 5.8E-05 1.3E-09 52.9 9.0 79 34-115 144-225 (262)
165 COG2956 Predicted N-acetylgluc 98.0 5E-05 1.1E-09 54.7 8.7 85 13-103 196-281 (389)
166 PF13525 YfiO: Outer membrane 98.0 9.2E-05 2E-09 50.0 9.6 90 14-106 22-125 (203)
167 PF06552 TOM20_plant: Plant sp 98.0 2.2E-05 4.9E-10 52.0 6.3 65 48-116 6-80 (186)
168 PF04733 Coatomer_E: Coatomer 98.0 5.2E-05 1.1E-09 54.1 8.5 89 13-107 183-272 (290)
169 PF12569 NARP1: NMDA receptor- 98.0 6.9E-05 1.5E-09 57.4 9.3 69 31-105 194-262 (517)
170 KOG0545 Aryl-hydrocarbon recep 98.0 0.0001 2.2E-09 51.4 9.2 73 30-108 229-301 (329)
171 KOG1840 Kinesin light chain [C 98.0 3.6E-05 7.8E-10 58.7 7.6 91 25-117 193-295 (508)
172 COG2956 Predicted N-acetylgluc 98.0 0.00011 2.3E-09 53.1 9.2 96 14-115 158-259 (389)
173 KOG1156 N-terminal acetyltrans 98.0 4.4E-05 9.5E-10 59.0 7.7 96 14-115 58-153 (700)
174 KOG1308 Hsp70-interacting prot 98.0 1.6E-06 3.4E-11 62.4 0.0 84 13-102 130-213 (377)
175 KOG1310 WD40 repeat protein [G 98.0 2.3E-05 5E-10 59.6 6.1 85 26-116 369-456 (758)
176 COG1729 Uncharacterized protei 98.0 0.00015 3.3E-09 50.8 9.7 80 30-112 177-256 (262)
177 KOG1127 TPR repeat-containing 97.9 5.6E-05 1.2E-09 60.9 8.0 73 38-116 9-82 (1238)
178 smart00028 TPR Tetratricopepti 97.9 4.2E-05 9.1E-10 34.9 4.1 32 72-103 2-33 (34)
179 PF13174 TPR_6: Tetratricopept 97.9 4.7E-05 1E-09 36.0 4.3 32 73-104 2-33 (33)
180 KOG1127 TPR repeat-containing 97.9 5.3E-05 1.2E-09 61.1 6.8 81 16-102 581-661 (1238)
181 PF03704 BTAD: Bacterial trans 97.9 0.00072 1.6E-08 43.0 10.9 68 26-99 57-124 (146)
182 PF13424 TPR_12: Tetratricopep 97.8 1.4E-05 2.9E-10 45.6 1.9 49 68-116 2-57 (78)
183 KOG3824 Huntingtin interacting 97.8 0.0002 4.4E-09 51.6 7.8 79 30-114 115-193 (472)
184 PRK14720 transcript cleavage f 97.8 0.00036 7.8E-09 56.4 10.1 77 17-100 102-178 (906)
185 KOG1174 Anaphase-promoting com 97.8 0.0003 6.4E-09 52.4 8.8 90 17-112 320-409 (564)
186 KOG0495 HAT repeat protein [RN 97.7 0.00025 5.5E-09 55.3 8.6 89 15-109 669-757 (913)
187 KOG3081 Vesicle coat complex C 97.7 0.0014 3E-08 46.2 11.0 77 31-111 169-247 (299)
188 PF13181 TPR_8: Tetratricopept 97.7 9.5E-05 2.1E-09 35.3 4.0 33 31-69 1-33 (34)
189 PF14938 SNAP: Soluble NSF att 97.7 0.00036 7.9E-09 49.4 8.5 85 15-101 92-185 (282)
190 PF10300 DUF3808: Protein of u 97.7 0.00031 6.8E-09 53.2 8.5 94 12-108 248-341 (468)
191 PF13431 TPR_17: Tetratricopep 97.7 3.1E-05 6.8E-10 37.6 2.0 32 20-53 2-33 (34)
192 KOG0495 HAT repeat protein [RN 97.7 0.00054 1.2E-08 53.6 9.5 95 13-114 634-728 (913)
193 PF13176 TPR_7: Tetratricopept 97.7 0.00012 2.6E-09 35.8 4.1 24 74-97 2-25 (36)
194 PF13176 TPR_7: Tetratricopept 97.6 0.00016 3.4E-09 35.4 4.0 28 33-62 1-28 (36)
195 KOG2796 Uncharacterized conser 97.6 0.00014 3.1E-09 51.3 5.1 69 30-104 251-319 (366)
196 KOG4340 Uncharacterized conser 97.6 0.00011 2.3E-09 52.8 4.5 66 29-100 142-207 (459)
197 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00047 1E-08 49.9 7.5 71 30-106 118-188 (390)
198 COG4976 Predicted methyltransf 97.5 0.00019 4.1E-09 49.6 4.9 58 41-104 5-62 (287)
199 COG3071 HemY Uncharacterized e 97.5 0.0013 2.9E-08 48.3 8.9 79 15-100 312-390 (400)
200 PF03704 BTAD: Bacterial trans 97.4 0.0032 7E-08 39.9 9.5 81 34-116 9-107 (146)
201 KOG2471 TPR repeat-containing 97.4 0.00012 2.6E-09 55.5 2.8 84 31-116 283-380 (696)
202 PF13174 TPR_6: Tetratricopept 97.4 0.00068 1.5E-08 31.8 4.5 32 32-69 1-32 (33)
203 KOG3364 Membrane protein invol 97.3 0.0078 1.7E-07 38.4 9.7 78 31-111 32-111 (149)
204 KOG3785 Uncharacterized conser 97.3 0.0052 1.1E-07 45.3 10.0 77 35-117 155-231 (557)
205 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0088 1.9E-07 38.2 10.4 77 30-112 166-243 (291)
206 COG4700 Uncharacterized protei 97.3 0.0058 1.2E-07 41.4 9.3 85 25-115 84-170 (251)
207 PF12862 Apc5: Anaphase-promot 97.2 0.0029 6.4E-08 37.6 7.1 59 41-101 8-71 (94)
208 PF14561 TPR_20: Tetratricopep 97.2 0.0077 1.7E-07 35.6 8.7 76 15-96 6-83 (90)
209 KOG2053 Mitochondrial inherita 97.2 0.0034 7.4E-08 50.4 9.0 93 14-113 26-118 (932)
210 PF10579 Rapsyn_N: Rapsyn N-te 97.2 0.0079 1.7E-07 34.7 8.2 69 29-100 4-72 (80)
211 KOG3785 Uncharacterized conser 97.2 0.00076 1.7E-08 49.6 4.8 60 30-97 58-117 (557)
212 KOG2610 Uncharacterized conser 97.2 0.0041 9E-08 45.5 8.4 95 16-115 122-219 (491)
213 KOG4814 Uncharacterized conser 97.2 0.0039 8.4E-08 48.8 8.7 80 30-111 353-434 (872)
214 PF04184 ST7: ST7 protein; In 97.2 0.0037 8.1E-08 47.5 8.5 100 13-116 184-306 (539)
215 KOG4151 Myosin assembly protei 97.2 0.00067 1.5E-08 53.5 4.7 89 26-116 48-138 (748)
216 KOG4507 Uncharacterized conser 97.2 0.0027 5.8E-08 49.4 7.6 91 15-111 625-716 (886)
217 PF09613 HrpB1_HrpK: Bacterial 97.1 0.013 2.8E-07 38.4 9.5 84 13-103 26-109 (160)
218 KOG1130 Predicted G-alpha GTPa 97.1 0.00072 1.6E-08 50.5 3.9 100 16-117 36-147 (639)
219 smart00028 TPR Tetratricopepti 97.1 0.0013 2.9E-08 29.5 3.7 29 32-62 2-30 (34)
220 KOG1130 Predicted G-alpha GTPa 97.1 0.00049 1.1E-08 51.4 2.9 69 30-100 194-264 (639)
221 PF14561 TPR_20: Tetratricopep 97.0 0.0042 9.2E-08 36.8 6.3 50 51-104 6-55 (90)
222 COG0457 NrfG FOG: TPR repeat [ 97.0 0.011 2.4E-07 37.7 8.8 71 26-102 90-161 (291)
223 COG2912 Uncharacterized conser 97.0 0.0082 1.8E-07 42.4 8.1 74 34-113 184-257 (269)
224 PF13374 TPR_10: Tetratricopep 96.9 0.0033 7.2E-08 30.9 4.5 29 72-100 3-31 (42)
225 PF09613 HrpB1_HrpK: Bacterial 96.9 0.0088 1.9E-07 39.1 7.3 83 28-116 7-89 (160)
226 PF14938 SNAP: Soluble NSF att 96.9 0.036 7.8E-07 39.3 11.1 90 13-104 131-229 (282)
227 PF15015 NYD-SP12_N: Spermatog 96.9 0.0055 1.2E-07 45.9 6.9 77 37-115 182-272 (569)
228 KOG2376 Signal recognition par 96.8 0.0045 9.8E-08 47.8 6.4 65 35-108 83-147 (652)
229 KOG2796 Uncharacterized conser 96.8 0.0069 1.5E-07 43.0 6.5 97 17-115 197-296 (366)
230 KOG4340 Uncharacterized conser 96.8 0.0045 9.8E-08 44.7 5.6 74 19-98 32-105 (459)
231 KOG2376 Signal recognition par 96.7 0.023 5E-07 44.1 9.4 93 13-115 28-120 (652)
232 PF10602 RPN7: 26S proteasome 96.7 0.028 6E-07 37.3 8.9 71 27-100 32-102 (177)
233 PF04781 DUF627: Protein of un 96.7 0.014 3.1E-07 35.9 6.7 72 37-114 2-87 (111)
234 PF13374 TPR_10: Tetratricopep 96.7 0.0063 1.4E-07 29.9 4.4 31 31-63 2-32 (42)
235 KOG3081 Vesicle coat complex C 96.6 0.017 3.6E-07 40.9 7.4 73 28-106 204-277 (299)
236 KOG2396 HAT (Half-A-TPR) repea 96.6 0.038 8.2E-07 42.3 9.5 88 17-110 91-179 (568)
237 PF10516 SHNi-TPR: SHNi-TPR; 96.5 0.0069 1.5E-07 30.1 3.9 30 72-101 2-31 (38)
238 PF12968 DUF3856: Domain of Un 96.5 0.077 1.7E-06 33.3 8.9 68 31-100 7-84 (144)
239 TIGR02561 HrpB1_HrpK type III 96.4 0.059 1.3E-06 34.9 8.4 80 16-102 29-108 (153)
240 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.063 1.4E-06 28.6 6.8 41 33-79 3-43 (53)
241 COG3071 HemY Uncharacterized e 96.2 0.02 4.3E-07 42.4 6.0 48 67-115 324-371 (400)
242 PF07720 TPR_3: Tetratricopept 96.1 0.035 7.6E-07 27.1 5.0 32 73-104 3-36 (36)
243 PF04781 DUF627: Protein of un 96.0 0.097 2.1E-06 32.2 7.8 83 15-101 14-108 (111)
244 KOG0529 Protein geranylgeranyl 96.0 0.082 1.8E-06 39.5 8.7 100 12-115 90-193 (421)
245 PF12968 DUF3856: Domain of Un 96.0 0.13 2.8E-06 32.3 8.2 68 30-99 54-128 (144)
246 PF05843 Suf: Suppressor of fo 96.0 0.047 1E-06 38.7 7.2 85 15-104 19-103 (280)
247 PF08424 NRDE-2: NRDE-2, neces 96.0 0.34 7.4E-06 35.1 11.7 91 17-111 5-105 (321)
248 KOG0530 Protein farnesyltransf 95.9 0.068 1.5E-06 38.0 7.5 88 16-109 97-185 (318)
249 PF09986 DUF2225: Uncharacteri 95.8 0.28 6E-06 33.6 10.2 82 29-112 116-207 (214)
250 COG5191 Uncharacterized conser 95.7 0.02 4.2E-07 41.6 4.1 79 26-110 102-181 (435)
251 COG2976 Uncharacterized protei 95.7 0.12 2.6E-06 35.0 7.6 63 36-105 131-193 (207)
252 PLN03081 pentatricopeptide (PP 95.6 0.055 1.2E-06 42.9 6.9 60 33-98 496-555 (697)
253 COG4105 ComL DNA uptake lipopr 95.6 0.22 4.8E-06 35.0 9.0 88 15-105 52-150 (254)
254 TIGR02561 HrpB1_HrpK type III 95.6 0.064 1.4E-06 34.8 5.9 82 28-115 7-88 (153)
255 PF11207 DUF2989: Protein of u 95.5 0.06 1.3E-06 36.6 5.7 60 29-91 139-198 (203)
256 PF10255 Paf67: RNA polymerase 95.5 0.052 1.1E-06 40.6 5.9 61 36-99 127-192 (404)
257 KOG0530 Protein farnesyltransf 95.5 0.32 7E-06 34.6 9.4 95 12-111 58-153 (318)
258 PF10373 EST1_DNA_bind: Est1 D 95.4 0.064 1.4E-06 37.4 6.1 46 52-101 1-46 (278)
259 KOG1586 Protein required for f 95.4 0.39 8.5E-06 33.7 9.6 89 14-104 90-187 (288)
260 PF14863 Alkyl_sulf_dimr: Alky 95.4 0.12 2.6E-06 33.2 6.7 52 31-88 70-121 (141)
261 PF10300 DUF3808: Protein of u 95.4 0.18 3.9E-06 38.5 8.7 65 30-100 304-376 (468)
262 PLN03218 maturation of RBCL 1; 95.4 0.27 5.8E-06 41.3 10.2 11 48-58 594-604 (1060)
263 KOG1310 WD40 repeat protein [G 95.3 0.16 3.4E-06 39.5 8.0 84 15-102 392-476 (758)
264 PLN03081 pentatricopeptide (PP 95.2 0.11 2.5E-06 41.1 7.5 69 28-101 287-355 (697)
265 PRK10941 hypothetical protein; 95.2 0.11 2.3E-06 36.9 6.6 61 13-79 197-257 (269)
266 COG4700 Uncharacterized protei 95.2 0.22 4.9E-06 33.9 7.6 74 36-116 61-135 (251)
267 PF04910 Tcf25: Transcriptiona 95.1 0.28 6.1E-06 36.2 8.9 86 20-107 29-140 (360)
268 PF07721 TPR_4: Tetratricopept 95.1 0.043 9.4E-07 24.5 3.0 24 72-95 2-25 (26)
269 PLN03218 maturation of RBCL 1; 95.1 0.39 8.4E-06 40.3 10.3 67 31-100 542-608 (1060)
270 PF07079 DUF1347: Protein of u 95.0 0.13 2.8E-06 39.2 6.7 72 36-115 467-538 (549)
271 PF10516 SHNi-TPR: SHNi-TPR; 95.0 0.059 1.3E-06 26.7 3.4 29 32-62 2-30 (38)
272 KOG3824 Huntingtin interacting 94.9 0.036 7.8E-07 40.3 3.6 82 12-99 131-216 (472)
273 PLN03077 Protein ECB2; Provisi 94.9 0.19 4.1E-06 40.8 8.1 77 31-115 625-701 (857)
274 PF02259 FAT: FAT domain; Int 94.9 0.15 3.2E-06 36.6 6.7 85 30-116 183-303 (352)
275 KOG0546 HSP90 co-chaperone CPR 94.8 0.0088 1.9E-07 43.7 0.3 85 30-116 221-320 (372)
276 PF11817 Foie-gras_1: Foie gra 94.8 0.27 6E-06 34.2 7.7 64 33-98 180-245 (247)
277 PRK04841 transcriptional regul 94.8 0.43 9.3E-06 38.8 9.8 68 31-100 491-560 (903)
278 PRK04841 transcriptional regul 94.7 0.58 1.3E-05 38.0 10.4 69 31-101 531-603 (903)
279 COG3118 Thioredoxin domain-con 94.7 0.67 1.4E-05 33.4 9.4 85 15-101 152-266 (304)
280 PF04184 ST7: ST7 protein; In 94.6 0.48 1.1E-05 36.5 9.0 73 34-112 262-337 (539)
281 COG3629 DnrI DNA-binding trans 94.6 0.76 1.7E-05 32.9 9.6 67 27-99 149-215 (280)
282 PLN03077 Protein ECB2; Provisi 94.3 0.31 6.6E-06 39.7 7.9 66 27-99 654-719 (857)
283 KOG0529 Protein geranylgeranyl 94.2 1.1 2.3E-05 33.8 9.9 95 13-111 45-151 (421)
284 PF13281 DUF4071: Domain of un 94.2 0.68 1.5E-05 34.5 8.9 72 30-106 178-261 (374)
285 PF07720 TPR_3: Tetratricopept 94.1 0.3 6.4E-06 23.8 4.7 29 32-62 2-32 (36)
286 PF05843 Suf: Suppressor of fo 94.0 0.75 1.6E-05 32.6 8.6 73 33-111 3-76 (280)
287 KOG1915 Cell cycle control pro 94.0 1.3 2.9E-05 34.2 10.1 79 27-111 69-147 (677)
288 COG3118 Thioredoxin domain-con 94.0 0.81 1.7E-05 33.0 8.6 61 30-96 133-193 (304)
289 cd02682 MIT_AAA_Arch MIT: doma 93.8 0.55 1.2E-05 26.9 6.2 62 30-97 5-69 (75)
290 COG3914 Spy Predicted O-linked 93.8 1.1 2.3E-05 35.3 9.4 88 15-108 85-179 (620)
291 KOG1586 Protein required for f 93.6 0.47 1E-05 33.4 6.7 63 31-100 74-143 (288)
292 KOG2053 Mitochondrial inherita 92.9 0.84 1.8E-05 37.4 7.9 87 14-107 60-146 (932)
293 PF07721 TPR_4: Tetratricopept 92.5 0.21 4.5E-06 22.2 2.6 24 32-57 2-25 (26)
294 PF04212 MIT: MIT (microtubule 92.4 0.55 1.2E-05 26.0 4.8 31 30-62 4-34 (69)
295 COG4455 ImpE Protein of avirul 92.1 1 2.2E-05 31.5 6.5 60 40-105 10-69 (273)
296 KOG1464 COP9 signalosome, subu 91.5 0.89 1.9E-05 32.9 6.0 52 48-99 42-93 (440)
297 KOG1070 rRNA processing protei 91.4 3.1 6.8E-05 36.1 9.8 91 15-109 1548-1638(1710)
298 cd02681 MIT_calpain7_1 MIT: do 91.3 0.81 1.8E-05 26.2 4.7 31 30-62 5-35 (76)
299 KOG1550 Extracellular protein 91.2 1 2.2E-05 35.2 6.6 77 32-116 289-371 (552)
300 COG3947 Response regulator con 91.1 4.7 0.0001 29.4 9.3 59 32-96 280-338 (361)
301 KOG1550 Extracellular protein 91.0 3.7 8E-05 32.1 9.5 89 16-114 312-405 (552)
302 cd02683 MIT_1 MIT: domain cont 90.8 0.87 1.9E-05 26.1 4.6 31 30-62 5-35 (77)
303 TIGR03504 FimV_Cterm FimV C-te 90.8 0.67 1.5E-05 23.6 3.7 25 75-99 3-27 (44)
304 cd02680 MIT_calpain7_2 MIT: do 90.8 0.83 1.8E-05 26.1 4.4 32 30-63 5-36 (75)
305 smart00386 HAT HAT (Half-A-TPR 90.8 0.82 1.8E-05 20.5 3.8 26 86-111 2-27 (33)
306 COG4976 Predicted methyltransf 90.7 0.68 1.5E-05 32.5 4.6 46 15-62 13-58 (287)
307 KOG0546 HSP90 co-chaperone CPR 90.4 0.22 4.7E-06 36.7 2.2 67 36-108 280-346 (372)
308 PF15015 NYD-SP12_N: Spermatog 90.2 0.76 1.6E-05 34.9 4.9 57 35-97 232-288 (569)
309 KOG3783 Uncharacterized conser 90.1 0.95 2.1E-05 35.1 5.4 89 15-108 251-339 (546)
310 KOG2758 Translation initiation 90.1 4.8 0.0001 29.8 8.7 73 25-99 123-195 (432)
311 COG2976 Uncharacterized protei 90.1 3 6.5E-05 28.4 7.2 63 32-97 90-152 (207)
312 cd02682 MIT_AAA_Arch MIT: doma 89.9 2.1 4.6E-05 24.5 5.5 36 74-109 9-51 (75)
313 PF02259 FAT: FAT domain; Int 89.8 5.6 0.00012 28.4 9.7 71 30-104 251-342 (352)
314 KOG1585 Protein required for f 89.8 4.6 9.9E-05 28.8 8.2 52 48-99 86-138 (308)
315 COG2912 Uncharacterized conser 89.7 0.78 1.7E-05 32.6 4.4 61 13-79 197-257 (269)
316 cd02678 MIT_VPS4 MIT: domain c 89.6 1.3 2.8E-05 25.1 4.6 31 30-62 5-35 (75)
317 PRK13184 pknD serine/threonine 89.5 1.3 2.9E-05 36.8 6.2 54 48-106 534-587 (932)
318 KOG1941 Acetylcholine receptor 89.5 0.86 1.9E-05 34.1 4.6 65 35-101 126-192 (518)
319 PF13281 DUF4071: Domain of un 89.3 2.9 6.2E-05 31.2 7.3 80 36-118 146-230 (374)
320 KOG1070 rRNA processing protei 89.3 4.3 9.4E-05 35.3 8.9 98 18-117 1445-1576(1710)
321 KOG1915 Cell cycle control pro 89.0 6.6 0.00014 30.6 9.0 81 17-103 93-173 (677)
322 COG0790 FOG: TPR repeat, SEL1 88.9 6.2 0.00014 27.7 9.0 81 27-115 105-197 (292)
323 KOG2610 Uncharacterized conser 88.7 2.4 5.2E-05 31.6 6.4 50 41-96 185-234 (491)
324 PF14863 Alkyl_sulf_dimr: Alky 88.6 1.8 4E-05 27.7 5.2 44 72-115 71-114 (141)
325 KOG0686 COP9 signalosome, subu 88.3 3.9 8.4E-05 31.0 7.3 70 28-100 147-216 (466)
326 smart00745 MIT Microtubule Int 88.0 1.9 4.1E-05 24.3 4.6 30 31-62 8-37 (77)
327 cd02656 MIT MIT: domain contai 87.8 2 4.3E-05 24.1 4.6 30 31-62 6-35 (75)
328 KOG2396 HAT (Half-A-TPR) repea 87.8 4.5 9.8E-05 31.4 7.5 61 49-113 87-147 (568)
329 PF10373 EST1_DNA_bind: Est1 D 87.7 3 6.4E-05 28.9 6.4 61 17-83 2-62 (278)
330 cd02684 MIT_2 MIT: domain cont 87.6 2.1 4.5E-05 24.3 4.6 31 30-62 5-35 (75)
331 PF00244 14-3-3: 14-3-3 protei 87.2 7.5 0.00016 27.0 8.0 52 49-100 142-198 (236)
332 KOG2300 Uncharacterized conser 86.9 6.2 0.00013 30.8 7.8 99 6-105 18-123 (629)
333 COG3898 Uncharacterized membra 86.2 13 0.00028 28.4 9.0 91 23-116 180-274 (531)
334 COG5536 BET4 Protein prenyltra 86.0 1.4 3E-05 31.8 3.8 99 9-111 86-190 (328)
335 COG4941 Predicted RNA polymera 85.9 7.5 0.00016 28.9 7.5 93 15-112 314-406 (415)
336 PF10952 DUF2753: Protein of u 85.7 7 0.00015 24.8 7.2 63 33-97 3-76 (140)
337 PF04212 MIT: MIT (microtubule 85.7 3.2 7E-05 22.8 4.6 25 75-99 9-33 (69)
338 PF12854 PPR_1: PPR repeat 85.6 2.6 5.7E-05 19.8 4.0 27 70-96 6-32 (34)
339 COG3947 Response regulator con 85.4 1.9 4.2E-05 31.3 4.3 40 72-111 280-319 (361)
340 KOG2047 mRNA splicing factor [ 85.1 8.7 0.00019 31.0 8.0 87 14-102 494-581 (835)
341 KOG2471 TPR repeat-containing 84.8 2.6 5.7E-05 32.8 5.0 49 29-83 333-381 (696)
342 cd02677 MIT_SNX15 MIT: domain 84.6 3.5 7.7E-05 23.4 4.5 30 31-62 6-35 (75)
343 KOG4151 Myosin assembly protei 83.9 3.9 8.5E-05 33.1 5.8 76 28-107 88-163 (748)
344 KOG3364 Membrane protein invol 83.8 9.3 0.0002 24.7 6.7 56 15-76 53-110 (149)
345 KOG1941 Acetylcholine receptor 83.8 3.6 7.8E-05 31.0 5.3 66 33-100 164-235 (518)
346 cd02679 MIT_spastin MIT: domai 83.5 3.3 7.1E-05 23.9 4.0 30 31-62 8-37 (79)
347 KOG3807 Predicted membrane pro 83.4 17 0.00036 27.3 9.7 85 14-102 201-306 (556)
348 PF07219 HemY_N: HemY protein 82.9 8.2 0.00018 23.3 7.6 52 28-85 56-107 (108)
349 KOG1585 Protein required for f 82.6 15 0.00033 26.2 9.7 49 48-96 125-175 (308)
350 cd02677 MIT_SNX15 MIT: domain 82.4 3.2 6.9E-05 23.6 3.7 14 49-62 3-16 (75)
351 PRK15180 Vi polysaccharide bio 82.3 11 0.00024 29.6 7.4 45 48-96 304-348 (831)
352 KOG4507 Uncharacterized conser 82.1 3.3 7.2E-05 33.0 4.7 73 38-116 613-687 (886)
353 KOG4563 Cell cycle-regulated h 82.0 5.8 0.00012 29.6 5.7 63 28-92 38-104 (400)
354 PF01535 PPR: PPR repeat; Int 82.0 3.3 7.1E-05 18.2 3.1 24 76-99 5-28 (31)
355 PF11846 DUF3366: Domain of un 81.8 13 0.00027 24.7 7.1 49 51-104 129-177 (193)
356 PF06957 COPI_C: Coatomer (COP 81.3 19 0.00041 27.5 8.3 30 31-62 204-233 (422)
357 PF08631 SPO22: Meiosis protei 81.2 11 0.00023 26.7 6.8 57 42-100 4-65 (278)
358 PF13041 PPR_2: PPR repeat fam 80.7 5.7 0.00012 20.1 5.7 27 33-61 5-31 (50)
359 smart00101 14_3_3 14-3-3 homol 80.5 12 0.00026 26.3 6.7 51 49-99 144-199 (244)
360 COG3898 Uncharacterized membra 80.2 24 0.00052 27.0 8.4 46 15-62 247-292 (531)
361 PF09205 DUF1955: Domain of un 80.0 14 0.00029 24.0 7.4 49 48-100 101-149 (161)
362 KOG4814 Uncharacterized conser 79.9 21 0.00046 29.0 8.4 68 27-100 390-457 (872)
363 PF09670 Cas_Cas02710: CRISPR- 79.9 23 0.00049 26.5 8.8 66 30-100 130-198 (379)
364 COG2015 Alkyl sulfatase and re 79.8 13 0.00028 29.1 7.0 54 31-90 452-505 (655)
365 PF12862 Apc5: Anaphase-promot 79.6 9.9 0.00022 22.2 7.1 34 29-64 39-72 (94)
366 COG3914 Spy Predicted O-linked 79.4 14 0.00031 29.3 7.3 69 37-111 73-142 (620)
367 cd02681 MIT_calpain7_1 MIT: do 78.9 7.3 0.00016 22.2 4.4 24 76-99 11-34 (76)
368 KOG1914 mRNA cleavage and poly 78.6 16 0.00035 28.9 7.3 72 21-99 10-81 (656)
369 cd02679 MIT_spastin MIT: domai 78.3 6.2 0.00014 22.7 4.0 32 48-79 4-35 (79)
370 PHA02537 M terminase endonucle 77.9 8.7 0.00019 26.8 5.3 33 72-104 170-211 (230)
371 cd02683 MIT_1 MIT: domain cont 77.4 8.4 0.00018 22.0 4.4 19 87-105 29-47 (77)
372 COG3629 DnrI DNA-binding trans 76.5 18 0.00039 26.0 6.7 48 69-116 151-198 (280)
373 PF13041 PPR_2: PPR repeat fam 76.4 8.1 0.00018 19.5 5.2 40 71-110 3-43 (50)
374 PF02064 MAS20: MAS20 protein 75.9 10 0.00022 23.7 4.8 32 35-72 67-98 (121)
375 TIGR00756 PPR pentatricopeptid 75.2 6.2 0.00014 17.5 3.9 26 74-99 3-28 (35)
376 PF08424 NRDE-2: NRDE-2, neces 75.2 29 0.00063 25.2 9.6 81 14-100 48-131 (321)
377 KOG2581 26S proteasome regulat 75.0 26 0.00056 26.8 7.3 73 30-104 208-280 (493)
378 KOG0292 Vesicle coat complex C 74.5 53 0.0011 27.9 9.7 80 27-108 987-1121(1202)
379 smart00745 MIT Microtubule Int 74.4 11 0.00024 21.0 4.4 15 48-62 4-18 (77)
380 KOG0890 Protein kinase of the 72.8 13 0.00028 34.2 6.0 71 34-110 1452-1522(2382)
381 COG2909 MalT ATP-dependent tra 72.5 38 0.00082 28.3 8.2 66 33-100 460-526 (894)
382 KOG1839 Uncharacterized protei 71.2 4.2 9.2E-05 34.8 2.8 75 23-100 922-1002(1236)
383 KOG1839 Uncharacterized protei 70.3 13 0.00027 32.1 5.3 75 24-100 966-1044(1236)
384 cd02678 MIT_VPS4 MIT: domain c 70.2 16 0.00035 20.4 4.4 14 49-62 3-16 (75)
385 PF11817 Foie-gras_1: Foie gra 70.0 23 0.00049 24.6 6.0 52 49-100 154-207 (247)
386 cd02656 MIT MIT: domain contai 68.3 18 0.0004 20.1 4.5 14 49-62 3-16 (75)
387 PF13812 PPR_3: Pentatricopept 67.9 10 0.00022 16.9 4.3 26 74-99 4-29 (34)
388 cd08977 SusD starch binding ou 67.8 32 0.00069 25.0 6.6 33 69-101 174-211 (359)
389 COG0790 FOG: TPR repeat, SEL1 66.9 41 0.00088 23.5 10.4 93 14-114 130-232 (292)
390 COG5191 Uncharacterized conser 66.0 7 0.00015 28.9 2.8 43 67-109 103-145 (435)
391 PF02064 MAS20: MAS20 protein 65.0 19 0.0004 22.5 4.2 32 74-105 66-97 (121)
392 PF09986 DUF2225: Uncharacteri 64.8 24 0.00053 24.1 5.2 32 29-62 163-194 (214)
393 PF14858 DUF4486: Domain of un 64.8 59 0.0013 25.7 7.6 63 35-99 155-225 (542)
394 PF11846 DUF3366: Domain of un 64.6 23 0.00049 23.5 4.9 48 14-68 128-175 (193)
395 KOG0276 Vesicle coat complex C 64.4 57 0.0012 26.5 7.5 69 27-97 662-747 (794)
396 KOG4056 Translocase of outer m 63.6 21 0.00046 22.9 4.3 34 34-73 84-117 (143)
397 PF09797 NatB_MDM20: N-acetylt 62.7 30 0.00064 25.5 5.6 46 48-97 198-243 (365)
398 PF12583 TPPII_N: Tripeptidyl 62.6 38 0.00083 21.7 6.5 48 28-81 73-120 (139)
399 COG4649 Uncharacterized protei 61.0 50 0.0011 22.5 9.9 80 33-115 96-210 (221)
400 PF10255 Paf67: RNA polymerase 60.9 20 0.00043 27.2 4.5 34 27-62 160-193 (404)
401 PF02184 HAT: HAT (Half-A-TPR) 60.5 18 0.00038 17.1 3.1 23 87-110 3-25 (32)
402 KOG3617 WD40 and TPR repeat-co 60.3 40 0.00087 28.5 6.2 66 30-97 1079-1171(1416)
403 KOG2047 mRNA splicing factor [ 59.6 98 0.0021 25.4 9.2 80 30-112 424-518 (835)
404 KOG2709 Uncharacterized conser 59.5 81 0.0018 24.4 7.4 69 30-100 21-97 (560)
405 KOG0985 Vesicle coat protein c 59.3 67 0.0015 27.9 7.4 59 30-99 1103-1161(1666)
406 COG1747 Uncharacterized N-term 59.3 72 0.0016 25.5 7.2 64 28-99 96-159 (711)
407 PF08631 SPO22: Meiosis protei 58.9 61 0.0013 22.9 8.9 78 30-108 34-124 (278)
408 PF10579 Rapsyn_N: Rapsyn N-te 58.8 34 0.00073 19.8 4.6 42 73-114 8-49 (80)
409 PF04910 Tcf25: Transcriptiona 58.5 42 0.00091 24.9 5.8 33 67-99 36-68 (360)
410 PF08969 USP8_dimer: USP8 dime 58.3 36 0.00079 20.6 4.7 32 30-63 37-68 (115)
411 PF05053 Menin: Menin; InterP 58.3 47 0.001 26.5 6.1 50 50-99 296-346 (618)
412 PF14689 SPOB_a: Sensor_kinase 58.1 29 0.00062 18.8 5.7 32 68-99 20-51 (62)
413 cd00215 PTS_IIA_lac PTS_IIA, P 58.0 36 0.00077 20.4 4.5 34 27-62 11-44 (97)
414 TIGR00823 EIIA-LAC phosphotran 57.8 35 0.00076 20.5 4.4 34 27-62 13-46 (99)
415 KOG2709 Uncharacterized conser 57.6 15 0.00033 28.1 3.3 29 72-100 23-51 (560)
416 KOG2422 Uncharacterized conser 57.5 1E+02 0.0022 24.9 8.3 80 27-108 280-380 (665)
417 PF10345 Cohesin_load: Cohesin 56.3 1E+02 0.0022 24.5 8.8 70 30-103 58-131 (608)
418 PF02255 PTS_IIA: PTS system, 56.3 41 0.00089 20.0 4.7 34 27-62 10-43 (96)
419 COG4455 ImpE Protein of avirul 55.9 53 0.0011 23.2 5.5 83 15-103 19-118 (273)
420 PF07079 DUF1347: Protein of u 55.5 1E+02 0.0022 24.2 9.7 39 78-117 469-507 (549)
421 PF08626 TRAPPC9-Trs120: Trans 54.9 29 0.00063 30.0 4.9 57 27-85 238-296 (1185)
422 PF07980 SusD: SusD family; I 54.9 34 0.00073 23.3 4.6 30 70-99 132-161 (266)
423 COG5600 Transcription-associat 53.4 61 0.0013 24.6 5.8 66 36-103 182-252 (413)
424 PF10602 RPN7: 26S proteasome 53.1 64 0.0014 21.3 7.7 35 68-102 33-67 (177)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 51.7 56 0.0012 20.3 5.8 46 51-98 81-126 (126)
426 KOG3677 RNA polymerase I-assoc 51.2 26 0.00056 26.9 3.7 25 75-99 276-300 (525)
427 PRK09591 celC cellobiose phosp 50.6 55 0.0012 19.8 6.2 35 26-62 15-49 (104)
428 KOG2300 Uncharacterized conser 49.9 97 0.0021 24.6 6.5 69 31-101 445-515 (629)
429 smart00671 SEL1 Sel1-like repe 49.9 26 0.00056 15.8 3.9 26 74-99 4-33 (36)
430 PRK15180 Vi polysaccharide bio 49.8 19 0.00042 28.3 2.9 33 25-59 317-349 (831)
431 KOG2997 F-box protein FBX9 [Ge 49.7 61 0.0013 24.0 5.2 41 29-75 17-57 (366)
432 PRK10454 PTS system N,N'-diace 49.5 62 0.0013 20.1 5.6 35 26-62 26-60 (115)
433 PRK15490 Vi polysaccharide bio 49.3 1.4E+02 0.003 24.0 8.8 60 28-95 39-98 (578)
434 COG4649 Uncharacterized protei 48.7 85 0.0018 21.4 5.9 51 27-84 163-213 (221)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 48.6 54 0.0012 20.4 4.4 31 28-60 96-126 (126)
436 KOG0985 Vesicle coat protein c 47.7 60 0.0013 28.2 5.4 53 33-99 1196-1248(1666)
437 PF07219 HemY_N: HemY protein 47.5 61 0.0013 19.4 4.7 42 72-113 60-101 (108)
438 KOG2114 Vacuolar assembly/sort 47.1 81 0.0017 26.5 6.0 31 30-62 367-397 (933)
439 PF13838 Clathrin_H_link: Clat 47.1 44 0.00096 18.6 3.4 25 32-58 7-31 (66)
440 KOG3617 WD40 and TPR repeat-co 47.0 1.9E+02 0.0041 24.9 8.3 58 38-97 919-993 (1416)
441 KOG2581 26S proteasome regulat 45.9 74 0.0016 24.5 5.3 39 27-71 243-281 (493)
442 PF01239 PPTA: Protein prenylt 45.8 31 0.00066 15.5 4.4 18 92-109 4-21 (31)
443 KOG2997 F-box protein FBX9 [Ge 45.4 55 0.0012 24.3 4.5 38 72-109 20-57 (366)
444 TIGR02710 CRISPR-associated pr 45.0 1.3E+02 0.0029 22.7 8.6 68 27-96 124-196 (380)
445 PF04053 Coatomer_WDAD: Coatom 44.5 1.4E+02 0.0031 22.9 7.7 30 30-61 346-375 (443)
446 PF08238 Sel1: Sel1 repeat; I 44.4 34 0.00075 15.7 4.2 13 87-99 24-36 (39)
447 KOG1258 mRNA processing protei 44.3 1.3E+02 0.0029 24.0 6.7 56 49-108 61-116 (577)
448 KOG4014 Uncharacterized conser 44.1 75 0.0016 21.9 4.7 77 30-115 67-154 (248)
449 KOG2114 Vacuolar assembly/sort 44.0 84 0.0018 26.4 5.6 63 36-105 339-403 (933)
450 PF11207 DUF2989: Protein of u 43.9 1E+02 0.0023 21.1 6.7 64 50-117 123-190 (203)
451 KOG1811 Predicted Zn2+-binding 43.8 65 0.0014 26.3 4.9 49 54-102 570-618 (1141)
452 COG4259 Uncharacterized protei 43.5 77 0.0017 19.4 6.3 39 67-105 68-106 (121)
453 COG5107 RNA14 Pre-mRNA 3'-end 42.2 1.7E+02 0.0037 23.1 8.6 42 19-62 30-71 (660)
454 PF14852 Fis1_TPR_N: Fis1 N-te 41.9 40 0.00087 16.1 2.4 29 73-101 3-34 (35)
455 cd00280 TRFH Telomeric Repeat 41.3 1.1E+02 0.0025 20.8 7.4 30 78-108 118-147 (200)
456 PF10938 YfdX: YfdX protein; 41.3 98 0.0021 20.1 7.6 68 30-99 74-145 (155)
457 PF10345 Cohesin_load: Cohesin 41.1 1.8E+02 0.004 23.1 11.1 63 31-95 361-428 (608)
458 TIGR00985 3a0801s04tom mitocho 40.6 69 0.0015 20.8 4.0 31 75-105 94-125 (148)
459 COG5159 RPN6 26S proteasome re 40.1 70 0.0015 23.6 4.3 53 35-89 7-63 (421)
460 COG1447 CelC Phosphotransferas 39.3 90 0.002 19.1 5.0 35 25-61 13-47 (105)
461 KOG0890 Protein kinase of the 39.1 2.6E+02 0.0056 26.6 8.1 67 27-101 1666-1732(2382)
462 TIGR03362 VI_chp_7 type VI sec 39.0 1.5E+02 0.0033 21.5 7.8 67 31-100 213-279 (301)
463 PHA02537 M terminase endonucle 38.9 75 0.0016 22.2 4.2 33 28-62 166-207 (230)
464 TIGR03362 VI_chp_7 type VI sec 38.8 1.5E+02 0.0033 21.5 7.0 47 43-96 111-157 (301)
465 PF10366 Vps39_1: Vacuolar sor 38.6 54 0.0012 19.9 3.2 29 31-61 39-67 (108)
466 KOG3616 Selective LIM binding 38.5 1.9E+02 0.004 24.6 6.8 63 33-97 663-732 (1636)
467 KOG3677 RNA polymerase I-assoc 38.2 84 0.0018 24.3 4.6 63 35-103 276-339 (525)
468 PF12753 Nro1: Nuclear pore co 38.2 39 0.00085 25.6 2.9 33 49-87 334-366 (404)
469 cd00280 TRFH Telomeric Repeat 38.0 1.3E+02 0.0028 20.5 7.7 76 10-92 82-165 (200)
470 KOG2561 Adaptor protein NUB1, 37.6 55 0.0012 25.5 3.6 55 31-87 163-224 (568)
471 COG5091 SGT1 Suppressor of G2 37.5 79 0.0017 23.0 4.2 53 48-100 54-108 (368)
472 PF04190 DUF410: Protein of un 37.3 1.4E+02 0.003 21.1 5.5 27 68-94 87-113 (260)
473 KOG2041 WD40 repeat protein [G 37.0 1.7E+02 0.0036 24.6 6.3 28 30-59 795-822 (1189)
474 PF00244 14-3-3: 14-3-3 protei 36.8 64 0.0014 22.4 3.7 29 75-103 5-33 (236)
475 PF05131 Pep3_Vps18: Pep3/Vps1 36.1 29 0.00063 22.3 1.8 18 79-96 111-128 (147)
476 PF04053 Coatomer_WDAD: Coatom 35.8 1.7E+02 0.0037 22.5 6.1 31 68-98 344-374 (443)
477 KOG0739 AAA+-type ATPase [Post 34.6 2E+02 0.0043 21.6 7.3 15 48-62 25-39 (439)
478 PF04010 DUF357: Protein of un 34.6 90 0.002 17.7 4.6 30 28-59 32-61 (75)
479 KOG4056 Translocase of outer m 34.5 1.3E+02 0.0028 19.5 4.4 34 75-108 85-118 (143)
480 KOG1914 mRNA cleavage and poly 34.1 2.5E+02 0.0055 22.7 8.9 55 40-100 410-464 (656)
481 PF15469 Sec5: Exocyst complex 34.0 1.4E+02 0.003 19.6 7.8 65 40-110 95-178 (182)
482 PRK13184 pknD serine/threonine 33.5 79 0.0017 26.8 4.2 71 28-104 549-624 (932)
483 KOG0687 26S proteasome regulat 33.5 2.1E+02 0.0045 21.5 7.5 72 28-101 101-174 (393)
484 PF13226 DUF4034: Domain of un 33.0 1.9E+02 0.0041 20.9 7.0 45 67-111 73-139 (277)
485 PF12583 TPPII_N: Tripeptidyl 33.0 1.4E+02 0.0029 19.2 4.9 28 86-113 91-118 (139)
486 TIGR02996 rpt_mate_G_obs repea 31.4 78 0.0017 16.0 3.4 31 56-90 5-35 (42)
487 TIGR02863 spore_sspJ small, ac 31.2 65 0.0014 16.2 2.2 23 1-23 1-23 (47)
488 KOG0292 Vesicle coat complex C 30.9 1.8E+02 0.004 24.9 5.7 59 28-92 1081-1139(1202)
489 PF09477 Type_III_YscG: Bacter 30.2 1.4E+02 0.003 18.5 8.8 19 77-95 75-93 (116)
490 PF14346 DUF4398: Domain of un 30.1 1.2E+02 0.0027 17.8 6.7 31 30-62 44-74 (103)
491 PF04190 DUF410: Protein of un 29.8 2E+02 0.0044 20.2 9.3 70 29-100 88-170 (260)
492 COG5107 RNA14 Pre-mRNA 3'-end 29.6 2.7E+02 0.0058 22.1 6.1 52 41-98 442-493 (660)
493 KOG2063 Vacuolar assembly/sort 29.5 3.2E+02 0.0069 23.3 6.9 72 31-104 504-577 (877)
494 KOG2034 Vacuolar sorting prote 27.0 1.4E+02 0.0031 25.2 4.5 25 73-97 391-415 (911)
495 KOG0889 Histone acetyltransfer 27.0 50 0.0011 32.0 2.2 51 68-118 2809-2859(3550)
496 KOG1464 COP9 signalosome, subu 26.9 1.9E+02 0.0042 21.3 4.8 49 12-62 42-94 (440)
497 KOG3616 Selective LIM binding 26.7 2E+02 0.0044 24.4 5.3 37 68-104 992-1028(1636)
498 KOG2062 26S proteasome regulat 26.5 91 0.002 26.0 3.3 37 68-104 56-95 (929)
499 PF04505 Dispanin: Interferon- 25.9 1E+02 0.0022 17.7 2.7 21 80-100 46-66 (82)
500 PRK12791 flbT flagellar biosyn 25.8 1.8E+02 0.004 18.4 4.8 34 67-101 87-120 (131)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=116.65 Aligned_cols=86 Identities=35% Similarity=0.446 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+...++.++..||.+++.+ +|++|+..|++||++ +|.++.+|.|||.+|.++|.|+.|+++|+.+|.+||.+.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~--~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNK--DYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 4457889999999999998 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcCC
Q 033440 107 VVILCSGSHPNQ 118 (119)
Q Consensus 107 a~~~~a~~~~~~ 118 (119)
+|-++|.+|+.+
T Consensus 151 ay~RLG~A~~~~ 162 (304)
T KOG0553|consen 151 AYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHcc
Confidence 999999998654
No 2
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=1e-15 Score=98.43 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=75.0
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++.+..++|.+...+..+|.++...| ++++|+..|.+++.+ +|.++.+++++|.|+..+|++++|+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~y~~Al~l----~p~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--EYTTAINFYGHALML----DASHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566677777778888888888888888877 888888888888888 788888888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|+++++++|+++..+..+|.+.
T Consensus 115 ~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 115 FQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHhCCCChHHHHHHHHHH
Confidence 8888888888877777776543
No 3
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.7e-16 Score=114.73 Aligned_cols=96 Identities=35% Similarity=0.526 Sum_probs=88.2
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+..+..+....++|..+...+..|+.+|+.| ||..|+..|+++|.. +|+++.+|.|||.||.++|++..|+.||
T Consensus 342 k~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g--dy~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 342 KALKEAERKAYINPEKAEEEREKGNEAFKKG--DYPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444555556678999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++|++.++|++.|.++.
T Consensus 416 ~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 416 KKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHhcCchHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 4
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.65 E-value=2.6e-15 Score=84.76 Aligned_cols=67 Identities=36% Similarity=0.565 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAFTDAEEALKLCP 102 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p 102 (119)
++..|..+|..++..| +|++|+..|+++|++ +|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG--DYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4678999999999999 999999999999999 9999999999999999999 79999999999999998
No 5
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.5e-16 Score=114.24 Aligned_cols=83 Identities=33% Similarity=0.559 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
-+.+..+..+||.+|+.| .|++||.+|++||++ +|+.+..|.||+.||..+|+|++.+++|.++|+++|+++++
T Consensus 112 ~k~A~~lK~~GN~~f~~k--kY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA 185 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNK--KYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA 185 (606)
T ss_pred HHHHHHHHhhhhhhhhcc--cHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence 457888999999999998 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhccCc
Q 033440 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
+++|+.++-
T Consensus 186 l~RRA~A~E 194 (606)
T KOG0547|consen 186 LLRRASAHE 194 (606)
T ss_pred HHHHHHHHH
Confidence 999999874
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.2e-14 Score=93.48 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=85.2
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+++++.++|+. +..+|..+++.| ++++|+..|.+++.. +|.++.++.++|.++..+|++++|+..|+++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEG--DYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4688888999986 667899999999 999999999999999 9999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHhhccCcC
Q 033440 98 LKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 98 l~l~p~~~~a~~~~a~~~~~ 117 (119)
+.++|+++.+++++|.++..
T Consensus 85 l~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHH
Confidence 99999999999999998753
No 7
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.54 E-value=1.1e-13 Score=89.54 Aligned_cols=92 Identities=7% Similarity=-0.052 Sum_probs=77.9
Q ss_pred HHHHHHhc-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 20 LDAIAALK-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 20 ~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+..+..+. ++..+.++..|..+++.| ++++|...|+-...+ +|.++..++++|.|+..+|+|++||..|.+++
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455667 778888888888888888 888998888888888 88888888899999888899999999999988
Q ss_pred hhCCCCHHHHHHhhccCcC
Q 033440 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+++.+++..|.|++.
T Consensus 97 ~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred hcCCCCchHHHHHHHHHHH
Confidence 8888888888888888753
No 8
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=2e-13 Score=85.99 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=55.1
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.++.+...+|++......+|..++..| ++++|+..+++++.. +|.++.++.++|.++..+|++.+|+..+++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQG--RYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666655 666666666666665 56666666666666666666666666666666
Q ss_pred hhCCCCHHHHHHhhccC
Q 033440 99 KLCPTNVKVVILCSGSH 115 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~ 115 (119)
+++|+++..++.+|.++
T Consensus 79 ~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECL 95 (135)
T ss_pred hcCCCChHHHHHHHHHH
Confidence 66666666666665554
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=2e-13 Score=92.02 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=91.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH-HHhcC--HHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN-LLLGN--YRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~-~~l~~--~~~ 89 (119)
.++.+..+......+|++++.|..+|..+...| ++++|+..|++++.+ .|+++.++.++|.++ ...|+ +++
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--DYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 356677888889999999999999999999999 999999999999999 999999999999985 67787 599
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+..++++++++|+++.+++.+|.++++
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999987754
No 10
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.7e-13 Score=91.85 Aligned_cols=87 Identities=31% Similarity=0.420 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
...+..+...||.+|.+| +|++|...|..||++||.. ......+|.|+|.|+++++.++.||.+|.++++++|.+.+
T Consensus 92 ~~kad~lK~EGN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 345778899999999999 9999999999999996542 2245679999999999999999999999999999999999
Q ss_pred HHHHhhccCc
Q 033440 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++.++|.+|-
T Consensus 170 Al~RRAeaye 179 (271)
T KOG4234|consen 170 ALERRAEAYE 179 (271)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=3.6e-13 Score=98.00 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=90.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.++..+++++.++|+++..+..+|.+++..| ++++|+..+++++.+ +|.++.+++++|.+++.+|+|++|+.
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG--NFTEAVADANKAIEL----DPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 346788899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhcc
Q 033440 93 DAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.++++++++|++..++..++.|
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998887766
No 12
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.49 E-value=4.1e-13 Score=74.87 Aligned_cols=65 Identities=26% Similarity=0.405 Sum_probs=60.4
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+.+|..+++.| +|++|+..|++++.. .|+++.+++.+|.|+..+|++++|+..++++++++|+++
T Consensus 1 ~~~a~~~~~~g--~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQG--DYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCT--HHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999 999999999999999 999999999999999999999999999999999999875
No 13
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-13 Score=96.08 Aligned_cols=113 Identities=35% Similarity=0.536 Sum_probs=90.7
Q ss_pred cccCCCCCCCChh-hHHhHHHHHHh----c-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440 3 LWMDAESEPKTES-EKADLDAIAAL----K-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~~----~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
+||...+++-.+. .+..++.+... . ...+.-+.+.||.||+.. +|..|+.+|+++|...+....-++.+|.|
T Consensus 47 fFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~K--ryk~A~~~Yt~Glk~kc~D~dlnavLY~N 124 (390)
T KOG0551|consen 47 FFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEK--RYKDAVESYTEGLKKKCADPDLNAVLYTN 124 (390)
T ss_pred HHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhh--hHHHHHHHHHHHHhhcCCCccHHHHHHhh
Confidence 5676666554432 22333333222 1 347888999999999987 99999999999999855545568899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 77 RAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
||.|.+.+|+|..|+.+|.+++.++|.+.+++++-|.|+++
T Consensus 125 RAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 125 RAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998753
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=1e-12 Score=93.37 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=72.9
Q ss_pred hhhHHhHHHHHH---hcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 14 ESEKADLDAIAA---LKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
+..+..+.+++. ++| ..+..+..+|..+...| ++++|+..|++++++ +|+++.+++++|.++..+|++++
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHH
Confidence 344555555553 333 34677888888888877 888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+..++++++++|++..+++++|.+++
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888888877654
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=6e-13 Score=93.26 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=86.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..+.+++.++|+++.-|.+++.+|.+.| .|+.|+.....+|.+ +|..+.+|..+|.+|+-+|+|++|+..|
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--~~~~AVkDce~Al~i----Dp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--EYEDAVKDCESALSI----DPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--chHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 4667788899999999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhc
Q 033440 95 EEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~ 113 (119)
+++|+++|+|...+-.+..
T Consensus 173 kKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 173 KKALELDPDNESYKSNLKI 191 (304)
T ss_pred HhhhccCCCcHHHHHHHHH
Confidence 9999999999876655543
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.7e-13 Score=96.95 Aligned_cols=86 Identities=29% Similarity=0.293 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc-----------chHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS-----------ENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+....+.||.+|+.| +|..|...|.+++..+....+ ....++.|++.|++++++|.+|+..|+++|
T Consensus 207 ~A~~~ke~Gn~~fK~g--k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEG--KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHhhhHHHhhc--hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4777889999999999 999999999999987543211 123589999999999999999999999999
Q ss_pred hhCCCCHHHHHHhhccCcC
Q 033440 99 KLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+|++|+|++|+++..
T Consensus 285 e~~~~N~KALyRrG~A~l~ 303 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLA 303 (397)
T ss_pred hcCCCchhHHHHHHHHHHh
Confidence 9999999999999999854
No 17
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.8e-13 Score=98.37 Aligned_cols=88 Identities=36% Similarity=0.562 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.|+..+.+.+.||..|++| +|..|.++|+.+|.+.|.+...++.+|.|||.+..++|+..+|+.+|+.++.+||...+
T Consensus 245 ~~k~le~~k~~gN~~fk~G--~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNG--NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hHHHHHHHHhhhhhHhhcc--chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 3555667899999999999 99999999999999955555567789999999999999999999999999999999999
Q ss_pred HHHHhhccCc
Q 033440 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++.++|.||+
T Consensus 323 all~ra~c~l 332 (486)
T KOG0550|consen 323 ALLRRANCHL 332 (486)
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.43 E-value=9.2e-13 Score=95.87 Aligned_cols=79 Identities=34% Similarity=0.536 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
.+...|+.++..| +|++|+..|+++|++ +|+++.+++++|.++..+|++++|+.++++++.++|+++.+|+++|
T Consensus 4 ~l~~~a~~a~~~~--~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 4 DLEDKAKEAFVDD--DFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4678899999999 999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCcC
Q 033440 113 GSHPN 117 (119)
Q Consensus 113 ~~~~~ 117 (119)
.+++.
T Consensus 78 ~~~~~ 82 (356)
T PLN03088 78 TACMK 82 (356)
T ss_pred HHHHH
Confidence 88754
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=1.8e-12 Score=99.89 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=55.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++..++|.....+..+|.++...| ++++|+..|+++++. +|+++.+++++|.+++.+|++++|+.++
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555555555555555 555555555555555 5555666666666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|++..+++.+|.++
T Consensus 423 ~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHH
Confidence 666666666655555555544
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=4.2e-12 Score=90.24 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=82.6
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.++..++++.+++|+++.++..+|..+...| ++++|+..|++++++ +|++..++.++|.++...|++++|+.+
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888999999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHH
Q 033440 94 AEEALKLCPTNVK 106 (119)
Q Consensus 94 ~~~al~l~p~~~~ 106 (119)
++++++++|+++.
T Consensus 155 ~~~al~~~P~~~~ 167 (296)
T PRK11189 155 LLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHhCCCCHH
Confidence 9999999999873
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=5.9e-12 Score=79.25 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=82.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++.+...+|.+...+..+|..++..| ++++|+..+++++.. +|.++..++++|.|+..+|++++|+..
T Consensus 34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~ 107 (135)
T TIGR02552 34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--EYEEAIDAYALAAAL----DPDDPRPYFHAAECLLALGEPESALKA 107 (135)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667788888899999999999999999998 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHH
Q 033440 94 AEEALKLCPTNVKVV 108 (119)
Q Consensus 94 ~~~al~l~p~~~~a~ 108 (119)
++++++++|++....
T Consensus 108 ~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 108 LDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHhccccchHH
Confidence 999999999887643
No 22
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=8.7e-12 Score=80.73 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=79.0
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+...+..+..++|.++.-|+.+|.++-..| +|++|+..|.+++.+ +|++|..+++.|.|++.+|+.+.|...
T Consensus 52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L----~~ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--HWGEAIYAYGRAAQI----KIDAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 45677888889999999999999999999988 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 033440 94 AEEALKLCPT 103 (119)
Q Consensus 94 ~~~al~l~p~ 103 (119)
++.++...-.
T Consensus 126 F~~Ai~~~~~ 135 (157)
T PRK15363 126 LKAVVRICGE 135 (157)
T ss_pred HHHHHHHhcc
Confidence 9999998743
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=3.5e-12 Score=97.42 Aligned_cols=95 Identities=16% Similarity=0.036 Sum_probs=87.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|+++.++..+|..+...| ++++|+..|++++++ +|+++.+++++|.++..+|++++|+.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS--EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 457778889999999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhc
Q 033440 93 DAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~ 113 (119)
.++++++++|.++.+++.++.
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHH
Confidence 999999999998876655443
No 24
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.38 E-value=6.1e-12 Score=71.49 Aligned_cols=70 Identities=29% Similarity=0.507 Sum_probs=65.4
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
...+++.+ +|++|+..+++++.+ +|+++..+..+|.|+..+|++.+|+.+++++++.+|+++.+...+++
T Consensus 2 ~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQE--DYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCC--CHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46788888 999999999999999 99999999999999999999999999999999999999988877664
No 25
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.37 E-value=7.7e-13 Score=94.87 Aligned_cols=80 Identities=38% Similarity=0.492 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
....+.++||.||++| .|++||.+|.++|.. +|-++.++.||+.+|+++++|..|..+|..++.+|..+.++|.
T Consensus 96 ~~SEiKE~GN~yFKQg--Ky~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQG--KYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhHHHHHhhhhhhhcc--chhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 3445789999999999 999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 033440 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
+++.+.
T Consensus 170 RR~~AR 175 (536)
T KOG4648|consen 170 RRMQAR 175 (536)
T ss_pred HHHHHH
Confidence 998764
No 26
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=2.9e-12 Score=97.41 Aligned_cols=94 Identities=28% Similarity=0.254 Sum_probs=58.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..+..++.++|..++++.++|+.+-..| +.+.|+.+|++||.+ .|..++++.|+|.+|...|+..+||..|
T Consensus 406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g--~v~~A~q~y~rAI~~----nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPTFADALSNMGNTYKEMG--DVSAAIQCYTRAIQI----NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHhcCchHHHHHHhcchHHHHhh--hHHHHHHHHHHHHhc----CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 4455555556666666666666666666655 666666666666666 6666666666666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHhhcc
Q 033440 95 EEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~ 114 (119)
+.+|+++|+++.++-+++.+
T Consensus 480 ~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHccCCCCchhhhHHHHH
Confidence 66666666666666665544
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=4.8e-12 Score=97.58 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=91.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++...+|+++..+..+|..++..| ++++|+..|++++.+ +|++..++.++|.++.++|++++|+.
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG--EFAQAGKDYQKSIDL----DPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356778888888999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++..|+++.+++.+|.++..
T Consensus 455 ~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 455 TFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999887743
No 28
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-12 Score=95.97 Aligned_cols=79 Identities=35% Similarity=0.475 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+.+.||..|..| ||+.|+..|+.+|.+ +|.+..+|.||+.||..+|+|.+|+++..+.++++|+++++|.++
T Consensus 3 ~e~k~kgnaa~s~~--d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~ 76 (539)
T KOG0548|consen 3 VELKEKGNAAFSSG--DFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRK 76 (539)
T ss_pred hHHHHHHHhhcccc--cHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 45677899999988 999999999999999 888889999999999999999999999999999999999999998
Q ss_pred hccCc
Q 033440 112 SGSHP 116 (119)
Q Consensus 112 a~~~~ 116 (119)
|-++.
T Consensus 77 Gaa~~ 81 (539)
T KOG0548|consen 77 GAALF 81 (539)
T ss_pred HHHHH
Confidence 87663
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.32 E-value=1.2e-11 Score=94.12 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=56.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+...+..+....|..+.++.++|.++-++| ++++|+.+|.++|.+ +|.-+.++.|+|..|-.+|+...|+++|
T Consensus 372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg--nl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEFAAAHNNLASIYKQQG--NLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--cHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 3444555555555666666666666666655 566666666666666 6666666666666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+++.++|...++|.++|.+|
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHh
Confidence 666666666666666665554
No 30
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.32 E-value=8.8e-12 Score=69.87 Aligned_cols=66 Identities=27% Similarity=0.331 Sum_probs=60.6
Q ss_pred HHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 42 VKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+..| +|++|+..|++++.. +|++..+.+.+|.|+++.|++++|...+.+++..+|+++..+..++.
T Consensus 2 l~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQG--DYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTT--HHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhcc--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 5667 999999999999999 99999999999999999999999999999999999999888777664
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.7e-11 Score=93.64 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=90.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG-------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.++++..++++..++|+.+.++..+|.++...+ .+++++|+..+++++++ +|+++.++..+|.++...|
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcc
Confidence 356778899999999999999999998876432 01589999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..++++++++|+++.+|+.+|.++..
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987743
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=2.9e-11 Score=97.34 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=75.8
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++..++|+ +..+..+|.++.+.| ++++|+..|++++.+ +|+++.++.++|.++..+|++++|+..
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG--~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRH--NVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4556667777777775 777888888888877 888888888888888 888888888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.+++.+|.++.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888888888877664
No 33
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.1e-12 Score=86.87 Aligned_cols=82 Identities=35% Similarity=0.475 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+.+.|+.+|... .|..|+..|.++|.+ +|..+.++.|++.||+++++|+.+..+|+++++++|+.++++|
T Consensus 9 ~a~qlkE~gnk~f~~k--~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPK--RYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred HHHHHHhccccccchh--hhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 4677889999999976 999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhhccCcC
Q 033440 110 LCSGSHPN 117 (119)
Q Consensus 110 ~~a~~~~~ 117 (119)
.+|.++++
T Consensus 83 flg~~~l~ 90 (284)
T KOG4642|consen 83 FLGQWLLQ 90 (284)
T ss_pred HHHHHHHh
Confidence 99987653
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.5e-12 Score=92.20 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=89.7
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.++++.++.++|.....+..+|..|.+.. +.++-...|++|..+ +|+++.+|+.||+.++.+++|++|+.+|
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4667899999999998888999999999988 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCcC
Q 033440 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++.++|++.-+|..++.+.+.
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHH
Confidence 99999999999999988877654
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=5.9e-11 Score=92.63 Aligned_cols=98 Identities=9% Similarity=-0.118 Sum_probs=92.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++.+.++.|++..+....+.++.+.+ .+++|+..+++++.. +|+++..++.+|.++..+|++++|+.
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--GIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 456778899999999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.|++++..+|++..++..+|.++.
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999998875
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3e-11 Score=82.21 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.+.++++.+++|++.+.+.+-|..++.+| .|++|...|++|+.. |. .+..+..+-|.|.|-++.|+++.|..++
T Consensus 87 ~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg--~~~eA~q~F~~Al~~-P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 87 LADESYRKALSLAPNNGDVLNNYGAFLCAQG--RPEEAMQQFERALAD-PA-YGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred hHHHHHHHHHhcCCCccchhhhhhHHHHhCC--ChHHHHHHHHHHHhC-CC-CCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 4455666777777777777777777777776 777777777777763 33 4567778889999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++|+++|+++.+...++..++
T Consensus 163 ~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 163 KRALELDPQFPPALLELARLHY 184 (250)
T ss_pred HHHHHhCcCCChHHHHHHHHHH
Confidence 9999999998888877776654
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-10 Score=86.23 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=61.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---------------------------- 65 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------- 65 (119)
++++..+.+++++||+...+|.-.|..++... +...|+..|++||+++|.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 45555566666666666666666666666665 566666666666666221
Q ss_pred --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
-.|+++.++..+|.||.++++.++|+..|.+++.....+..+++++|.+|
T Consensus 425 ~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 425 LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 05666666666666666666666666666666666666666666666554
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=3.3e-11 Score=97.08 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++..++|+++..+..+|..+...| ++++|+..|++++++ .|+++.+++++|.++..+|++++|+.
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G--~~eeAi~~l~~AL~l----~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG--DIAQSREMLERAHKG----LPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++++++++|++....+..|.+.
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHH
Confidence 99999999999988887777654
No 39
>PLN02789 farnesyltranstransferase
Probab=99.24 E-value=1.2e-10 Score=83.71 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=70.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcH--HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY--SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++++..++++...+|++..+|..+|.++.+.| +. ++++..++++|+. +|.+..++.+|+.++..+|+|++++
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~--~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG--PDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC--chhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHH
Confidence 35566666666667777777777776666665 42 5666777777777 7777788888888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
..|.++|+.+|.|..+|+.++.++
T Consensus 163 ~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 163 EYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHCCCchhHHHHHHHHH
Confidence 888888888888888888877654
No 40
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.9e-11 Score=82.17 Aligned_cols=85 Identities=27% Similarity=0.300 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc--------cCCCcc-------hHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN--------VLSDSE-------NSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------~~~~~~-------~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
....+.+.||.+|+.| +|.+|...|..||... |+ +|. ...++.|.++|++..|+|-+++++|
T Consensus 177 av~~l~q~GN~lfk~~--~ykEA~~~YreAi~~l~~L~lkEkP~-e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLG--RYKEASSKYREAIICLRNLQLKEKPG-EPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhHHHHHhhhhhhhhc--cHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 4667889999999999 9999999999999541 22 222 3368899999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCcC
Q 033440 95 EEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+.+|..+|+|++|||++|.++..
T Consensus 254 seiL~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 41
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.22 E-value=1.6e-10 Score=76.02 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++..+..+..+|..+...| ++++|+.+|.+++...+. .++.+.++.++|.++..+|++++|+..+.+++.++|++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADG--EYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4567778999999999999 999999999999987222 2234678999999999999999999999999999999999
Q ss_pred HHHHhhccCc
Q 033440 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++..+|.++.
T Consensus 108 ~~~~lg~~~~ 117 (172)
T PRK02603 108 ALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.21 E-value=1.4e-10 Score=67.78 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=66.0
Q ss_pred hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+.++..++++....|+ +...+..+|.++++.| +|++|+..+++ +.. ++.++..++..|.|++++|+|++|+
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--KYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677788888887773 6777888999999999 99999999999 878 8888888888999999999999999
Q ss_pred HHHHHH
Q 033440 92 TDAEEA 97 (119)
Q Consensus 92 ~~~~~a 97 (119)
..+.++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998875
No 43
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.21 E-value=1.6e-10 Score=66.50 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
|+.+..+..+|.+++..| +|++|+..|++++.+.... .|..+.++.++|.|+..+|++++|+..+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 678899999999999999 9999999999999873221 34457899999999999999999999999999863
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=85.89 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+..++.=.++..--.||-|.-++ ++++|+.+|++|+.+ +|....++.-.|+=|+.+++-..|++.|++|++++|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~--eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRS--EHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHhccCCccceeeehhHHHHHH--hHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 44455555666677899998877 999999999999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHhhccC
Q 033440 103 TNVKVVILCSGSH 115 (119)
Q Consensus 103 ~~~~a~~~~a~~~ 115 (119)
.+..|||.+|++|
T Consensus 396 ~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 396 RDYRAWYGLGQAY 408 (559)
T ss_pred hhHHHHhhhhHHH
Confidence 9999999999987
No 45
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.20 E-value=7.4e-11 Score=87.18 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=66.5
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL---YANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+|+++..+.++|..++..| +|++|+..|+++|++ +|+++.+ |+|+|.||..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG--RVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999 999999999999999 9998854 9999999999999999999999999983
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2e-11 Score=92.60 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 22 AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+..-+|..+++|...||++..++ +++.|+++|.+||.+ +|...-+|--+|+=+.....|+.|...|++||..+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 345668889999999999999987 999999999999999 89888888888888888999999999999999999
Q ss_pred CCCHHHHHHhhccCcCC
Q 033440 102 PTNVKVVILCSGSHPNQ 118 (119)
Q Consensus 102 p~~~~a~~~~a~~~~~~ 118 (119)
|++..|||.+|.+|++|
T Consensus 486 ~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred chhhHHHHhhhhheecc
Confidence 99999999999988764
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.18 E-value=2.8e-10 Score=76.77 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=79.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHH-HHhChhc--HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEY-VKKGKKH--YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+.+...++++..++|+++..+..+|.++ +..| + +++|...+++++.. +|+++.+++++|.+++.+|+|++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g--~~~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~~~~ 162 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAG--QHMTPQTREMIDKALAL----DANEVTALMLLASDAFMQADYAQ 162 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCCHHH
Confidence 35677889999999999999999999985 6766 6 69999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH
Q 033440 90 AFTDAEEALKLCPTNV 105 (119)
Q Consensus 90 A~~~~~~al~l~p~~~ 105 (119)
|+..++++++++|.+.
T Consensus 163 Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 163 AIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhhCCCCc
Confidence 9999999999998653
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=2.6e-10 Score=65.35 Aligned_cols=75 Identities=36% Similarity=0.516 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+..+|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+..+.+++...|.+..+++.+|.
T Consensus 3 ~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLG--DYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHh--cHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 334444444444 455555555555544 44444444455555555555555555555555555444444444443
Q ss_pred c
Q 033440 114 S 114 (119)
Q Consensus 114 ~ 114 (119)
+
T Consensus 77 ~ 77 (100)
T cd00189 77 A 77 (100)
T ss_pred H
Confidence 3
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.16 E-value=3.2e-10 Score=88.34 Aligned_cols=94 Identities=10% Similarity=0.061 Sum_probs=64.9
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++..++|+++..+..+|..+...| ++++|+..+++++.+ +|+++.++.++|.++..+|++++|+..++
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTG--QNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456666666677777777777777777766 777777777777777 77777777777777777777777777777
Q ss_pred HHHhhCCCCHHHHHHhhccC
Q 033440 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
+++..+|++...+..+|.++
T Consensus 343 ~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 343 QLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHhCccchHHHHHHHHHH
Confidence 77777776665555544443
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=5.2e-10 Score=74.62 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=37.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...++++...+|.....+..+|..++..| ++++|+..|.+++.. .|.+..++.++|.++...|++++|+..+
T Consensus 49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 49 VAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444455555555555555555555555555 555555555555555 4444444444444444444444444444
Q ss_pred HHHH
Q 033440 95 EEAL 98 (119)
Q Consensus 95 ~~al 98 (119)
.+++
T Consensus 123 ~~~~ 126 (234)
T TIGR02521 123 EQAI 126 (234)
T ss_pred HHHH
Confidence 4433
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=6.6e-10 Score=74.12 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=62.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++.+.++++....|.....+..+|..++..| ++++|+..+.+++... . .+.....+.++|.++...|++++|+..+
T Consensus 83 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQG--KYEQAMQQFEQAIEDP-L-YPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcc-c-cccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455566666666666666667777777766 6777777777766540 0 2344556666677777777777777777
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+++..+|++..+++.+|.++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 159 TRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHhCcCChHHHHHHHHHHH
Confidence 7777777766666666666543
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.8e-11 Score=88.77 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=81.8
Q ss_pred HhcH--HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 25 ALKE--SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 25 ~~~~--~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
..+| .+++....+|..|...| +|+.|+.+|+.||.. .|++..++..+|..+..-.+.++||+.|++|++|.|
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~--efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSG--EFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcch--HHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 3455 57888999999999988 999999999999999 999999999999999999999999999999999999
Q ss_pred CCHHHHHHhhccCcCC
Q 033440 103 TNVKVVILCSGSHPNQ 118 (119)
Q Consensus 103 ~~~~a~~~~a~~~~~~ 118 (119)
.++.++|++|.+++++
T Consensus 496 ~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNL 511 (579)
T ss_pred Ceeeeehhhhhhhhhh
Confidence 9999999999988753
No 53
>PLN02789 farnesyltranstransferase
Probab=99.15 E-value=1.1e-09 Score=78.77 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=91.7
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH--HH
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY--RR 89 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~ 89 (119)
.++.++..++.++.++|++..+|..+|.++...|+ ++++++..+++++.. +|.+..++++|+.++.++|+. ++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-DLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCchhhHH
Confidence 46789999999999999999999999999999873 589999999999999 999999999999999999974 78
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++..+.++++++|.|..+|..++.++.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 899999999999999999999987653
No 54
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1.6e-09 Score=66.18 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=76.1
Q ss_pred hhhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCH
Q 033440 14 ESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNY 87 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~ 87 (119)
+++.+.+..+...+|+. ..++..+|.+++..| +++.|+..|.+++.. .|++ +.++.++|.++..+|++
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~ 92 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--KYADAAKAFLAVVKK----YPKSPKAPDALLKLGMSLQELGDK 92 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHH----CCCCCcccHHHHHHHHHHHHhCCh
Confidence 45677778877777654 568888999999988 999999999999998 5553 67889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q 033440 88 RRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~ 109 (119)
++|+..++++++..|++..+.-
T Consensus 93 ~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 93 EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHHHHCcCChhHHH
Confidence 9999999999999998876554
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.4e-10 Score=88.22 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=87.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.|+++..+..++..+|.+-.+|+.+|.+|.+++ +++.|.-.|.+|+++ +|.+..+....|..+.++|+.++|+.
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe--k~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE--KLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccc--hhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHH
Confidence 456777788888889999999999999999988 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.+++|+.+||.++-..|.+|.+++.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHh
Confidence 9999999999999888888887754
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.15 E-value=3.4e-10 Score=88.17 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=88.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHH----HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSD----AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
+++...++++...+|+++..+..+|..+...| ++++ |+..|++++.+ +|+++.++.++|.++...|++++
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G--~~~eA~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSG--RSREAKLQAAEHWRHALQF----NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHH
Confidence 45667778888889999999999999999999 8885 89999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+..+++++.++|+++.+++.+|.++.
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=9.7e-10 Score=71.99 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
...+..+...|..+...| ++++|+..|.+++.+.+. .+..+.++.++|.++..+|++++|+..+++++.++|.+..+
T Consensus 32 ~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 345788899999999999 999999999999988222 12245689999999999999999999999999999999999
Q ss_pred HHHhhccCc
Q 033440 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
+..+|.++.
T Consensus 109 ~~~la~i~~ 117 (168)
T CHL00033 109 LNNMAVICH 117 (168)
T ss_pred HHHHHHHHH
Confidence 999887764
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.13 E-value=4.1e-10 Score=77.72 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=83.1
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+..+.-.+|++...+..+|...++.| +|..|+..++++..+ .|+++.++..+|.+|.++|++++|...|.++
T Consensus 87 ~~~~~~~~~~~~d~~ll~~~gk~~~~~g--~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 87 AVLQKSAIAYPKDRELLAAQGKNQIRNG--NFGEAVSVLRKAARL----APTDWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred HHHhhhhccCcccHHHHHHHHHHHHHhc--chHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 3344444457888888888999999999 999999999999999 9999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHhhccCc
Q 033440 98 LKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 98 l~l~p~~~~a~~~~a~~~~ 116 (119)
+++.|+.+....++|..++
T Consensus 161 l~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 161 LELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHhccCCchhhhhHHHHHH
Confidence 9999999999999988663
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=8.6e-10 Score=67.37 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN--- 104 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--- 104 (119)
+..++.+|..++..| ++++|+..|.+++.. .|++ +.+++.+|.++...|++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAG--DYADAIQAFQAFLKK----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 356789999999998 999999999999998 6654 6789999999999999999999999999999885
Q ss_pred HHHHHHhhccCc
Q 033440 105 VKVVILCSGSHP 116 (119)
Q Consensus 105 ~~a~~~~a~~~~ 116 (119)
+.+++.+|.++.
T Consensus 76 ~~~~~~~~~~~~ 87 (119)
T TIGR02795 76 PDALLKLGMSLQ 87 (119)
T ss_pred cHHHHHHHHHHH
Confidence 678888887764
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.6e-09 Score=61.96 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=77.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+..+....|.....+..+|.++...+ ++++|+..+++++.. .|.+..++..+|.++...|++++|..
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG--KYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHHHHhHHHHHH
Confidence 345677788888888888899999999999988 999999999999999 88888999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 033440 93 DAEEALKLCPT 103 (119)
Q Consensus 93 ~~~~al~l~p~ 103 (119)
.+.++++.+|.
T Consensus 90 ~~~~~~~~~~~ 100 (100)
T cd00189 90 AYEKALELDPN 100 (100)
T ss_pred HHHHHHccCCC
Confidence 99999998874
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=4.4e-10 Score=80.83 Aligned_cols=88 Identities=26% Similarity=0.308 Sum_probs=83.0
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.-+|.++....++|+.++.+| ++..|+..|..||+. +|++..+++.||.+|+.+|+-.-|+.++.++|++.|++
T Consensus 32 ~~~~advekhlElGk~lla~~--Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARG--QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 347889999999999999998 999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcCC
Q 033440 105 VKVVILCSGSHPNQ 118 (119)
Q Consensus 105 ~~a~~~~a~~~~~~ 118 (119)
.-+...+|.++++|
T Consensus 106 ~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHhchhhhhc
Confidence 99999999988764
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=6.6e-10 Score=78.08 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------------------------CCcchHHHHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------------------------SDSENSVLYANRA 78 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~a 78 (119)
.++..|...|..+.+.| ++++|++.|++++++.|. ..|.++.++..+|
T Consensus 144 ~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLG--DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp T-HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 44555555666666655 566666666666655321 0455666778889
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|++++|+..++++++.+|+++..+...|.++.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HHhccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999888764
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=1.3e-09 Score=74.31 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+.+..++|..|++.| |+..|...+++||++ +|++..+|..++.+|.++|..+.|-+.|++++.++|++..++.+
T Consensus 35 a~arlqLal~YL~~g--d~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 35 AKARLQLALGYLQQG--DYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 455566777777766 777777777777777 77777777777777777777777777777777777777766666
Q ss_pred hhccC
Q 033440 111 CSGSH 115 (119)
Q Consensus 111 ~a~~~ 115 (119)
-|--+
T Consensus 109 YG~FL 113 (250)
T COG3063 109 YGAFL 113 (250)
T ss_pred hhHHH
Confidence 55433
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=8.3e-10 Score=75.52 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
++..+..++.+|..++..| +|++|+..+++++.. .|.++ .+++.+|.++..+|++++|+..++++++..|+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 4456788999999999999 999999999999999 77654 67899999999999999999999999999998
Q ss_pred CHH---HHHHhhccCcC
Q 033440 104 NVK---VVILCSGSHPN 117 (119)
Q Consensus 104 ~~~---a~~~~a~~~~~ 117 (119)
++. +++.+|.+++.
T Consensus 103 ~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYN 119 (235)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 776 78888888754
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=99.06 E-value=1e-09 Score=71.48 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 22 AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+..+.++..+..+..|-.+++.| ++++|...|+-.... +|.++..+..+|.|+..+++|++|+..|..+..++
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQG--RLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344567888899999999999998 999999999999999 99999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccCcC
Q 033440 102 PTNVKVVILCSGSHPN 117 (119)
Q Consensus 102 p~~~~a~~~~a~~~~~ 117 (119)
++++...|..|.|++.
T Consensus 102 ~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 102 KNDYRPVFFTGQCQLL 117 (165)
T ss_pred cCCCCccchHHHHHHH
Confidence 9999999999988854
No 66
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.5e-09 Score=75.31 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=85.8
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRA 90 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A 90 (119)
+.-+..++..+..||++++.|..+|.+|+..| ++..|+..|.+|+.+ .|+++.++...|.+++... .-.++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--~~~~A~~AY~~A~rL----~g~n~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALG--RASDALLAYRNALRL----AGDNPEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence 34455567777889999999999999999999 999999999999999 9999999999999887653 37788
Q ss_pred HHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 91 FTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
...+++++++||+++.+.+.+|..+++
T Consensus 213 ~~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 213 RALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 899999999999999999999887654
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.04 E-value=1.6e-09 Score=88.82 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH--------------HHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV--------------LYANRA 78 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~a 78 (119)
.++++..+++++.++|+++..+..+|..+++.| ++++|+..|+++++. +|++.. .....|
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQG--DRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHHHHHHHH
Confidence 346677788888888988899999999999988 899999999999888 443321 122345
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++...|++++|+..++++++++|++..+++.+|.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA 395 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555566666666666666666666666666555554
No 68
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.03 E-value=8e-11 Score=86.98 Aligned_cols=81 Identities=32% Similarity=0.446 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..+...++.++... +|+.|+..|.+||++ +|+.+.++.+|+.++++.++|..|+.|+.++++++|...++|++
T Consensus 4 a~e~k~ean~~l~~~--~fd~avdlysKaI~l----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 4 AEELKNEANEALKDK--VFDVAVDLYSKAIEL----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hhhhhhHHhhhcccc--hHHHHHHHHHHHHhc----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 556678899999988 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhccCcC
Q 033440 111 CSGSHPN 117 (119)
Q Consensus 111 ~a~~~~~ 117 (119)
+|.+++.
T Consensus 78 rg~a~m~ 84 (476)
T KOG0376|consen 78 RGTAVMA 84 (476)
T ss_pred ccHHHHh
Confidence 9887654
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.03 E-value=2.4e-09 Score=87.87 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=82.7
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH--------------
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA-------------- 78 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a-------------- 78 (119)
.+++...++++..++|+++.++..+|.++...| ++++|+..|++++.+ +|.+..++..++
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--DYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 345677788888999999999999999999988 999999999999999 777766554444
Q ss_pred ----------------------------HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 79 ----------------------------HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 79 ----------------------------~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999887753
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=7.8e-10 Score=83.18 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+++++.++.++..+|.+...|..+|..+-... +.++||..|++|+.+ .|...-+.+|+|.+++.+|-|++|+.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 457889999999999999999999999998876 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 033440 93 DAEEALKLCPT 103 (119)
Q Consensus 93 ~~~~al~l~p~ 103 (119)
++-.||.+.+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 99999998754
No 71
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=3.6e-09 Score=82.57 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=66.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+....+..+|..++..| ++++|+..+++++.. +|.+..++..+|.++...|++++|+..
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN--RFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 34555566666666666677777777777766 777777777777776 666777777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|+++.+++.++.++
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHH
Confidence 7777777777777666666554
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.99 E-value=4.6e-10 Score=65.60 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 48 HYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+.|+..++++++. .|. +...++.+|.|++++|+|++|+..+++ ++.+|.++..++.+|+|++.
T Consensus 4 ~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 4 NYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp -HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999 663 677888899999999999999999999 88999999999999998754
No 73
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.5e-09 Score=74.86 Aligned_cols=78 Identities=26% Similarity=0.270 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...+.+++.++.+.+ +|.+|+...+++|++ +|+|..++|.+|.++..+|+|+.|+.+++++++++|+|-.+...
T Consensus 257 ~~~~lNlA~c~lKl~--~~~~Ai~~c~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 257 LACHLNLAACYLKLK--EYKEAIESCNKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHhhHHHHHHHhhh--hHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 556788999999998 999999999999999 99999999999999999999999999999999999999877766
Q ss_pred hhcc
Q 033440 111 CSGS 114 (119)
Q Consensus 111 ~a~~ 114 (119)
+..+
T Consensus 331 l~~l 334 (397)
T KOG0543|consen 331 LIKL 334 (397)
T ss_pred HHHH
Confidence 5543
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.99 E-value=4.8e-09 Score=81.90 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=68.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++...++.+....|.+...+..+|..+...| ++++|+..|+++++. .|.++..+..+|.++...|++++|+..+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAG--DLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555666666777777777777777 777777777777777 7777777777777777777777777777
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++.+|++..+++.++.++
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHH
Confidence 777777777777776666554
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.98 E-value=5.1e-09 Score=82.88 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=77.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|.++..+..+|..+...| ++++|+..+.+++.. .|+++. +..+|.++...|++++|+..
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAG--QYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 35667777777788888888888888888877 888888888888888 888888 88888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|++..+++.++.++
T Consensus 139 l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888887777655
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=1.3e-08 Score=71.47 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=63.2
Q ss_pred hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+++..++...+..|+. +.+++-+|..++..| +|++|+..|.+++..-|. +|..+.+++.+|.++..+|++++|+
T Consensus 161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--KKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHH
Confidence 4445555556666665 467777777777777 778888777777776333 3446677777777777777888888
Q ss_pred HHHHHHHhhCCCCHHHH
Q 033440 92 TDAEEALKLCPTNVKVV 108 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~ 108 (119)
..++++++..|++..+-
T Consensus 238 ~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 238 AVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHCcCCHHHH
Confidence 88887777777765443
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=7.5e-09 Score=70.79 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=76.3
Q ss_pred hhhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH---HHHHHHHHHHHh---
Q 033440 14 ESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLL--- 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l--- 84 (119)
+.++..++.+...+|+.+ .++..+|..++..| ++++|+..|+++++. .|+++. +++.+|.++...
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRL----HPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCCchHHHHHHHHHHHHHhccc
Confidence 456677888888877644 67899999999999 999999999999999 776665 789999999987
Q ss_pred -----cCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 85 -----GNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 85 -----~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
|++++|+..++++++.+|++..++
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 899999999999999999986553
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=1.9e-08 Score=66.16 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=75.0
Q ss_pred hhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----
Q 033440 14 ESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---- 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---- 86 (119)
++++..+.++..+.++ .+..+..+|..+...| ++++|+..|.+++.. .|.++..+.++|.++..+|+
T Consensus 52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--EHDKALEYYHQALEL----NPKQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHhH
Confidence 4566777777766554 3578999999999999 999999999999999 99999999999999999888
Q ss_pred ----------HHHHHHHHHHHHhhCCCCH
Q 033440 87 ----------YRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 87 ----------~~~A~~~~~~al~l~p~~~ 105 (119)
+.+|+..+++++.++|++.
T Consensus 126 ~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 126 AGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 7889999999999999864
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=9.3e-09 Score=80.53 Aligned_cols=91 Identities=5% Similarity=-0.074 Sum_probs=84.0
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+.......|.+++++..+|.+..+.| .+++|...+..++++ .|++..++.+++.++.+++++++|+..+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAH--RSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33334456888999999999999999 999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHhhccCc
Q 033440 100 LCPTNVKVVILCSGSHP 116 (119)
Q Consensus 100 l~p~~~~a~~~~a~~~~ 116 (119)
.+|++..+++.+|.++.
T Consensus 149 ~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 149 GGSSSAREILLEAKSWD 165 (694)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998764
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=1.3e-09 Score=61.08 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 69 ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++..+.++|.+++..|+|++|+..|+++++++|+++.+|+++|.++..
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK 49 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999998854
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.92 E-value=1.4e-08 Score=73.31 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=82.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----------------------------
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----------------------------- 65 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------- 65 (119)
.++.++++++.+.|+..-+-.++|++++++| .+++|...|++.|...|.
T Consensus 90 ~al~Dl~rVlelKpDF~~ARiQRg~vllK~G--ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 90 AALQDLSRVLELKPDFMAARIQRGVVLLKQG--ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG 167 (504)
T ss_pred cchhhHHHHHhcCccHHHHHHHhchhhhhcc--cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 3566777777777777777777777777777 777777777776655331
Q ss_pred ----------------CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 66 ----------------SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 66 ----------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..|+++.++..|+.||..-|.+..||++.+.+-++..++..++|..+..++.
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 3788999999999999999999999999999999999999999999887653
No 82
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1e-08 Score=76.11 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=91.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+.+.++.+.+..|+++-.+--.|.+++..+ +..+|++.+.+++.+ +|..+.+..++|.++++.|++.+|+.
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--KAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 345667788888899999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++..+.-+|+++..|..+|++|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 9999999999999999999998743
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=73.69 Aligned_cols=102 Identities=10% Similarity=-0.018 Sum_probs=81.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+.++...+|+....+..+|..++..| ++++|+..+++++...+........++..+|.++...|++++|+.
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG--EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778888888889999999999999999988 999999999988875111011234577888999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+.++++.+|.+..++..++.++.
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHH
Confidence 999999988888888888777654
No 84
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.90 E-value=2e-08 Score=73.05 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-----HHHHHHHHHHHHHhcCHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-----SVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~a~~~~~l~~~~~A 90 (119)
+...++.+...+|.....+..++..+...| ++++|+..+.+++.. .|.+ ...+.++|.++...|++++|
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 344444544545555666666666666666 666666666666655 3322 22445566666666666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 91 FTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..++++++.+|++..+++.+|.++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHH
Confidence 6666666666666666666665554
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.90 E-value=1.3e-08 Score=80.53 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=87.1
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++.+..+..+...+|..+..+..+|..+.+.| ++++|+..|++++.. +|.++.++..++.++...|++++|+..
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34556677776677888888999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++.+|++.. ++.+|.++.
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHH
Confidence 9999999999999 999988764
No 86
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=1.6e-08 Score=64.56 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---KV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a 107 (119)
+..++..|...++.| +|.+|++.++.....-|. .|-...+...++.+|++.++|++|+..+++-++++|.++ .+
T Consensus 10 ~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKG--NYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 567889999999998 999999999998887333 345567889999999999999999999999999999875 58
Q ss_pred HHHhhccCcCC
Q 033440 108 VILCSGSHPNQ 118 (119)
Q Consensus 108 ~~~~a~~~~~~ 118 (119)
+|.+|.+++.+
T Consensus 87 ~Y~~gL~~~~~ 97 (142)
T PF13512_consen 87 YYMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHHH
Confidence 89999887654
No 87
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.3e-08 Score=68.45 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=81.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAF 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~ 91 (119)
..++.+-......+.+.++|.+++..|+..| +|++|.-+|++.+-+ .|.++.++..+|.+++-+| ++.-|.
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLI----QPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566666677788999999999999999999 999999999999999 9999999999999988765 688899
Q ss_pred HHHHHHHhhCCCCHHHHHHhhc
Q 033440 92 TDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~ 113 (119)
.+|.++++++|.+..+++.+-.
T Consensus 212 kyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHH
Confidence 9999999999988888887644
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=5.7e-08 Score=63.57 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=70.7
Q ss_pred ChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH-------
Q 033440 13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL------- 82 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~------- 82 (119)
.+++...+..+..+.++ .+.++..+|.++...| ++++|+..|.+++.+ .|.....+.++|.++.
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~~----~~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--EHTKALEYYFQALER----NPFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHhhHHHH
Confidence 34566777777766544 4568999999999999 999999999999999 8999999999999998
Q ss_pred HhcCHH-------HHHHHHHHHHhhCCCCH
Q 033440 83 LLGNYR-------RAFTDAEEALKLCPTNV 105 (119)
Q Consensus 83 ~l~~~~-------~A~~~~~~al~l~p~~~ 105 (119)
.+|+++ +|+..+++++..+|++.
T Consensus 125 ~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 125 EQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 777776 56666667888888653
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=2.3e-08 Score=67.64 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---H
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---K 106 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~ 106 (119)
.+..++..|..++..| +|.+|+..|++.+..-|. .|.-+.+.+.+|.++++.|+|.+|+..+++.++..|+++ .
T Consensus 4 ~~~~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQG--DYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 5778999999999999 999999999999998555 566778999999999999999999999999999999764 6
Q ss_pred HHHHhhccCcC
Q 033440 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
++|.+|.+++.
T Consensus 81 A~Y~~g~~~~~ 91 (203)
T PF13525_consen 81 ALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999987654
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.86 E-value=4.4e-08 Score=68.05 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL---YANRAHVNLLLGNYRRAFTDAEEALKLCPTN-- 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-- 104 (119)
.+..++..|..++..| +|++|+..|++.+.. .|..+.+ .+.+|.+++++++|.+|+..+++.+++.|++
T Consensus 31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4667889999999988 999999999999999 6665544 4899999999999999999999999999876
Q ss_pred -HHHHHHhhccC
Q 033440 105 -VKVVILCSGSH 115 (119)
Q Consensus 105 -~~a~~~~a~~~ 115 (119)
+.++|.+|.++
T Consensus 105 ~~~a~Y~~g~~~ 116 (243)
T PRK10866 105 IDYVLYMRGLTN 116 (243)
T ss_pred hHHHHHHHHHhh
Confidence 56889999875
No 91
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.7e-09 Score=77.94 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=53.6
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
-+..+..+.|.++-.+.++|.+.|..+ .|.+|+.+|..+++.++.+.+ .....+.|+|+++.+++.+++||..++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~--~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYE--EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHh--hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 344555566666666666666666655 666666666666643332221 123345566666666666666666666
Q ss_pred HHHhhCCCCHHHHHHhhccC
Q 033440 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++|.+.|.++.+|-.+|.+|
T Consensus 480 ~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHHHcCCCchhHHHHHHHHH
Confidence 66666666666665555544
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=3e-08 Score=76.92 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=89.7
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++++...+..+..++|..+..++..|..+..+| .+.+|...|.-|+.+ +|+.+.....+|.|+.+.|+..-|..
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~--~~~EA~~af~~Al~l----dP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG--QLEEAKEAFLVALAL----DPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH--hhHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 345556777888899999999999999999988 999999999999999 99999999999999999998777777
Q ss_pred --HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 --DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 --~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..+.++++||.+.++||.+|.++..
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988743
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=3.5e-08 Score=68.31 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=86.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.++..+.++..++|++++.|..+|.+|-+.| +++.|-..|.+++++ .|+++.+..|+|..++-.|+++.|...+
T Consensus 118 ~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G--r~~~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 118 EAVSVLRKAARLAPTDWEAWNLLGAALDQLG--RFDEARRAYRQALEL----APNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHHHHHhccCCCChhhhhHHHHHHHHcc--ChhHHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 4556678888899999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++....+.+..+--+++.+.
T Consensus 192 l~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 192 LPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred HHHHhCCCCchHHHHHHHHHH
Confidence 999888887877777776554
No 94
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.82 E-value=2.2e-08 Score=51.60 Aligned_cols=44 Identities=18% Similarity=0.045 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
|.++..+|.+|..+|++++|+..++++++.+|+++.+|..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35678899999999999999999999999999999999988864
No 95
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.82 E-value=6.4e-08 Score=61.25 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC----H
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN----V 105 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~ 105 (119)
.+..+-..|..+-..| +.+.|++.|.++|.+ .|.++.+|.||+.++...|+.++|+.++++++++..+. .
T Consensus 42 ~S~~LEl~~valaE~g--~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 42 ASRELELKAIALAEAG--DLDGALELFGQALCL----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 4566777888888888 999999999999999 99999999999999999999999999999999987543 3
Q ss_pred HHHHHhhccC
Q 033440 106 KVVILCSGSH 115 (119)
Q Consensus 106 ~a~~~~a~~~ 115 (119)
.++..+|.+|
T Consensus 116 qa~vQRg~ly 125 (175)
T KOG4555|consen 116 QAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.8e-09 Score=77.26 Aligned_cols=83 Identities=31% Similarity=0.448 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.+++....+|+.+++.. +|..|+..|+.||++ +|+++..|.+|+.+++.+++|++|..++++.++++|..++++
T Consensus 47 ~~Ae~~k~~gn~~yk~k--~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQK--TYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred HHHHHHHhhcchHHHHh--hHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 36777889999999977 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhccCcC
Q 033440 109 ILCSGSHPN 117 (119)
Q Consensus 109 ~~~a~~~~~ 117 (119)
.+.++|+..
T Consensus 121 ~r~~~c~~a 129 (486)
T KOG0550|consen 121 LREGQCHLA 129 (486)
T ss_pred cchhhhhhh
Confidence 999988753
No 97
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.1e-07 Score=64.17 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred HHhHHHHHHhcHH-----HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 17 KADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 17 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
...+..++.+.|. .+..|.++|.++.+.+ .++.|+...+++|++ .|.+-.++..||.+|-++.+|++|+
T Consensus 115 ~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 115 NSKYQEALESCPSTSTEERSILYSNRAAALIKLR--KWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--hHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHH
Confidence 3344445554443 4566788999999999 899999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHhh
Q 033440 92 TDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a 112 (119)
.+|.++++++|....+.-..+
T Consensus 189 eDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 189 EDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHhCcchHHHHHHHH
Confidence 999999999998876654433
No 98
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.77 E-value=1.9e-08 Score=48.81 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+.+++++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888999999999999999999999988864
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.76 E-value=1.1e-07 Score=74.90 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=85.2
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.+.+..++.++|..+.+|+.+|.+|-++| |.++++.....|--+ +|.+...|..++.....+|++.+|+-+|
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556777888889999999999999999988 999999998888888 8888899999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|+..+|.+++..++++..|-
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999998887663
No 100
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=7.2e-08 Score=71.67 Aligned_cols=89 Identities=18% Similarity=0.118 Sum_probs=82.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
..++....+++..+++.++.++..+|......+ +++.|+..+++|+.+ +|+.+.+++..|.+....|+.++|+.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~--~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSG--QAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--chhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 345667788889999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHH
Q 033440 93 DAEEALKLCPTNVKV 107 (119)
Q Consensus 93 ~~~~al~l~p~~~~a 107 (119)
..+++++++|....+
T Consensus 394 ~i~~alrLsP~~~~~ 408 (458)
T PRK11906 394 CIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHhccCchhhHH
Confidence 999999999976554
No 101
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.5e-07 Score=71.14 Aligned_cols=75 Identities=29% Similarity=0.415 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+.++|..+-+.+ .+++|+..|+++|.+ .|.++.+|...|.||..+|+++.|+..+.++|.++|++..+--.+
T Consensus 456 p~~~NLGH~~Rkl~--~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLN--KYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHhHHHHHHHHh--hHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34789999999988 999999999999999 999999999999999999999999999999999999996544443
Q ss_pred h
Q 033440 112 S 112 (119)
Q Consensus 112 a 112 (119)
+
T Consensus 530 ~ 530 (611)
T KOG1173|consen 530 K 530 (611)
T ss_pred H
Confidence 3
No 102
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.71 E-value=3.7e-08 Score=69.20 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=59.0
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++.+.+....... .++..+......+...+ +++++...+.++... +. .+.++.++..+|.++.+.|++++|+.++
T Consensus 95 ~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~--~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 95 EALKLAEKAYERD-GDPRYLLSALQLYYRLG--DYDEAEELLEKLEEL-PA-APDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ------------------------H-HHHTT---HHHHHHHHHHHHH--T----T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc-cccchhhHHHHHHHHHh--HHHHHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444443333 45677777888889988 999999999997765 11 3678899999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++++++|+++.++..++.++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999988877654
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=6.8e-08 Score=76.56 Aligned_cols=98 Identities=20% Similarity=0.244 Sum_probs=85.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-+.+...+..+....|++...+..++.+.|+.+ ||-.|+.+|..++.++|.. .+.....+|+|+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk--dY~~al~yyk~al~inp~~---~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKK--DYRGALKYYKKALRINPAC---KADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc--cHHHHHHHHHHHHhcCccc---CCCccchhhhHHHhccchhhHHH
Confidence 456777888899999999999999999999987 9999999999999994442 23445678999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+.++++++|.++.++..+|.+-
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHH
Confidence 99999999999999998888653
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=2e-07 Score=65.55 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=69.2
Q ss_pred HHHHHHHHHHH-HHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC---
Q 033440 31 AIELKEKGNEY-VKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT--- 103 (119)
Q Consensus 31 ~~~~~~~g~~~-~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--- 103 (119)
....+..+..+ ++.| +|++|+..|...+.. .|+. +.+++.+|.+|+..|++++|+..|+++++..|+
T Consensus 142 e~~~Y~~A~~l~~~~~--~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKS--RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 46667777776 5667 999999999999999 7776 579999999999999999999999999998887
Q ss_pred CHHHHHHhhccCc
Q 033440 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
.+.+++.+|.++.
T Consensus 216 ~~dAl~klg~~~~ 228 (263)
T PRK10803 216 AADAMFKVGVIMQ 228 (263)
T ss_pred hhHHHHHHHHHHH
Confidence 4788999888774
No 105
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=2.4e-07 Score=60.52 Aligned_cols=85 Identities=11% Similarity=-0.031 Sum_probs=75.1
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+...+..+...++-+.+-+..+|.++...+ +|++|+..|..+..+ ++++|..++..|.|++.+|+...|...
T Consensus 54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--QFQKACDLYAVAFTL----LKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHc----ccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 34556677777788888999999999999977 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCH
Q 033440 94 AEEALKLCPTNV 105 (119)
Q Consensus 94 ~~~al~l~p~~~ 105 (119)
+..++. .|.+.
T Consensus 128 f~~a~~-~~~~~ 138 (165)
T PRK15331 128 FELVNE-RTEDE 138 (165)
T ss_pred HHHHHh-CcchH
Confidence 999988 45543
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=3.5e-07 Score=69.80 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++.++..+..+|..+...| ++++|...+++|+++ .| ++.+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6667788888999998888 999999999999999 88 5789999999999999999999999999999999875
Q ss_pred HHH
Q 033440 107 VVI 109 (119)
Q Consensus 107 a~~ 109 (119)
-+.
T Consensus 489 ~~~ 491 (517)
T PRK10153 489 LYW 491 (517)
T ss_pred HHH
Confidence 443
No 107
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.67 E-value=9.5e-08 Score=46.10 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+.+++.+|.+++.+|++++|+.+++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888875
No 108
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.65 E-value=3.6e-07 Score=57.05 Aligned_cols=68 Identities=29% Similarity=0.287 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
++++.|..+-..| +.++|+..|+++++.- ...+....++.++|.++..+|++++|+..+++++.-.|+
T Consensus 3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLG--REEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3455555555555 5555555555555531 002223345555555555555555555555555555444
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.62 E-value=8.9e-07 Score=58.60 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=69.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC--------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG- 85 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~- 85 (119)
...+..+.....||.+++.+++=|..+.... +.-+++|+..|++||.+ +|+...+++++|.+|..++
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHh
Confidence 4566677777889999999999888876543 12567788999999999 9999999999999998765
Q ss_pred ----------CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 86 ----------NYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 86 ----------~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.|++|..++.+++..+|+|.....
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 388999999999999998865443
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=5e-07 Score=57.86 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=73.8
Q ss_pred HhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc---hHHHHHHHHHHHHHhcCHHHHH
Q 033440 18 ADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 18 ~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
..++.+...+|+. ..+...+|..++..| ++++|+..|+.++.. .|+ .+.+...+|.+++..|+|++|+
T Consensus 32 ~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~----~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 32 AAAEQLAKDYPSSPYAALAALQLAKAAYEQG--DYDEAKAALEKALAN----APDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3466666666665 677888999999998 999999999999997 443 3568888999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..++. +.-.+..+.++..+|.++..
T Consensus 106 ~~L~~-~~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 106 ATLQQ-IPDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHh-ccCcchHHHHHHHHHHHHHH
Confidence 99966 34445556778888887753
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=6.2e-07 Score=62.27 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=81.1
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++++.++.++..+|++...+...-.+.-.+| .-.+||+.....++. -+.+..++..++.+|+..|.|++|.-+
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--K~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQG--KNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcC--CcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45667777777777777777777777777777 566777777777777 888999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++++-++|.++..+.++|.+++
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHH
Confidence 99999999999999888887764
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=3.1e-07 Score=62.79 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+...+..+.++|+.|-..| -+.-|-..+++++.+ .|..+.+++.+|.-+...|+|+.|...++-++++||.+.-
T Consensus 61 ~eeRA~l~fERGvlYDSlG--L~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 61 DEERAQLLFERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred hHHHHHHHHHhcchhhhhh--HHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 4557888899999999988 899999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhccCc
Q 033440 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
++.++|.+++
T Consensus 135 a~lNRgi~~Y 144 (297)
T COG4785 135 AHLNRGIALY 144 (297)
T ss_pred HHhccceeee
Confidence 9999987653
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=2.4e-07 Score=66.66 Aligned_cols=85 Identities=13% Similarity=0.025 Sum_probs=67.0
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+|.....+...|..+...| ++++|+..+++++++ .|+++.++..+|.++...|++++|+..+.+++...|..
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAG--QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 455666667777888888888 899999999999998 88888888889999999999999999999998887643
Q ss_pred H----HHHHHhhccC
Q 033440 105 V----KVVILCSGSH 115 (119)
Q Consensus 105 ~----~a~~~~a~~~ 115 (119)
+ ..++.+|.++
T Consensus 182 ~~~~~~~~~~la~~~ 196 (355)
T cd05804 182 SMLRGHNWWHLALFY 196 (355)
T ss_pred cchhHHHHHHHHHHH
Confidence 2 2344555554
No 114
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.57 E-value=1.1e-08 Score=73.34 Aligned_cols=83 Identities=27% Similarity=0.340 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.-+.+...+..+..++..| +++.|++.|+.+|.+ .|..+.+|..|+.++++++++..|+.+|..+++++|+..+
T Consensus 110 ~~eqa~e~k~~A~eAln~G--~~~~ai~~~t~ai~l----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDG--EFDTAIELFTSAIEL----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK 183 (377)
T ss_pred HHHHHHHHHHHHHHHhcCc--chhhhhccccccccc----CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence 3445667778888999999 999999999999999 9999999999999999999999999999999999999887
Q ss_pred HHHHhhccC
Q 033440 107 VVILCSGSH 115 (119)
Q Consensus 107 a~~~~a~~~ 115 (119)
.|-.+++++
T Consensus 184 ~ykfrg~A~ 192 (377)
T KOG1308|consen 184 GYKFRGYAE 192 (377)
T ss_pred ccchhhHHH
Confidence 776665543
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=3.9e-07 Score=65.63 Aligned_cols=51 Identities=24% Similarity=0.133 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.|..+..+..+|.++...|++++|+..++++++++|+++.++..+|.+++.
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 455556667788899999999999999999999999999999999988754
No 116
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.57 E-value=3.9e-07 Score=71.83 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.+++.-+.+.+..+.+.| .|.+|++++..++...+ -.+..+|+..|.||..+|.+++|++.|.++|.++|++..+
T Consensus 411 ~d~~dL~~d~a~al~~~~--~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIG--KYKEALRLLSPITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred hhhHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 346778899999999999 99999999999888721 1457899999999999999999999999999999999999
Q ss_pred HHHhhccCcC
Q 033440 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
...++.++.+
T Consensus 486 Ri~Lasl~~~ 495 (895)
T KOG2076|consen 486 RITLASLYQQ 495 (895)
T ss_pred hhhHHHHHHh
Confidence 9999887654
No 117
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=6.2e-07 Score=66.79 Aligned_cols=100 Identities=9% Similarity=-0.027 Sum_probs=87.3
Q ss_pred CChhhHHhHHHHH---HhcHHHHHHHHHHHHHHHHh---C----hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 033440 12 KTESEKADLDAIA---ALKESAAIELKEKGNEYVKK---G----KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~---g----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
..+.+...+.++. .++|..+.++.-++.+++.. | ..+-.+|++...+|+++ +|.|+.++..+|.+.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~Da~a~~~~g~~~ 348 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTVDGKILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 3456667788888 99999999999999998765 0 12456788999999999 999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 82 LLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
...++++.|+..+++++.++|++..+|+..|.++
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999988743
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.54 E-value=2.7e-07 Score=51.01 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=47.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~ 71 (119)
.+++...++.++..+|.++.++..+|.+++..| ++++|+..|+++++. +|++|
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~----~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG--RYDEALAYYERALEL----DPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCC
Confidence 356788899999999999999999999999999 999999999999999 88775
No 119
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.54 E-value=9.3e-07 Score=70.64 Aligned_cols=95 Identities=16% Similarity=0.015 Sum_probs=56.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.++..+.++.+.+|..+.........+...| ++++|+..+++++.- .|.........|.++..+|+|++|+..+
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555566666666665433335555555555 566666666665533 3444444444466676777777777777
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++.+|+++.+++.++..+
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHH
Confidence 777777777776666555544
No 120
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=1.7e-07 Score=69.61 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH---HHHhhccCcC
Q 033440 66 SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV---VILCSGSHPN 117 (119)
Q Consensus 66 ~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~a~~~~~ 117 (119)
.+|+++..++|+|.+|+.+|+|++|+..|+++++++|++..+ ||++|.+|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~ 124 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY 124 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999865 9999998854
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=1.5e-06 Score=64.29 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=62.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+..+..++++.+.+|+ ....++..+...+ +..+|+..+.++|.. .|.+..++..-+..++..++++.|+..
T Consensus 186 ~~ai~lle~L~~~~pe---v~~~LA~v~l~~~--~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 186 DEAIELLEKLRERDPE---VAVLLARVYLLMN--EEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHHHHHHHHHHhcCCc---HHHHHHHHHHhcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3444555555555543 3344566666665 667777777777776 677777777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++++.+.|+....|+.++.+|.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHH
Confidence 77777777777777777777664
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=5.1e-07 Score=72.28 Aligned_cols=100 Identities=15% Similarity=0.017 Sum_probs=81.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---------------CcchHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---------------DSENSVLYANR 77 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~ 77 (119)
.++.+..++.....+|+....++-+|..+++.+ ++..+... .++...+.. .+.+..+++.+
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~--~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L 122 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRR--PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL 122 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc--chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence 456777778888889999999999999999987 77777765 555552111 23444899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|.||-++|++++|...++++++++|+|+.++.++|..|.
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988664
No 123
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.50 E-value=1.7e-07 Score=45.74 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=31.1
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 55 CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 55 ~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.|+++|++ +|+++.+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~----~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL----NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH----CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37899999 99999999999999999999999863
No 124
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.49 E-value=5.5e-07 Score=65.25 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=81.6
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++++.+......+|.++..+.+++..|++.. .|..|....+.||.+ +.....+|..|+.+...+|+..+|-.+
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~AR~~Lg~~~EAKkD 187 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEEDCEAAIAL----DKLYVKAYSRRMQARESLGNNMEAKKD 187 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHhHHHHHHh----hHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 45777788888889988999999999999987 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHH
Q 033440 94 AEEALKLCPTNVKVV 108 (119)
Q Consensus 94 ~~~al~l~p~~~~a~ 108 (119)
|+.+|+++|.+....
T Consensus 188 ~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 188 CETVLALEPKNIELK 202 (536)
T ss_pred HHHHHhhCcccHHHH
Confidence 999999999876544
No 125
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.45 E-value=1.5e-06 Score=66.44 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=79.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhCh------hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK------KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
..+++..++++.+++|+.+.++..++.++..... .+...+.....+++.+ +. +|.++.+|..+|..+...|+
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~-~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PE-LNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-cc-CcCChHHHHHHHHHHHhcCC
Confidence 4577888999999999999999998887765420 0334555555665552 11 56677889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 87 YRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++|...+++++.++| +..+|..+|.++.
T Consensus 436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999999999 5889999997663
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=4e-07 Score=70.60 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+.+.+..|.....++ +|+++.+.++..+++ +|.....|+++|.|..+++++..|..+|...+.++|++..+|.
T Consensus 484 sarA~r~~~~~~~~~~--~fs~~~~hle~sl~~----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 484 SARAQRSLALLILSNK--DFSEADKHLERSLEI----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred hHHHHHhhccccccch--hHHHHHHHHHHHhhc----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence 4445555666666666 888888888888888 8888888888888888888888888888888888888888888
Q ss_pred HhhccCc
Q 033440 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
+++.+|+
T Consensus 558 Nls~ayi 564 (777)
T KOG1128|consen 558 NLSTAYI 564 (777)
T ss_pred hhhHHHH
Confidence 8877664
No 127
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.2e-06 Score=69.70 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
-.++.++.+|..+..+| ||++|-.+|.+++.. +|++ ...++.+|+.|++.|+++.|+..+.++++..|++..+
T Consensus 305 ~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQG--DFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred HHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 34555666666666655 666666666666665 5555 4555666666666666666666666666666666666
Q ss_pred HHHhhccC
Q 033440 108 VILCSGSH 115 (119)
Q Consensus 108 ~~~~a~~~ 115 (119)
..-+|..|
T Consensus 379 m~iLG~Ly 386 (1018)
T KOG2002|consen 379 MKILGCLY 386 (1018)
T ss_pred HHHHHhHH
Confidence 66665554
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=1.9e-06 Score=63.72 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=70.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..+.+..+.+|.++..+..++..+.+.+ +++.|+....+++.. .|++...|+.++.||..+|+|++|+-.+
T Consensus 218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 218 EAIRLLNEALKENPQDSELLNLQAEFLLSKK--KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677788888889999999999999999988 999999999999999 9999999999999999999999999877
Q ss_pred HHH
Q 033440 95 EEA 97 (119)
Q Consensus 95 ~~a 97 (119)
+-+
T Consensus 292 Ns~ 294 (395)
T PF09295_consen 292 NSC 294 (395)
T ss_pred hcC
Confidence 643
No 129
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.5e-07 Score=69.13 Aligned_cols=71 Identities=24% Similarity=0.260 Sum_probs=37.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
.+.+..++.=++.++.+.||..|.+| |+++|.+.|.+++.- +.....+++|.|..+..+|+.++|+..+-+
T Consensus 479 ad~aln~dryn~~a~~nkgn~~f~ng--d~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 479 ADIALNIDRYNAAALTNKGNIAFANG--DLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHhcccccCHHHhhcCCceeeecC--cHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 33344444445555666666666655 666666666666655 444444444444444444444444444444
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=1.6e-06 Score=48.85 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=54.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
.++..+.++.+..++|+++..+...|.++++.| +|++|+..++++++. .|+++.+...++
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~l~~----~p~~~~~~~~~a 70 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLFQLG--RYEEALEDLERALEL----SPDDPDARALRA 70 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCcHHHHHHHH
Confidence 457888999999999999999999999999999 999999999999999 898887766554
No 131
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.43 E-value=2e-07 Score=69.38 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=86.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.++..+.+++.++|+.+.-+.+++..+++.+ +|..|+....+||+. +|....+|+.+|.+.+.++++.+|+.+
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e--~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVE--SFGGALHDALKAIEL----DPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeec--hhhhHHHHHHhhhhc----CchhhheeeeccHHHHhHHHHHHHHHH
Confidence 45667788889999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhc
Q 033440 94 AEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~ 113 (119)
+++...+.|+.+.+......
T Consensus 95 l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHhhhcCcCcHHHHHHHHH
Confidence 99999999999988765543
No 132
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=5e-07 Score=61.80 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=78.7
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+.-++++...++|+.+..+.-+|.-+...| +|+.|.+.|+..+++ +|..--++.|||..++--|+|.-|..++.
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~--~fdaa~eaFds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcc--cchHHHHHhhhHhcc----CCcchHHHhccceeeeecCchHhhHHHHH
Confidence 345678889999999999999999999999 999999999999999 99999999999999999999999999999
Q ss_pred HHHhhCCCCH
Q 033440 96 EALKLCPTNV 105 (119)
Q Consensus 96 ~al~l~p~~~ 105 (119)
+--.-||.+|
T Consensus 158 ~fYQ~D~~DP 167 (297)
T COG4785 158 AFYQDDPNDP 167 (297)
T ss_pred HHHhcCCCCh
Confidence 9999998875
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=1e-06 Score=62.80 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=59.1
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.++.....+.+........+++.+..|++.+++|...|++.... .+.++.++...+.|++.+|+|++|.+.+.+++
T Consensus 153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444444555566666644677888888776665 66777777778888888888888888888888
Q ss_pred hhCCCCHHHHHHhhcc
Q 033440 99 KLCPTNVKVVILCSGS 114 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~ 114 (119)
..+|.++.++.+++.+
T Consensus 229 ~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVC 244 (290)
T ss_dssp CC-CCHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHH
Confidence 8888777777776543
No 134
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=3.8e-07 Score=65.68 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=63.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
++.+.+..+.+.+|.+.++..-.|.-||-.+ +++-|+++|++.+.+ .-.++.++.|+|.|.+-.++++-++..+
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~--~PE~AlryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDN--NPEMALRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCC--ChHHHHHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 3445556666666666666666666666666 677777777777776 6667777777777777777777777777
Q ss_pred HHHHhhC--CC-CHHHHHHhhccC
Q 033440 95 EEALKLC--PT-NVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~--p~-~~~a~~~~a~~~ 115 (119)
.+++..- |+ -.+.||++|.+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeE
Confidence 7777653 32 256777776653
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.41 E-value=1.6e-06 Score=67.65 Aligned_cols=86 Identities=20% Similarity=0.123 Sum_probs=79.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHH--HHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAID--CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++...+..++.++|++......+|.++...| +..-|.. ..+.++++ +|.++.+|+++|.++.++|+.++|.
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~----dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRL----DPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccchHHHH
Confidence 45677888899999999999999999999999 7777777 89999999 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCCH
Q 033440 92 TDAEEALKLCPTNV 105 (119)
Q Consensus 92 ~~~~~al~l~p~~~ 105 (119)
..|.-++.+++.+|
T Consensus 775 ecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 775 ECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhhccCCC
Confidence 99999999998765
No 136
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.39 E-value=8.1e-06 Score=51.86 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=76.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+++.+.+++.+.|..+.+|.+++..+--+| +.++|++.+++++++.......--.+|..||..|..+|+-+.|..
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQG--DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 345677788888889999999999999999988 999999999999998433223344689999999999999999999
Q ss_pred HHHHHHhhCCCCH
Q 033440 93 DAEEALKLCPTNV 105 (119)
Q Consensus 93 ~~~~al~l~p~~~ 105 (119)
++..+-++...+.
T Consensus 137 DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 137 DFEAAAQLGSKFA 149 (175)
T ss_pred hHHHHHHhCCHHH
Confidence 9999888765443
No 137
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=1.8e-06 Score=66.35 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=83.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+..+.++++++..|++++++..+|..+...| +-++|..+...++.. ++.....+...|.++..-++|.+||..|
T Consensus 25 kgLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred hHHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4556777888889999999999999999999 889999999999998 8889999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.|+.++|+|...|+-++...
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHH
Confidence 999999999999888877543
No 138
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=1.2e-05 Score=51.53 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=72.0
Q ss_pred hHHhHHHHHHhcH---HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC------
Q 033440 16 EKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN------ 86 (119)
Q Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~------ 86 (119)
+++.++.+....| --..+-..+|-.+++.+ +|.+|+..+++-|++-|. +|.-+-+++.+|.+++.+..
T Consensus 29 A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~~~~~~~~~~~ 105 (142)
T PF13512_consen 29 AIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--DYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYYEQDEGSLQSF 105 (142)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHHhhhHHhhh
Confidence 3444555544433 24466778999999998 999999999999999665 55666899999999999987
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHH
Q 033440 87 ---------YRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 87 ---------~~~A~~~~~~al~l~p~~~~a 107 (119)
..+|+.+++++++.-|++..+
T Consensus 106 ~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 106 FRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999988654
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=5.8e-06 Score=52.87 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=63.7
Q ss_pred ChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+++...+..+....++ ...+...++.+++..| +|++|+..+.. +.- .+..+.++..+|.++...|++++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~--~~d~Al~~L~~-~~~----~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQG--QYDEALATLQQ-IPD----EAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHh-ccC----cchHHHHHHHHHHHHHHCCCHHH
Confidence 34566777777665432 3557778999999998 99999999966 333 57788899999999999999999
Q ss_pred HHHHHHHHH
Q 033440 90 AFTDAEEAL 98 (119)
Q Consensus 90 A~~~~~~al 98 (119)
|+..|+++|
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999875
No 140
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.33 E-value=1.7e-06 Score=44.45 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
..+..+|..+...| ++++|++.|+++|+. +|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G--~~~~A~~~~~~~l~~----~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLG--QPDEAERLLRRALAL----DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence 56788999999999 999999999999999 9999999988875
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.31 E-value=2.5e-06 Score=47.36 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=53.7
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.++++..++.+...+|++...+..+|.++++.| ++++|...+.+++.. +|+++.++.-++.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~----~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--QYDEAEELLERLLKQ----DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGG----GTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCHHHHHHHHhc
Confidence 356888999999999999999999999999999 999999999999999 9998877766554
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=3.9e-06 Score=62.66 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|....+.+..+...+..| +++.|+..++..+.. .|+|+.+....+.++++.++.++|++.+++++.++|+.+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~--~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG--QYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred ccchHHHHHHHHHHHHhc--ccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 567788899999999999 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhccCcC
Q 033440 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
++.+|.+|++
T Consensus 377 ~~~~a~all~ 386 (484)
T COG4783 377 QLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.30 E-value=2.5e-06 Score=41.11 Aligned_cols=34 Identities=35% Similarity=0.665 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN 70 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~ 70 (119)
+..|..+|.+++..| ++++|+..|+++|++ +|++
T Consensus 1 a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG--DYEEALEYYQRALEL----DPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTH
T ss_pred CHHHHHHHHHHHHhC--CchHHHHHHHHHHHH----CcCC
Confidence 468999999999999 999999999999999 8764
No 144
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.29 E-value=1.8e-05 Score=55.06 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---H
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---K 106 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~ 106 (119)
-+..|++.|....+.| +|++|+..|+.....-|. .|....+...++.++++-++|++|+...++=+++.|+++ .
T Consensus 33 p~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKG--NYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 3778999999999988 999999999999988444 455667889999999999999999999999999998764 5
Q ss_pred HHHHhhccCcCC
Q 033440 107 VVILCSGSHPNQ 118 (119)
Q Consensus 107 a~~~~a~~~~~~ 118 (119)
++|.+|.+++.+
T Consensus 110 ~~YlkgLs~~~~ 121 (254)
T COG4105 110 AYYLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHHHhcc
Confidence 778888776554
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=3.2e-06 Score=65.76 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=83.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+..+.++...+++|-....|+..|.++.+.+ +++.|+..|...+.+ +|++...++|++..|.++|+-.+|...
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqle--k~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHh--hhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 45677888889999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHH
Q 033440 94 AEEALKLCPTNVKVVIL 110 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~ 110 (119)
..++++-+-.++..|-+
T Consensus 576 l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 576 LKEALKCNYQHWQIWEN 592 (777)
T ss_pred HHHHhhcCCCCCeeeec
Confidence 99999988766665543
No 146
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.27 E-value=2.5e-06 Score=41.07 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+++.+|.++..+|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467788888888888888888888888888854
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.26 E-value=9.5e-06 Score=60.03 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=65.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++.++.++...+.+|+++..+..+|..+.+.+ +|.+|.+.|+++++. .|++.. +..++.++.++|+.++|..
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~--~~~~A~~~le~al~~----~P~~~~-~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG--EWQEASLAFRAALKQ----RPDAYD-YAWLADALDRLHKPEEAAA 382 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 445667777777888888888888888888887 888888888888888 777655 4568888888888888888
Q ss_pred HHHHHHhhC
Q 033440 93 DAEEALKLC 101 (119)
Q Consensus 93 ~~~~al~l~ 101 (119)
.|++++.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 888887754
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.26 E-value=1.1e-05 Score=59.76 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=74.0
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+.+.+.+..+..|+....+.-.|..+.++| +++.|..++.++.+. .|++. .+....+..++..|++++|+..
T Consensus 102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--DEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445555555556655666677788888888 899999999998887 77664 4555568888889999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++.++..|+++.++...+.++.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~ 198 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYI 198 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999888888777664
No 149
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.2e-05 Score=59.46 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=83.6
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.-+++.+.+++.++++|....+-..++..+...| .+..++.++++++.. .| +..++..+|.++.-.+.+.+|+
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~----~~-D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG--PTKDIIKLLEKHLII----FP-DVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhh----cc-ccHHHHHHHHHHHHhhhHHHHH
Confidence 3467888899999999999999999999999999 999999999999998 66 5567899999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHh
Q 033440 92 TDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~ 111 (119)
++|..+|++||.+..+.-.+
T Consensus 492 ~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 492 EYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhcCccchHHHHHH
Confidence 99999999999998776543
No 150
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.25 E-value=9.4e-06 Score=65.04 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=58.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...+++...-.+.....+..+|..+...| +|++|++.|+++++. +|+++.++..++..+...+++++|+.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--dyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEK--RWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 345555666655333444555555566777766 777777777777777 77777777777777777777777777
Q ss_pred HHHHHHhhCCCCHH
Q 033440 93 DAEEALKLCPTNVK 106 (119)
Q Consensus 93 ~~~~al~l~p~~~~ 106 (119)
.+++++..+|.+..
T Consensus 158 ~l~~l~~~dp~~~~ 171 (822)
T PRK14574 158 QATELAERDPTVQN 171 (822)
T ss_pred HHHHhcccCcchHH
Confidence 77777777776443
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.25 E-value=2e-05 Score=54.83 Aligned_cols=88 Identities=18% Similarity=0.141 Sum_probs=70.5
Q ss_pred hhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-----
Q 033440 15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----- 86 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----- 86 (119)
+++..++.+....|... .+...+|..+++.+ +|++|+..+++.+..-|+ +|..+.+++.+|.++..++.
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~~~~~~~ 126 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALDDSALQG 126 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcchhhhhh
Confidence 45566777777766543 34578999999998 999999999999999666 56777899999999766641
Q ss_pred -------------HHHHHHHHHHHHhhCCCCH
Q 033440 87 -------------YRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 87 -------------~~~A~~~~~~al~l~p~~~ 105 (119)
-.+|+..+++.++.-|++.
T Consensus 127 ~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 127 FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred ccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 3578999999999999874
No 152
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.24 E-value=4.1e-06 Score=40.17 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN 70 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~ 70 (119)
+..+..+|..++..| +|++|+..|++++.+ +|++
T Consensus 1 a~~~~~lg~~~~~~~--~~~~A~~~~~~al~l----~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG--NYEEAIEYFEKALEL----DPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTS
T ss_pred CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CcCC
Confidence 467899999999999 999999999999999 7764
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.24 E-value=3.4e-05 Score=48.19 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=70.1
Q ss_pred ChhhHHhHHHHHHh---cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc---hHHHHHHHHHHHHHhcC
Q 033440 13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~ 86 (119)
.+++++.++++... .+....++..+|..+...| ++++|+..+++++.. .|+ +..+....+.++..+|+
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~----~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--RYDEALALLEEALEE----FPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHHCCC
Confidence 45677888887765 4455788999999999999 999999999999998 666 77888889999999999
Q ss_pred HHHHHHHHHHHHhh
Q 033440 87 YRRAFTDAEEALKL 100 (119)
Q Consensus 87 ~~~A~~~~~~al~l 100 (119)
+++|+..+-.++.-
T Consensus 91 ~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 91 PKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887763
No 154
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.21 E-value=1.5e-05 Score=59.06 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=54.9
Q ss_pred hhHHhHHHHHHhcHHHH--HHHHHHHHHHHHhChhcHHHHHHHHH--HHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 15 SEKADLDAIAALKESAA--IELKEKGNEYVKKGKKHYSDAIDCYT--RAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
+..+.+++..+.+|+++ ..+..+|..+++.| +|++|.++++ .+++. .|++.. +..+|.++.++|+.++|
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~----~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG--EFIEAADAFKNVAACKE----QLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhc----CCCHHH-HHHHHHHHHHcCCHHHH
Confidence 45556666667777777 66667777777777 7777777777 46666 665554 44677777777777777
Q ss_pred HHHHHHHHhh
Q 033440 91 FTDAEEALKL 100 (119)
Q Consensus 91 ~~~~~~al~l 100 (119)
.+.+++++.+
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 7777776553
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.2e-05 Score=55.62 Aligned_cols=86 Identities=16% Similarity=0.124 Sum_probs=76.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHH-HhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYV-KKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+...+..+..+.|++++.+...|.+++ +.|+.+-.++...+++++.+ +|.++.+.+-+|..++..|+|.+|+..
T Consensus 174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----D~~~iral~lLA~~afe~g~~~~A~~~ 249 (287)
T COG4235 174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----DPANIRALSLLAFAAFEQGDYAEAAAA 249 (287)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 3557788889999999999999988874 44445778899999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q 033440 94 AEEALKLCPTN 104 (119)
Q Consensus 94 ~~~al~l~p~~ 104 (119)
.+..+++.|.+
T Consensus 250 Wq~lL~~lp~~ 260 (287)
T COG4235 250 WQMLLDLLPAD 260 (287)
T ss_pred HHHHHhcCCCC
Confidence 99999988754
No 156
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=59.99 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=75.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++-++..+.++++.-...++.+.+.|.+++-.+ +++-++..+.+|+..... +..-+++|+|+|.+..-.|++.-|..
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaq--Q~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ--QIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc--chhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHHHH
Confidence 345666777777777777888888888888877 888888888888876332 33456788888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHhhc
Q 033440 93 DAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~ 113 (119)
.++-+|..||++..++.++|.
T Consensus 417 cfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHHHHhccCcchHHHHHhHHH
Confidence 888888888888888887765
No 157
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=2.5e-05 Score=58.72 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=84.8
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++.+-+..++..+.+-.+++++.|..+-..| +.++|+++|-+.-.+ --+++.+++.++.+|..+.+..+||+.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~--~ldeald~f~klh~i----l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALG--NLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--CHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45666677777778888999999999999988 999999999887777 678899999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+.++..+-|+++..+..+|..|-
T Consensus 581 ~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhh
Confidence 99999999999999998888764
No 158
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.15 E-value=3.6e-05 Score=58.65 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=70.9
Q ss_pred hhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHHH
Q 033440 15 SEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVNL 82 (119)
Q Consensus 15 ~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~ 82 (119)
++...+..+..+ .|..+......|..|...+ +|.+|+..|.+|+.+.. ..+|.-+.++.|+|..|.
T Consensus 217 ~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 217 KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 445555555555 6777777778999999998 99999999999998743 347788899999999999
Q ss_pred HhcCHHHHHHHHHHHHhhC
Q 033440 83 LLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~ 101 (119)
+.|+|++|..+|.+|+++-
T Consensus 295 ~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ccCChHHHHHHHHHHHHHH
Confidence 9999999999999999873
No 159
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.2e-05 Score=55.60 Aligned_cols=80 Identities=14% Similarity=0.044 Sum_probs=75.3
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.++..+.+++.++|.-+.-+.+.+.++++.. +|+.+...-.+++++ +|+....++-+|.+++....|.+||..+
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~--~~~~v~~dcrralql----~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLK--HWEPVEEDCRRALQL----DPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhh--hhhhhhhhHHHHHhc----ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4667888999999999999999999999987 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhh
Q 033440 95 EEALKL 100 (119)
Q Consensus 95 ~~al~l 100 (119)
.++..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 999665
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.14 E-value=3e-05 Score=59.28 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
+++.+.-...++...| ++++|++.+...... -.+...+.-.+|.+++++|++++|...|+..|+.+|+|..-|.
T Consensus 3 ~SE~lLY~~~il~e~g--~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 3 HSELLLYKNSILEEAG--DYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3556666777788888 999999999888777 7888999999999999999999999999999999999999888
Q ss_pred HhhccC
Q 033440 110 LCSGSH 115 (119)
Q Consensus 110 ~~a~~~ 115 (119)
.+..+.
T Consensus 77 ~L~~~~ 82 (517)
T PF12569_consen 77 GLEEAL 82 (517)
T ss_pred HHHHHH
Confidence 876664
No 161
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.12 E-value=1.6e-05 Score=42.58 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.++.+|..++++|+|.+|...++.+|+++|+|..+.-.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3567799999999999999999999999999998876544
No 162
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.11 E-value=4.8e-05 Score=56.33 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHH-HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 32 IELKEK-GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 32 ~~~~~~-g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
..++.+ +....+.| +++.|..++.++.+. +|++.... ...+..+...|++++|+..++++++.+|+++.++.
T Consensus 118 ~l~~llaA~aA~~~g--~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ 191 (398)
T PRK10747 118 VVNYLLAAEAAQQRG--DEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR 191 (398)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 333344 44448877 899999999999888 77764333 34478888899999999999999999999998888
Q ss_pred HhhccCc
Q 033440 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
.++.+|.
T Consensus 192 ll~~~~~ 198 (398)
T PRK10747 192 LAEQAYI 198 (398)
T ss_pred HHHHHHH
Confidence 8777664
No 163
>PRK10941 hypothetical protein; Provisional
Probab=98.09 E-value=6.4e-05 Score=53.08 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
.+-+.++=..+.+.+ +++.|+.+.+..+.+ .|+++.-+..||.+|.++|.+..|+.|++.-++..|+.+.+-.-
T Consensus 181 ~Rml~nLK~~~~~~~--~~~~AL~~~e~ll~l----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEK--QMELALRASEALLQF----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 344567777888988 999999999999999 99999999999999999999999999999999999999887765
Q ss_pred hhc
Q 033440 111 CSG 113 (119)
Q Consensus 111 ~a~ 113 (119)
+.+
T Consensus 255 k~q 257 (269)
T PRK10941 255 RAQ 257 (269)
T ss_pred HHH
Confidence 544
No 164
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=5.8e-05 Score=52.89 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---VKVVIL 110 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 110 (119)
+++.+..+++.| +|..|...|..-|..-|. .+-.+.++|=+|.+++.+|+|++|...|..+.+-.|.+ +++++.
T Consensus 144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 555555666655 566666666666655121 11233455556666666666666666666665554433 345555
Q ss_pred hhccC
Q 033440 111 CSGSH 115 (119)
Q Consensus 111 ~a~~~ 115 (119)
+|.+.
T Consensus 221 lg~~~ 225 (262)
T COG1729 221 LGVSL 225 (262)
T ss_pred HHHHH
Confidence 55543
No 165
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=5e-05 Score=54.68 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=67.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHhcCHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++++..+.++.+.+|+..++-..+|.++...| +|++|++.++.+++. +|+. +.+.-.+..||..+|+.++.+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g--~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKG--DYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc--chHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 456677788888888888888888888888877 888888888888888 7654 345666778888888888888
Q ss_pred HHHHHHHhhCCC
Q 033440 92 TDAEEALKLCPT 103 (119)
Q Consensus 92 ~~~~~al~l~p~ 103 (119)
.-++++.+..++
T Consensus 270 ~fL~~~~~~~~g 281 (389)
T COG2956 270 NFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHccCC
Confidence 888888877654
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=9.2e-05 Score=50.03 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=69.3
Q ss_pred hhhHHhHHHHHHhcH---HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----
Q 033440 14 ESEKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---- 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---- 86 (119)
.+++..++.+....| --..+...+|..+++.| +|..|+..+++.+..-|. +|..+.+++.+|.+++.+.+
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHHHhCccchh
Confidence 356677777776654 36778889999999999 999999999999999555 45566789999999877643
Q ss_pred -------HHHHHHHHHHHHhhCCCCHH
Q 033440 87 -------YRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 87 -------~~~A~~~~~~al~l~p~~~~ 106 (119)
..+|+..++..++.-|++..
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred cccChHHHHHHHHHHHHHHHHCcCchH
Confidence 45899999999999998753
No 167
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=2.2e-05 Score=52.04 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----------NYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----------~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
-|+.|.+.++..... +|.++..+++-|.+++.+. -+++|++=++++|.++|+...+++.+|.+|.
T Consensus 6 ~FE~ark~aea~y~~----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 6 FFEHARKKAEAAYAK----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 578899999999999 9999999999999988863 3678899999999999999999999999875
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=5.2e-05 Score=54.09 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=72.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH-HHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY-RRAF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~A~ 91 (119)
..++.-.++.+....+..+..+..++.+++..| +|++|...+.+++.. +|.++.++.|+..|...+|+. +.+-
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~--~~~eAe~~L~~al~~----~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG--HYEEAEELLEEALEK----DPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 345666777776666778889999999999999 999999999999999 999999999999999999998 5566
Q ss_pred HHHHHHHhhCCCCHHH
Q 033440 92 TDAEEALKLCPTNVKV 107 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a 107 (119)
+...++...+|+++..
T Consensus 257 ~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHhCCCChHH
Confidence 7788888899988754
No 169
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.00 E-value=6.9e-05 Score=57.37 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
...++-++..+-..| ++++|+.+.+++|+. .|..+.+|+..|.++-+.|++.+|....+.+..+|+.+.
T Consensus 194 lw~~~~lAqhyd~~g--~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLG--DYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 456678899999999 999999999999999 999999999999999999999999999999999998654
No 170
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0001 Score=51.45 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
....+.+...++...| +|-++++..+..+.. +|.+..+|+.||.++....+..+|..++.++|+++|.-..+-
T Consensus 229 ~tpLllNy~QC~L~~~--e~yevleh~seiL~~----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKE--EYYEVLEHCSEILRH----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hhHHHHhHHHHHhhHH--HHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 3445667788899988 999999999999999 999999999999999999999999999999999999755443
No 171
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.99 E-value=3.6e-05 Score=58.65 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=75.3
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...|........+|..|+.+| +|+.|+..+.+++++... .+|.-.....+.|..|..+++|.+|+..|.+|+.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g--~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQG--RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457888888999999999998 999999999999987322 25666666677999999999999999999999986
Q ss_pred --------CCCCHHHHHHhhccCcC
Q 033440 101 --------CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 101 --------~p~~~~a~~~~a~~~~~ 117 (119)
+|....++.++|.+|..
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 35556788888887754
No 172
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00011 Score=53.05 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=77.0
Q ss_pred hhhHHhHHHHHHhc-----HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440 14 ESEKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 14 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
+++++..+++.++. -..+.-+-+++..+.... +++.|...+.+|+.. +|...-+-..+|.+....|+|+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchH
Confidence 34555555554443 446677888999998877 999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCH-HHHHHhhccC
Q 033440 89 RAFTDAEEALKLCPTNV-KVVILCSGSH 115 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~-~a~~~~a~~~ 115 (119)
.|++.++.+++.||++. .+.-.+..||
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999874 4444444444
No 173
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.97 E-value=4.4e-05 Score=58.95 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=84.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++-..+......++...-.|...|..+-... +|.+|+.+|+.|+.+ +|+|..++..++..+..+++++-....
T Consensus 58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHhhhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34445566666778888888999998887766 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
-.+.+.+.|.+...|+..+.++
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999998888877654
No 174
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.97 E-value=1.6e-06 Score=62.43 Aligned_cols=84 Identities=23% Similarity=0.200 Sum_probs=78.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+++.+..+++++|..+..+..++.++.+.+ .+..|++.+..++++ +|+...-|--++.+...+|+|++|.+
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~--kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK--KPNAAIRDCDFAIEI----NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc--CCchhhhhhhhhhcc----CcccccccchhhHHHHHhhchHHHHH
Confidence 556778888889999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 033440 93 DAEEALKLCP 102 (119)
Q Consensus 93 ~~~~al~l~p 102 (119)
+++.+++++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 9999999874
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=2.3e-05 Score=59.60 Aligned_cols=85 Identities=26% Similarity=0.251 Sum_probs=77.3
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---GNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p 102 (119)
.-|..++.+...|+-.|-.+ .+..|+..|.+++.. .|....++.|++.++++. |+--.|+.+|..+++++|
T Consensus 369 eL~e~ie~~~~egnd~ly~~--~~~~~i~~~s~a~q~----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYES--IVSGAISHYSRAIQY----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred hchHHHHHHHhhccchhhhH--HHHHHHHHHHHHhhh----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 34778899999999999988 999999999999999 999999999999999985 467789999999999999
Q ss_pred CCHHHHHHhhccCc
Q 033440 103 TNVKVVILCSGSHP 116 (119)
Q Consensus 103 ~~~~a~~~~a~~~~ 116 (119)
...++||+++.++.
T Consensus 443 s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 443 SIQKAHFRLARALN 456 (758)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 176
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=0.00015 Score=50.80 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+.+++=+|..++.+| +|+.|...|..++.--|. .|.-|+.++.+|.|+..+|+-++|-..++++++--|+...+..
T Consensus 177 ~~nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 177 TPNAYYWLGESLYAQG--DYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred cchhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4566777999999999 999999999999987555 6778899999999999999999999999999999999887766
Q ss_pred Hhh
Q 033440 110 LCS 112 (119)
Q Consensus 110 ~~a 112 (119)
.+.
T Consensus 254 Ak~ 256 (262)
T COG1729 254 AKV 256 (262)
T ss_pred HHH
Confidence 543
No 177
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.93 E-value=5.6e-05 Score=60.94 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+....... +|++|++.-.++++. +|+|..+++-+|.++..++. .++|-++|..+.+++|++.-||-.++..|.
T Consensus 9 Ak~al~nk--~YeealEqskkvLk~----dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye 82 (1238)
T KOG1127|consen 9 AKDALRNK--EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE 82 (1238)
T ss_pred HHHHHhhc--cHHHHHHHHHHHHhc----CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 34445554 899999999999999 99999999999999999998 999999999999999999999988887663
No 178
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.87 E-value=4.2e-05 Score=34.91 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.++.++|.++..+|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888888775
No 179
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.86 E-value=4.7e-05 Score=36.00 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677777777777777777777777777753
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=5.3e-05 Score=61.06 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=46.7
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.+..++.+...+|++.+.|..+|.+|-..| .|..|++.|+++..+ .|.+.-..+..+....-+|.|.+|+..+.
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~L----rP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESG--RYSHALKVFTKASLL----RPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhc----CcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444455555555666666666666666555 566666666666665 55555555555555555666666666555
Q ss_pred HHHhhCC
Q 033440 96 EALKLCP 102 (119)
Q Consensus 96 ~al~l~p 102 (119)
+.+....
T Consensus 655 ~ii~~~s 661 (1238)
T KOG1127|consen 655 LIIYAFS 661 (1238)
T ss_pred HHHHHHH
Confidence 5555433
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.85 E-value=0.00072 Score=42.98 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=58.0
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
........+..++..+...| ++++|+..+.+++.. +|.+-.++..+-.++..+|++.+|+..|++..+
T Consensus 57 l~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 57 LRELYLDALERLAEALLEAG--DYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556777888888999988 999999999999999 999999999999999999999999999988643
No 182
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.79 E-value=1.4e-05 Score=45.62 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----CC---CHHHHHHhhccCc
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC----PT---NVKVVILCSGSHP 116 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p~---~~~a~~~~a~~~~ 116 (119)
|+-+.++.++|.+|..+|+|++|+..+++++++. ++ -..+++++|.++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999762 22 3567788887764
No 183
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.77 E-value=0.0002 Score=51.57 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+......+....+.| +.++|..+|+.|+.+ .|.++.++...|.....-++.-+|-.+|-++|.++|.|.+++.
T Consensus 115 EA~~Al~~A~~~~~~G--k~ekA~~lfeHAlal----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDG--KLEKAMTLFEHALAL----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHhc----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 3444455566667778 899999999999999 9999999999999998889999999999999999999999999
Q ss_pred Hhhcc
Q 033440 110 LCSGS 114 (119)
Q Consensus 110 ~~a~~ 114 (119)
++++-
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 88763
No 184
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.00036 Score=56.44 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=67.2
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
++.+-......+.+-.+++.+|.+|-+.| ++++|...|+++|++ +|.++.+..++|..|... +.++|+..+.+
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g--~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLN--ENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 33444444445666689999999999999 999999999999999 999999999999999999 99999999999
Q ss_pred HHhh
Q 033440 97 ALKL 100 (119)
Q Consensus 97 al~l 100 (119)
|+..
T Consensus 175 AV~~ 178 (906)
T PRK14720 175 AIYR 178 (906)
T ss_pred HHHH
Confidence 9875
No 185
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0003 Score=52.40 Aligned_cols=90 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
....++.+..+|.+..++.-+|+.+.+.+ ++++|+=.|+.|+.+ .|-+...|..+-.||+-.|++.||....+.
T Consensus 320 L~~~eK~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 320 LNFVEKCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 33445555667777788888888888877 788888888888888 777777888888888888888888888888
Q ss_pred HHhhCCCCHHHHHHhh
Q 033440 97 ALKLCPTNVKVVILCS 112 (119)
Q Consensus 97 al~l~p~~~~a~~~~a 112 (119)
+++.-|.+.+++-..|
T Consensus 394 ~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHhhcchhhhhhhc
Confidence 8777777777766664
No 186
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.75 E-value=0.00025 Score=55.35 Aligned_cols=89 Identities=13% Similarity=-0.011 Sum_probs=45.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++..++..|+....|..+|.++-+++ +.+.|-+.|...+.. +|..+.++.-++..-.+.|+.-.|...+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~--~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQME--NIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHH--HHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 3444444444555555555555555555544 555555555555555 4444445555555555555555555555
Q ss_pred HHHHhhCCCCHHHHH
Q 033440 95 EEALKLCPTNVKVVI 109 (119)
Q Consensus 95 ~~al~l~p~~~~a~~ 109 (119)
.++.--+|.+...|+
T Consensus 743 drarlkNPk~~~lwl 757 (913)
T KOG0495|consen 743 DRARLKNPKNALLWL 757 (913)
T ss_pred HHHHhcCCCcchhHH
Confidence 555555555544443
No 187
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0014 Score=46.25 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=60.3
Q ss_pred HHHHHHHHHHH--HHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 31 AIELKEKGNEY--VKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 31 ~~~~~~~g~~~--~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
-..+.+++..+ +-.|+...+.|.-+|+..-+. .|..+.+....+.|++.+|+|++|....+.+|.-++.++.++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 33444444443 444555788888889887776 677888889999999999999999999999999999998887
Q ss_pred HHh
Q 033440 109 ILC 111 (119)
Q Consensus 109 ~~~ 111 (119)
-++
T Consensus 245 ~Nl 247 (299)
T KOG3081|consen 245 ANL 247 (299)
T ss_pred HHH
Confidence 765
No 188
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.71 E-value=9.5e-05 Score=35.31 Aligned_cols=33 Identities=21% Similarity=0.496 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE 69 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~ 69 (119)
++.+..+|.++...| ++++|+..|++++++ +|+
T Consensus 1 a~~~~~lg~~y~~~~--~~~~A~~~~~~a~~~----~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLG--DYEEALEYFEKALEL----NPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTT--SHHHHHHHHHHHHHH----HTT
T ss_pred CHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC
Confidence 367899999999999 999999999999999 664
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.00036 Score=49.38 Aligned_cols=85 Identities=25% Similarity=0.288 Sum_probs=62.2
Q ss_pred hhHHhHHHHHHh------cHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440 15 SEKADLDAIAAL------KESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 15 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
.++..+.++..+ ...-+..+..+|..+... | +++.|+..|.+|+++.... ...-..++.+.|.++.++|
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 455556655544 233577888999999998 8 9999999999999873221 1223467788999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 033440 86 NYRRAFTDAEEALKLC 101 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~ 101 (119)
+|++|+..|.++....
T Consensus 170 ~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp -HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.70 E-value=0.00031 Score=53.24 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=76.8
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
..+...+.++...+..|+.+--+...|..+...| +.++|++.|++++.......+-....++.++.|+..+.+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g--~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG--NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3445667788888889999999999999999998 99999999999986422223345578899999999999999999
Q ss_pred HHHHHHHhhCCCCHHHH
Q 033440 92 TDAEEALKLCPTNVKVV 108 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~ 108 (119)
..+.+.++.+.. .++.
T Consensus 326 ~~f~~L~~~s~W-Ska~ 341 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAF 341 (468)
T ss_pred HHHHHHHhcccc-HHHH
Confidence 999999997754 3443
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.69 E-value=3.1e-05 Score=37.56 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=29.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHH
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAI 53 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~ 53 (119)
++++++++|+++.+|..+|..+...| ++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g--~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG--DYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc--CHHhhc
Confidence 56788999999999999999999999 999986
No 192
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.68 E-value=0.00054 Score=53.58 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=84.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+.+...+.++....|+ .+.|+.-++...-.+ +.++|+++++++|.. .|....+|..+|+++..+++.+.|..
T Consensus 634 ~eraR~llakar~~sgT-eRv~mKs~~~er~ld--~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 634 LERARDLLAKARSISGT-ERVWMKSANLERYLD--NVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHHHHHHHHhccCCc-chhhHHHhHHHHHhh--hHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566777777776665 788888888888878 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhcc
Q 033440 93 DAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.|...++..|+.+..|..++.+
T Consensus 707 aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred HHHhccccCCCCchHHHHHHHH
Confidence 9999999999999999887754
No 193
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.67 E-value=0.00012 Score=35.82 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 74 YANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
+.++|.+|..+|+|++|+..|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555553
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.62 E-value=0.00016 Score=35.39 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
++..+|+.+.+.| +|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g--~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQG--DYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 4778999999999 999999999997766
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00014 Score=51.28 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
......+.+..+.-.. +|..|...|++.++. +|.++.+.+|.|.|++-+|+..+|+.....++...|..
T Consensus 251 ~~~V~~n~a~i~lg~n--n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQN--NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheeccc--chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445556666666655 999999999999998 99999999999999999999999999999999999963
No 196
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00011 Score=52.79 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+....+.|...++.| +|++|+..|+.|++. ..-++.+-++++.|+++.|+|..|+...++.++-
T Consensus 142 n~Ad~~in~gCllykeg--qyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEG--QYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred Cccchhccchheeeccc--cHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 46778889999999999 999999999999999 8889999999999999999999999998887653
No 197
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00047 Score=49.92 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+..|.+++.+.+-.| +|-.|+....+++.+ +|.+..+++.-|.|++.++++.+|+.-|...+.++...-.
T Consensus 118 navLY~NRAAa~~~l~--NyRs~l~Dcs~al~~----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLG--NYRSALNDCSAALKL----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHhhHHHHHHHHH--HHHHHHHHHHHHHhc----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4556778888888888 999999999999999 9999999999999999999999999999999888755433
No 198
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.55 E-value=0.00019 Score=49.61 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=53.9
Q ss_pred HHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+.+ |.+.|.+.|.+++++ .|.+...++..|....+.|+++.|...|+++++++|.+
T Consensus 5 ~~~~~--D~~aaaely~qal~l----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESG--DAEAAAELYNQALEL----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccC--ChHHHHHHHHHHhhc----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45566 999999999999999 99999999999999999999999999999999999965
No 199
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.48 E-value=0.0013 Score=48.32 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=68.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.-++.++.-.+..|+++..+..+|..+++++ .|.+|-..++.++.. .| +..-+..+|.++-.+|+..+|-...
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~--~w~kA~~~leaAl~~----~~-s~~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNK--LWGKASEALEAALKL----RP-SASDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--HHHHHHHHHHHHHhc----CC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence 4556777778889999999999999999988 999999999999998 55 5555788999999999999999999
Q ss_pred HHHHhh
Q 033440 95 EEALKL 100 (119)
Q Consensus 95 ~~al~l 100 (119)
++++.+
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 998853
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0032 Score=39.94 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-----Cc--c-----------hHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-----DS--E-----------NSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----~~--~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...|......| +.+.++..+.+++.+-.+. .+ + ...+...++..+...|++++|+..++
T Consensus 9 ~~~~a~~~~~~~--~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 9 LVREARAAARAG--DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344466666777 8999999999999873221 11 1 11455666777888999999999999
Q ss_pred HHHhhCCCCHHHHHHhhccCc
Q 033440 96 EALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++.++|.+..+|..+-.+|.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999888766653
No 201
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.00012 Score=55.45 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHh-hc--------cC-----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAIN-QN--------VL-----SDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~--------~~-----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
...|.++|.++++.| .|..+..+|.+|+. .| |. .....-.+.||+|..|+..|++..|.+.+.+
T Consensus 283 cif~NNlGcIh~~~~--~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLG--CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred heeecCcceEeeehh--hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 445789999999999 99999999999995 21 00 1223457899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHhhccCc
Q 033440 97 ALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 97 al~l~p~~~~a~~~~a~~~~ 116 (119)
++..--.+|..|+++|.|.+
T Consensus 361 av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999998764
No 202
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.38 E-value=0.00068 Score=31.81 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE 69 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~ 69 (119)
++++.+|.++.+.| ++++|+..|++.+.. .|+
T Consensus 1 ~a~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLG--DYDEAIEYFQRLIKR----YPD 32 (33)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHH----STT
T ss_pred CHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CcC
Confidence 36788999999998 999999999999999 775
No 203
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=0.0078 Score=38.42 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 31 AIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
....+++++++.+.. +.|-.+.+.+++..+.. . +| ..-...+.++..+.++|+|+.++.+++..|+.+|+|.++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 556677777776543 12567788888888862 1 33 4456777899999999999999999999999999999886
Q ss_pred HHh
Q 033440 109 ILC 111 (119)
Q Consensus 109 ~~~ 111 (119)
-.+
T Consensus 109 ~Lk 111 (149)
T KOG3364|consen 109 ELK 111 (149)
T ss_pred HHH
Confidence 544
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0052 Score=45.34 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
..++..++.+. .|++|++.|.+.+.. +|+...+-.++|.||.+++-|+-+-+...--|+.-|++.-+...++..
T Consensus 155 LSLAsvhYmR~--HYQeAIdvYkrvL~d----n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 155 LSLASVHYMRM--HYQEAIDVYKRVLQD----NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred HhHHHHHHHHH--HHHHHHHHHHHHHhc----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34455555545 799999999999999 999999999999999999999999999888899999998888777655
Q ss_pred CcC
Q 033440 115 HPN 117 (119)
Q Consensus 115 ~~~ 117 (119)
++.
T Consensus 229 ~fR 231 (557)
T KOG3785|consen 229 LFR 231 (557)
T ss_pred Hhh
Confidence 443
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.29 E-value=0.0088 Score=38.21 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
........+..+...+ +++.++..+.+++.. .+. ....+..++.++...+.+.+|+..+.+++...|.....+
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (291)
T COG0457 166 LAEALLALGALLEALG--RYEEALELLEKALKL----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239 (291)
T ss_pred hHHHHHHhhhHHHHhc--CHHHHHHHHHHHHhh----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence 4445555555555655 677777777777766 555 466666677777777777777777777777766644444
Q ss_pred HHhh
Q 033440 109 ILCS 112 (119)
Q Consensus 109 ~~~a 112 (119)
...+
T Consensus 240 ~~~~ 243 (291)
T COG0457 240 YNLA 243 (291)
T ss_pred hhHH
Confidence 4443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.27 E-value=0.0058 Score=41.36 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=66.0
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+-|+. .--..+|+.+-..| ++.+|...|.+++.=+ ...++.....++.+++.++++..|...++++.+.+|..
T Consensus 84 ~~ApTv-qnr~rLa~al~elG--r~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 84 AIAPTV-QNRYRLANALAELG--RYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred hhchhH-HHHHHHHHHHHHhh--hhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 344442 33457899999999 9999999999998631 56788889999999999999999999999999998853
Q ss_pred --HHHHHHhhccC
Q 033440 105 --VKVVILCSGSH 115 (119)
Q Consensus 105 --~~a~~~~a~~~ 115 (119)
+..++..|+.+
T Consensus 158 r~pd~~Ll~aR~l 170 (251)
T COG4700 158 RSPDGHLLFARTL 170 (251)
T ss_pred CCCCchHHHHHHH
Confidence 44555444443
No 207
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.24 E-value=0.0029 Score=37.57 Aligned_cols=59 Identities=27% Similarity=0.428 Sum_probs=46.4
Q ss_pred HHHhChhcHHHHHHHHHHHHhhccCCCc-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 41 YVKKGKKHYSDAIDCYTRAINQNVLSDS-----ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
..+.| ||.+|++.+.+.......... ....+..++|.++...|++++|+..+++++++-
T Consensus 8 ~~~~~--dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSG--DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcC--CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35566 999999998888876333222 234677889999999999999999999999874
No 208
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.23 E-value=0.0077 Score=35.65 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=50.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch--HHHHHHHHHHHHHhcCHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
..+..+++....+|++..+.+.++..++..| ++++|++.+-..+.. +++. -.+.-.+-.++-.+|.-+.-+.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--~~e~Al~~Ll~~v~~----dr~~~~~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAG--DYEEALDQLLELVRR----DRDYEDDAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---HHHHHHHHHHHHCC-----TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CccccccHHHHHHHHHHHHcCCCChHHH
Confidence 3566778888889999999999999999988 999999998888887 4432 3333444455555666444444
Q ss_pred HHHH
Q 033440 93 DAEE 96 (119)
Q Consensus 93 ~~~~ 96 (119)
.+++
T Consensus 80 ~~RR 83 (90)
T PF14561_consen 80 EYRR 83 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.0034 Score=50.39 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=75.6
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.++....+++.+..|+..-+..-.|-.+++.| ..++|..+++..-.. .+++-..+..+-.||..+|++++|+..
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g--k~~ea~~~Le~~~~~----~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLG--KGDEALKLLEALYGL----KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc--CchhHHHHHhhhccC----CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35667778888888888888888899999999 889999777665555 666777788899999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhc
Q 033440 94 AEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~ 113 (119)
|.+++..+|. .+..+.+-.
T Consensus 100 Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFM 118 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHH
Confidence 9999999998 555444433
No 210
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.21 E-value=0.0079 Score=34.70 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+....+.|..+++.. +.++|+..++++++..+. .|+...++-.+..+|...|+|.+++...-+=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~--~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQN--ETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666788999999887 999999999999998433 3344455555666888999999999977665544
No 211
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00076 Score=49.56 Aligned_cols=60 Identities=30% Similarity=0.384 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
+...| .|.++|+.| ||++|+..|+-+... +.-+..+..++|.|++-+|.|.+|.+...++
T Consensus 58 ~~~lW--ia~C~fhLg--dY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 58 SLQLW--IAHCYFHLG--DYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHH--HHHHHHhhc--cHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 34444 688999999 999999999999887 7778889999999999999999999877665
No 212
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0041 Score=45.49 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=75.6
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+....++++.-.|++..++..--..+|-+| +...-...+++.+.. ++++. .-++-..+.++...|-|.+|..
T Consensus 122 a~~~wdklL~d~PtDlla~kfsh~a~fy~G--~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 122 AAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--NQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred HHHHHHHHHHhCchhhhhhhhhhhHHHhcc--chhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 445667888888999999888888888888 777777777665543 34444 5556667889999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
..++++++||.+..+...++.++
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHH
Confidence 99999999999999988887765
No 213
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0039 Score=48.81 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
....+++.+..+|+.. +|..+++.|...+..++.. +..-+....+++.||+++.+.+.|++++.+|=+.+|.++-.
T Consensus 353 iH~iLWn~A~~~F~~~--~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKME--KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 4556888899999998 9999999999999875553 23456788999999999999999999999999999998765
Q ss_pred HHHh
Q 033440 108 VILC 111 (119)
Q Consensus 108 ~~~~ 111 (119)
.+..
T Consensus 431 q~~~ 434 (872)
T KOG4814|consen 431 QLLM 434 (872)
T ss_pred HHHH
Confidence 5544
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.18 E-value=0.0037 Score=47.51 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=71.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----------C---------cc--hH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----------D---------SE--NS 71 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----------~---------~~--~~ 71 (119)
+.+.++...+++.++|+.+.++.-++..... ...+|.++|.++++..+.. . +. -.
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEeA~----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEEAS----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccccc----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 3456677788889999999999888776553 3567777777777542110 0 01 13
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC--CHHHHHHhhccCc
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT--NVKVVILCSGSHP 116 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~ 116 (119)
.+-..+|.|.-++|+.+||+..++..++..|. +...++++..+++
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 45567899999999999999999999998874 4557777766653
No 215
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00067 Score=53.52 Aligned_cols=89 Identities=29% Similarity=0.335 Sum_probs=78.4
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--LGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l~p~ 103 (119)
..-..+......|+.+|+.+ ++..+.-.|..++.+.|..++.....+.+.+.|++. +|+|.+++..|.-++...|.
T Consensus 48 v~l~ra~~~~~E~n~~~~K~--d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~ 125 (748)
T KOG4151|consen 48 VFLSRALELKEEGNKLFQKR--DYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR 125 (748)
T ss_pred HHHHHHHHHHhhhhHHhhhh--hhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence 34456777889999999988 999999999999999887778889999999998886 57899999999999999999
Q ss_pred CHHHHHHhhccCc
Q 033440 104 NVKVVILCSGSHP 116 (119)
Q Consensus 104 ~~~a~~~~a~~~~ 116 (119)
..++++.++.+|.
T Consensus 126 i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 126 ISKALLKRARKYE 138 (748)
T ss_pred HHHHHhhhhhHHH
Confidence 9999999888774
No 216
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.15 E-value=0.0027 Score=49.38 Aligned_cols=91 Identities=20% Similarity=0.134 Sum_probs=76.7
Q ss_pred hhHHhHHHHHHhcHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 15 SEKADLDAIAALKESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.+++.+..+....|.. -..+.++++...+.| -...|-..+.+++.+ ....|..++..|..++.+.+...|++.
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--~~~da~~~l~q~l~~----~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG--LHLDATKLLLQALAI----NSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHhh--hhccHHHHHHHHHhh----cccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4566677766666653 345788999999988 999999999999999 888889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHh
Q 033440 94 AEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
++.|++++|+++.....+
T Consensus 699 ~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHhcCCCChhhHHHH
Confidence 999999999987655443
No 217
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.11 E-value=0.013 Score=38.37 Aligned_cols=84 Identities=19% Similarity=0.107 Sum_probs=65.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++..-..++.+.-+.|..++.-.-.|..+..+| +|.+|+..++...+. .|..+.+-.-++.|+..+|++.=- .
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~--~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~~Wr-~ 98 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRG--DWDDALRLLRELEER----APGFPYAKALLALCLYALGDPSWR-R 98 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC--CHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCChHHH-H
Confidence 344556678888889999999999999999988 999999999998777 788887777788898888875432 2
Q ss_pred HHHHHHhhCCC
Q 033440 93 DAEEALKLCPT 103 (119)
Q Consensus 93 ~~~~al~l~p~ 103 (119)
+..++++.+++
T Consensus 99 ~A~evle~~~d 109 (160)
T PF09613_consen 99 YADEVLESGAD 109 (160)
T ss_pred HHHHHHhcCCC
Confidence 35667776653
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.00072 Score=50.54 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=71.0
Q ss_pred hHHhHHHHHHhc----HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc--CCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 16 EKADLDAIAALK----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 16 ~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.+..++++++.- ...+..|.++||+||-.+ ||++|+++-..-|.+.. ...-..+..--|+|..+-.+|+|++
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 344455554432 334566889999999998 99999998555443311 1123455667889999999999999
Q ss_pred HHHHHHHHHhhCC------CCHHHHHHhhccCcC
Q 033440 90 AFTDAEEALKLCP------TNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p------~~~~a~~~~a~~~~~ 117 (119)
|+..|.+-|.+.. .-..++|++|.+|-.
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha 147 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHA 147 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence 9999998766532 245789999988843
No 219
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.08 E-value=0.0013 Score=29.51 Aligned_cols=29 Identities=34% Similarity=0.683 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+..+|..++..+ +++.|+..+++++..
T Consensus 2 ~~~~~~a~~~~~~~--~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLG--DYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHh--hHHHHHHHHHHHHcc
Confidence 46788999999998 999999999999998
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.00049 Score=51.40 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.+++-++||.|+-.| ||++||..-..-+++..... ...--++.|+|.||..+|+++.|+++|.+.+.+
T Consensus 194 qGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 4556778899999999 99999998777776621111 123358999999999999999999999997654
No 221
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.04 E-value=0.0042 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+..+++.++. +|+++.+.+.+|.+++..|++++|+..+-.+++.++++
T Consensus 6 ~~~~al~~~~a~----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAA----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 346678889999 99999999999999999999999999999999998866
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.02 E-value=0.011 Score=37.71 Aligned_cols=71 Identities=28% Similarity=0.310 Sum_probs=41.3
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH-VNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p 102 (119)
..+.....+...|......+ ++..++..+..++.. .+.+.......+. ++...|++.+|+..+.+++..+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALG--KYEEALELLEKALAL----DPDPDLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred hccchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcC----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45555666666666666665 666666666666665 4443333333444 56666666666666666655554
No 223
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0082 Score=42.40 Aligned_cols=74 Identities=16% Similarity=0.283 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
...+=..+.+.+ +++.|+....+.+.+ +|+++.-..-+|.+|..+|.+.-|+++++.-++..|+.+.+-.-+.+
T Consensus 184 l~~lk~~~~~e~--~~~~al~~~~r~l~l----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLREL--QWELALRVAERLLDL----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhh--chHHHHHHHHHHHhh----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334455666666 899999999999999 99999999999999999999999999999999999998877665543
No 224
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.92 E-value=0.0033 Score=30.91 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888775
No 225
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.90 E-value=0.0088 Score=39.13 Aligned_cols=83 Identities=14% Similarity=-0.007 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
......+.+........+ +.+.+...+...-.+ .|..+.+-.--|..++..|+|.+|+..++.+..-.|..+.+
T Consensus 7 ~~iv~gLie~~~~al~~~--~~~D~e~lL~ALrvL----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~ 80 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLG--DPDDAEALLDALRVL----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA 80 (160)
T ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH
Confidence 345677888888899988 999999999998889 99999999999999999999999999999999999988766
Q ss_pred HHHhhccCc
Q 033440 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
--.++.|+.
T Consensus 81 kALlA~CL~ 89 (160)
T PF09613_consen 81 KALLALCLY 89 (160)
T ss_pred HHHHHHHHH
Confidence 555555553
No 226
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.89 E-value=0.036 Score=39.26 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=65.1
Q ss_pred ChhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHH
Q 033440 13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLL 83 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~ 83 (119)
.+++++.+.++.... ......+...|..+.+.| +|++|+..|++.+...... ...-...+...+.|++.
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 456666666665542 223555678899999998 9999999999998752211 11222466788999999
Q ss_pred hcCHHHHHHHHHHHHhhCCCC
Q 033440 84 LGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~ 104 (119)
.|++..|...+++....+|.+
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTS
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999854
No 227
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.87 E-value=0.0055 Score=45.94 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHhhccCC----C-----cchH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLS----D-----SENS-----VLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~-----~~~~-----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
-|..+++++ +|..|...|.-+|++|.+. . +++. -+--.+..||+++++++-|+.+.-+.+.++|
T Consensus 182 das~~yrqk--~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 182 DASSCYRQK--KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHhhH--HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 455566666 7888888888888876542 1 1221 2445678999999999999999999999999
Q ss_pred CCHHHHHHhhccC
Q 033440 103 TNVKVVILCSGSH 115 (119)
Q Consensus 103 ~~~~a~~~~a~~~ 115 (119)
.+...|++.|-|+
T Consensus 260 ~~frnHLrqAavf 272 (569)
T PF15015_consen 260 SYFRNHLRQAAVF 272 (569)
T ss_pred chhhHHHHHHHHH
Confidence 9999998887654
No 228
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0045 Score=47.85 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=39.0
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
++.+-++++.+ ..++|+..++ .. ++.+..+..-+|++++++|+|++|+..|+..++.+.+.....
T Consensus 83 fEKAYc~Yrln--k~Dealk~~~---~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 83 FEKAYCEYRLN--KLDEALKTLK---GL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HHHHHHHHHcc--cHHHHHHHHh---cc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 35555555555 5555555554 22 444555556677777777777777777777776665544443
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0069 Score=43.02 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHhHHHHHHhc-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 17 KADLDAIAALK-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++.+..+++.+ |.++.....+|...++-| |-+.|..+++..-...-. .-..+-.++.|.+.+|...++|.+|...
T Consensus 197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 34555565666 667777888999999999 988888877743321000 0245667888899999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.+.++.||.++.+-.++|.|+
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HhhccccCCCchhhhchHHHHH
Confidence 9999999999998888887765
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0045 Score=44.71 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=47.6
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+..-...+|..-..+.-+|-+|+... +|..|..+|++.-.. .|......+.-+..+++.+.|.+|+.......
T Consensus 32 ~l~s~~Er~p~~rAgLSlLgyCYY~~Q--~f~~AA~CYeQL~ql----~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 32 LLGSELERSPRSRAGLSLLGYCYYRLQ--EFALAAECYEQLGQL----HPELEQYRLYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 333344455666666667777777766 677777777776666 66666666666667777777777766555443
No 231
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.023 Score=44.09 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=67.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
-++..+...+++...|++..+++-.-.++.+.+ .|+.|+.....-... . .....++..+.|.++++..++|+.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~----~-~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLD--KYEDALKLIKKNGAL----L-VINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchh----h-hcchhhHHHHHHHHHcccHHHHHH
Confidence 345666777788888999999999999999998 999999554433322 1 222333789999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+. .+++........+|+++
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvl 120 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVL 120 (652)
T ss_pred HHh---cccccchHHHHHHHHHH
Confidence 988 45555555554444443
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.71 E-value=0.028 Score=37.34 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.+.-+++..+|..|.+.| |.+.|++.|.++.+.+.. ......++.++-.+.+..++|..+.....++-.+
T Consensus 32 kesir~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIG--DLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556788999999999999 999999999999987433 2345567777778888899999999998888664
No 233
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.69 E-value=0.014 Score=35.86 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=56.5
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhhCC
Q 033440 37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLG-----------NYRRAFTDAEEALKLCP 102 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p 102 (119)
++..++.+| |+-+|+++.+..+.. .+++. .++..-|.++..+. -..-+++.++++..+.|
T Consensus 2 ~A~~~~~rG--nhiKAL~iied~i~~----h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARG--NHIKALEIIEDLISR----HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHcc--CHHHHHHHHHHHHHH----ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 466788988 999999999999987 44433 67777788776643 24568899999999999
Q ss_pred CCHHHHHHhhcc
Q 033440 103 TNVKVVILCSGS 114 (119)
Q Consensus 103 ~~~~a~~~~a~~ 114 (119)
+....+|.+|.-
T Consensus 76 ~~A~~L~~la~~ 87 (111)
T PF04781_consen 76 DSAHSLFELASQ 87 (111)
T ss_pred hHHHHHHHHHHH
Confidence 998888888753
No 234
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.67 E-value=0.0063 Score=29.87 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN 63 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
+.++.++|..+...| ++++|+.++.+++++.
T Consensus 2 a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQG--RYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hcchhhHHHHHHHHHH
Confidence 467889999999999 9999999999999873
No 235
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.017 Score=40.94 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhCCCCHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA-EEALKLCPTNVK 106 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~-~~al~l~p~~~~ 106 (119)
+..+..+..+++++...| +|++|......++.. ++.++..+.|+-.|-..+|...++...+ .+....+|.++.
T Consensus 204 ~~T~~llnG~Av~~l~~~--~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLG--RYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CCChHHHccHHHHHHHhc--CHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 345677888999999999 999999999999999 9999999999999999999988887754 455556777653
No 236
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.038 Score=42.26 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=71.5
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFTDAE 95 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~ 95 (119)
...+..+....+.+...|..-....-+.+ .+.+--..|.+++.. +|+++.++...|.-.+..+. .+.|...+.
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~--~~~~v~ki~~~~l~~----Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKK--TYGEVKKIFAAMLAK----HPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 34455666666667777776666555554 788989999999999 99999999999998888776 999999999
Q ss_pred HHHhhCCCCHHHHHH
Q 033440 96 EALKLCPTNVKVVIL 110 (119)
Q Consensus 96 ~al~l~p~~~~a~~~ 110 (119)
++|+.+|+++..|..
T Consensus 165 rgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKE 179 (568)
T ss_pred HHhhcCCCChHHHHH
Confidence 999999999887643
No 237
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.55 E-value=0.0069 Score=30.07 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.+|..+|.+-+..++|.+|+.++.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788899999999999999999998864
No 238
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.45 E-value=0.077 Score=33.35 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHHHHH--HHHHHHhChhcHHHHHHHHHHHHhhccCCCc--------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEK--GNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--------ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~--g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+.+|..+ |....+.| -|++|...++++++...+..| -++..|..++-++..+|+|++++....++|..
T Consensus 7 a~aY~aLs~ae~ql~~g--~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDG--AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3444433 44455666 999999999999987333222 25567888888999999999999999998863
No 239
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.40 E-value=0.059 Score=34.92 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=54.4
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.-..++.+.-+.|+.++.-.-.|..+...| +|.+|+..++...+. .+..+..---.+.|+.-+|+..=- .+..
T Consensus 29 ~e~lLdALrvLrP~~~e~d~~dg~l~i~rg--~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp~Wr-~~A~ 101 (153)
T TIGR02561 29 AQAMLDALRVLRPNLKELDMFDGWLLIARG--NYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDAEWH-VHAD 101 (153)
T ss_pred HHHHHHHHHHhCCCccccchhHHHHHHHcC--CHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCChHHH-HHHH
Confidence 334566667778888888788888888877 888888888887776 556666666677788877775422 2244
Q ss_pred HHHhhCC
Q 033440 96 EALKLCP 102 (119)
Q Consensus 96 ~al~l~p 102 (119)
+++.-++
T Consensus 102 ~~le~~~ 108 (153)
T TIGR02561 102 EVLARDA 108 (153)
T ss_pred HHHHhCC
Confidence 4555443
No 240
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.24 E-value=0.063 Score=28.59 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.++.++..+++.| +|+.|..+.+.+|+. +|+|..+..-...
T Consensus 3 ~lY~lAig~ykl~--~Y~~A~~~~~~lL~~----eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLG--EYEKARRYCDALLEI----EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHH----TTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCcHHHHHHHHH
Confidence 4677889999999 999999999999999 9998876554433
No 241
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.17 E-value=0.02 Score=42.37 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.|++|.+++.+|..+++.+.|.+|-.+++.+++..|+ ...+..+|.++
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~ 371 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL 371 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence 8889999999999999999999999999999999874 33444444443
No 242
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.11 E-value=0.035 Score=27.13 Aligned_cols=32 Identities=19% Similarity=-0.060 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHhhCCCC
Q 033440 73 LYANRAHVNLLLGNYRRAFTD--AEEALKLCPTN 104 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~--~~~al~l~p~~ 104 (119)
.++..|.++...|++++|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 345566777777777777777 44666666543
No 243
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.05 E-value=0.097 Score=32.21 Aligned_cols=83 Identities=13% Similarity=0.244 Sum_probs=61.5
Q ss_pred hhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhCh---------hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGK---------KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
++++.++......+++. ..+..+|.++++... --.-.++++|.+++.+ .|..+..++.+|.-+-
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDSAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhHHHHHHHHHHHhh
Confidence 45555555555544433 667777888865442 0234688999999999 9999999999998877
Q ss_pred HhcCHHHHHHHHHHHHhhC
Q 033440 83 LLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~ 101 (119)
...-|++++.-++++|.+.
T Consensus 90 s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 90 SVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hHHHHHHHHHHHHHHhccc
Confidence 7788999999999998853
No 244
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.082 Score=39.48 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=82.6
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----H
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----Y 87 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----~ 87 (119)
..+.++..+..+...+|+.--+|..+-..+.+++-.+|..=+...+++++. +|.+..++..|=.+.-.... .
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~----D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ----DPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CcccccchHHHHHHHHHHhcccccc
Confidence 456777888889999999999999999999987754578889999999999 88888777777666554432 5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 88 RRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+-+..+.+++.-++.|..+|..+..++
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 7788899999999999999998887654
No 245
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.01 E-value=0.13 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC---CCc----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---SDS----ENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~~~----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++-.+..+...+...| +|++++.....+|...-+ -+. ....+.++++.++..+|+.++|+..++.+.+
T Consensus 54 DA~chA~Ls~A~~~Lg--ry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLG--RYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4455666777888888 999999888888854110 022 3456778999999999999999999999865
No 246
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.99 E-value=0.047 Score=38.74 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=60.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+...+.++.+..+.....|...|..-++.++ +.+.|...|+.++.. .|.+..++......+..+++.+.|...+
T Consensus 19 ~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-d~~~A~~Ife~glk~----f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 19 AARKVFKRARKDKRCTYHVYVAYALMEYYCNK-DPKRARKIFERGLKK----FPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 34455666654444456777777777666432 777799999999988 8888888888888888889999999999
Q ss_pred HHHHhhCCCC
Q 033440 95 EEALKLCPTN 104 (119)
Q Consensus 95 ~~al~l~p~~ 104 (119)
++++..-|..
T Consensus 94 er~i~~l~~~ 103 (280)
T PF05843_consen 94 ERAISSLPKE 103 (280)
T ss_dssp HHHCCTSSCH
T ss_pred HHHHHhcCch
Confidence 9988765543
No 247
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.98 E-value=0.34 Score=35.11 Aligned_cols=91 Identities=11% Similarity=-0.034 Sum_probs=70.8
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhC----------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
...+.+....+|.+..+|.++...--..- +.-.+.-+.+|++||+. +|++..++..+=.+..+...
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~----np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH----NPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC
Confidence 45567777889999999987765432221 01245667889999999 99999888888788888899
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 87 YRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++...-.++++..+|++...|...
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 9999999999999999998877543
No 248
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.068 Score=37.96 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=41.1
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHH-HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYS-DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++.++.+...+|++-..|..+-.+.-..| ++. .-++.....|.. +..+..++..|-.|....+.|++-+..+
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~--d~s~rELef~~~~l~~----DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLG--DPSFRELEFTKLMLDD----DAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhc--CcccchHHHHHHHHhc----cccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 333444444444444444444444444444 444 334444444444 4444455555555555555555555555
Q ss_pred HHHHhhCCCCHHHHH
Q 033440 95 EEALKLCPTNVKVVI 109 (119)
Q Consensus 95 ~~al~l~p~~~~a~~ 109 (119)
.+.|+.|-.|-.||.
T Consensus 171 ~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHHHhhhccchhh
Confidence 555555544444443
No 249
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.84 E-value=0.28 Score=33.65 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhChhc-------HHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 29 SAAIELKEKGNEYVKKGKKH-------YSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~-------~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+..+..+++.+-..| + ...|+..|.++++.... ..-+...+.+-+|....++|++++|+..+++++.
T Consensus 116 ~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 45667777777777666 5 45566666666665221 1224567888899999999999999999999998
Q ss_pred hCCCCH-HHHHHhh
Q 033440 100 LCPTNV-KVVILCS 112 (119)
Q Consensus 100 l~p~~~-~a~~~~a 112 (119)
..-.+. .....+|
T Consensus 194 ~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 194 SKKASKEPKLKDMA 207 (214)
T ss_pred CCCCCCcHHHHHHH
Confidence 654333 3444444
No 250
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.67 E-value=0.02 Score=41.63 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=65.9
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN-RAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+.++..|..-++-..+.+ .|.+--..|.+++.. +|.++++|.. .+.-+...++++-+...+.++++.+|++
T Consensus 102 kff~D~k~w~~y~~Y~~k~k--~y~~~~nI~~~~l~k----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKK--MYGEMKNIFAECLTK----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 35666777777777667765 888888999999999 9999999987 4556778899999999999999999999
Q ss_pred HHHHHH
Q 033440 105 VKVVIL 110 (119)
Q Consensus 105 ~~a~~~ 110 (119)
+..|+.
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 887753
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.12 Score=35.03 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=40.0
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
.++.+.++.| .+++|+..++...+ +...+...--+|.++...|+-.+|...|.+++..+++.+
T Consensus 131 RLArvq~q~~--k~D~AL~~L~t~~~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQK--KADAALKTLDTIKE-----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhh--hHHHHHHHHhcccc-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3444444444 45555444333221 233445566789999999999999999999999875543
No 252
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.61 E-value=0.055 Score=42.92 Aligned_cols=60 Identities=8% Similarity=-0.149 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.|..+...+...| +++.|...+++.+++ .|++...|..++.+|.+.|++++|.+.+++..
T Consensus 496 ~~~~Ll~a~~~~g--~~~~a~~~~~~l~~~----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 496 MWAALLTACRIHK--NLELGRLAAEKLYGM----GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHcC--CcHHHHHHHHHHhCC----CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444 455555555555444 45444445555555555555555555554443
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.59 E-value=0.22 Score=35.01 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=67.4
Q ss_pred hhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-------
Q 033440 15 SEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL------- 84 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l------- 84 (119)
+++..++++....|- .-.+...++-.+++.+ +|+.|+...++-+.+-|+ +|+-.-+++-+|.+++..
T Consensus 52 ~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i~~~~rD 128 (254)
T COG4105 52 EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--EYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQIDDVTRD 128 (254)
T ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccCCccccC
Confidence 344555555555433 4566778899999988 999999999999999666 566777888899998763
Q ss_pred -cCHHHHHHHHHHHHhhCCCCH
Q 033440 85 -GNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 85 -~~~~~A~~~~~~al~l~p~~~ 105 (119)
..-.+|+..+..++.-=|++.
T Consensus 129 q~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 129 QSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCc
Confidence 235678889999999888764
No 254
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.58 E-value=0.064 Score=34.79 Aligned_cols=82 Identities=15% Similarity=-0.089 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
......+.+........+ +++.+.......-.+ -|+.+.+-.--|..++..|+|.+|+..++.+.+-.+..+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~--d~~D~e~lLdALrvL----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~ 80 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSA--DPYDAQAMLDALRVL----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG 80 (153)
T ss_pred HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence 334556666666677778 999999999888888 89999999989999999999999999999999988877655
Q ss_pred HHHhhccC
Q 033440 108 VILCSGSH 115 (119)
Q Consensus 108 ~~~~a~~~ 115 (119)
--.++.|+
T Consensus 81 kAL~A~CL 88 (153)
T TIGR02561 81 KALLALCL 88 (153)
T ss_pred HHHHHHHH
Confidence 44444444
No 255
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.48 E-value=0.06 Score=36.58 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+.++....+|..|.+. |.++++..+.+++++....+.-++.++..++.++.++|+++.|-
T Consensus 139 ~t~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4577777888877753 79999999999999855544567899999999999999998873
No 256
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.48 E-value=0.052 Score=40.61 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhh-----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQ-----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+...+.-.| ||..|+...+- |++ ...+.+-....++..|.||+.+++|.+|+..+..+|-
T Consensus 127 gLlRvh~LLG--DY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLG--DYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhcc--CHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778 99999987543 333 1123455678899999999999999999999999765
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.32 Score=34.63 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=72.7
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH-HH
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR-RA 90 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~A 90 (119)
.++.++...+.++.++|.+-..|.-+-.++-..+. +..+-++..+..++- .|.|..++..|-.+...+|++. .-
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-dL~~El~~l~eI~e~----npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-DLNKELEYLDEIIED----NPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHhcCcccch
Confidence 45677777888888888888887777776655543 677778888888887 8888888888888888888877 77
Q ss_pred HHHHHHHHhhCCCCHHHHHHh
Q 033440 91 FTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~ 111 (119)
++.++.++..+..|..+|--+
T Consensus 133 Lef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred HHHHHHHHhccccchhhhHHH
Confidence 888888888887777776443
No 258
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.44 E-value=0.064 Score=37.36 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
|..+|.+|+.+ .|.+...|+.+|.+....|+.-+|+-.|-+++-..
T Consensus 1 A~~~Y~~A~~l----~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRL----LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHh----CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 34455555555 55555555555555555555555555555554433
No 259
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.39 Score=33.72 Aligned_cols=89 Identities=18% Similarity=0.104 Sum_probs=56.5
Q ss_pred hhhHHhHHHHHHhcHHHHHH------HHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAALKESAAIE------LKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l 84 (119)
.+++..++.++.+..+..+- +..+|..|-.. . ++++||.+|+++-+.-.. +...--..+...+..-..+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 34555666666655443332 33667777665 5 899999999999876111 0111223445555555678
Q ss_pred cCHHHHHHHHHHHHhhCCCC
Q 033440 85 GNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~ 104 (119)
++|.+||..|+++.+..-+|
T Consensus 168 eqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999988865544
No 260
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=95.40 E-value=0.12 Score=33.16 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
.+.....+...+..| +|.-|+.+.+.++.. +|++..+..-++.++..+|.-.
T Consensus 70 ~d~vl~~A~~~~~~g--d~~wA~~L~d~l~~a----dp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAG--DYQWAAELLDHLVFA----DPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHhc
Confidence 566778888899988 999999999999999 9999999999999988876433
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.39 E-value=0.18 Score=38.47 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc-hHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNY-------RRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~-------~~A~~~~~~al~l 100 (119)
....++++|..++-.+ +|++|...+.+.++. ..+ ...+.+..|.|+..+++. ++|...+.++-.+
T Consensus 304 ~~l~~~El~w~~~~~~--~w~~A~~~f~~L~~~----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 304 HHLCYFELAWCHMFQH--DWEEAAEYFLRLLKE----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHHHHc--hHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4566889999999998 999999999999988 554 455667788899999999 8888888887654
No 262
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.39 E-value=0.27 Score=41.27 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=4.2
Q ss_pred cHHHHHHHHHH
Q 033440 48 HYSDAIDCYTR 58 (119)
Q Consensus 48 ~~~~A~~~~~~ 58 (119)
++++|.+.|.+
T Consensus 594 ~ldeA~elf~~ 604 (1060)
T PLN03218 594 QVDRAKEVYQM 604 (1060)
T ss_pred CHHHHHHHHHH
Confidence 33333333333
No 263
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.31 E-value=0.16 Score=39.50 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=66.0
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.++..+.+....-|.....+-+.+..+++++ +++.-.|++....|+++ +|....+++.++.++..++++.+|+++
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl----n~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL----NPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----ChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445556666666777777888888887753 13667889999999999 999999999999999999999999996
Q ss_pred HHHHHhhCC
Q 033440 94 AEEALKLCP 102 (119)
Q Consensus 94 ~~~al~l~p 102 (119)
..-+.-..|
T Consensus 468 ~~alq~~~P 476 (758)
T KOG1310|consen 468 HWALQMSFP 476 (758)
T ss_pred HHHHhhcCc
Confidence 655555555
No 264
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.23 E-value=0.11 Score=41.13 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+.+...|..+...|.+.| ++++|+..|.+.... ...| +...|..+..++.++|++++|.+.+..+++..
T Consensus 287 ~~~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~--g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHG--YSEEALCLYYEMRDS--GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred CCChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 345667788888888877 888888888776543 1133 33445666666777777777777777666654
No 265
>PRK10941 hypothetical protein; Provisional
Probab=95.23 E-value=0.11 Score=36.92 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+.+....+.+..+.|+++..+..+|..+.+.| -+..|+..++.-|+. +|+++.+-.-+..
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~--c~~~A~~DL~~fl~~----~P~dp~a~~ik~q 257 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD--CEHVALSDLSYFVEQ----CPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh----CCCchhHHHHHHH
Confidence 346677788888999999999999999999999 999999999999999 7777776554433
No 266
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.19 E-value=0.22 Score=33.88 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=58.5
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hCCCCHHHHHHhhcc
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK-LCPTNVKVVILCSGS 114 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-l~p~~~~a~~~~a~~ 114 (119)
..+....+.= |++..++..++.++. .|.... .+.+|.....+|++.||...|.+++. +--+++..++.++++
T Consensus 61 ~~~~a~~q~l--dP~R~~Rea~~~~~~----ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 61 TLLMALQQKL--DPERHLREATEELAI----APTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHHhc--ChhHHHHHHHHHHhh----chhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 3455555555 888899888999998 665554 56799999999999999999999987 556778888888776
Q ss_pred Cc
Q 033440 115 HP 116 (119)
Q Consensus 115 ~~ 116 (119)
.+
T Consensus 134 qf 135 (251)
T COG4700 134 QF 135 (251)
T ss_pred HH
Confidence 54
No 267
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.14 E-value=0.28 Score=36.23 Aligned_cols=86 Identities=19% Similarity=0.080 Sum_probs=66.1
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-----C-----------------CCcchH---HHH
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV-----L-----------------SDSENS---VLY 74 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-----~-----------------~~~~~~---~~~ 74 (119)
+-.+...+|=+..++.+++.++.++| |++.|.+..++||=... . ..+.|- .+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~g--d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQG--DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 44455778889999999999999999 99999999999983311 0 122222 355
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCC-CHHH
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPT-NVKV 107 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a 107 (119)
+.....+.+.|-+..|++.|+-.+.+||. ++-+
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 55567778899999999999999999998 6543
No 268
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.12 E-value=0.043 Score=24.53 Aligned_cols=24 Identities=17% Similarity=-0.110 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
.+.+++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777766554
No 269
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.07 E-value=0.39 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...|..+...+.+.| ++++|...+.+.........|+ ...|..+-.+|.+.|++++|+..++++.+.
T Consensus 542 ~vTYnsLI~a~~k~G--~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 542 RVVFNALISACGQSG--AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 344555555555555 5555555555544310000222 223333444444444444444444444443
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.01 E-value=0.13 Score=39.16 Aligned_cols=72 Identities=7% Similarity=-0.034 Sum_probs=54.3
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.-+.-+|.+| +|.++.-+-....++ .| .+.++.-+|.|.+..++|.+|...+...- .+.+-...+..+|.++
T Consensus 467 aDAEyLysqg--ey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-~n~~~~dskvqKAl~l 538 (549)
T PF07079_consen 467 ADAEYLYSQG--EYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP-PNERMRDSKVQKALAL 538 (549)
T ss_pred HHHHHHHhcc--cHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC-CchhhHHHHHHHHHHH
Confidence 4455678888 999999998888888 88 88999999999999999999999776542 2323234444444443
No 271
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.98 E-value=0.059 Score=26.68 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.+..+|.+....+ +|++|+..|.+++++
T Consensus 2 dv~~~Lgeisle~e--~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENE--NFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 45677899999988 999999999999987
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.94 E-value=0.036 Score=40.34 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=63.3
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH----HHhcCH
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLLGNY 87 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l~~~ 87 (119)
..+++...++-+.++.|++++.+.+.|...-... +.-+|-.+|.+|+.+ +|.+..++.||+-.. .--.++
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~--~iv~ADq~Y~~ALti----sP~nseALvnR~RT~plV~~iD~r~ 204 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHN--EIVEADQCYVKALTI----SPGNSEALVNRARTTPLVSAIDRRM 204 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh--hhHhhhhhhheeeee----CCCchHHHhhhhccchHHHHHHHHH
Confidence 4567778888888999999999999999998876 999999999999999 999999999986532 112234
Q ss_pred HHHHHHHHHHHh
Q 033440 88 RRAFTDAEEALK 99 (119)
Q Consensus 88 ~~A~~~~~~al~ 99 (119)
-+.+.+-+..+.
T Consensus 205 l~svdskrd~~~ 216 (472)
T KOG3824|consen 205 LRSVDSKRDEFN 216 (472)
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
No 273
>PLN03077 Protein ECB2; Provisional
Probab=94.91 E-value=0.19 Score=40.84 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...+.-+...+.+.| ++++|.+.+++. .. .|+ +..|..+-.++..-|+.+.+....+++++++|++...|..
T Consensus 625 ~~~y~~lv~~l~r~G--~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 625 LKHYACVVDLLGRAG--KLTEAYNFINKM-PI----TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 345555666666666 666666665542 23 333 3333333334445566666666677777777777777766
Q ss_pred hhccC
Q 033440 111 CSGSH 115 (119)
Q Consensus 111 ~a~~~ 115 (119)
++.+|
T Consensus 697 l~n~y 701 (857)
T PLN03077 697 LCNLY 701 (857)
T ss_pred HHHHH
Confidence 66554
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.87 E-value=0.15 Score=36.62 Aligned_cols=85 Identities=14% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh-hccCC-----------------------------CcchHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN-QNVLS-----------------------------DSENSVLYANRAH 79 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~~~~-----------------------------~~~~~~~~~~~a~ 79 (119)
.+....+.+..+...| +..+|+..+...+. ..... ....+.++..+|.
T Consensus 183 ~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~ 260 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAK 260 (352)
T ss_pred CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 4677778888899988 88999998888887 21100 0122345566666
Q ss_pred HHHHh------cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 80 VNLLL------GNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 80 ~~~~l------~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
....+ +..++++..|++++.++|.+.++|+..|..+.
T Consensus 261 w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 261 WLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 66666 77888999999999999999999999887654
No 275
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.0088 Score=43.69 Aligned_cols=85 Identities=21% Similarity=0.121 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---C------------CCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---L------------SDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
......+.|+..|+.+ +|..|...|.+++.... . ..+.-...+.+++.|-++++.+..|+..+
T Consensus 221 ~~~~~k~~~~~~~kk~--~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQ--RYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhccchhhhhhc--cHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 3455677899999988 99999999999886521 0 01112245566677777777777777777
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
..+++.++...++||+++..+.
T Consensus 299 ~~~~~~~~s~tka~~Rr~~~~~ 320 (372)
T KOG0546|consen 299 NEALRDERSKTKAHYRRGQAYK 320 (372)
T ss_pred ccccccChhhCcHHHHHHhHHH
Confidence 7777777777777777776653
No 276
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.82 E-value=0.27 Score=34.23 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhc--cCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQN--VLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
...++|..++..| +|++|+..++.+...- +++..-...+...+..|...+|+.++.+..+-+.+
T Consensus 180 l~~~~A~ey~~~g--~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLG--DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3458899999999 9999999999997541 22234455677888899999999999999877665
No 277
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.80 E-value=0.43 Score=38.79 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+..+|..+...| ++++|...+.+++.......+ .....+.++|.++...|++++|...+++++.+
T Consensus 491 ~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 491 IVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667888888888 999999999999876322111 12346678889999999999999999998886
No 278
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.74 E-value=0.58 Score=38.04 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC----cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD----SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
...+..+|..++..| ++++|...+.+++....... +....++..+|.++...|++++|...+.+++.+.
T Consensus 531 ~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 531 LWSLLQQSEILFAQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 445677888999988 99999999999998633211 2233456678888999999999999999988763
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.67 Score=33.40 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=55.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHH---------------HHhh------cc---------
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTR---------------AINQ------NV--------- 64 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~---------------al~~------~~--------- 64 (119)
...+.++.+....|+.+.+...++.++...| +.+.|...+.. -|++ .|
T Consensus 152 ~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~ 229 (304)
T COG3118 152 EAAPLLKQALQAAPENSEAKLLLAECLLAAG--DVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRL 229 (304)
T ss_pred hHHHHHHHHHHhCcccchHHHHHHHHHHHcC--ChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4445666777777777777777777777777 77666655433 1111 01
Q ss_pred CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 65 LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 65 ~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
..+|++..+-+.+|..+...|++++|++.+-..++.+
T Consensus 230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 230 AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1267777777777777777888888777776666653
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.62 E-value=0.48 Score=36.48 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFTDAEEALKL-CPTNVKVVIL 110 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~~ 110 (119)
-..+|.++-+.| +.++|++.+...+.. .|. +..++.++..|++.++.|.++.....+-=++ -|......|.
T Consensus 262 KrRLAmCarklG--r~~EAIk~~rdLlke----~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 262 KRRLAMCARKLG--RLREAIKMFRDLLKE----FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHHHHHhC--ChHHHHHHHHHHHhh----CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 456899999999 999999999999987 553 6679999999999999999999888775333 2445554554
Q ss_pred hh
Q 033440 111 CS 112 (119)
Q Consensus 111 ~a 112 (119)
.|
T Consensus 336 aA 337 (539)
T PF04184_consen 336 AA 337 (539)
T ss_pred HH
Confidence 44
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.62 E-value=0.76 Score=32.88 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
......++..++..+...| +++.+++.+++.+.. +|-+-.+|..+=..|.+.|+...|+..|++.-.
T Consensus 149 ~e~~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 149 EELFIKALTKLAEALIACG--RADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556778888999999988 999999999999999 999999999999999999999999999998765
No 282
>PLN03077 Protein ECB2; Provisional
Probab=94.26 E-value=0.31 Score=39.67 Aligned_cols=66 Identities=8% Similarity=-0.064 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|+ +..|..+-..+...| +.+.+....++.+++ .|+++..|..++.+|...|+|++|....+...+
T Consensus 654 ~pd-~~~~~aLl~ac~~~~--~~e~~e~~a~~l~~l----~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 654 TPD-PAVWGALLNACRIHR--HVELGELAAQHIFEL----DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh----CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 443 666777777777777 999999999999999 999999999999999999999999998877654
No 283
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=1.1 Score=33.77 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=70.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC----------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
+...+....++...+|+....|.-+=.++-..- +.-.++-+.....+|.. .|....+++.|..++.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~----npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV----NPKSYGAWHHRKWVLQ 120 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh----CchhHHHHHHHHHHHH
Confidence 445556666777788888887765533333211 00345566777888888 9999999999999999
Q ss_pred HhcC--HHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 83 LLGN--YRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+.+. |..=++.|.++++.||.|..+|--+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 8764 7899999999999999987776443
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.23 E-value=0.68 Score=34.46 Aligned_cols=72 Identities=6% Similarity=0.002 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHH---hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH---------hcCHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVK---KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---------LGNYRRAFTDAEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~---~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---------l~~~~~A~~~~~~a 97 (119)
....-...|.++.+ .| +.++|+..+..++... .+.++..+.-+|-+|-. ....++|+..|+++
T Consensus 178 ~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~---~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPG--DREKALQILLPVLESD---ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred chHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 44555677888888 78 9999999999966542 45677777778877654 23588999999999
Q ss_pred HhhCCCCHH
Q 033440 98 LKLCPTNVK 106 (119)
Q Consensus 98 l~l~p~~~~ 106 (119)
.+++|+...
T Consensus 253 Fe~~~~~Y~ 261 (374)
T PF13281_consen 253 FEIEPDYYS 261 (374)
T ss_pred HcCCccccc
Confidence 999987543
No 285
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.06 E-value=0.3 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHH--HHHHHhh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDC--YTRAINQ 62 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~--~~~al~~ 62 (119)
+.++..|..+.++| ++++|+.. |.-+..+
T Consensus 2 e~~y~~a~~~y~~~--ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKG--KYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHh
Confidence 45777899999988 99999999 4477766
No 286
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.03 E-value=0.75 Score=32.65 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+|....+..-+.+ ..+.|-..|.+|+.. .+....+|...|..-+. .++.+.|...++.+++.-|.+...|..-
T Consensus 3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--GIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhC--ChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4666666777766 789999999999976 67788999999988666 5667779999999999999888777654
No 287
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=1.3 Score=34.25 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
+.-+...|..-|.--..++ +++.|-..+++||.. +..+.+++...+.+-++.+....|....++|+.+=|.--+
T Consensus 69 nR~~~~~WikYaqwEesq~--e~~RARSv~ERALdv----d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQK--EIQRARSVFERALDV----DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhc----ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 3444555666666666655 899999999999998 8889999999999999999999999999999999998777
Q ss_pred HHHHh
Q 033440 107 VVILC 111 (119)
Q Consensus 107 a~~~~ 111 (119)
.||.-
T Consensus 143 lWyKY 147 (677)
T KOG1915|consen 143 LWYKY 147 (677)
T ss_pred HHHHH
Confidence 77753
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.81 Score=32.99 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..+.....+......| ++..|...+..++.. .|++..+...++.||...|+.+.|...+..
T Consensus 133 ~~e~~~~~~~~~~~~e--~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 133 EEEEALAEAKELIEAE--DFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHhhhhhhcc--chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3455667788889988 999999999999999 999999999999999999999887765544
No 289
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.83 E-value=0.55 Score=26.85 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
++..+..++..+-+.| ++++|+.+|+.+|+..- ...|+++....-+. +...|-+-++..++.
T Consensus 5 ~A~~~a~~AVe~D~~g--r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~----ki~eY~~Rae~Lk~~ 69 (75)
T cd02682 5 MARKYAINAVKAEKEG--NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ----MINEYKRRIEVLEKQ 69 (75)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4667777888888888 99999999998887622 12566665333232 234444444444443
No 290
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=1.1 Score=35.27 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=68.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHH-HHhhccCCCcchHHHHHHH------HHHHHHhcCH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTR-AINQNVLSDSENSVLYANR------AHVNLLLGNY 87 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~------a~~~~~l~~~ 87 (119)
.+..........+|+.+.....+|......| ....++..+.+ +... .|.+......+ |..+..+|+.
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~--~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (620)
T COG3914 85 LAFLAKRIPLSVNPENCPAVQNLAAALELDG--LQFLALADISEIAEWL----SPDNAEFLGHLIRFYQLGRYLKLLGRT 158 (620)
T ss_pred hHHHHHhhhHhcCcccchHHHHHHHHHHHhh--hHHHHHHHHHHHHHhc----CcchHHHHhhHHHHHHHHHHHHHhccH
Confidence 4555667777889999999999999998877 55555554444 7788 78777666666 7777788999
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q 033440 88 RRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~ 108 (119)
.++.....+++++.|.++...
T Consensus 159 ~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 159 AEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHHHHHHhhhhhhhhH
Confidence 999999999999999885543
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=0.47 Score=33.35 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLL-LGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l 100 (119)
+..+.+.+++ |+.+ ++++|+.+++++|++ ..+. +..+..+|.+|.. +.++++||.+|+++-+.
T Consensus 74 at~YveA~~c-ykk~--~~~eAv~cL~~aieI----yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 74 ATTYVEAANC-YKKV--DPEEAVNCLEKAIEI----YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHHHH-hhcc--ChHHHHHHHHHHHHH----HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444 4545 889999999999988 4322 2344566777763 57888888888887664
No 292
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.88 E-value=0.84 Score=37.38 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=72.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.+...++......+++...+-.+-++|-..+ .+++|+.+|++++.. +|. -...+.+=.||.+-+.|.+--+.
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~--~~d~~~~~Ye~~~~~----~P~-eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG--KLDEAVHLYERANQK----YPS-EELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh----CCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777776777778888999999999998 999999999999999 998 77788888999999999988887
Q ss_pred HHHHHhhCCCCHHH
Q 033440 94 AEEALKLCPTNVKV 107 (119)
Q Consensus 94 ~~~al~l~p~~~~a 107 (119)
.-+.-+.-|.++..
T Consensus 133 a~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 133 ALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHhCCcccch
Confidence 77777777766543
No 293
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.47 E-value=0.21 Score=22.20 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYT 57 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~ 57 (119)
.....+|..+...| ++++|...++
T Consensus 2 ~a~~~la~~~~~~G--~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQG--DPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHh
Confidence 45678999999999 9999998775
No 294
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=92.41 E-value=0.55 Score=25.98 Aligned_cols=31 Identities=39% Similarity=0.563 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|..+-+.| ++++|+.+|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g--~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAG--NYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 3556667777787878 999999999999876
No 295
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.11 E-value=1 Score=31.48 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
.+.+.+ ..++|+.....-+.. .|.+.....-+-..+...|+|++|...++-+-.+.|++.
T Consensus 10 eLL~~~--sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDN--SLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhc--cHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456666 889999999998988 888887777777778889999999999999999998763
No 296
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.53 E-value=0.89 Score=32.86 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++++|+..|.+.+++.+....+-..++-..-.+++++++|++.+..|++.|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 7999999999999995444445556777788899999999999999998775
No 297
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.45 E-value=3.1 Score=36.10 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=60.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+.+.++...+........|...|..++++. +-++|-+.+.+|+.-.|. .+.......-|+.-++.|+.+.+...+
T Consensus 1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--e~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQN--EAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhccc--HHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHH
Confidence 4455555555555556677777788888766 667777778888877332 236666667777777777777777777
Q ss_pred HHHHhhCCCCHHHHH
Q 033440 95 EEALKLCPTNVKVVI 109 (119)
Q Consensus 95 ~~al~l~p~~~~a~~ 109 (119)
.-.+.-.|...+.|.
T Consensus 1624 Egll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1624 EGLLSAYPKRTDLWS 1638 (1710)
T ss_pred HHHHhhCccchhHHH
Confidence 777777775554443
No 298
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.27 E-value=0.81 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..++..+=+.| +|++|+.+|..+|+.
T Consensus 5 ~Ai~~a~~Ave~D~~g--~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEG--RYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 4666777788888888 999999999999986
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.23 E-value=1 Score=35.17 Aligned_cols=77 Identities=21% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhC--hh-cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhCCCCH
Q 033440 32 IELKEKGNEYVKKG--KK-HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 32 ~~~~~~g~~~~~~g--~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~ 105 (119)
.+...+|.+|.+.. .. |++.|+.+|.++-+. .++.+.+.+|.|+..-. ++..|.+.|..|.... +.
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~ 360 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HI 360 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--Ch
Confidence 34566777777632 12 466777777777776 45566677777776544 4667777777765543 56
Q ss_pred HHHHHhhccCc
Q 033440 106 KVVILCSGSHP 116 (119)
Q Consensus 106 ~a~~~~a~~~~ 116 (119)
.+.+++|.+|.
T Consensus 361 ~A~~~la~~y~ 371 (552)
T KOG1550|consen 361 LAIYRLALCYE 371 (552)
T ss_pred HHHHHHHHHHH
Confidence 67777776653
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.07 E-value=4.7 Score=29.42 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..+...+..+...| .+.+|+.+.++++.+ +|.+-..+..+-..+..+|+--.++.+|.+
T Consensus 280 kllgkva~~yle~g--~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 280 KLLGKVARAYLEAG--KPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33444555666666 788888888888887 777776666666677777776666666655
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.04 E-value=3.7 Score=32.11 Aligned_cols=89 Identities=17% Similarity=0.050 Sum_probs=65.0
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRA 90 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A 90 (119)
++..+..+.. -..+.+.+.+|..+.... ..|+..|..+|..|... ....+.+++|.||.. ..+...|
T Consensus 312 A~~~~~~aA~--~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 312 ALKLYTKAAE--LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred HHHHHHHHHh--cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3444444333 345667778888887643 02789999999999887 577888899999875 3479999
Q ss_pred HHHHHHHHhhCCCCHHHHHHhhcc
Q 033440 91 FTDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
+..+.++.+.+ ++.+.+.++..
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHH
Confidence 99999999988 56666666543
No 302
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=90.85 E-value=0.87 Score=26.08 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...=+.| +|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g--~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEG--RFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 3556667777788878 999999999998875
No 303
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.82 E-value=0.67 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+++|.+|+.+|+++.|....++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 304
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.82 E-value=0.83 Score=26.13 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
.+..+...|...=..| +|++|+.+|.++|+.+
T Consensus 5 kai~Lv~~A~~eD~~g--ny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKG--NAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhh--hHHHHHHHHHHHHHHH
Confidence 4555666676666767 9999999999999873
No 305
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.78 E-value=0.82 Score=20.47 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+++.|...|++++...|.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34455555555555555555554443
No 306
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.68 E-value=0.68 Score=32.49 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=43.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
...+.+.++..+-|..+..|..+|....+.| +++.|...|++.+++
T Consensus 13 aaaely~qal~lap~w~~gwfR~g~~~ekag--~~daAa~a~~~~L~l 58 (287)
T COG4976 13 AAAELYNQALELAPEWAAGWFRLGEYTEKAG--EFDAAAAAYEEVLEL 58 (287)
T ss_pred HHHHHHHHHhhcCchhhhhhhhcchhhhhcc--cHHHHHHHHHHHHcC
Confidence 5667888999999999999999999999999 999999999999999
No 307
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.22 Score=36.66 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+...++.+ ++..|+..-..+++. ++....+++.++..+..+.++++|+++...+....|++....
T Consensus 280 n~~~~~lk~~--~~~~a~~~~~~~~~~----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 280 NLAAVGLKVK--GRGGARFRTNEALRD----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred chHHhccccc--CCCcceecccccccc----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 3555566666 677777777777776 888999999999999999999999999999999999876543
No 308
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.17 E-value=0.76 Score=34.94 Aligned_cols=57 Identities=21% Similarity=0.088 Sum_probs=50.9
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+..+|.+.+ +++.|+..-.+.|.+ +|..+--|...|.|+..+.+|.+|...+--+
T Consensus 232 tklv~CYL~~r--kpdlALnh~hrsI~l----nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 232 TKLVTCYLRMR--KPDLALNHSHRSINL----NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhcC--CCchHHHHHhhhhhc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899998 899999999999999 9999999999999999999999998765543
No 309
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=0.95 Score=35.10 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=70.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
...+.+.......|..+..+...+..+...| +-+.|+..++..++. ....-....++.+|.++..+.+|.+|..++
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g--~~eaa~~~~~~~v~~--~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKG--NSEAAIDMESLSIPI--RMKQVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcc--cHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445566677788999999999999999988 788889888887771 214456678899999999999999999999
Q ss_pred HHHHhhCCCCHHHH
Q 033440 95 EEALKLCPTNVKVV 108 (119)
Q Consensus 95 ~~al~l~p~~~~a~ 108 (119)
....+.+. +..+.
T Consensus 327 ~~L~desd-WS~a~ 339 (546)
T KOG3783|consen 327 DLLRDESD-WSHAF 339 (546)
T ss_pred HHHHhhhh-hhHHH
Confidence 99888774 44443
No 310
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=90.11 E-value=4.8 Score=29.77 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=54.9
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...|+..+.++..+...+.-| +|..|-.++-....+.+..+++...+....-..-..+.+|+-|+++..+.-+
T Consensus 123 nf~~e~i~~lykyakfqyeCG--NY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECG--NYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhcc--CcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456888999999999999988 9999988865555554444555555555554555567899999999988765
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.07 E-value=3 Score=28.44 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+...++..++..+ ++++|+..+..++.. +....-.+.+-.++|.+++.+|.+++|+..+...
T Consensus 90 laaL~lAk~~ve~~--~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 90 LAALELAKAEVEAN--NLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 34557788899988 999999999999976 1112233456778899999999999999876654
No 312
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.87 E-value=2.1 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCHH-------HHHHHHHHHHhhCCCCHHHHH
Q 033440 74 YANRAHVNLLLGNYR-------RAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~-------~A~~~~~~al~l~p~~~~a~~ 109 (119)
+..+|.-+-+.|++. +|++.+.+++...|++.....
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 334444444445555 455555555666788766443
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.83 E-value=5.6 Score=28.40 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHh----ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-----------------HH
Q 033440 30 AAIELKEKGNEYVKK----GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-----------------YR 88 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-----------------~~ 88 (119)
.+..+..+|.-.... +.+++++++..|..++.. +|....+++..|..+.++=. ..
T Consensus 251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (352)
T PF02259_consen 251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL----DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLE 326 (352)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence 456666666666665 222899999999999999 99999999988887765421 24
Q ss_pred HHHHHHHHHHhhCCCC
Q 033440 89 RAFTDAEEALKLCPTN 104 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~ 104 (119)
.|+..|-+++.+.+.+
T Consensus 327 ~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 327 QAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHHhhCCCc
Confidence 5888999999998874
No 314
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=4.6 Score=28.79 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 48 HYSDAIDCYTRAINQ-NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 48 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+.+++.+|++|..+ .....|+.+..-..++.=..+..++++|++.|.+++.
T Consensus 86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 455555555555543 0111233333333344444444555555555555544
No 315
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.78 Score=32.61 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+.+....+++..++|.++..+...|.+|.+.| -+..|+..++..++. .|+++.+-.-+..
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~--c~~vAl~dl~~~~~~----~P~~~~a~~ir~~ 257 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG--CYHVALEDLSYFVEH----CPDDPIAEMIRAQ 257 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC--CchhhHHHHHHHHHh----CCCchHHHHHHHH
Confidence 345566678888899999999999999999999 999999999999999 7777765544433
No 316
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.60 E-value=1.3 Score=25.07 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...-..| +|++|+.+|.++++.
T Consensus 5 ~A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~ 35 (75)
T cd02678 5 KAIELVKKAIEEDNAG--NYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4566777788888888 999999999999976
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.52 E-value=1.3 Score=36.77 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+++|+..|++.-.. |.-|.=|...|.+|.++|+|+|-+..+..|++--|.++.
T Consensus 534 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 534 DFTQALSEFSYLHGG-----VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHHHhcCC-----CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 577888877775554 777888999999999999999999999999998777664
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.46 E-value=0.86 Score=34.11 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=45.8
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
...|+.+...+ .|+++++.|+.|+.+....+ | ....++..+|..+-.+.++++|+-...++.++-
T Consensus 126 l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 126 LSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 34677777777 78888888888887622211 1 123467778888888888888888888887763
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.29 E-value=2.9 Score=31.24 Aligned_cols=80 Identities=10% Similarity=-0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHH---hcCHHHHHHHHHHHH-hhCCCCHHHHHH
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLL---LGNYRRAFTDAEEAL-KLCPTNVKVVIL 110 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~---l~~~~~A~~~~~~al-~l~p~~~~a~~~ 110 (119)
++-..|-... +|+.-+.+.+..-. .|.. .++.+.+-+..|.++.+ .|+.++|+..+..++ ..++.+++.+-.
T Consensus 146 ~lllSyRdiq--dydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 146 NLLLSYRDIQ--DYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHhhhhh--hHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344455554 78887777655333 2321 34566777888999998 999999999999954 456678899988
Q ss_pred hhccCcCC
Q 033440 111 CSGSHPNQ 118 (119)
Q Consensus 111 ~a~~~~~~ 118 (119)
.|++|-..
T Consensus 223 ~GRIyKD~ 230 (374)
T PF13281_consen 223 LGRIYKDL 230 (374)
T ss_pred HHHHHHHH
Confidence 88887543
No 320
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.25 E-value=4.3 Score=35.33 Aligned_cols=98 Identities=11% Similarity=-0.058 Sum_probs=67.2
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-C-------------------------------
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV-L------------------------------- 65 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-~------------------------------- 65 (119)
+++++...-+|..+.-|.+--..+.+.+ +.++|-+...+||..+- +
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~Lels--EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELS--EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhh--hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 5666666667777777777777777766 77777777777775530 0
Q ss_pred --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..-+...+|..++.+|.+-+++.+|.+.++..++--....+.|...|..++.
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 0112335666677778888888888888888888666677777777766554
No 321
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.97 E-value=6.6 Score=30.64 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=66.0
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
...+++++.-+......|..-+..-++.. ....|-..+++|+.+ -|.--.+++.....--.+|+...|.+.+.+
T Consensus 93 RSv~ERALdvd~r~itLWlkYae~Emknk--~vNhARNv~dRAvt~----lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 93 RSVFERALDVDYRNITLWLKYAEFEMKNK--QVNHARNVWDRAVTI----LPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhh--hHhHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34455666666777778888888888876 899999999999999 666667777777777789999999999999
Q ss_pred HHhhCCC
Q 033440 97 ALKLCPT 103 (119)
Q Consensus 97 al~l~p~ 103 (119)
=++..|+
T Consensus 167 W~~w~P~ 173 (677)
T KOG1915|consen 167 WMEWEPD 173 (677)
T ss_pred HHcCCCc
Confidence 9999985
No 322
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.94 E-value=6.2 Score=27.68 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHh----c---CHHHHHHHH
Q 033440 27 KESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLL----G---NYRRAFTDA 94 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l----~---~~~~A~~~~ 94 (119)
....+.+.+.+|..+.. .. |+.+|...|.++.+. .... ....++++.+|..- + ....|+..+
T Consensus 105 ~~g~~~a~~~lg~~~~~G~gv~~--d~~~A~~~~~~Aa~~----g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 105 ADGLAEALFNLGLMYANGRGVPL--DLVKALKYYEKAAKL----GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred hcccHHHHHhHHHHHhcCCCccc--CHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 34455566667777765 33 677777777777776 3222 23355566665542 1 222566666
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++.... ++.+.+.+|.+|
T Consensus 179 ~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 179 RKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHHHhc--CHHHHHHHHHHH
Confidence 6665554 556666666554
No 323
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.67 E-value=2.4 Score=31.59 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=31.1
Q ss_pred HHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+..-| -|.+|.+..++++++ +|.+..+....++++...+++.++.+...+
T Consensus 185 L~E~g--~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 185 LEECG--IYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhc--cchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 34445 666777777777777 666666666666666666666666654443
No 324
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.56 E-value=1.8 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.....++...+..|+|.-|.+.++.++..+|+|..+...++.++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al 114 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL 114 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 45567788888999999999999999999999999988888765
No 325
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.30 E-value=3.9 Score=31.00 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+.-.++.++|..|..-| +.+.|++.|.++...|+. .-.-...+.|.-.+-.-+|+|........++-..
T Consensus 147 EsiRra~~Dl~dhy~~cG--~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCG--QLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 444667888999999999 999999999998888544 2344556666666667789999999988888665
No 326
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.05 E-value=1.9 Score=24.27 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|..+-..| ++++|+.+|..+++.
T Consensus 8 A~~li~~Av~~d~~g--~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAG--DYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 445566777777777 899999999998876
No 327
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=87.84 E-value=2 Score=24.12 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...-..| ++++|+.+|..+++.
T Consensus 6 a~~l~~~Av~~D~~g--~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDG--NYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 445566777777778 999999999999876
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.77 E-value=4.5 Score=31.45 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
...-+..|+.|... -+.++.++.+-..-..+-+.+.+.-..|.+++..+|+++..|..-|.
T Consensus 87 ~~rIv~lyr~at~r----f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~ 147 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR----FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK 147 (568)
T ss_pred HHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh
Confidence 34556779999988 78888888887665556666999999999999999999999876553
No 329
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.67 E-value=3 Score=28.94 Aligned_cols=61 Identities=13% Similarity=-0.014 Sum_probs=48.2
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~ 83 (119)
...+..+..+.|+....+.++|..+...| +.-.|+-+|.+++-. ....+.+..|+...+.+
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~--~~l~avy~y~Rsl~~----~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQG--DDLDAVYYYIRSLAV----RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSS----SB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhcccc--chHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH
Confidence 34677888999999999999999999988 999999999999965 43347777888777766
No 330
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=87.59 E-value=2.1 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..+|...-..| +|++|+.+|..+|+.
T Consensus 5 ~Ai~lv~~Av~~D~~g--~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRG--DAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 3455666777777777 999999999999976
No 331
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.15 E-value=7.5 Score=27.03 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~l 100 (119)
-+.|...|++|+++. |..+|....+..|.+..|+ .+|+.++|+..++++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 467788888888763 2235556667777777665 489999999999988763
No 332
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=6.2 Score=30.78 Aligned_cols=99 Identities=17% Similarity=0.031 Sum_probs=71.2
Q ss_pred CCCCCCCChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh---ccCCCcchHHHHHHHHH
Q 033440 6 DAESEPKTESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ---NVLSDSENSVLYANRAH 79 (119)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~a~ 79 (119)
.....|...+.++.++.+.+..|. .+....++|..++.--+ +++.|-..++++..+ +|........++.-++.
T Consensus 18 rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~-N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~ 96 (629)
T KOG2300|consen 18 RTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTK-NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAH 96 (629)
T ss_pred hhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHH
Confidence 344445556677777777655443 35566788888876653 899999999999876 34433444567778899
Q ss_pred HHHHhc-CHHHHHHHHHHHHhhCCCCH
Q 033440 80 VNLLLG-NYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 80 ~~~~l~-~~~~A~~~~~~al~l~p~~~ 105 (119)
+|.... .+..+....++++++...++
T Consensus 97 lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 97 LHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 999888 78889999999999876554
No 333
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.25 E-value=13 Score=28.41 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=49.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh--ccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ--NVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~--~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+...-|...-++...-...+..| ||+.|+.+.+...+. +..+ +.....++...+..... -+...|..+..+++
T Consensus 180 Aa~~Ap~l~WA~~AtLe~r~~~g--dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~ 256 (531)
T COG3898 180 AAEKAPQLPWAARATLEARCAAG--DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEAN 256 (531)
T ss_pred HHhhccCCchHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Confidence 33334444444444455566767 888888887766543 1111 11122222222222222 24777788888888
Q ss_pred hhCCCCHHHHHHhhccCc
Q 033440 99 KLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~ 116 (119)
++.|+.+.+-..-+.+++
T Consensus 257 KL~pdlvPaav~AAralf 274 (531)
T COG3898 257 KLAPDLVPAAVVAARALF 274 (531)
T ss_pred hcCCccchHHHHHHHHHH
Confidence 888887766655555443
No 334
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=1.4 Score=31.76 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=79.9
Q ss_pred CCCCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH------H
Q 033440 9 SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN------L 82 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~------~ 82 (119)
++...+++.+-++.+..-+|+.-..|..+-.++-.-.+.+|..-+....+.++. ++.|...+..|-.|. .
T Consensus 86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~----DsrNyH~W~YR~~vl~~ie~~~ 161 (328)
T COG5536 86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDS----DSRNYHVWSYRRWVLRTIEDLF 161 (328)
T ss_pred chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcc----cccccceeeeEeeeeecchhhc
Confidence 455677888999999999999999998887777655333788888888999999 898888877776666 4
Q ss_pred HhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 83 LLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.-..+.+..++...++..|+.|..||..+
T Consensus 162 N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 162 NFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred cchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 55567777888888999999999988765
No 335
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.87 E-value=7.5 Score=28.93 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=61.5
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.-...++.+..+-|+-...++.........| ++.++...+...+. +. -.....++..+|..+.++|+-++|...|
T Consensus 314 ~I~aLYdaL~~~apSPvV~LNRAVAla~~~G---p~agLa~ve~L~~~-~~-L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 314 AIDALYDALEQAAPSPVVTLNRAVALAMREG---PAAGLAMVEALLAR-PR-LDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred HHHHHHHHHHHhCCCCeEeehHHHHHHHhhh---HHhHHHHHHHhhcc-cc-cccccccHHHHHHHHHHhCChHHHHHHH
Confidence 3334455555555654444444444445545 77777766554442 11 1245567888999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhh
Q 033440 95 EEALKLCPTNVKVVILCS 112 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a 112 (119)
++++.+.++-...-+-+.
T Consensus 389 drAi~La~~~aer~~l~~ 406 (415)
T COG4941 389 DRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHhcCChHHHHHHHH
Confidence 999999988776555443
No 336
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.70 E-value=7 Score=24.79 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----C-c------chHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----D-S------ENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~-~------~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+..+|+..++.+ ++-.++-.|++|+.+...- . . -....-.|+|.-+..+|+.+-.+.++.-|
T Consensus 3 ~htllAd~a~~~~--~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEA--DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4667899999999 9999999999999762110 0 0 01234567888888899999888877654
No 337
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.65 E-value=3.2 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+.|.-.-..|++++|+..|.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444445666666666666554
No 338
>PF12854 PPR_1: PPR repeat
Probab=85.64 E-value=2.6 Score=19.82 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+...|..+-.++.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455567777788888888888887765
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.40 E-value=1.9 Score=31.32 Aligned_cols=40 Identities=23% Similarity=0.086 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
..+...+..|...|.+.+|++.+++++.++|-+...+..+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l 319 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL 319 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence 4556677889999999999999999999999776655544
No 340
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.10 E-value=8.7 Score=31.03 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=59.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHhcCHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+.....++++..+.-.-+..-.+-|..+..+. -|+++...|++.|.+.++... +.+..|.......+.-...+.|..
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~--yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHK--YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34455667766666555666677787777766 899999999999988555221 233444444444444457889999
Q ss_pred HHHHHHhhCC
Q 033440 93 DAEEALKLCP 102 (119)
Q Consensus 93 ~~~~al~l~p 102 (119)
.++++|+..|
T Consensus 572 LFEqaL~~Cp 581 (835)
T KOG2047|consen 572 LFEQALDGCP 581 (835)
T ss_pred HHHHHHhcCC
Confidence 9999999887
No 341
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.83 E-value=2.6 Score=32.81 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~ 83 (119)
+..+.+++.|..+...| ++-.|..+|.+++.. ...+|.+|..++.|.+.
T Consensus 333 ks~eilYNcG~~~Lh~g--rPl~AfqCf~~av~v----fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSG--RPLLAFQCFQKAVHV----FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcC--CcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHH
Confidence 34677899999999999 999999999999999 88999999999998764
No 342
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.58 E-value=3.5 Score=23.43 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...-..| +|++|+.+|..+|+.
T Consensus 6 A~~l~~~Ave~d~~~--~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEG--DYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 445556666666667 899999999988876
No 343
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.85 E-value=3.9 Score=33.14 Aligned_cols=76 Identities=22% Similarity=0.203 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
...+......+.++.+.|=++|..++.--+-++.. .|....++..++.||.-+++++-|+++.+-+...+|.++.+
T Consensus 88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~----~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALES----QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc----cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 44555566677777666555899999888888888 99999999999999999999999999988899999998544
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.84 E-value=9.3 Score=24.66 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=41.3
Q ss_pred hhHHhHHHHHH-hcHH-HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440 15 SEKADLDAIAA-LKES-AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 15 ~~~~~~~~~~~-~~~~-~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
+.+..++.+.+ ..|+ .-+.++-++..+++.+ +|+.++.+.+..++. .|+|..+..-
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk--eY~~s~~yvd~ll~~----e~~n~Qa~~L 110 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLK--EYSKSLRYVDALLET----EPNNRQALEL 110 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh--hHHHHHHHHHHHHhh----CCCcHHHHHH
Confidence 34455666553 3343 4455777888899988 999999999999999 8888876543
No 345
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.83 E-value=3.6 Score=30.96 Aligned_cols=66 Identities=21% Similarity=0.137 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--Ccch----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSEN----SVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....+|..+-+.. |+++|+-...+|.++-... +..+ ..+.+.++..+..+|+..+|.+.|+++.++
T Consensus 164 vcv~Lgslf~~l~--D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQLK--DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHHHH--hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3556788888877 9999999999988872211 1222 245677888999999999999999999775
No 346
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=83.50 E-value=3.3 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+....+.|..+-..| +.+.|+..|++++..
T Consensus 8 A~~~I~kaL~~dE~g--~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWG--DKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcC--CHHHHHHHHHHHHHH
Confidence 344455555555556 777777777777755
No 347
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.38 E-value=17 Score=27.29 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=56.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----------------C--CcchHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----------------S--DSENSVLY 74 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------~--~~~~~~~~ 74 (119)
.+.++..-.++.+||+-+.++.-++..--. -..+|.+++.+|+..... . -..+...|
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~----Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y 276 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEAT----TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY 276 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence 345666777788999999888877655433 345666666666643110 0 11233333
Q ss_pred --HHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 75 --ANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 75 --~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
..++.|-.++|+..+|+..++...+--|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 4568899999999999999988776655
No 348
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=82.91 E-value=8.2 Score=23.33 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
...+......|...+-.| ||..|.+...++-+. .+..+..|.--+.+=..+|
T Consensus 56 ~~ka~~al~~Gl~al~~G--~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEG--DWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcC
Confidence 445666677788888888 888888888888776 5555555554444444443
No 349
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=15 Score=26.25 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 48 HYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+++.|+.+|++++.+.... ...-...+...+.++.++.+|.+|-..+.+
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 5666666666665541111 112234555666667777777777666655
No 350
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=82.38 E-value=3.2 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
..+|+....+|++.
T Consensus 3 l~~A~~l~~~Ave~ 16 (75)
T cd02677 3 LEQAAELIRLALEK 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777766
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.31 E-value=11 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
|.-.|-.....++.- .|.+|....-++.++..+|.|+.+..+..-
T Consensus 304 d~~aas~~~~~~lr~----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~ 348 (831)
T PRK15180 304 DIIAASQQLFAALRN----QQQDPVLIQLRSVIFSHLGYYEQAYQDISD 348 (831)
T ss_pred CHHHHHHHHHHHHHh----CCCCchhhHHHHHHHHHhhhHHHHHHHhhc
Confidence 555555555555555 555665555566666666666666555443
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.12 E-value=3.3 Score=33.00 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=59.7
Q ss_pred HHHHHH-hChhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 38 GNEYVK-KGKKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 38 g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..|.+ .| +...|+.++..|+.. .|... ....++|.++++-|-..+|-..+.++|.++-..+-.++..|.++
T Consensus 613 aglywr~~g--n~~~a~~cl~~a~~~----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 613 AGLYWRAVG--NSTFAIACLQRALNL----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY 686 (886)
T ss_pred ccceeeecC--CcHHHHHHHHHHhcc----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence 334443 44 999999999999998 66433 45688999999999999999999999999977788888888876
Q ss_pred c
Q 033440 116 P 116 (119)
Q Consensus 116 ~ 116 (119)
+
T Consensus 687 l 687 (886)
T KOG4507|consen 687 L 687 (886)
T ss_pred H
Confidence 4
No 353
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.04 E-value=5.8 Score=29.63 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
......+...|+.++.++ +++.|...|..|.+++... .-+....++-.|..++.+++.+..+-
T Consensus 38 ~~~~e~lv~~G~~~~~~~--d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNN--DIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHhhhHHHhcc--cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445777889999999998 9999999999999873221 23456677788888888887776553
No 354
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.01 E-value=3.3 Score=18.20 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 76 NRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+-.+|.+.|++++|...+++..+
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhH
Confidence 344455555666666665555443
No 355
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.79 E-value=13 Score=24.71 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..++...+.+.. .| ++.++.+.+.++..+|+.++|.....++..+-|.+
T Consensus 129 ~~~~~a~~~l~~----~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 129 AYIEWAERLLRR----RP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHh----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 333445555555 55 77788999999999999999999999999999943
No 356
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=81.31 E-value=19 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.....+.|-.++..| +|++|+..|+..|-.
T Consensus 204 L~~~Lk~gyk~~t~g--KF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 204 LEERLKEGYKLFTAG--KFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 444566789999998 999999999998855
No 357
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.23 E-value=11 Score=26.73 Aligned_cols=57 Identities=19% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHhChhcHHHHHHHHHHHHhhccCCCcc----hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhh
Q 033440 42 VKKGKKHYSDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLLLG-NYRRAFTDAEEALKL 100 (119)
Q Consensus 42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l 100 (119)
.++| |++.|...+.++-......+|+ -...+++.|.-....+ ++++|+.-.++++++
T Consensus 4 ~~~~--~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQG--DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhC--CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566 9999999999887663111343 3367888899999999 999999999998887
No 358
>PF13041 PPR_2: PPR repeat family
Probab=80.72 E-value=5.7 Score=20.05 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
.|..+-..+.+.| ++++|++.|++..+
T Consensus 5 ~yn~li~~~~~~~--~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAG--KFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCc--CHHHHHHHHHHHHH
Confidence 3444445555544 55555555555443
No 359
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=80.48 E-value=12 Score=26.29 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440 49 YSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~ 99 (119)
-+.|...|+.|+++. |..+|-...+..|.+..|+ -+++.++|+...++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457888899998762 2224555556667777666 46999999988887765
No 360
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.16 E-value=24 Score=27.01 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=33.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
...+......++.|+.+.+-...+..+|+.| +..++-.+++.+...
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~--~~rKg~~ilE~aWK~ 292 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDG--NLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhcc--chhhhhhHHHHHHhc
Confidence 3444555566777777777778888888887 788877777777766
No 361
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.99 E-value=14 Score=23.98 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.-++--+.+.....- ...+|..+..+|.+|-++|+..++-...++|.+-
T Consensus 101 kkDqLdki~~~l~kn----~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 101 KKDQLDKIYNELKKN----EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhhc----cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334444444444433 5568899999999999999999999999998764
No 362
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.89 E-value=21 Score=28.98 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...+...+.+..+|.+.. +.+.|++.+.+|-+. +|.++..-.....+...-|+-++|+.........
T Consensus 390 ~~~FaK~qR~l~~CYL~L~--QLD~A~E~~~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 390 SDRFAKIQRALQVCYLKLE--QLDNAVEVYQEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3445677788899999998 999999999999999 9988887777777777789999999988776554
No 363
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.88 E-value=23 Score=26.48 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL--LGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l 100 (119)
.+.....++..+|+.+ +|..|...+...+... .++. ...+..++.+|.. .-++.+|...+++.+..
T Consensus 130 ~~~~~~~~a~~l~n~~--~y~aA~~~l~~l~~rl---~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRY--DYGAAARILEELLRRL---PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456778899999998 9999999999988741 2212 4567777777764 55799999999987764
No 364
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.76 E-value=13 Score=29.09 Aligned_cols=54 Identities=24% Similarity=0.189 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
+....+++...|++| +|--+.+..++++-. +|++..+..-.+.|+..+|--.|+
T Consensus 452 adrVl~la~ea~~kG--dyrW~a~lln~~VfA----dp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 452 ADRVLELAREAFDKG--DYRWAAELLNQAVFA----DPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHHhcc--cchHHHHHHhhHHhc----CCccHHHHHHHHhHHHHhhhhhcc
Confidence 555678999999988 999999999999999 999999999999999998854443
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.62 E-value=9.9 Score=22.19 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV 64 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~ 64 (119)
....++..+|..+...| ++++|+..++++|.+..
T Consensus 39 ~~~~all~lA~~~~~~G--~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFG--HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHH
Confidence 34667888999999999 99999999999998833
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=14 Score=29.26 Aligned_cols=69 Identities=20% Similarity=0.020 Sum_probs=47.5
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhhCCCCHHHHHHh
Q 033440 37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE-ALKLCPTNVKVVILC 111 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~-al~l~p~~~~a~~~~ 111 (119)
+.......+ +...+.-....++.. +|++..++.+++.++...|....++....+ +....|++.....-+
T Consensus 73 lsi~~~~~~--~~~~~~~~~~~~l~~----~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLA--DSTLAFLAKRIPLSV----NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccc--cchhHHHHHhhhHhc----CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 344445555 555566666777777 888888888888888887777666666655 777888777665544
No 367
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.86 E-value=7.3 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 76 NRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+|.-.=+.|+|++|+..|.++++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 333444445666666666666554
No 368
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=78.59 E-value=16 Score=28.90 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=55.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..++.||.+..+|..+-..+..+ -+++.-+.|++.+.. -|..+.++..-..--+.-++|+.....+.++|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~---~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ---PIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC---CHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 556678999999999888888764 588999999998888 777776666666666677888888877777654
No 369
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.28 E-value=6.2 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.|+.|.+..+++|....+..++++..+|..|.
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 67888888888888844444455544444443
No 370
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.92 E-value=8.7 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.2
Q ss_pred HHHHHHHHHHH---------HhcCHHHHHHHHHHHHhhCCCC
Q 033440 72 VLYANRAHVNL---------LLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 72 ~~~~~~a~~~~---------~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..|-..|..++ ..+++..|+..+++|+.++|.-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 34555566553 3457889999999999999864
No 371
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.38 E-value=8.4 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhCCCCH
Q 033440 87 YRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~ 105 (119)
|.+|+..+..+++..|+..
T Consensus 29 Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHhhCCCHH
Confidence 4555555555666677543
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.50 E-value=18 Score=26.02 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 69 ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
....++..++..+...|+++.+++...+.+..+|-+..+|..+=.+|+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 566788889999999999999999999999999999999887755543
No 373
>PF13041 PPR_2: PPR repeat family
Probab=76.43 E-value=8.1 Score=19.45 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-CCCHHHHHH
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLC-PTNVKVVIL 110 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~ 110 (119)
...|..+=..+.+.|++++|++.+++..+.. +.+...|..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4456777788999999999999999998754 224444433
No 374
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=75.88 E-value=10 Score=23.73 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=24.5
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~ 72 (119)
..+|..+...| ++++|+..+-.||.. +|....
T Consensus 67 V~lGE~L~~~G--~~~~aa~hf~nAl~V----~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQG--DYEEAAEHFYNALKV----CPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHT----SSSHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHh----CCCHHH
Confidence 46788888888 899999999999988 665443
No 375
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=75.19 E-value=6.2 Score=17.54 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 74 YANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|..+-.+|.+.|++++|+..+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445567777888888888877655
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.15 E-value=29 Score=25.18 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=59.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH---hcCHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---LGNYRRA 90 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---l~~~~~A 90 (119)
+..+..++++++.+|+....+...-....+.. +.++....+++++.. +|.++.++...-..... .-.+.+.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~--~~~~l~~~we~~l~~----~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVW--DSEKLAKKWEELLFK----NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 34556788888889988888877777777777 888888999999999 88888777654333222 2257778
Q ss_pred HHHHHHHHhh
Q 033440 91 FTDAEEALKL 100 (119)
Q Consensus 91 ~~~~~~al~l 100 (119)
...|.++|+.
T Consensus 122 ~~~y~~~l~~ 131 (321)
T PF08424_consen 122 RDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHH
Confidence 8877777663
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.97 E-value=26 Score=26.85 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+....-+-..|...+ -|++|-....+..--...++.+.+-.++..|.+..-.++|..|..++-.+++..|.+
T Consensus 208 qavLiN~LLr~yL~n~--lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNK--LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3333444444455544 666666655443311111123556677788888888999999999999999998863
No 378
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.51 E-value=53 Score=27.88 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC---------------------------------C-------
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---------------------------------S------- 66 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------------~------- 66 (119)
+-++...-.+.|-.+...| .|.+|++.|+..|-.+|. .
T Consensus 987 ~l~~l~~kl~~gy~ltt~g--Kf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEG--KFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred cHHHHHHHHHHHHhhhccC--cHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence 3445566678888999999 999999999988854321 0
Q ss_pred --------------CcchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 67 --------------DSENS-VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 67 --------------~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.|..- .++..--.++++++++..|-..+++.+++.|.-+.|-
T Consensus 1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 11111 1112222367899999999999999999998665543
No 379
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=74.39 E-value=11 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
.+++|+.+..+|++.
T Consensus 4 ~~~~A~~li~~Av~~ 18 (77)
T smart00745 4 YLSKAKELISKALKA 18 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777666
No 380
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.81 E-value=13 Score=34.15 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+.++--.+...| +|..|..+|++++.. +|+....+...-.+.+..|.+...+...+-...-.++..+-++.
T Consensus 1452 l~~qil~~e~~g--~~~da~~Cye~~~q~----~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s 1522 (2382)
T KOG0890|consen 1452 LYQQILEHEASG--NWADAAACYERLIQK----DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNS 1522 (2382)
T ss_pred HHHHHHHHHhhc--cHHHHHHHHHHhhcC----CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHH
Confidence 334444555556 777777777777777 77666666666666666777777776555544444444444433
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.46 E-value=38 Score=28.33 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.---.|.+....| +++.|++..+.++...|.. .-....++...|.+..-.|++.+|......+.+.
T Consensus 460 ~~aL~a~val~~~--~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 460 FQALRAQVALNRG--DPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3334577778877 9999999999999984432 2345578888999999999999999998888776
No 382
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.21 E-value=4.2 Score=34.78 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=58.6
Q ss_pred HHHhcH--HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 23 IAALKE--SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 23 ~~~~~~--~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+....| +.+....+.|......| .|.+|.+ ..+++.+..++ .|+....|..++..+.+++++++|+....+
T Consensus 922 ik~s~P~~~~a~~~~e~gq~~~~e~--~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 922 IKHSSPTVSEAKDSPEQGQEALLED--GFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred cccCCCccchhhhhhhhhhhhhccc--chhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 344455 67778889999999988 8998888 55555432211 788999999999999999999999999988
Q ss_pred HHhh
Q 033440 97 ALKL 100 (119)
Q Consensus 97 al~l 100 (119)
++-+
T Consensus 999 a~ii 1002 (1236)
T KOG1839|consen 999 ACII 1002 (1236)
T ss_pred ceee
Confidence 7655
No 383
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=70.25 E-value=13 Score=32.11 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 24 AALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..+.|+.+..+..++..+.+.| ++++|+..-.++..+..+ ..|+....|.+++...+..++...|+..+.+++.
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~--d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLG--DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhc--chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 3457888999999999999999 999999998888765443 3678889999999999999999999999999877
Q ss_pred h
Q 033440 100 L 100 (119)
Q Consensus 100 l 100 (119)
+
T Consensus 1044 l 1044 (1236)
T KOG1839|consen 1044 L 1044 (1236)
T ss_pred h
Confidence 6
No 384
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=70.21 E-value=16 Score=20.44 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
.+.|+.+..+|++.
T Consensus 3 ~~~A~~l~~~Av~~ 16 (75)
T cd02678 3 LQKAIELVKKAIEE 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666554
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.98 E-value=23 Score=24.64 Aligned_cols=52 Identities=23% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....++++++|++..... ..--..+...+|.-|+..|+|++|+..++.+...
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345566677776652211 2334456678899999999999999999999654
No 386
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=68.31 E-value=18 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
.+.|+.+..+|++.
T Consensus 3 ~~~a~~l~~~Av~~ 16 (75)
T cd02656 3 LQQAKELIKQAVKE 16 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666555
No 387
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=67.92 E-value=10 Score=16.93 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 74 YANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|..+-.++.+.|+++.|...++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666777776666666544
No 388
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=67.75 E-value=32 Score=25.00 Aligned_cols=33 Identities=33% Similarity=0.283 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhC
Q 033440 69 ENSVLYANRAHVNLLLG-----NYRRAFTDAEEALKLC 101 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~-----~~~~A~~~~~~al~l~ 101 (119)
+...++.-++.+++.++ +|++|+..+.+++...
T Consensus 174 ~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~~ 211 (359)
T cd08977 174 WKKAARALLARVYLYLANYTAADYAEALTAAEKSFKGG 211 (359)
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence 34456777788888888 8999999999998743
No 389
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.94 E-value=41 Score=23.52 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=64.7
Q ss_pred hhhHHhHHHHHHhcHHH-HHHHHHHHHHHHHh----Ch-hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----
Q 033440 14 ESEKADLDAIAALKESA-AIELKEKGNEYVKK----GK-KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---- 83 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~----g~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---- 83 (119)
.++...+.++....... ......+|..+..- +- .+...|+..|.++-.. . ++.+.+++|.+|..
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----G--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----c--CHHHHHHHHHHHHcCCCC
Confidence 45555666665543333 34466667666653 10 0233788999998888 3 78888999988865
Q ss_pred hcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440 84 LGNYRRAFTDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
-.++.+|+.-|.++.+... ..+++.++..
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~ 232 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLGLM 232 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 3489999999999999886 8888888743
No 390
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.00 E-value=7 Score=28.88 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
-|+++..+...+.-..+.|-|.+.-..|.+++..+|.|+..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI 145 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWI 145 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeee
Confidence 5788888888888778889999999999999999999988774
No 391
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.95 E-value=19 Score=22.55 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 74 YANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 74 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
...+|..+...|++++|+.++-+|+.+.|.-.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 34567888888999999999999999988543
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.82 E-value=24 Score=24.15 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.....+-.|....+.| ++++|+..|.+.+..
T Consensus 163 ~~~~l~YLigeL~rrlg--~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLG--NYDEAKRWFSRVIGS 194 (214)
T ss_pred hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHcC
Confidence 45677888999999999 999999999999986
No 393
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=64.77 E-value=59 Score=25.74 Aligned_cols=63 Identities=16% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhh--------ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQ--------NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+.....++..| .-++++++.-.+..- .+.--|+...+|..++.||...|.+.+|...+++++.
T Consensus 155 Y~ICr~Lm~~G--~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 155 YTICRHLMTAG--HSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 35566667777 788888876554321 1122578889999999999999999999999999875
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.60 E-value=23 Score=23.46 Aligned_cols=48 Identities=10% Similarity=-0.043 Sum_probs=38.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS 68 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~ 68 (119)
+...+..++.....| ++..+...+..+...| +.++|.....++..+ .|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G--~~~eA~~~~~~~~~l----yP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLG--DPEEARQWLARARRL----YP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CC
Confidence 344455555555566 5888888999999999 999999999999999 88
No 395
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.37 E-value=57 Score=26.46 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHH------------HHHH-HHHHHhcCHHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLY------------ANRA-HVNLLLGNYRR 89 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~------------~~~a-~~~~~l~~~~~ 89 (119)
..+....|..+|....+.+ ++..|.+++.++...-.. ....+...+ .|.| .|++..|++++
T Consensus 662 e~~s~~Kw~~Lg~~al~~~--~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAG--ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEE 739 (794)
T ss_pred hhcchHHHHHHHHHHhhcc--cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHH
Confidence 4456778999999999988 999999999998765110 011222211 2222 47888999999
Q ss_pred HHHHHHHH
Q 033440 90 AFTDAEEA 97 (119)
Q Consensus 90 A~~~~~~a 97 (119)
+++.+.+.
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 88765443
No 396
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.56 E-value=21 Score=22.92 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~ 73 (119)
-.++|-.++.+| +++++...+..||.. ++....+
T Consensus 84 qv~lGE~L~~qg--~~e~ga~h~~nAi~v----cgqpaqL 117 (143)
T KOG4056|consen 84 QVQLGEELLAQG--NEEEGAEHLANAIVV----CGQPAQL 117 (143)
T ss_pred HHHhHHHHHHcc--CHHHHHHHHHHHHhh----cCCHHHH
Confidence 347899999988 999999999999998 6665554
No 397
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.68 E-value=30 Score=25.47 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..-+|+.+.+.++.. +|.+..+..-+..+|..+|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~----s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKK----SPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 566778888888888 9999999999999999999999999988763
No 398
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=62.58 E-value=38 Score=21.66 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
.+..++++..-..++.+- +.+.|...|...++. .|+...+|..+-.+.
T Consensus 73 DeY~EaLRDfq~~~iaKl--e~e~Ae~vY~el~~~----~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKL--EPENAEQVYEELLEA----HPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHH----CcchHHHHHHHHHcc
Confidence 345667777777777766 888888889999988 888887776665443
No 399
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.00 E-value=50 Score=22.51 Aligned_cols=80 Identities=8% Similarity=0.027 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc--------------------------------C---CCcchHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV--------------------------------L---SDSENSVLYANR 77 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--------------------------------~---~~~~~~~~~~~~ 77 (119)
+....|....++| +...|+..|+.+-.-.+ . .+|-...+.-.+
T Consensus 96 A~mr~at~~a~kg--dta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 96 ARMRAATLLAQKG--DTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 3456677777766 99999998887653311 1 133334556667
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|.+-.+.|++.+|.+-|.++.. |..-+..-.+++++.
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 7888888999999998888766 555566666666543
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.91 E-value=20 Score=27.18 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
-+.+...++..|.+|+..+ +|..|++.+...+..
T Consensus 160 ~~~~is~~YyvGFaylMlr--RY~DAir~f~~iL~y 193 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLR--RYADAIRTFSQILLY 193 (404)
T ss_pred cchheehHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3557778999999999999 999999999998866
No 401
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=60.54 E-value=18 Score=17.13 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 87 YRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
++.|...|++.+...|+ ++.|.+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHH
Confidence 44555555555555542 444433
No 402
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=60.29 E-value=40 Score=28.52 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHH------HHHHHhhcc----------------CC--Cc---chHHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDC------YTRAINQNV----------------LS--DS---ENSVLYANRAHVNL 82 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~------~~~al~~~~----------------~~--~~---~~~~~~~~~a~~~~ 82 (119)
++..+...+..+.... +|++|+.. |..|+.+|. .. .| ....++..+|.|.+
T Consensus 1079 Dp~ll~RcadFF~~~~--qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQ--QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 5556666666667766 89999876 566665542 11 12 23468889999999
Q ss_pred HhcCHHHHHHHHHHH
Q 033440 83 LLGNYRRAFTDAEEA 97 (119)
Q Consensus 83 ~l~~~~~A~~~~~~a 97 (119)
+.|.|.-|-.-|.+|
T Consensus 1157 qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQA 1171 (1416)
T ss_pred hccchHHHHHHHhhh
Confidence 999999998877765
No 403
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=59.57 E-value=98 Score=25.42 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---------Cc------chHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---------DS------ENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------~~------~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
.+..|.+-|..-.++. +++.|+.+.+.|... |+. .| ....++...+...-.+|-++.....|
T Consensus 424 La~vw~~waemElrh~--~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHE--NFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHHHHHHhhh--hHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3556666666666655 777777777776654 211 01 11234444555555567777777777
Q ss_pred HHHHhhCCCCHHHHHHhh
Q 033440 95 EEALKLCPTNVKVVILCS 112 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a 112 (119)
++++++.--.|..-.+-|
T Consensus 501 driidLriaTPqii~NyA 518 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYA 518 (835)
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 777776654444444333
No 404
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.46 E-value=81 Score=24.41 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCc----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDS----ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
-+....++|.++-..+ ++++|+..|.++|.++.. ..+ .-...|..-+....+++.-..-+.+--++|+.
T Consensus 21 ~A~~~V~~gl~~dE~~--~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl~vL~k 97 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVN--DWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRLNVLKK 97 (560)
T ss_pred HHHHHHHhhcchhhhc--CHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777889999999988 999999999999987543 111 12223343344444555555555555455543
No 405
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.32 E-value=67 Score=27.95 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.+..|.++|.+-.+.| ...+|++.| + ..++|..|...-.+-.+.|+|++-+.++..+.+
T Consensus 1103 ~p~vWsqlakAQL~~~--~v~dAieSy-----i----kadDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGG--LVKDAIESY-----I----KADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred ChHHHHHHHHHHHhcC--chHHHHHHH-----H----hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4677899999999988 999999998 2 346777888888888889999999998887765
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.32 E-value=72 Score=25.47 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...-+++.+++.+|..+| .++-...+++.++. +=++...-..++..|.+ ++-..+...+.+++.
T Consensus 96 ~e~kmal~el~q~y~en~---n~~l~~lWer~ve~----dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 96 GESKMALLELLQCYKENG---NEQLYSLWERLVEY----DFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred cchHHHHHHHHHHHHhcC---chhhHHHHHHHHHh----cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 445778899999999877 46778889999999 88888888888777766 888888998988875
No 407
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=58.88 E-value=61 Score=22.85 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC---C---Cc----chHHHHHHHHHHHHHhcCHHHHHH---HHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---S---DS----ENSVLYANRAHVNLLLGNYRRAFT---DAEE 96 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~---~~----~~~~~~~~~a~~~~~l~~~~~A~~---~~~~ 96 (119)
.++.+++.|......+ .+++.|+..++++.+++.. . .| ....++..++.+|+..+.++.... ..+.
T Consensus 34 La~~~yn~G~~l~~~~-~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKK-DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4566778888888743 2899999999999998422 1 11 233567778888888877654333 3333
Q ss_pred HHhhCCCCHHHH
Q 033440 97 ALKLCPTNVKVV 108 (119)
Q Consensus 97 al~l~p~~~~a~ 108 (119)
+-.--|+.+..+
T Consensus 113 l~~e~~~~~~~~ 124 (278)
T PF08631_consen 113 LESEYGNKPEVF 124 (278)
T ss_pred HHHhCCCCcHHH
Confidence 333446655555
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.78 E-value=34 Score=19.82 Aligned_cols=42 Identities=7% Similarity=-0.085 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
-....|.=++...+..+|+...+++++..++.+.-+..+|.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 345566777788889999999999999988877766666543
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.54 E-value=42 Score=24.91 Aligned_cols=33 Identities=18% Similarity=-0.005 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|-....+..++.++...|+.+.|...+++||=
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999864
No 410
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=58.35 E-value=36 Score=20.65 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN 63 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
.+..+...|..++..| |.+.|--.|.+.+.+.
T Consensus 37 sa~~l~~~A~~~~~eg--d~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEG--DEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHH
Confidence 5778889999999999 9999999999988764
No 411
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.34 E-value=47 Score=26.51 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
..++.+|.+||...... .....--|...|-++++.++|.+|+....++-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777642221 223345567788899999999999998887644
No 412
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.08 E-value=29 Score=18.76 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.-+..-+...-.-+..+|++++|.++..+...
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555556667778888888887777654
No 413
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=58.05 E-value=36 Score=20.36 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..++++....+....+.| +|++|.....++=+.
T Consensus 11 ~aG~Ars~~~eAl~~a~~g--~fe~A~~~l~ea~~~ 44 (97)
T cd00215 11 HAGNARSKALEALKAAKEG--DFAEAEELLEEANDS 44 (97)
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4567888888888889988 999998887776543
No 414
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=57.84 E-value=35 Score=20.47 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..++++....+....+.| ||++|-+...++=+.
T Consensus 13 ~aG~Ars~~~eAl~~a~~g--dfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAG--DFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4567888888999999988 999998887776543
No 415
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.60 E-value=15 Score=28.12 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
-+..+.|.|+-.++++++|+..|+++|.+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 34567888888899999999999988774
No 416
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.47 E-value=1e+02 Score=24.88 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh-----cc------------CCCcchHHHHHHH---HHHHHHhcC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ-----NV------------LSDSENSVLYANR---AHVNLLLGN 86 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-----~~------------~~~~~~~~~~~~~---a~~~~~l~~ 86 (119)
.|=+...+.+.+.+.-.+| |.+.|..+..++|=. -| ...|.|-..|..+ =.-+.+.|-
T Consensus 280 sPYHvdsLLqva~~~r~qg--D~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQG--DREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred CCcchhHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4667788888999988888 999998888888732 11 1133343332222 223445789
Q ss_pred HHHHHHHHHHHHhhCCC-CHHHH
Q 033440 87 YRRAFTDAEEALKLCPT-NVKVV 108 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~-~~~a~ 108 (119)
|..|.+.|.-.+.++|. ++-+.
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhH
Confidence 99999999999999998 66544
No 417
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.30 E-value=1e+02 Score=24.53 Aligned_cols=70 Identities=11% Similarity=-0.063 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN----SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.+....++|..++..-. +++.|....++++.++.. ++. ..+.+-++.++.+.+... |+..+++.++.-.+
T Consensus 58 ea~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 58 EARVRLRLASILLEETE-NLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 67778899999986653 899999999999988433 222 233444566777777666 99999998886443
No 418
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=56.26 E-value=41 Score=20.01 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+++.....+....+.| +|++|...+.++=+.
T Consensus 10 ~aG~Ars~~~eAl~~a~~~--~fe~A~~~l~~a~~~ 43 (96)
T PF02255_consen 10 HAGDARSLAMEALKAAREG--DFEEAEELLKEADEE 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3556788888888888888 899888887776543
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.92 E-value=53 Score=23.21 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=55.7
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHH--------
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLL-------- 83 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~-------- 83 (119)
+.+.....-.+.+|+++..-.-+...+.-.| +|++|+..++-+-.+ .|+. +.+|.+.-.|...
T Consensus 19 dai~~a~~qVkakPtda~~RhflfqLlcvaG--dw~kAl~Ql~l~a~l----~p~~t~~a~lyr~lir~ea~R~evfag~ 92 (273)
T COG4455 19 DAIGLARDQVKAKPTDAGGRHFLFQLLCVAG--DWEKALAQLNLAATL----SPQDTVGASLYRHLIRCEAARNEVFAGG 92 (273)
T ss_pred HHHHHHHHHHhcCCccccchhHHHHHHhhcc--hHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHHHHhccC
Confidence 4555566666778988888888888888889 999999999888888 5543 3455555444332
Q ss_pred -----hc-CHHHHHHHHHHHHhhCCC
Q 033440 84 -----LG-NYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 84 -----l~-~~~~A~~~~~~al~l~p~ 103 (119)
+| ...+=+.....++.++.+
T Consensus 93 ~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 93 AVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 23 445555556666665543
No 420
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=55.48 E-value=1e+02 Score=24.23 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|.-++..|+|.+|.-...=+.++.| ++.++..+|.|++.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e 507 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME 507 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence 3446678999999999999999999 99999999988753
No 421
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=54.93 E-value=29 Score=29.97 Aligned_cols=57 Identities=28% Similarity=0.232 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhc
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLG 85 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~ 85 (119)
.....+..+..|+.+...| .|..|+..|..|++...... =+.+.++-..+.|.+.++
T Consensus 238 ~r~~gR~~k~~gd~~LlaG--~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAG--RWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcC--CHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 3456788889999999999 99999999999998754422 244566666666666544
No 422
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=54.88 E-value=34 Score=23.27 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
-++++..+|.|..++|+..+|+.+.+++.+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 458999999999999999999999998764
No 423
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=53.41 E-value=61 Score=24.55 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=45.6
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhh-ccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQ-NVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.+-..|++.+ .+.-+-..+...-.. .|+ ....-...++.+|.+|+-..++.+|.-.+.+|+...|.
T Consensus 182 lL~~iY~Rl~--~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLG--RFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhc--cHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3456677887 776666544332221 000 02233468899999999999999999999999999886
No 424
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=53.15 E-value=64 Score=21.29 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
.+--.++..+|.-|.+.|++++|++.|.++.+...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~ 67 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT 67 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence 34557788999999999999999999999888653
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.75 E-value=56 Score=20.27 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+...|...... .-....+..|..-|..+...|++++|...+.+++
T Consensus 81 ~~~~if~~l~~~--~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSK--GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHH--TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 444554444432 0045678888899999999999999999998875
No 426
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.25 E-value=26 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..|.+|+.+++|.+|+..+..+|-
T Consensus 276 Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999998888764
No 427
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=50.57 E-value=55 Score=19.82 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=28.7
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..++++....+....+.| ||++|.....++=+.
T Consensus 15 ~~aG~Ars~~~eAl~~ak~g--df~~A~~~l~eA~~~ 49 (104)
T PRK09591 15 LHSGNARTEVHEAFAAMREG--NFDLAEQKLNQSNEE 49 (104)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 35677888999999999988 999999888776653
No 428
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=97 Score=24.56 Aligned_cols=69 Identities=19% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc--CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+..++..|...|.++ ++.+|-....+.+...- +.....+-.+.-+|.+...+|+-.++....+-++.+.
T Consensus 445 a~~~~v~glfaf~qn--~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQN--DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 456778899999988 99999999999998720 0011122344556777888999999988888877764
No 429
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=49.86 E-value=26 Score=15.77 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=13.4
Q ss_pred HHHHHHHHHHh----cCHHHHHHHHHHHHh
Q 033440 74 YANRAHVNLLL----GNYRRAFTDAEEALK 99 (119)
Q Consensus 74 ~~~~a~~~~~l----~~~~~A~~~~~~al~ 99 (119)
.+++|.+|..- .++.+|+..++++.+
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 44455555421 256666666666544
No 430
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.79 E-value=19 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=18.7
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
...|.++....-.+.+....| +|+.++.....+
T Consensus 317 r~~~~~p~~i~l~~~i~~~lg--~ye~~~~~~s~~ 349 (831)
T PRK15180 317 RNQQQDPVLIQLRSVIFSHLG--YYEQAYQDISDV 349 (831)
T ss_pred HhCCCCchhhHHHHHHHHHhh--hHHHHHHHhhch
Confidence 334444444444556666666 777777665443
No 431
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=49.72 E-value=61 Score=24.04 Aligned_cols=41 Identities=29% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYA 75 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 75 (119)
+.+.+++..|...-+.| ..-+|+..|+.|+.+ .|+--..+.
T Consensus 17 kkA~~l~~~av~~Eq~G--~l~dai~fYR~AlqI----~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDG--SLYDAINFYRDALQI----VPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcC--cHHHHHHHHHhhhcC----CchHHHHHH
Confidence 35788899999999999 999999999999999 665544444
No 432
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=49.46 E-value=62 Score=20.05 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=29.3
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+++++...+....+.| +|++|.....++=+.
T Consensus 26 ~~aG~ArS~~~eAl~~Ak~g--dfe~A~~~l~eA~e~ 60 (115)
T PRK10454 26 INSGQARSLAYAALKQAKQG--DFAAAKAMMDQSRMA 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35678899999999999988 999999988777654
No 433
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=49.30 E-value=1.4e+02 Score=24.01 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
...+......+..+-..+ ..++|-.+|++.+.. +|+ ..++.-+.-+.+.|-..+|.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVN--ETERAYALYETLIAQ----NND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred chhHHHHHHHhhhhhhhh--hhHhHHHHHHHHHHh----CCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344555666677777777 889999999999999 877 445556666666676666665554
No 434
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.70 E-value=85 Score=21.44 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
+|=...+-..+|...++.| +|..|...|.+... +...|....+|+.+.+.+
T Consensus 163 n~mR~sArEALglAa~kag--d~a~A~~~F~qia~-----Da~aprnirqRAq~mldl 213 (221)
T COG4649 163 NPMRHSAREALGLAAYKAG--DFAKAKSWFVQIAN-----DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred ChhHHHHHHHHhHHHHhcc--chHHHHHHHHHHHc-----cccCcHHHHHHHHHHHHH
Confidence 3444455567899999999 99999999998665 355666667888877654
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.62 E-value=54 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al 60 (119)
...+.-|..-|..+...| ++++|.+.|+.+|
T Consensus 96 ~~~A~fY~~wA~~le~~~--~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 96 TKLALFYEEWAEFLEKRG--NFKKADEIYQLGI 126 (126)
T ss_dssp TTBHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHhhC
Confidence 445556667788888888 9999999999876
No 436
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.74 E-value=60 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
-..+.|..+|..+ .|+.|--+|.- ..-+..++..+..+|+|..|+...++|-.
T Consensus 1196 ~i~~vGdrcf~~~--~y~aAkl~y~~------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEK--MYEAAKLLYSN------------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hHHHHhHHHhhhh--hhHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3457799999988 99888777643 33356788889999999999999999844
No 437
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.55 E-value=61 Score=19.44 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
......|..-+..|+|..|.+...++-+..+...-.++.-++
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~ 101 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAAR 101 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 344556777788999999999999998876666666665454
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.07 E-value=81 Score=26.50 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.......-|+.++++| +|++|...|-+.|..
T Consensus 367 ~~~i~~kYgd~Ly~Kg--df~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKG--DFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHccc
Confidence 3444556677777766 777777777766654
No 439
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=47.06 E-value=44 Score=18.55 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTR 58 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~ 58 (119)
..+.++-+.++..| +|++|.+....
T Consensus 7 ~l~~~~F~~l~~~g--~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQG--QYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 45677889999999 99999887544
No 440
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=46.96 E-value=1.9e+02 Score=24.89 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=42.8
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHhhccC-----------------CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 38 GNEYVKKGKKHYSDAIDCYTRAINQNVL-----------------SDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
|.-+-..| +-+.|+..|..|-....- ....+..+.+.+|--|...|++.+|+..|.+|
T Consensus 919 gqYlES~G--emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 919 GQYLESVG--EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHhccc--chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55566667 999999999887654110 13345567778888899999999999988774
No 441
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.91 E-value=74 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~ 71 (119)
+...++-++-+|.+..-++ +|..|.+++-+|+.. .|...
T Consensus 243 nne~ARY~yY~GrIkaiql--dYssA~~~~~qa~rk----apq~~ 281 (493)
T KOG2581|consen 243 NNEWARYLYYLGRIKAIQL--DYSSALEYFLQALRK----APQHA 281 (493)
T ss_pred cHHHHHHHHHHhhHHHhhc--chhHHHHHHHHHHHh----Ccchh
Confidence 3467888899999999988 999999999999999 66543
No 442
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=45.80 E-value=31 Score=15.49 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=8.6
Q ss_pred HHHHHHHhhCCCCHHHHH
Q 033440 92 TDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~ 109 (119)
....+++..+|.|..+|.
T Consensus 4 ~~~~~~l~~~pknys~W~ 21 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWN 21 (31)
T ss_dssp HHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHCcccccHHH
Confidence 344445555555544443
No 443
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.39 E-value=55 Score=24.27 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+++..|.-..+-|...+|+..|+.|+++.|+-...+.
T Consensus 20 ~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 20 IALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 34455555555678889999999999999997666665
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.00 E-value=1.3e+02 Score=22.68 Aligned_cols=68 Identities=6% Similarity=-0.127 Sum_probs=47.5
Q ss_pred cHHHHHHHH--HHHHHHHHhChhcHHHHHHHHHHHHhhccC-CCcchHHHHHHHHHHHHH--hcCHHHHHHHHHH
Q 033440 27 KESAAIELK--EKGNEYVKKGKKHYSDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLL--LGNYRRAFTDAEE 96 (119)
Q Consensus 27 ~~~~~~~~~--~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~ 96 (119)
+|-..-... .++..+|+.+ +|..|...+.+++...+. ........+..++.+|.. .=++++|...+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~--dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAF--DYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 444444444 4566899988 999999999999976211 012345677788888875 4568899998884
No 445
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.55 E-value=1.4e+02 Score=22.90 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
+...|..+|..+..+| +++-|.++|.++=.
T Consensus 346 ~~~~W~~Lg~~AL~~g--~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQG--NIELAEECYQKAKD 375 (443)
T ss_dssp THHHHHHHHHHHHHTT--BHHHHHHHHHHCT-
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHhhcC
Confidence 5668999999999999 99999999887543
No 446
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=44.45 E-value=34 Score=15.69 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 033440 87 YRRAFTDAEEALK 99 (119)
Q Consensus 87 ~~~A~~~~~~al~ 99 (119)
+.+|+..++++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5555555555544
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=44.29 E-value=1.3e+02 Score=24.02 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
.+.+-..|+..|.. .|..-..+-.-|..-.++|..+.+++.+++++.-=|.....|
T Consensus 61 ~~~~r~~y~~fL~k----yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 61 VDALREVYDIFLSK----YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred HHHHHHHHHHHHhh----CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444556666666 677777777777777777777777777777776655544444
No 448
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=44.15 E-value=75 Score=21.90 Aligned_cols=77 Identities=16% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCh----hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-----c--CHHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGK----KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-----G--NYRRAFTDAEEAL 98 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-----~--~~~~A~~~~~~al 98 (119)
.+.+-+..|+..+. || ++...|++.|..+-+. +.+.+-.++|..+..- + +.++|...++++.
T Consensus 67 y~kSCyKyG~y~~~-GKgG~~~~l~~a~r~~~~aC~~------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traC 139 (248)
T KOG4014|consen 67 YPKSCYKYGMYMLA-GKGGDDASLSKAIRPMKIACDA------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRAC 139 (248)
T ss_pred CcHHHHHhhhhhhc-ccCCCccCHHHHHHHHHHHhcc------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhc
Confidence 34455556655543 11 2677888888776665 4566666677665531 2 3778888888888
Q ss_pred hhCCCCHHHHHHhhccC
Q 033440 99 KLCPTNVKVVILCSGSH 115 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~ 115 (119)
+++ +..+-|.++-.|
T Consensus 140 dl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 140 DLE--DGEACFLLSTMY 154 (248)
T ss_pred cCC--CchHHHHHHHHH
Confidence 876 345555554443
No 449
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.95 E-value=84 Score=26.41 Aligned_cols=63 Identities=21% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hCCCCH
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-SENSVLYANRAHVNLLLGNYRRAFTDAEEALK-LCPTNV 105 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-l~p~~~ 105 (119)
..-+.++++. .|.-|+.+... ... + ..-..++...|.-++..|++++|...|-+.+. ++|..+
T Consensus 339 ~kL~iL~kK~--ly~~Ai~LAk~-~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V 403 (933)
T KOG2114|consen 339 TKLDILFKKN--LYKVAINLAKS-QHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV 403 (933)
T ss_pred HHHHHHHHhh--hHHHHHHHHHh-cCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH
Confidence 3445677755 89999987554 233 3 34457788889999999999999999999888 566443
No 450
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.92 E-value=1e+02 Score=21.11 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC----CHHHHHHhhccCcC
Q 033440 50 SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT----NVKVVILCSGSHPN 117 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~a~~~~~ 117 (119)
++|...|-++-.. ..=+++.+.+.+|..|. ..+.++++..+-++|++.+. |+..+..++.++..
T Consensus 123 ~~A~~~fL~~E~~---~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 123 QEALRRFLQLEGT---PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHHHHHHcCC---CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4555555433221 22367888888877776 57899999999999997543 47777777766543
No 451
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=43.80 E-value=65 Score=26.30 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 54 DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 54 ~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+.|..+++.+..-.-+...+|..-|.+.++++++..|..-+.+++++..
T Consensus 570 ErYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkg 618 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCGIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKG 618 (1141)
T ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence 3467777665443445667788889999999999999999999999863
No 452
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=77 Score=19.45 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
.+-.|.++..+|..|.+.|+-+.|+..++.=-.+-|.+.
T Consensus 68 ~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 68 GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 456778999999999999999999999998888888654
No 453
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=42.19 E-value=1.7e+02 Score=23.12 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=35.9
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..-++.+|++..+|+++...+-.+| .+++-.+.|.+...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~--s~~~~re~yeq~~~p 71 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQE--SMDAEREMYEQLSSP 71 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhh--hHHHHHHHHHHhcCC
Confidence 455556789999999999999999988 899999999987776
No 454
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=41.85 E-value=40 Score=16.10 Aligned_cols=29 Identities=17% Similarity=-0.082 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHhhC
Q 033440 73 LYANRAHVNLLLGN---YRRAFTDAEEALKLC 101 (119)
Q Consensus 73 ~~~~~a~~~~~l~~---~~~A~~~~~~al~l~ 101 (119)
.-++.|.|+.+-.. ..+++..++..++.+
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 34666666666543 345555555554443
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.32 E-value=1.1e+02 Score=20.81 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..++++.|.|++|.+.+++... +|++.+-.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r 147 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLR 147 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHH
Confidence 3456677778888887777777 66665543
No 456
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=41.31 E-value=98 Score=20.05 Aligned_cols=68 Identities=21% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CCCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LSDS-ENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
........++..++.| +.+.|...+.-+-.-.. ..-| .......+.+..++..|+|.+|...+..+++
T Consensus 74 ~~~~ai~~a~~~l~~g--~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKG--DKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4566778899999988 99999988765432110 0012 1224456788999999999999999988874
No 457
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.12 E-value=1.8e+02 Score=23.11 Aligned_cols=63 Identities=14% Similarity=-0.063 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-----CcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-----DSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
...+..++...+-.+ +|..|..........+... ..-.+.+++-.|..+...|+.+.|...|.
T Consensus 361 ~~~~~y~~~~~~~~~--~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRG--DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 334556788888888 9999999888777653221 12357788889999999999999999998
No 458
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=40.62 E-value=69 Score=20.80 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.1
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhhCCCCH
Q 033440 75 ANRAHVNLLLG-NYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 75 ~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~ 105 (119)
..+|..+...| ++.+++.++-+||.+.|.-.
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 45688888889 99999999999999988533
No 459
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=70 Score=23.63 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.++++...+.. ++++|+..|.+.+.. ....-.+.-....+++..|...|++..
T Consensus 7 le~a~~~v~~~--~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSN--DIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhh--hHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 46777788877 999999999998865 111112233456778888888887643
No 460
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=39.30 E-value=90 Score=19.06 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=27.4
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
=++..++++..-.|..+.+.| +|++|-....++=+
T Consensus 13 I~~aG~ArS~~~eAl~~Ak~g--~f~~A~~~i~eA~~ 47 (105)
T COG1447 13 ILHAGNARSKAYEALKAAKEG--DFEEAEELIQEAND 47 (105)
T ss_pred HHHcccHhHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 345667888888888899988 99999888766654
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.13 E-value=2.6e+02 Score=26.64 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+...++.|.+.+...-+.| .++.|-...-.|.+. . .+.++..+|..+-..|+-..|+...++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~----r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAG--HLQRAQNALLNAKES----R--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhc----c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4567888999999998888 999999998888877 3 78889999999999999999999999999765
No 462
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=39.03 E-value=1.5e+02 Score=21.54 Aligned_cols=67 Identities=15% Similarity=-0.009 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.......+..+...| ..+.|+..++..+..++. ..+........+..+...|.++-|...+.++.+.
T Consensus 213 ~~~~~~eA~~l~~~~--gl~~Al~~L~~~~~~~~s-~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 213 WEELREEARALAAEG--GLEAALQRLQQRLAQARE-PRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344456678888887 899999999887654221 3345556666777888899999999999987663
No 463
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.90 E-value=75 Score=22.22 Aligned_cols=33 Identities=21% Similarity=0.126 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHH---------HhChhcHHHHHHHHHHHHhh
Q 033440 28 ESAAIELKEKGNEYV---------KKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~---------~~g~~~~~~A~~~~~~al~~ 62 (119)
+-.+..++..|..+. ..+ +...|+.++.+|+.+
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~--~l~~Al~~L~rA~~l 207 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAE--TLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcc--cHHHHHHHHHHHHHh
Confidence 335566777787774 445 889999999999999
No 464
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=38.76 E-value=1.5e+02 Score=21.52 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=37.5
Q ss_pred HhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 43 KKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 43 ~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..+ +|.+.++..++.+.. .|-..+.++..+.+..++|. .++....+.
T Consensus 111 ~~~--~~~~Ll~~~E~sl~~----~pfWLDgq~~~~qal~~lG~-~~~a~aI~~ 157 (301)
T TIGR03362 111 AQA--DWAALLQRVEQSLSL----APFWLDGQRLSAQALERLGY-AAVAQAIRD 157 (301)
T ss_pred hCC--CHHHHHHHHHHHHHh----CchhhHHHHHHHHHHHHCCC-HHHHHHHHH
Confidence 545 889999999999999 99999999999999999994 444443333
No 465
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.59 E-value=54 Score=19.86 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
...+.+++..|+.+| .+.+|++.+.+...
T Consensus 39 ~~~~~eL~~lY~~kg--~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKG--LHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccC--ccHHHHHHHHHHhc
Confidence 456788999999988 99999999988776
No 466
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.46 E-value=1.9e+02 Score=24.62 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHH------HHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCY------TRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~------~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+-..|..+-+.. +|++|+++| .++|++.+-.-|... .+--.-|.-+...|+++.|+.+|-++
T Consensus 663 lydkagdlfeki~--d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIH--DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHhhhhHHHHhh--CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 3445577777776 899999885 456666333334333 22333455566677777777766554
No 467
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.24 E-value=84 Score=24.34 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCCC
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~ 103 (119)
+..|.+|.-.+ +|.+|++.|...+-. -......+..++.|+-..+ +++...+....++.+.|.
T Consensus 276 Y~VGFayLmmr--ryadai~~F~niLly----Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 276 YQVGFAYLMMR--RYADAIRVFLNILLY----IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred eehhHHHHHHH--HHHHHHHHHHHHHHH----HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCch
Confidence 56799999999 999999999888865 3333444455556665544 356666666666667664
No 468
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=38.23 E-value=39 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH
Q 033440 49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
...|+.++.+|.. .++|..|.++|.+++.+|+.
T Consensus 334 ~~~Al~yL~kA~d------~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD------EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH------S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc------cCChhHHHHHHHHHhhhhcc
Confidence 3455555555544 36778889999999988753
No 469
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.96 E-value=1.3e+02 Score=20.54 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=42.1
Q ss_pred CCCChhhHHhHHHHHHhcHH-------HHHHHH-HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 033440 10 EPKTESEKADLDAIAALKES-------AAIELK-EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
.++.+.++..++.+.+..+. .-.... ....++.++| .|++|.+.+.+...- |+.......+..+-
T Consensus 82 ~TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g--~Fk~A~eiLkr~~~d-----~~~~~~r~kL~~II 154 (200)
T cd00280 82 LTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENG--EFKKAEEVLKRLFSD-----PESQKLRMKLLMII 154 (200)
T ss_pred cChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHhcC-----CCchhHHHHHHHHH
Confidence 34455666666666543322 111122 2345667777 999999999998774 55555544454443
Q ss_pred HHhcCHHHHHH
Q 033440 82 LLLGNYRRAFT 92 (119)
Q Consensus 82 ~~l~~~~~A~~ 92 (119)
...+.+..-++
T Consensus 155 ~~Kd~~h~~lq 165 (200)
T cd00280 155 REKDPAHPVLQ 165 (200)
T ss_pred HccccccHHHH
Confidence 33333443333
No 470
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.64 E-value=55 Score=25.47 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-------CCcchHHHHHHHHHHHHHhcCH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-------SDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
+..+.+.|..++... .|..|+.++-.|=+.... .-.+.+.+-.....||+.+++.
T Consensus 163 glg~hekaRa~m~re--~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkni 224 (568)
T KOG2561|consen 163 GLGLHEKARAAMERE--MYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNI 224 (568)
T ss_pred HHhHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccc
Confidence 566788899999977 999999876555433110 0345666666778899988753
No 471
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=37.47 E-value=79 Score=23.03 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhccCC-C-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQNVLS-D-SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
....|.+..++|+.+.... + .....+.+.++..|+.+++|+-|..++.+|+.+
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~ 108 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNL 108 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4577888999998774332 1 122345667889999999999999999999886
No 472
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.25 E-value=1.4e+02 Score=21.06 Aligned_cols=27 Identities=22% Similarity=-0.015 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
-.++.+|...|..+.+-|++.+|..++
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 356677777777777777777776655
No 473
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=36.99 E-value=1.7e+02 Score=24.61 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
.-.++.+.|..+.... .|++|.++|.+.
T Consensus 795 ~e~A~r~ig~~fa~~~--~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMM--EWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhc
Confidence 3456777777777766 788887776654
No 474
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.83 E-value=64 Score=22.39 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..+|......|+|++++....+++..+|+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 34566666777777777777777777664
No 475
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=36.08 E-value=29 Score=22.35 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 033440 79 HVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~ 96 (119)
..|+.+|+|++|++.|+.
T Consensus 111 k~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHhcCcHHHHHHHccC
Confidence 467888999999998877
No 476
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.80 E-value=1.7e+02 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+++..|-.+|..-+..|+++-|..++.++-
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3567789999999999999999999888863
No 477
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.59 E-value=2e+02 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
+|++|+.+|+.+++.
T Consensus 25 nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 25 NYEEALRLYQNALEY 39 (439)
T ss_pred chHHHHHHHHHHHHH
Confidence 666666666666654
No 478
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=34.57 E-value=90 Score=17.66 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
-+.+..+..-|..++.+| |+..|+.++.=+
T Consensus 32 ~~mA~~Y~~D~~~fl~~g--D~v~Ala~~sYa 61 (75)
T PF04010_consen 32 LEMAESYLEDGKYFLEKG--DYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 446888888899999988 999998876544
No 479
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.51 E-value=1.3e+02 Score=19.45 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+|..++..|+++++..++-.|+.+.|.-.+.+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 4578899999999999999999999987655433
No 480
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=34.06 E-value=2.5e+02 Score=22.66 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred HHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.|...+ |.+-|.+.|+-.+.. .++.+..-.....-+..+++=..+...+++++..
T Consensus 410 Ey~csk--D~~~AfrIFeLGLkk----f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 410 EYYCSK--DKETAFRIFELGLKK----FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcC--ChhHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 455555 899999999999988 8888877777777777888888888888888775
No 481
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.00 E-value=1.4e+02 Score=19.58 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHhChhcHHHHHHHHHHHHhhccCCCcch---HH------------HHHHHHHHHHHhc----CHHHHHHHHHHHHhh
Q 033440 40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SV------------LYANRAHVNLLLG----NYRRAFTDAEEALKL 100 (119)
Q Consensus 40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~------------~~~~~a~~~~~l~----~~~~A~~~~~~al~l 100 (119)
.+...| +|+.++..|.++-.+ .... .. +-.-+...+.++. ..++.....+..+++
T Consensus 95 ~~i~~~--dy~~~i~dY~kak~l----~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L 168 (182)
T PF15469_consen 95 ECIKKG--DYDQAINDYKKAKSL----FEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLEL 168 (182)
T ss_pred HHHHcC--cHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 345666 999999999998877 2221 11 1111122233332 456666677777778
Q ss_pred CCCCHHHHHH
Q 033440 101 CPTNVKVVIL 110 (119)
Q Consensus 101 ~p~~~~a~~~ 110 (119)
+|+.-.+|..
T Consensus 169 ~~~~dPi~~~ 178 (182)
T PF15469_consen 169 NVEEDPIWYW 178 (182)
T ss_pred CCCCCHHHHH
Confidence 7755444443
No 482
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=33.54 E-value=79 Score=26.84 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhCC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-----NYRRAFTDAEEALKLCP 102 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-----~~~~A~~~~~~al~l~p 102 (119)
|.-+-.|...+.+|.+.| +|++-+++|.-|+.. .|..|.+-.-+-++-+++- +-..|....--++.+-|
T Consensus 549 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLG--EYNEEIKSLLLALKR----YSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred CCCchHHHhHHHHHHHhh--hHHHHHHHHHHHHHh----cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445566777888889988 999999999999998 7777765555544443332 23344444444555555
Q ss_pred CC
Q 033440 103 TN 104 (119)
Q Consensus 103 ~~ 104 (119)
..
T Consensus 623 ~~ 624 (932)
T PRK13184 623 EK 624 (932)
T ss_pred cc
Confidence 43
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.51 E-value=2.1e+02 Score=21.54 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
....+++..+|.-|.+.| |-+.|++.+++..+......- +-.-....+|..|....-..+-++-.+..++-.
T Consensus 101 ~ev~ea~~~kaeYycqig--Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIG--DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 345778899999999999 999999987776654111121 122233445555555444555555555555543
No 484
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=33.04 E-value=1.9e+02 Score=20.87 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=33.6
Q ss_pred CcchHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 67 DSENSVLYANRAHVNLLL----------------------GNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l----------------------~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.|.+..++..+|.++... .-.+.|+.++.+++.++|..+.++..+
T Consensus 73 ~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m 139 (277)
T PF13226_consen 73 CPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGM 139 (277)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 677777777777766541 235678889999999999988777654
No 485
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=32.98 E-value=1.4e+02 Score=19.22 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
+.+.|...|.++++..|++..+|..+-.
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 4578889999999999999998877644
No 486
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=31.43 E-value=78 Score=15.95 Aligned_cols=31 Identities=23% Similarity=0.048 Sum_probs=25.2
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 56 YTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 56 ~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
+-.+|-. .|++.+.....|..+...|+...|
T Consensus 5 ll~AI~~----~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 5 LLRAILA----HPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHh----CCCCcchHHHHHHHHHHcCCHHHH
Confidence 4566777 899999999999999999988654
No 487
>TIGR02863 spore_sspJ small, acid-soluble spore protein, SspJ family. RL J Bacteriol. 1998 Dec;180(24):6704-12.
Probab=31.25 E-value=65 Score=16.23 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=12.9
Q ss_pred CCcccCCCCCCCChhhHHhHHHH
Q 033440 1 MALWMDAESEPKTESEKADLDAI 23 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (119)
|++|+.+.....++++...++.+
T Consensus 1 M~ifF~kdk~~~seKd~n~v~ga 23 (47)
T TIGR02863 1 MGIFFNKDKGKKSEKDKNAIQGA 23 (47)
T ss_pred CcchhhcccccchhhhHHHHHHH
Confidence 66666666555555555444443
No 488
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=1.8e+02 Score=24.92 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+....++...-+.+|+.+ ++..|-...++.+++ .|..+.+-..+-.....-.++.+|.+
T Consensus 1081 ~H~ilalrtA~n~ffK~k--N~ktAs~fa~rLlel----~~~~~~A~q~rki~~a~eknp~Da~~ 1139 (1202)
T KOG0292|consen 1081 MHRILALRTAMNVFFKLK--NLKTAAEFARRLLEL----APSPPVAEQARKIKQAAEKNPTDAYE 1139 (1202)
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHhhcCcccccc
Confidence 445667778889999988 999999999999999 77666654444333333334444433
No 489
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.16 E-value=1.4e+02 Score=18.52 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=8.8
Q ss_pred HHHHHHHhcCHHHHHHHHH
Q 033440 77 RAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~ 95 (119)
.+.|--++|--.++..-+.
T Consensus 75 ~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 75 AALCAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHH
Confidence 3444445565555554443
No 490
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=30.09 E-value=1.2e+02 Score=17.81 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+......+...+..| +|..|..+...+...
T Consensus 44 ~A~~~L~~A~~a~~~~--~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 44 EAREKLQRAKAALDDG--DYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4555667788888888 999888887777665
No 491
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.82 E-value=2e+02 Score=20.22 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHH-----------Hhh-ccCCCcchHHHHHHHHHH-HHHhcCHHHHHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRA-----------INQ-NVLSDSENSVLYANRAHV-NLLLGNYRRAFTDAE 95 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a-----------l~~-~~~~~~~~~~~~~~~a~~-~~~l~~~~~A~~~~~ 95 (119)
.++..+...|..+++.| ++.+|..++-.. +.. .....|....++..|+.. |+.+++...|...+.
T Consensus 88 Gdp~LH~~~a~~~~~e~--~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEG--NYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp --HHHHHHHHHHHHHTT---HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhc--cHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 46777888899999988 899888764211 110 011257777888888875 556799999988665
Q ss_pred HHHhh
Q 033440 96 EALKL 100 (119)
Q Consensus 96 ~al~l 100 (119)
.-++.
T Consensus 166 ~f~~~ 170 (260)
T PF04190_consen 166 TFTSK 170 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 492
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=29.59 E-value=2.7e+02 Score=22.13 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+...| |+..|-..++-.+.. .|+.+..-...-.-+..+++-..|...+++++
T Consensus 442 ~~~~~--d~~ta~~ifelGl~~----f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 442 YYATG--DRATAYNIFELGLLK----FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHhcC--CcchHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 44444 666777777766666 56555544444444555666665655555443
No 493
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.54 E-value=3.2e+02 Score=23.30 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhCCCC
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY--RRAFTDAEEALKLCPTN 104 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~A~~~~~~al~l~p~~ 104 (119)
..-+..++..|..+| ++++|+..++....-....++.-...+-..-.-+.+++.. +-.+++..=++..+|..
T Consensus 504 ~~~y~~Li~LY~~kg--~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~ 577 (877)
T KOG2063|consen 504 SKKYRELIELYATKG--MHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA 577 (877)
T ss_pred cccHHHHHHHHHhcc--chHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh
Confidence 445778888899888 9999999999988741111333333333333333345544 55566555566666654
No 494
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=1.4e+02 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
++...|..++.-++|..|.+.|.+.
T Consensus 391 Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 391 VLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 4444555555555565555555443
No 495
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.96 E-value=50 Score=31.97 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcCC
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQ 118 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~~ 118 (119)
...+..+.-+|..+.++|+.++|-..|..|+.++-.-+++|..=|.-+.++
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~ 2859 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR 2859 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999999988899998777655443
No 496
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.89 E-value=1.9e+02 Score=21.27 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=38.6
Q ss_pred CChhhHHhHHHHHHhcHHHHH----HHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 12 KTESEKADLDAIAALKESAAI----ELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.++.++.-++.+..+.+...+ ++.+...+.|+.+ +|.+-++.|.+.+..
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~--~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG--NYKEMMERYKQLLTY 94 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHH
Confidence 355677778888887766554 5677788999999 999999999998865
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=26.66 E-value=2e+02 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.078 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
...+.++..++.-+..-|++++|-.+|-++++++.-|
T Consensus 992 ~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 3566778888888888899999999999999987533
No 498
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.53 E-value=91 Score=25.98 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHH---HhhCCCC
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEA---LKLCPTN 104 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a---l~l~p~~ 104 (119)
|+...+-.-.+.+|+.+|+|++|+.+.-.+ +..++++
T Consensus 56 ~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S 95 (929)
T KOG2062|consen 56 PERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENS 95 (929)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCcc
Confidence 444455455778888889999988877665 3444443
No 499
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=25.93 E-value=1e+02 Score=17.69 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhh
Q 033440 80 VNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l 100 (119)
-....|+++.|.+.-+++...
T Consensus 46 ~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 46 SRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred HHHHCCCHHHHHHHHHHhHHH
Confidence 344456666666666655443
No 500
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=25.83 E-value=1.8e+02 Score=18.44 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.|+...... .+.-....|+|-+|+..++..+..+
T Consensus 87 ~p~~~~~l~-~~~~~v~~g~~Y~ALK~~R~Li~~E 120 (131)
T PRK12791 87 VPSAWPIIE-AINNHILNGDLYKALKELRKLIARE 120 (131)
T ss_pred hHHHHHHHH-HHHHHHhCCCHHHHHHHHHHhHHHH
Confidence 355433333 3344667888888888888877654
Done!