Query 033440
Match_columns 119
No_of_seqs 122 out of 1820
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1.2E-20 4E-25 117.3 9.8 88 23-116 5-92 (126)
2 4gco_A Protein STI-1; structur 99.8 1E-18 3.4E-23 108.5 11.7 96 14-115 30-125 (126)
3 3gyz_A Chaperone protein IPGC; 99.8 5.8E-19 2E-23 113.2 7.3 92 20-117 25-116 (151)
4 4ga2_A E3 SUMO-protein ligase 99.8 2.2E-18 7.6E-23 109.6 8.9 98 13-116 13-110 (150)
5 3urz_A Uncharacterized protein 99.7 7.1E-17 2.4E-21 107.3 12.6 98 13-116 20-133 (208)
6 4gcn_A Protein STI-1; structur 99.7 1.9E-17 6.6E-22 102.6 8.3 84 27-116 4-94 (127)
7 2vgx_A Chaperone SYCD; alterna 99.7 4.4E-17 1.5E-21 103.5 9.8 94 18-117 8-101 (148)
8 3upv_A Heat shock protein STI1 99.7 6.6E-17 2.2E-21 99.0 9.7 94 15-114 22-121 (126)
9 4ga2_A E3 SUMO-protein ligase 99.7 9.4E-17 3.2E-21 102.0 8.8 98 13-116 47-145 (150)
10 2xcb_A PCRH, regulatory protei 99.7 8.1E-17 2.8E-21 101.0 8.0 92 19-116 6-97 (142)
11 3gyz_A Chaperone protein IPGC; 99.7 3.4E-16 1.2E-20 100.2 9.7 87 13-105 52-138 (151)
12 2hr2_A Hypothetical protein; a 99.7 2.7E-16 9.3E-21 101.6 9.1 81 30-116 10-113 (159)
13 3rkv_A Putative peptidylprolyl 99.7 3.3E-16 1.1E-20 99.9 8.0 73 27-105 59-131 (162)
14 3sz7_A HSC70 cochaperone (SGT) 99.7 9.7E-16 3.3E-20 97.9 9.8 94 14-113 28-121 (164)
15 3sz7_A HSC70 cochaperone (SGT) 99.7 7.4E-16 2.5E-20 98.4 9.2 85 27-117 7-91 (164)
16 3upv_A Heat shock protein STI1 99.7 1.5E-15 5.2E-20 92.9 10.1 84 28-117 1-84 (126)
17 2pl2_A Hypothetical conserved 99.6 2.6E-15 9E-20 100.3 11.1 98 13-117 100-197 (217)
18 2pl2_A Hypothetical conserved 99.6 8E-16 2.7E-20 102.8 8.5 97 14-116 22-129 (217)
19 4gyw_A UDP-N-acetylglucosamine 99.6 1E-15 3.5E-20 118.6 10.1 95 15-115 27-121 (723)
20 2l6j_A TPR repeat-containing p 99.6 3E-15 1E-19 88.9 10.0 81 30-116 3-89 (111)
21 2h6f_A Protein farnesyltransfe 99.6 5.7E-16 2E-20 112.3 7.4 97 13-115 113-210 (382)
22 3rkv_A Putative peptidylprolyl 99.6 7E-15 2.4E-19 93.7 11.7 51 67-117 59-109 (162)
23 2h6f_A Protein farnesyltransfe 99.6 1.4E-15 4.9E-20 110.2 9.3 99 13-117 148-246 (382)
24 3k9i_A BH0479 protein; putativ 99.6 5.8E-15 2E-19 89.6 10.7 91 13-109 6-99 (117)
25 4gyw_A UDP-N-acetylglucosamine 99.6 2E-15 6.9E-20 117.0 10.6 98 13-116 59-156 (723)
26 2vgx_A Chaperone SYCD; alterna 99.6 3E-15 1E-19 94.9 9.4 89 13-107 37-125 (148)
27 1zu2_A Mitochondrial import re 99.6 2.8E-15 9.4E-20 96.8 9.2 91 15-111 20-131 (158)
28 2xcb_A PCRH, regulatory protei 99.6 2.5E-15 8.4E-20 94.2 8.6 92 13-110 34-125 (142)
29 3vtx_A MAMA; tetratricopeptide 99.6 2.1E-15 7.3E-20 97.3 8.3 93 14-114 90-182 (184)
30 1hxi_A PEX5, peroxisome target 99.6 3.5E-15 1.2E-19 91.7 8.6 85 15-105 35-119 (121)
31 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-15 7E-20 107.2 7.9 93 18-116 134-241 (336)
32 3q49_B STIP1 homology and U bo 99.6 4.3E-15 1.5E-19 91.5 8.2 83 28-116 6-88 (137)
33 1elw_A TPR1-domain of HOP; HOP 99.6 3E-14 1E-18 84.7 11.4 97 13-115 20-116 (118)
34 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.9E-15 6.4E-20 111.4 7.4 95 17-117 254-363 (457)
35 1na3_A Designed protein CTPR2; 99.6 2.1E-14 7.1E-19 82.5 10.2 82 29-116 7-88 (91)
36 4i17_A Hypothetical protein; T 99.6 5.9E-15 2E-19 98.3 8.1 96 14-115 59-163 (228)
37 2vyi_A SGTA protein; chaperone 99.6 3.9E-14 1.3E-18 85.4 11.0 97 14-116 29-125 (131)
38 2lni_A Stress-induced-phosphop 99.6 5.2E-15 1.8E-19 90.0 7.1 99 13-117 32-130 (133)
39 1hxi_A PEX5, peroxisome target 99.6 2.7E-14 9.3E-19 87.7 10.0 78 33-116 19-96 (121)
40 1p5q_A FKBP52, FK506-binding p 99.6 2.6E-14 8.9E-19 101.5 11.0 97 14-116 164-275 (336)
41 3vtx_A MAMA; tetratricopeptide 99.6 3.6E-14 1.2E-18 91.5 10.1 102 14-117 22-153 (184)
42 4i17_A Hypothetical protein; T 99.6 4.2E-14 1.4E-18 94.1 10.3 97 14-116 24-128 (228)
43 3uq3_A Heat shock protein STI1 99.5 1.3E-13 4.4E-18 92.0 12.2 96 16-117 124-219 (258)
44 2e2e_A Formate-dependent nitri 99.5 2.9E-14 1E-18 91.6 8.3 99 13-117 26-127 (177)
45 1na0_A Designed protein CTPR3; 99.5 1.8E-13 6.1E-18 81.8 11.1 97 14-116 26-122 (125)
46 2kck_A TPR repeat; tetratricop 99.5 1.3E-14 4.6E-19 85.6 5.8 84 28-117 3-88 (112)
47 2dba_A Smooth muscle cell asso 99.5 1.6E-13 5.6E-18 84.8 10.9 95 15-115 46-143 (148)
48 4gcn_A Protein STI-1; structur 99.5 8.5E-14 2.9E-18 86.0 9.5 90 13-109 24-120 (127)
49 2fbn_A 70 kDa peptidylprolyl i 99.5 3.6E-14 1.2E-18 93.0 8.2 86 25-116 32-133 (198)
50 2fbn_A 70 kDa peptidylprolyl i 99.5 1.2E-13 4.2E-18 90.5 10.4 96 14-115 55-166 (198)
51 1a17_A Serine/threonine protei 99.5 2.6E-13 8.7E-18 85.4 11.5 94 14-113 30-123 (166)
52 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.9E-14 2E-18 103.4 9.4 97 14-116 285-396 (457)
53 2xev_A YBGF; tetratricopeptide 99.5 2.3E-13 8E-18 82.7 10.6 94 13-112 18-117 (129)
54 2c2l_A CHIP, carboxy terminus 99.5 3.7E-14 1.3E-18 98.3 7.4 81 30-116 3-83 (281)
55 2vyi_A SGTA protein; chaperone 99.5 2.5E-13 8.6E-18 81.8 10.2 86 25-116 6-91 (131)
56 2hr2_A Hypothetical protein; a 99.5 1.2E-13 4.2E-18 89.2 9.1 90 14-105 28-136 (159)
57 3q49_B STIP1 homology and U bo 99.5 1.3E-13 4.3E-18 84.8 8.9 93 14-112 26-123 (137)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.2E-18 91.7 10.9 99 13-117 21-123 (275)
59 1ihg_A Cyclophilin 40; ppiase 99.5 4.4E-13 1.5E-17 96.6 12.7 96 14-115 240-351 (370)
60 1elw_A TPR1-domain of HOP; HOP 99.5 3.5E-13 1.2E-17 79.9 10.1 81 30-116 3-83 (118)
61 3ma5_A Tetratricopeptide repea 99.5 3.9E-14 1.3E-18 84.1 5.4 72 26-103 2-73 (100)
62 2lni_A Stress-induced-phosphop 99.5 9.5E-14 3.3E-18 84.3 7.3 85 27-117 12-96 (133)
63 3urz_A Uncharacterized protein 99.5 2.6E-13 8.9E-18 90.0 9.8 81 30-116 3-99 (208)
64 2pzi_A Probable serine/threoni 99.5 3.6E-14 1.2E-18 109.0 5.9 96 14-116 450-545 (681)
65 4abn_A Tetratricopeptide repea 99.5 3.4E-13 1.2E-17 99.7 10.6 97 14-116 196-303 (474)
66 2kat_A Uncharacterized protein 99.5 2.2E-13 7.7E-18 82.0 8.0 83 15-103 3-85 (115)
67 1a17_A Serine/threonine protei 99.5 6.9E-13 2.4E-17 83.4 10.5 83 29-117 11-93 (166)
68 2if4_A ATFKBP42; FKBP-like, al 99.5 1E-13 3.5E-18 98.6 7.3 85 26-116 174-275 (338)
69 2pzi_A Probable serine/threoni 99.5 9.3E-14 3.2E-18 106.8 7.5 97 14-116 408-512 (681)
70 4eqf_A PEX5-related protein; a 99.5 4.9E-13 1.7E-17 94.2 10.6 98 13-116 193-292 (365)
71 2dba_A Smooth muscle cell asso 99.5 2.6E-13 8.8E-18 83.9 8.1 85 26-116 23-110 (148)
72 1ihg_A Cyclophilin 40; ppiase 99.5 3.6E-13 1.2E-17 97.1 9.7 88 28-117 220-319 (370)
73 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 4.2E-17 78.8 10.5 98 14-117 18-115 (136)
74 1wao_1 Serine/threonine protei 99.5 5.4E-13 1.9E-17 98.9 10.4 96 13-114 22-117 (477)
75 3as5_A MAMA; tetratricopeptide 99.5 1.1E-12 3.9E-17 83.1 10.6 97 14-116 59-155 (186)
76 1elr_A TPR2A-domain of HOP; HO 99.4 3.1E-13 1E-17 81.6 7.5 82 29-116 2-90 (131)
77 2vsy_A XCC0866; transferase, g 99.4 3E-13 1E-17 101.3 8.8 94 16-115 8-101 (568)
78 2xev_A YBGF; tetratricopeptide 99.4 4.4E-13 1.5E-17 81.5 8.0 80 32-117 3-88 (129)
79 4abn_A Tetratricopeptide repea 99.4 3.7E-13 1.3E-17 99.4 9.0 97 14-117 120-225 (474)
80 1elr_A TPR2A-domain of HOP; HO 99.4 1.7E-12 5.9E-17 78.2 10.4 96 13-115 20-122 (131)
81 2kc7_A BFR218_protein; tetratr 99.4 1.1E-12 3.9E-17 76.7 9.3 68 35-108 4-72 (99)
82 1fch_A Peroxisomal targeting s 99.4 1.5E-12 5E-17 91.3 11.1 97 14-116 198-296 (368)
83 1w3b_A UDP-N-acetylglucosamine 99.4 4.6E-13 1.6E-17 95.2 8.5 95 15-115 289-383 (388)
84 2if4_A ATFKBP42; FKBP-like, al 99.4 4E-13 1.4E-17 95.5 8.1 97 13-115 195-308 (338)
85 2vsy_A XCC0866; transferase, g 99.4 7.9E-13 2.7E-17 99.0 10.0 99 13-117 39-137 (568)
86 1w3b_A UDP-N-acetylglucosamine 99.4 1.5E-12 5.2E-17 92.4 10.9 96 14-115 220-315 (388)
87 3mkr_A Coatomer subunit epsilo 99.4 1.8E-12 6.2E-17 90.3 10.6 97 13-115 146-244 (291)
88 3qky_A Outer membrane assembly 99.4 5.7E-13 2E-17 90.5 7.5 91 15-108 33-134 (261)
89 2y4t_A DNAJ homolog subfamily 99.4 1.3E-12 4.4E-17 94.0 9.7 98 13-116 8-105 (450)
90 3uq3_A Heat shock protein STI1 99.4 2.8E-12 9.7E-17 85.4 10.6 97 13-115 155-257 (258)
91 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1E-12 3.4E-17 86.2 8.2 94 15-117 24-133 (213)
92 1na0_A Designed protein CTPR3; 99.4 2.6E-12 8.9E-17 76.7 9.4 80 31-116 9-88 (125)
93 2q7f_A YRRB protein; TPR, prot 99.4 3.8E-12 1.3E-16 84.4 10.8 92 17-114 77-168 (243)
94 1fch_A Peroxisomal targeting s 99.4 1.8E-12 6.1E-17 90.9 9.6 98 13-116 233-341 (368)
95 2kck_A TPR repeat; tetratricop 99.4 1.7E-12 5.7E-17 76.4 8.1 86 13-104 22-110 (112)
96 3cv0_A Peroxisome targeting si 99.4 3.6E-12 1.2E-16 87.6 10.6 98 14-117 155-252 (327)
97 2q7f_A YRRB protein; TPR, prot 99.4 2.4E-12 8.1E-17 85.4 9.3 94 16-115 110-203 (243)
98 1xnf_A Lipoprotein NLPI; TPR, 99.4 5E-12 1.7E-16 85.2 10.8 94 13-112 59-152 (275)
99 2ho1_A Type 4 fimbrial biogene 99.4 4.5E-12 1.5E-16 84.8 10.3 94 16-115 90-185 (252)
100 2vq2_A PILW, putative fimbrial 99.4 6.9E-12 2.3E-16 82.0 10.8 95 15-115 60-157 (225)
101 3as5_A MAMA; tetratricopeptide 99.4 1.2E-12 4.3E-17 83.0 6.9 96 15-116 26-121 (186)
102 3u4t_A TPR repeat-containing p 99.4 2.3E-12 7.9E-17 87.0 8.0 99 14-115 20-118 (272)
103 3hym_B Cell division cycle pro 99.4 3.4E-12 1.1E-16 87.9 9.0 97 14-116 108-204 (330)
104 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6.4E-12 2.2E-16 82.3 9.8 97 13-111 53-161 (213)
105 2ho1_A Type 4 fimbrial biogene 99.4 4.9E-12 1.7E-16 84.6 9.3 95 15-115 55-151 (252)
106 3cv0_A Peroxisome targeting si 99.4 4.1E-12 1.4E-16 87.3 9.1 98 13-116 188-297 (327)
107 4eqf_A PEX5-related protein; a 99.4 2.1E-12 7.1E-17 91.0 7.7 92 14-111 82-173 (365)
108 2vq2_A PILW, putative fimbrial 99.3 6.4E-12 2.2E-16 82.1 9.2 97 14-116 25-124 (225)
109 3hym_B Cell division cycle pro 99.3 3.1E-12 1.1E-16 88.0 8.0 96 14-115 210-314 (330)
110 3qky_A Outer membrane assembly 99.3 7.3E-12 2.5E-16 85.0 9.7 97 14-116 69-196 (261)
111 2c2l_A CHIP, carboxy terminus 99.3 2.6E-12 9E-17 89.0 7.6 86 13-104 20-105 (281)
112 2e2e_A Formate-dependent nitri 99.3 5.9E-12 2E-16 80.7 8.7 90 13-108 60-152 (177)
113 3u4t_A TPR repeat-containing p 99.3 4.8E-12 1.7E-16 85.4 8.6 95 15-115 92-186 (272)
114 3fp2_A TPR repeat-containing p 99.3 3.7E-12 1.3E-16 93.3 8.6 84 27-116 21-104 (537)
115 2gw1_A Mitochondrial precursor 99.3 9.9E-12 3.4E-16 90.3 10.3 82 29-117 4-85 (514)
116 2xpi_A Anaphase-promoting comp 99.3 2.7E-11 9.2E-16 90.0 12.3 99 13-117 491-596 (597)
117 2v5f_A Prolyl 4-hydroxylase su 99.3 4.2E-11 1.4E-15 71.7 10.7 80 31-112 5-87 (104)
118 3fp2_A TPR repeat-containing p 99.3 1.3E-11 4.6E-16 90.3 9.8 98 13-116 292-389 (537)
119 3qou_A Protein YBBN; thioredox 99.3 9.3E-12 3.2E-16 86.3 8.4 100 14-115 134-265 (287)
120 3mkr_A Coatomer subunit epsilo 99.3 2E-11 6.7E-16 85.1 10.0 90 13-108 182-272 (291)
121 3ieg_A DNAJ homolog subfamily 99.3 2.3E-11 8E-16 84.2 10.2 94 13-112 19-115 (359)
122 1wao_1 Serine/threonine protei 99.3 7.9E-13 2.7E-17 98.0 2.9 83 28-116 3-85 (477)
123 3ieg_A DNAJ homolog subfamily 99.3 4.5E-11 1.5E-15 82.8 11.3 97 14-116 88-199 (359)
124 2r5s_A Uncharacterized protein 99.3 2.2E-11 7.6E-16 78.4 8.8 101 14-116 23-155 (176)
125 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.7E-11 9.4E-16 80.9 9.2 80 31-116 4-89 (225)
126 3k9i_A BH0479 protein; putativ 99.3 4.3E-12 1.5E-16 76.8 4.8 68 48-116 5-72 (117)
127 1qqe_A Vesicular transport pro 99.3 3.5E-11 1.2E-15 83.4 9.6 98 13-116 93-210 (292)
128 2y4t_A DNAJ homolog subfamily 99.3 5.3E-11 1.8E-15 85.5 10.7 94 13-112 42-138 (450)
129 1dce_A Protein (RAB geranylger 99.3 4.5E-11 1.5E-15 90.5 10.7 99 11-115 43-153 (567)
130 1zu2_A Mitochondrial import re 99.3 9.9E-12 3.4E-16 80.1 6.1 66 48-117 17-92 (158)
131 2fo7_A Synthetic consensus TPR 99.3 7.4E-11 2.5E-15 70.8 9.6 80 32-117 2-81 (136)
132 2xpi_A Anaphase-promoting comp 99.2 7E-11 2.4E-15 87.7 10.2 97 14-116 390-486 (597)
133 3edt_B KLC 2, kinesin light ch 99.2 7.6E-11 2.6E-15 79.2 9.2 103 13-117 17-139 (283)
134 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.3E-11 1.8E-15 79.5 8.0 99 13-117 57-196 (225)
135 2ond_A Cleavage stimulation fa 99.2 1.1E-10 3.7E-15 81.3 9.3 96 14-115 33-144 (308)
136 3edt_B KLC 2, kinesin light ch 99.2 6.5E-11 2.2E-15 79.5 7.8 101 14-116 60-180 (283)
137 2ond_A Cleavage stimulation fa 99.2 1.8E-10 6.1E-15 80.2 9.6 95 14-114 81-177 (308)
138 2gw1_A Mitochondrial precursor 99.2 4.7E-11 1.6E-15 86.7 6.6 96 14-115 355-459 (514)
139 3qou_A Protein YBBN; thioredox 99.2 1.4E-10 4.9E-15 80.3 8.6 90 21-116 107-230 (287)
140 3dra_A Protein farnesyltransfe 99.1 3.7E-10 1.3E-14 79.8 10.3 100 12-115 48-154 (306)
141 1qqe_A Vesicular transport pro 99.1 2.1E-10 7.2E-15 79.5 8.8 89 13-107 134-235 (292)
142 3dra_A Protein farnesyltransfe 99.1 2.3E-10 7.8E-15 80.8 8.8 99 12-116 84-191 (306)
143 1dce_A Protein (RAB geranylger 99.1 1.5E-10 5.2E-15 87.6 8.3 100 13-116 89-189 (567)
144 3dss_A Geranylgeranyl transfer 99.1 6.4E-10 2.2E-14 79.3 11.0 98 14-115 91-189 (331)
145 4g1t_A Interferon-induced prot 99.1 3.5E-10 1.2E-14 81.9 9.5 100 14-115 68-182 (472)
146 3dss_A Geranylgeranyl transfer 99.1 6.3E-10 2.2E-14 79.4 10.4 100 10-115 43-154 (331)
147 4g1t_A Interferon-induced prot 99.1 2.8E-10 9.7E-15 82.4 8.8 98 15-116 193-292 (472)
148 3ulq_A Response regulator aspa 99.1 5.1E-10 1.7E-14 79.6 9.6 101 14-116 160-275 (383)
149 3q7a_A Farnesyltransferase alp 99.1 6.3E-10 2.2E-14 79.9 10.1 100 11-115 68-169 (349)
150 2r5s_A Uncharacterized protein 99.1 4.3E-11 1.5E-15 77.0 3.5 79 27-112 2-80 (176)
151 1pc2_A Mitochondria fission pr 99.1 8.5E-10 2.9E-14 70.5 9.3 83 25-111 26-111 (152)
152 3u3w_A Transcriptional activat 99.1 1E-10 3.5E-15 80.9 5.1 102 14-117 132-248 (293)
153 2kat_A Uncharacterized protein 99.1 5.7E-10 1.9E-14 66.8 7.6 62 51-116 3-64 (115)
154 3nf1_A KLC 1, kinesin light ch 99.0 1.2E-09 4.1E-14 74.4 8.9 101 14-116 86-206 (311)
155 3bee_A Putative YFRE protein; 99.0 9.1E-10 3.1E-14 64.9 7.1 74 27-104 2-76 (93)
156 2qfc_A PLCR protein; TPR, HTH, 99.0 5.1E-10 1.7E-14 77.3 6.7 99 15-116 133-247 (293)
157 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-09 5.2E-14 72.0 8.4 96 12-116 68-173 (212)
158 3nf1_A KLC 1, kinesin light ch 99.0 3.3E-10 1.1E-14 77.2 5.2 95 21-117 17-123 (311)
159 2l6j_A TPR repeat-containing p 99.0 8.3E-11 2.8E-15 69.4 1.9 78 13-96 20-103 (111)
160 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-09 5.4E-14 75.5 8.2 100 14-116 93-206 (307)
161 3q15_A PSP28, response regulat 99.0 3.4E-09 1.2E-13 75.4 9.3 100 15-116 159-272 (378)
162 3ulq_A Response regulator aspa 99.0 9.1E-09 3.1E-13 73.1 11.0 101 14-116 201-314 (383)
163 2kc7_A BFR218_protein; tetratr 99.0 5.7E-10 1.9E-14 64.9 3.9 79 13-105 16-95 (99)
164 1ouv_A Conserved hypothetical 99.0 8.5E-09 2.9E-13 69.9 10.4 76 30-115 37-120 (273)
165 3sf4_A G-protein-signaling mod 98.9 3.2E-09 1.1E-13 74.8 8.1 88 27-116 183-278 (406)
166 3ro3_A PINS homolog, G-protein 98.9 7.9E-09 2.7E-13 63.6 9.0 101 14-116 26-140 (164)
167 4a1s_A PINS, partner of inscut 98.9 3.4E-09 1.2E-13 75.3 7.6 84 27-116 44-137 (411)
168 4a1s_A PINS, partner of inscut 98.9 2.4E-09 8.2E-14 76.1 6.8 101 14-116 65-177 (411)
169 3q7a_A Farnesyltransferase alp 98.9 3.3E-09 1.1E-13 76.2 7.4 100 13-117 105-213 (349)
170 1ouv_A Conserved hypothetical 98.9 2.4E-08 8.3E-13 67.6 11.1 90 14-115 59-156 (273)
171 2ifu_A Gamma-SNAP; membrane fu 98.9 1.8E-08 6E-13 70.2 10.0 90 13-105 131-228 (307)
172 3ro3_A PINS homolog, G-protein 98.9 6.7E-09 2.3E-13 63.9 7.1 87 28-116 6-100 (164)
173 3rjv_A Putative SEL1 repeat pr 98.9 7.7E-09 2.6E-13 68.5 7.7 89 16-117 5-97 (212)
174 3gw4_A Uncharacterized protein 98.9 9.4E-09 3.2E-13 66.3 7.9 86 29-116 24-118 (203)
175 3q15_A PSP28, response regulat 98.9 4.7E-08 1.6E-12 69.5 12.2 87 14-102 199-292 (378)
176 3ma5_A Tetratricopeptide repea 98.9 2.7E-09 9.2E-14 62.8 4.7 51 67-117 3-53 (100)
177 3sf4_A G-protein-signaling mod 98.9 8.7E-09 3E-13 72.5 7.7 100 15-116 205-318 (406)
178 1na3_A Designed protein CTPR2; 98.9 1.7E-08 5.8E-13 57.2 7.6 67 13-85 25-91 (91)
179 3qww_A SET and MYND domain-con 98.8 5E-08 1.7E-12 71.8 11.9 79 27-107 336-423 (433)
180 3ro2_A PINS homolog, G-protein 98.8 1.1E-08 3.8E-13 69.7 8.0 88 27-116 179-274 (338)
181 2ooe_A Cleavage stimulation fa 98.8 1.8E-08 6.2E-13 74.7 9.6 94 16-115 257-366 (530)
182 3ro2_A PINS homolog, G-protein 98.8 1.5E-08 5E-13 69.2 7.6 102 13-116 21-134 (338)
183 3gw4_A Uncharacterized protein 98.8 2.1E-08 7E-13 64.6 7.9 100 14-115 43-157 (203)
184 3u3w_A Transcriptional activat 98.8 3.9E-08 1.3E-12 67.8 9.7 86 14-101 172-267 (293)
185 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-07 4.8E-12 64.9 11.2 85 31-117 115-208 (293)
186 3n71_A Histone lysine methyltr 98.8 1.4E-07 4.9E-12 70.3 11.9 80 27-108 347-435 (490)
187 4f3v_A ESX-1 secretion system 98.7 1E-08 3.4E-13 71.7 4.8 76 31-113 171-249 (282)
188 2ooe_A Cleavage stimulation fa 98.7 1.1E-07 3.8E-12 70.4 10.2 85 20-112 2-86 (530)
189 4f3v_A ESX-1 secretion system 98.7 3.7E-07 1.2E-11 63.8 11.1 95 15-116 120-219 (282)
190 3qwp_A SET and MYND domain-con 98.6 3E-07 1E-11 67.5 10.1 79 27-107 325-412 (429)
191 1klx_A Cysteine rich protein B 98.6 9.6E-07 3.3E-11 54.8 11.0 85 16-112 44-136 (138)
192 1nzn_A CGI-135 protein, fissio 98.6 5E-07 1.7E-11 55.9 9.4 80 27-112 31-115 (126)
193 2xm6_A Protein corresponding t 98.6 5.2E-07 1.8E-11 66.2 10.5 92 14-115 348-450 (490)
194 1klx_A Cysteine rich protein B 98.6 3.5E-07 1.2E-11 56.9 8.2 90 14-117 12-105 (138)
195 1hz4_A MALT regulatory protein 98.6 5.2E-07 1.8E-11 63.5 9.9 98 16-115 72-184 (373)
196 3ly7_A Transcriptional activat 98.6 5.7E-07 1.9E-11 65.0 9.8 84 25-115 271-354 (372)
197 3u64_A Protein TP_0956; tetrat 98.6 3.9E-07 1.3E-11 63.9 8.6 84 14-103 180-272 (301)
198 3bee_A Putative YFRE protein; 98.5 1.2E-06 4E-11 51.3 8.6 61 11-74 23-83 (93)
199 1y8m_A FIS1; mitochondria, unk 98.5 4.5E-06 1.5E-10 52.6 11.1 99 9-111 14-117 (144)
200 3o48_A Mitochondria fission 1 98.5 7.7E-06 2.6E-10 50.9 11.7 100 9-112 15-119 (134)
201 3e4b_A ALGK; tetratricopeptide 98.4 4.9E-07 1.7E-11 66.3 7.2 90 13-117 233-330 (452)
202 3n71_A Histone lysine methyltr 98.4 7E-07 2.4E-11 66.7 7.5 86 31-118 309-406 (490)
203 1hz4_A MALT regulatory protein 98.4 3.6E-07 1.2E-11 64.4 5.6 101 14-116 31-146 (373)
204 2xm6_A Protein corresponding t 98.4 3.5E-06 1.2E-10 61.8 10.7 75 31-115 75-157 (490)
205 3qww_A SET and MYND domain-con 98.3 1.6E-06 5.4E-11 63.8 7.4 84 33-118 300-395 (433)
206 3mv2_B Coatomer subunit epsilo 98.3 6.5E-06 2.2E-10 58.2 9.2 94 13-113 152-263 (310)
207 3qwp_A SET and MYND domain-con 98.2 4.8E-06 1.6E-10 61.1 8.1 84 33-118 289-384 (429)
208 3e4b_A ALGK; tetratricopeptide 98.2 5.3E-06 1.8E-10 60.8 8.1 93 13-116 195-294 (452)
209 3ly7_A Transcriptional activat 98.1 1.7E-05 5.8E-10 57.3 8.5 98 13-115 215-320 (372)
210 3mv2_B Coatomer subunit epsilo 98.0 1.4E-05 4.7E-10 56.5 7.0 67 31-103 100-168 (310)
211 3ffl_A Anaphase-promoting comp 98.0 6E-05 2.1E-09 48.6 9.1 83 31-116 63-166 (167)
212 3u64_A Protein TP_0956; tetrat 97.9 5.7E-05 1.9E-09 53.0 8.3 91 23-117 144-251 (301)
213 4b4t_Q 26S proteasome regulato 97.9 3.9E-05 1.3E-09 54.7 7.5 86 14-101 112-205 (434)
214 1b89_A Protein (clathrin heavy 97.8 3.9E-05 1.3E-09 56.7 6.2 80 32-116 149-252 (449)
215 2v5f_A Prolyl 4-hydroxylase su 97.7 0.0002 6.9E-09 42.1 7.1 60 15-80 23-89 (104)
216 1xi4_A Clathrin heavy chain; a 97.7 0.00011 3.9E-09 60.9 7.8 65 28-103 1102-1166(1630)
217 4b4t_Q 26S proteasome regulato 97.7 9.7E-05 3.3E-09 52.6 6.2 71 33-105 6-89 (434)
218 1pc2_A Mitochondria fission pr 97.6 0.00075 2.6E-08 42.9 9.4 61 14-80 52-114 (152)
219 1xi4_A Clathrin heavy chain; a 97.6 0.00018 6.2E-09 59.8 7.9 83 31-115 1221-1324(1630)
220 4gns_B Protein CSD3, chitin bi 97.5 0.00082 2.8E-08 52.6 9.3 61 30-96 336-396 (754)
221 1b89_A Protein (clathrin heavy 97.3 9.9E-05 3.4E-09 54.6 2.5 62 31-111 122-183 (449)
222 4e6h_A MRNA 3'-END-processing 97.3 0.0022 7.4E-08 49.7 9.7 92 13-110 48-144 (679)
223 3ffl_A Anaphase-promoting comp 97.1 0.0027 9.4E-08 40.9 7.2 64 31-100 20-92 (167)
224 4e6h_A MRNA 3'-END-processing 97.0 0.0033 1.1E-07 48.7 7.9 77 18-100 330-407 (679)
225 1ya0_A SMG-7 transcript varian 96.7 0.016 5.4E-07 43.4 9.4 78 31-114 152-229 (497)
226 1nzn_A CGI-135 protein, fissio 96.4 0.035 1.2E-06 34.1 8.2 60 15-80 56-117 (126)
227 2ff4_A Probable regulatory pro 96.3 0.068 2.3E-06 38.5 10.5 67 27-99 167-233 (388)
228 1zbp_A Hypothetical protein VP 96.2 0.026 8.9E-07 39.1 7.5 62 39-106 5-66 (273)
229 3o48_A Mitochondria fission 1 96.0 0.089 3E-06 32.6 8.5 60 15-80 61-121 (134)
230 2ff4_A Probable regulatory pro 95.6 0.21 7.2E-06 35.9 10.5 80 34-115 118-215 (388)
231 2uy1_A Cleavage stimulation fa 95.2 0.099 3.4E-06 38.7 7.9 60 49-113 195-254 (493)
232 4gns_B Protein CSD3, chitin bi 95.1 0.25 8.4E-06 38.9 10.1 44 73-116 339-382 (754)
233 1y8m_A FIS1; mitochondria, unk 95.0 0.21 7.1E-06 31.3 7.8 60 15-80 60-120 (144)
234 4h7y_A Dual specificity protei 94.7 0.11 3.9E-06 33.0 6.0 52 48-103 75-126 (161)
235 1zbp_A Hypothetical protein VP 94.5 0.57 1.9E-05 32.4 9.7 90 12-103 12-132 (273)
236 4b4t_R RPN7, 26S proteasome re 94.4 0.11 3.7E-06 37.9 6.3 67 31-100 131-197 (429)
237 3txn_A 26S proteasome regulato 93.1 0.84 2.9E-05 33.1 8.9 63 36-100 104-168 (394)
238 4h7y_A Dual specificity protei 92.6 1.3 4.3E-05 28.2 8.4 64 15-85 78-141 (161)
239 2w2u_A Hypothetical P60 katani 91.3 0.52 1.8E-05 26.6 4.8 31 30-62 18-48 (83)
240 4g26_A Pentatricopeptide repea 91.1 1.8 6.1E-05 32.1 8.8 66 30-100 104-169 (501)
241 2uy1_A Cleavage stimulation fa 90.9 3.1 0.0001 30.7 10.0 73 31-110 286-359 (493)
242 2v6y_A AAA family ATPase, P60 90.7 0.63 2.2E-05 26.2 4.8 31 30-62 10-40 (83)
243 4g26_A Pentatricopeptide repea 90.7 2.1 7.1E-05 31.8 8.9 66 30-100 139-204 (501)
244 2vkj_A TM1634; membrane protei 90.6 1.5 5.1E-05 25.2 7.2 52 28-83 50-102 (106)
245 3kae_A CDC27, possible protein 89.9 2.9 9.9E-05 27.4 10.2 74 31-106 62-149 (242)
246 2crb_A Nuclear receptor bindin 89.7 0.83 2.9E-05 26.4 4.7 29 70-98 14-42 (97)
247 4a5x_A MITD1, MIT domain-conta 89.7 0.96 3.3E-05 25.6 5.0 31 30-62 15-45 (86)
248 3kae_A CDC27, possible protein 88.3 3.7 0.00013 26.9 7.5 56 32-98 34-89 (242)
249 1wfd_A Hypothetical protein 15 88.1 1.2 4.3E-05 25.5 4.8 31 30-62 14-44 (93)
250 2v6x_A Vacuolar protein sortin 88.0 1.3 4.5E-05 24.8 4.8 30 31-62 13-42 (85)
251 3mkq_B Coatomer subunit alpha; 87.5 3 0.0001 26.9 6.8 62 30-97 33-115 (177)
252 1ya0_A SMG-7 transcript varian 87.2 2 6.8E-05 32.1 6.6 62 15-82 170-231 (497)
253 2cpt_A SKD1 protein, vacuolar 87.0 1.5 5E-05 26.4 4.8 30 31-62 18-47 (117)
254 4b4t_S RPN3, 26S proteasome re 86.8 1.9 6.6E-05 32.5 6.4 73 28-104 228-303 (523)
255 2cfu_A SDSA1; SDS-hydrolase, l 86.6 2.1 7.1E-05 33.1 6.7 50 31-86 449-498 (658)
256 3ax2_A Mitochondrial import re 85.6 2.2 7.6E-05 23.4 4.7 32 35-72 21-52 (73)
257 3spa_A Mtrpol, DNA-directed RN 85.0 6.2 0.00021 32.6 8.7 70 29-100 125-194 (1134)
258 3mkq_A Coatomer beta'-subunit; 84.8 6.3 0.00021 30.0 8.5 27 31-59 681-707 (814)
259 3t5x_A PCI domain-containing p 82.7 6.3 0.00021 25.7 6.8 34 29-64 12-45 (203)
260 3myv_A SUSD superfamily protei 82.6 6.6 0.00022 28.7 7.6 52 49-100 164-219 (454)
261 3t5x_A PCI domain-containing p 81.7 2.6 8.8E-05 27.6 4.7 39 69-107 12-50 (203)
262 1wy6_A Hypothetical protein ST 81.7 7.7 0.00026 24.5 7.4 50 48-101 106-155 (172)
263 3lew_A SUSD-like carbohydrate 81.7 7.1 0.00024 28.9 7.5 53 49-101 174-233 (495)
264 2ijq_A Hypothetical protein; s 81.0 8.3 0.00028 24.4 9.3 64 34-99 35-103 (161)
265 2crb_A Nuclear receptor bindin 80.9 4.5 0.00015 23.3 4.8 31 30-62 14-44 (97)
266 3kez_A Putative sugar binding 80.9 8.1 0.00028 28.2 7.5 52 49-100 170-225 (461)
267 1o9d_A 14-3-3-like protein C; 80.8 7.5 0.00026 26.6 6.8 50 50-99 152-206 (260)
268 2w2u_A Hypothetical P60 katani 80.6 4.2 0.00014 22.7 4.7 14 49-62 16-29 (83)
269 3mcx_A SUSD superfamily protei 80.6 8.6 0.00029 28.2 7.6 53 49-101 176-232 (477)
270 2o8p_A 14-3-3 domain containin 79.9 7.2 0.00025 26.2 6.3 53 48-100 140-197 (227)
271 1om2_A Protein (mitochondrial 79.2 3.6 0.00012 23.8 4.1 26 35-62 24-49 (95)
272 2v6y_A AAA family ATPase, P60 78.1 5.6 0.00019 22.1 4.7 13 50-62 9-21 (83)
273 2br9_A 14-3-3E, 14-3-3 protein 76.4 15 0.00051 24.7 8.4 50 50-99 147-201 (234)
274 3ax2_A Mitochondrial import re 75.4 8 0.00027 21.1 5.3 32 75-106 21-52 (73)
275 3qnk_A Putative lipoprotein; a 75.3 14 0.00047 27.4 7.5 52 49-100 153-211 (517)
276 3snx_A SUSD homolog, putative 75.2 11 0.00039 27.5 6.9 33 68-100 188-220 (460)
277 1wfd_A Hypothetical protein 15 74.1 7.9 0.00027 22.0 4.7 15 48-62 11-25 (93)
278 3iqu_A 14-3-3 protein sigma; s 74.1 13 0.00043 25.1 6.3 50 50-99 150-204 (236)
279 2v6x_A Vacuolar protein sortin 73.9 8.3 0.00028 21.4 4.7 23 77-99 19-41 (85)
280 3spa_A Mtrpol, DNA-directed RN 73.8 38 0.0013 28.2 10.7 67 30-101 164-231 (1134)
281 4a5x_A MITD1, MIT domain-conta 73.6 8.8 0.0003 21.5 4.7 23 77-99 22-44 (86)
282 3hdx_A SUSD homolog, SUSD supe 73.3 15 0.00051 26.9 7.2 31 70-100 196-226 (478)
283 2rpa_A Katanin P60 ATPase-cont 72.7 4.4 0.00015 22.5 3.2 27 34-62 15-41 (78)
284 4gq2_M Nucleoporin NUP120; bet 72.5 12 0.00041 30.1 6.8 53 36-98 815-867 (950)
285 4gq2_M Nucleoporin NUP120; bet 72.2 21 0.00072 28.7 8.2 72 33-106 842-933 (950)
286 2cpt_A SKD1 protein, vacuolar 71.6 8.8 0.0003 22.9 4.6 14 49-62 15-28 (117)
287 3efz_A 14-3-3 protein; 14-3-3, 71.1 14 0.00047 25.4 6.0 51 50-100 169-226 (268)
288 1om2_A Protein (mitochondrial 71.1 6.2 0.00021 22.8 3.7 29 75-103 24-52 (95)
289 3mkq_A Coatomer beta'-subunit; 70.7 20 0.00069 27.2 7.6 30 68-97 678-707 (814)
290 2cwy_A Hypothetical protein TT 70.1 13 0.00044 21.2 6.8 57 35-99 5-67 (94)
291 2yhe_A SEC-alkyl sulfatase; hy 72.7 0.94 3.2E-05 35.1 0.0 54 31-90 461-514 (668)
292 4fhn_B Nucleoporin NUP120; pro 68.9 21 0.00072 29.2 7.6 68 33-102 844-930 (1139)
293 3t5v_B Nuclear mRNA export pro 68.9 12 0.0004 27.7 5.7 66 36-104 181-254 (455)
294 3mv2_A Coatomer subunit alpha; 68.8 28 0.00096 24.6 10.2 27 80-106 216-242 (325)
295 3uzd_A 14-3-3 protein gamma; s 67.5 26 0.00089 23.8 8.4 50 50-99 148-202 (248)
296 3ubw_A 14-3-3E, 14-3-3 protein 66.9 28 0.00095 23.8 8.4 50 50-99 173-227 (261)
297 3i4g_A SUSD-like carbohydrate 66.5 29 0.00099 25.9 7.5 51 50-100 168-227 (528)
298 2npm_A 14-3-3 domain containin 65.4 30 0.001 23.7 8.4 50 50-99 173-226 (260)
299 3jq1_A SUSD superfamily protei 64.7 15 0.00052 27.0 5.6 51 49-99 154-208 (481)
300 3re2_A Predicted protein; meni 62.3 20 0.00069 26.1 5.6 48 52-99 276-324 (472)
301 2cfu_A SDSA1; SDS-hydrolase, l 61.9 18 0.00062 27.9 5.8 44 73-116 451-494 (658)
302 1qsa_A Protein (soluble lytic 61.6 52 0.0018 25.2 10.3 58 35-99 290-347 (618)
303 2e2a_A Protein (enzyme IIA); h 61.3 21 0.0007 20.9 4.7 35 26-62 15-49 (105)
304 4b4t_P 26S proteasome regulato 60.9 45 0.0015 24.2 8.5 67 30-98 136-204 (445)
305 1wcr_A PTS system, N, N'-diace 60.4 22 0.00075 20.7 4.7 34 27-62 14-47 (103)
306 4gq4_A Menin; tumor suppressor 59.5 23 0.0008 26.2 5.6 48 52-99 283-331 (489)
307 4fhn_B Nucleoporin NUP120; pro 58.0 18 0.0006 29.7 5.3 51 37-97 818-868 (1139)
308 2yin_A DOCK2, dedicator of cyt 57.4 11 0.00037 27.7 3.7 50 32-86 92-141 (436)
309 3k1s_A PTS system, cellobiose- 57.0 27 0.00091 20.6 4.7 33 27-61 18-50 (109)
310 3mkr_B Coatomer subunit alpha; 54.5 54 0.0018 23.1 9.9 28 34-63 105-132 (320)
311 3mkq_B Coatomer subunit alpha; 54.1 40 0.0014 21.5 7.3 49 38-97 12-60 (177)
312 4b4t_S RPN3, 26S proteasome re 53.1 71 0.0024 24.1 7.6 36 28-65 267-302 (523)
313 4b4t_P 26S proteasome regulato 52.6 64 0.0022 23.4 9.2 69 30-100 176-247 (445)
314 3eab_A Spastin; spastin, MIT, 51.1 21 0.00073 20.2 3.5 14 49-62 13-26 (89)
315 3jys_A SUSD superfamily protei 50.6 60 0.002 24.0 6.8 51 49-99 161-222 (499)
316 3ckc_A SUSD; TPR repeat, carbo 50.4 62 0.0021 23.7 6.9 51 49-99 169-231 (527)
317 3ihv_A SUSD homolog; NP_813570 49.7 61 0.0021 24.0 6.8 52 49-100 163-233 (535)
318 3u84_A Menin; MLL, JUND, ledgf 49.0 27 0.00094 26.0 4.5 49 51-99 297-346 (550)
319 4a1g_A Mitotic checkpoint seri 48.0 47 0.0016 20.7 5.0 36 67-102 97-132 (152)
320 2xze_A STAM-binding protein; h 47.6 27 0.00091 21.6 3.9 32 29-62 38-69 (146)
321 3otn_A SUSD superfamily protei 47.0 49 0.0017 24.2 5.8 50 51-100 163-226 (482)
322 2ymb_A MITD1, MIT domain-conta 44.3 4.7 0.00016 27.6 0.0 30 31-62 23-52 (257)
323 3esl_A Checkpoint serine/threo 43.8 66 0.0023 21.1 9.3 70 27-101 76-145 (202)
324 2vkj_A TM1634; membrane protei 42.9 46 0.0016 19.0 5.1 33 70-102 52-84 (106)
325 3l8r_A PTCA, putative PTS syst 42.3 54 0.0018 19.6 6.7 34 26-61 32-65 (120)
326 4b4t_R RPN7, 26S proteasome re 42.2 93 0.0032 22.3 7.8 70 30-101 167-238 (429)
327 3t5v_B Nuclear mRNA export pro 40.3 90 0.0031 23.0 6.3 35 29-65 218-253 (455)
328 3txn_A 26S proteasome regulato 38.7 1.1E+02 0.0037 22.1 10.7 70 28-99 136-209 (394)
329 3s6n_M SurviVal motor neuron p 38.7 28 0.00096 16.1 2.2 17 85-101 16-32 (37)
330 2pmr_A Uncharacterized protein 37.6 55 0.0019 18.4 4.6 29 29-59 37-65 (87)
331 3jq0_A SUSD superfamily protei 37.2 70 0.0024 23.5 5.3 31 69-99 181-219 (493)
332 2oo2_A Hypothetical protein AF 36.6 57 0.002 18.3 4.6 30 28-59 32-61 (86)
333 2jpu_A ORF C02003 protein; sol 34.0 68 0.0023 19.4 4.1 31 30-62 6-36 (129)
334 3kez_A Putative sugar binding 33.8 65 0.0022 23.4 4.7 29 71-99 338-366 (461)
335 2dl1_A Spartin; SPG20, MIT, st 33.6 77 0.0026 18.9 6.8 31 30-62 21-51 (116)
336 2yhe_A SEC-alkyl sulfatase; hy 39.3 9.1 0.00031 29.7 0.0 45 73-117 463-507 (668)
337 4aez_C MAD3, mitotic spindle c 31.9 1.1E+02 0.0039 20.3 6.0 35 67-101 146-180 (223)
338 2a9u_A Ubiquitin carboxyl-term 30.9 95 0.0032 19.1 4.8 31 30-62 41-71 (144)
339 2zan_A Vacuolar protein sortin 30.8 10 0.00036 27.5 0.0 30 31-62 11-40 (444)
340 1ixm_A SPO0B, protein (sporula 30.7 1.1E+02 0.0036 19.6 5.3 18 41-60 42-59 (192)
341 3l22_A SUSD superfamily protei 29.5 37 0.0013 24.5 2.8 29 70-98 200-228 (441)
342 3hdx_A SUSD homolog, SUSD supe 26.7 97 0.0033 22.6 4.6 30 70-99 363-392 (478)
343 1o3u_A Conserved hypothetical 25.9 1.1E+02 0.0037 18.1 5.0 32 29-62 14-45 (135)
344 3nqp_A SUSD superfamily protei 25.1 1.9E+02 0.0065 21.2 6.0 51 49-99 167-241 (514)
345 3myv_A SUSD superfamily protei 25.1 82 0.0028 22.8 3.9 29 71-99 335-365 (454)
346 2npu_A FKBP12-rapamycin comple 24.9 1.2E+02 0.0041 18.2 4.7 60 34-99 43-102 (126)
347 4a1g_A Mitotic checkpoint seri 24.7 1.3E+02 0.0045 18.6 6.0 32 29-62 99-130 (152)
348 3ph0_C ASCG; type III secretio 23.8 86 0.0029 16.2 7.2 39 48-91 21-60 (61)
349 3mcx_A SUSD superfamily protei 23.8 84 0.0029 22.8 3.8 30 70-99 356-386 (477)
350 3jq1_A SUSD superfamily protei 23.5 1.2E+02 0.0042 22.1 4.6 29 71-99 361-389 (481)
351 1qsa_A Protein (soluble lytic 23.4 1.4E+02 0.0048 22.8 5.0 61 50-115 269-329 (618)
352 3bu8_A Telomeric repeat-bindin 23.3 1.7E+02 0.0059 19.6 7.8 70 10-85 85-162 (235)
353 3snx_A SUSD homolog, putative 22.8 1.1E+02 0.0037 22.3 4.2 29 71-99 321-350 (460)
354 2br9_A 14-3-3E, 14-3-3 protein 21.5 1.6E+02 0.0055 19.6 4.5 27 76-102 10-36 (234)
355 2g0u_A Type III secretion syst 21.5 1.2E+02 0.0042 17.2 5.4 35 48-89 31-65 (92)
356 2wvi_A Mitotic checkpoint seri 21.1 1.6E+02 0.0056 18.4 8.4 63 27-101 62-126 (164)
357 3iqu_A 14-3-3 protein sigma; s 20.2 2E+02 0.0067 19.3 4.7 29 75-103 12-40 (236)
358 2wxu_A Phospholipase C; cytoly 20.1 2E+02 0.0068 20.7 4.9 32 29-62 96-127 (370)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=1.2e-20 Score=117.31 Aligned_cols=88 Identities=35% Similarity=0.525 Sum_probs=73.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
+..++|+.++.+.++|+.+++.| +|++|+..|+++|++ +|.++.+++++|.|+..+|++++|+.+++++++++|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKG--DYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 34578888888888888888887 888888888888888 888888888888888888888888888888888888
Q ss_pred CCHHHHHHhhccCc
Q 033440 103 TNVKVVILCSGSHP 116 (119)
Q Consensus 103 ~~~~a~~~~a~~~~ 116 (119)
+++.+|+.+|.++.
T Consensus 79 ~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 79 KFIKGYIRKAACLV 92 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 88888888888764
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=1e-18 Score=108.51 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=92.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..+++++.++|.++..+..+|.+++..| ++++|+..|+++|++ +|+++.+++++|.++..+|++++|+.+
T Consensus 30 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 30 PTAMRHYNEAVKRDPENAILYSNRAACLTKLM--EFQRALDDCDTCIRL----DSKFIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc--cHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 56788899999999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|++..++..++.++
T Consensus 104 ~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 104 YEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999998875
No 3
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.77 E-value=5.8e-19 Score=113.23 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=84.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+.++..++|+++.+++.+|..+++.| +|++|+..|++++.+ +|.++.+++++|.|+..+|+|++|+..|+++++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKG--RIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34445678999999999999999998 999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHhhccCcC
Q 033440 100 LCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 100 l~p~~~~a~~~~a~~~~~ 117 (119)
++|+++.+|+++|.+|..
T Consensus 99 l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HSSSCCHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHH
Confidence 999999999999998753
No 4
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=2.2e-18 Score=109.60 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=89.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+..+...+|+.+..+..+|..|++.| +|++|+..|+++|++ +|+++.+++++|.++..+|++++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--EYDLAKKYICTYINV----QERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 346677777888888999999999999999988 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|+++.+++.+|.++.
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999998764
No 5
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=7.1e-17 Score=107.32 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=93.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHH----------------HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKE----------------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN 76 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 76 (119)
.++++..++++..++|+++..+.. +|.++...| ++++|+..|++++++ +|+++.++++
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~ 93 (208)
T 3urz_A 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--NYDKAYLFYKELLQK----APNNVDCLEA 93 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHH
Confidence 457888899999999999999999 999999999 999999999999999 9999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 77 RAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|.++..+|++++|+..++++++++|+++.+++.+|.+|+
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 6
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=1.9e-17 Score=102.63 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH-
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV- 105 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~- 105 (119)
.++.+.++.++|+.+++.| +|++|+..|+++|++ +|+++.++.++|.||..+|+|++|+.+++++++++|++.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~--~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQK--DFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 3567889999999999999 999999999999999 999999999999999999999999999999999998764
Q ss_pred ------HHHHHhhccCc
Q 033440 106 ------KVVILCSGSHP 116 (119)
Q Consensus 106 ------~a~~~~a~~~~ 116 (119)
.+|+++|.++.
T Consensus 78 ~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57777776653
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=4.4e-17 Score=103.53 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=85.7
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
..+.++..++|++...+..+|..++..| +|++|+..|++++.+ +|.++.+++++|.|+..+|++++|+..|+++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSG--XYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3577788889999999999999999988 999999999999999 9999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHhhccCcC
Q 033440 98 LKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 98 l~l~p~~~~a~~~~a~~~~~ 117 (119)
+.++|+++.+++.+|.++..
T Consensus 82 l~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 82 AVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHSTTCTHHHHHHHHHHHH
T ss_pred HhcCCCCchHHHHHHHHHHH
Confidence 99999999999999988743
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.6e-17 Score=99.02 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=56.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++..++|+++..+..+|.+++..| +|++|+..|++++.+ +|+++.+++++|.++..+|++++|+..+
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALETL 95 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4455555555566666666666666666655 666666666666666 5666666666666666666666666666
Q ss_pred HHHHhhC------CCCHHHHHHhhcc
Q 033440 95 EEALKLC------PTNVKVVILCSGS 114 (119)
Q Consensus 95 ~~al~l~------p~~~~a~~~~a~~ 114 (119)
+++++++ |++..++..++.+
T Consensus 96 ~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 96 DAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCcccCCchhHHHHHHHHHHH
Confidence 6666666 5555555555544
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=9.4e-17 Score=102.02 Aligned_cols=98 Identities=17% Similarity=0.120 Sum_probs=91.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++++.+++++.++|+++.++..+|.++...| ++++|+..|++++++ +|+++.+++++|.++..+|++.+|+.
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEE--NTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--chHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 357888999999999999999999999999999 999999999999999 99999999999999999999998887
Q ss_pred H-HHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 D-AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~-~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
. ++++++++|+++.++..++.++.
T Consensus 121 ~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 6 58999999999999998887764
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=8.1e-17 Score=101.03 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=75.2
Q ss_pred hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+.++..++|++...+..+|..+++.| +|++|+..|++++.. +|.++.+++++|.++..+|++++|+..+++++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAG--KWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445556678888888888888888888 888888888888888 88888888888888888888888888888888
Q ss_pred hhCCCCHHHHHHhhccCc
Q 033440 99 KLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 99 ~l~p~~~~a~~~~a~~~~ 116 (119)
.++|+++.+++.+|.++.
T Consensus 80 ~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHCTTCTHHHHHHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHH
Confidence 888888888888887764
No 11
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=3.4e-16 Score=100.25 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=83.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++..++|.++..|..+|.+++..| +|++|+..|++++.+ +|+++.+++++|.|+..+|++++|+.
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--QFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 356788899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCH
Q 033440 93 DAEEALKLCPTNV 105 (119)
Q Consensus 93 ~~~~al~l~p~~~ 105 (119)
.+++++++.|+..
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 9999999999875
No 12
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.67 E-value=2.7e-16 Score=101.61 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc------------hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE------------NSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.+..+..+|+.+++.| +|++|+..|+++|++ +|+ ++.+|.|+|.|+.++|+|++|+.+|+++
T Consensus 10 ~a~~~~~~G~~l~~~g--~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAG--EYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6888999999999999 999999999999999 665 3459999999999999999999999999
Q ss_pred Hhh-------CCCCHHHH----HHhhccCc
Q 033440 98 LKL-------CPTNVKVV----ILCSGSHP 116 (119)
Q Consensus 98 l~l-------~p~~~~a~----~~~a~~~~ 116 (119)
|++ +|++.++| +++|.++.
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~ 113 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALD 113 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHH
Confidence 999 99999999 99998874
No 13
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=3.3e-16 Score=99.91 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+|..+..+.++|.++++.| +|++|+..++++|.+ +|.++.+++++|.++..+|++++|+.++++++.++|++.
T Consensus 59 ~~~~~~~~~nla~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIG--DLHEAEETSSEVLKR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4444445555555555544 555555555555555 555555555555555555555555555555555555444
No 14
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=9.7e-16 Score=97.87 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=64.2
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++..++|.++..+..+|.+++..| +|++|+..|++++.+ +|+++.+++++|.++..+|++++|+..
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASG--QHEKAAEDAELATVV----DPKYSKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 34556666666667777777777777777766 677777777777777 666677777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHhhc
Q 033440 94 AEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~ 113 (119)
++++++++|++..+|+.++.
T Consensus 102 ~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 102 YEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHH
Confidence 77777777766666655554
No 15
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=7.4e-16 Score=98.42 Aligned_cols=85 Identities=28% Similarity=0.303 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
++..+..+..+|..++..| +|++|+..|++++.+ +|.++.+++++|.|+..+|+|++|+.+++++++++|+++.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARK--EYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 4567899999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcC
Q 033440 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
+|+.+|.++..
T Consensus 81 ~~~~lg~~~~~ 91 (164)
T 3sz7_A 81 AWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 16
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-15 Score=92.86 Aligned_cols=84 Identities=26% Similarity=0.376 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|..+..+..+|..++..| +|++|+..|++++.+ +|.++.+++++|.|+..+|++++|+.+++++++++|+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 356889999999999999 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhccCcC
Q 033440 108 VILCSGSHPN 117 (119)
Q Consensus 108 ~~~~a~~~~~ 117 (119)
++.+|.++..
T Consensus 75 ~~~lg~~~~~ 84 (126)
T 3upv_A 75 YIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.6e-15 Score=100.28 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=92.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++..++|+++..+..+|..+...| ++++|+..|++++++ + +++.+++++|.++..+|++++|+.
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~-~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--ERDKAEASLKQALAL----E-DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 346778889999999999999999999999999 999999999999999 8 899999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|+++.+++.+|.++..
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=8e-16 Score=102.80 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=76.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL--------- 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l--------- 84 (119)
++++..++++..++|+++.++..+|..+.+.| ++++|+..|++++++ +|+++.+++++|.++..+
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLG--LVNPALENGKTLVAR----TPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 45667777777778888888888888888877 788888888888888 788888888888888888
Q ss_pred --cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 85 --GNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 --~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|++++|+..++++++++|+++.+++.+|.++.
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88888888888888888888888877777654
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=1e-15 Score=118.65 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=52.1
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++++++|+++.++.++|..+.+.| ++++|+..|+++|++ +|+++.+++++|.++..+|++++|+..|
T Consensus 27 eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--~~~eA~~~~~~Al~l----~P~~~~a~~nLg~~l~~~g~~~~A~~~~ 100 (723)
T 4gyw_A 27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQG--KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQCY 100 (723)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555555555555555555555555 555555555555555 5555555555555555555555555555
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|++..+|+++|.+|
T Consensus 101 ~kAl~l~P~~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 101 TRAIQINPAFADAHSNLASIH 121 (723)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555555555544
No 20
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-15 Score=88.94 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN----- 104 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----- 104 (119)
.+..+..+|..++..| +|++|+..|++++.+ +|.++.+++++|.|+..+|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG--LYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4678999999999999 999999999999999 99999999999999999999999999999999999999
Q ss_pred -HHHHHHhhccCc
Q 033440 105 -VKVVILCSGSHP 116 (119)
Q Consensus 105 -~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 77 ~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 77 RSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 899999887763
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=5.7e-16 Score=112.27 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=74.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc-HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH-YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++++..+++++.++|++..+|..+|.++...| + +++|+..|+++|.+ +|+++.+++++|.++..+|++++|+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l----~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHccCHHHHH
Confidence 566777777777778877788888888877777 6 77888888887777 7777777777777777777777777
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+|+++++++|++..+|+.+|.++
T Consensus 187 ~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 187 EFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCHHHHHHHHHHH
Confidence 777777777777777777777665
No 22
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.63 E-value=7e-15 Score=93.66 Aligned_cols=51 Identities=29% Similarity=0.305 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|.++.+++++|.|+.++|+|++|+.+|+++++++|+++.+|+++|.++..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 109 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA 109 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999998753
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.4e-15 Score=110.20 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=92.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+++++.++|++..+|..+|.++...| ++++|+..|+++|++ +|.++.+++++|.++..+|++++|+.
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g--~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHH
Confidence 457888999999999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++++++++|++..+|+.+|.++..
T Consensus 222 ~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 222 YVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 24
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.63 E-value=5.8e-15 Score=89.64 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=84.6
Q ss_pred ChhhHHhHHHHHHh---cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.++++..+++++.+ +|+.+..+..+|.+++..| +|++|+..|++++++ +|+++.+++++|.|+..+|++++
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--EYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCCHHH
Confidence 34677889999999 7999999999999999999 999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHH
Q 033440 90 AFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~ 109 (119)
|+..+++++..+|+++....
T Consensus 80 A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999877543
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=2e-15 Score=117.03 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=94.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++++++|+++.++.++|+++...| ++++|+..|+++|++ +|+++.+++++|.++..+|++++|+.
T Consensus 59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g--~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ--DVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 457888999999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.|+++++++|++..+++++|.++.
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHH
Confidence 999999999999999999998874
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=3e-15 Score=94.94 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=83.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++..++|.++..|..+|.++...| +|++|+..|++++.+ +|+++.+++++|.|+..+|++++|+.
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--QYDLAIHSYSYGAVM----DIXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 356778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHH
Q 033440 93 DAEEALKLCPTNVKV 107 (119)
Q Consensus 93 ~~~~al~l~p~~~~a 107 (119)
.++++++++|+++..
T Consensus 111 ~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 111 GLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCGGG
T ss_pred HHHHHHHHCcCCCcc
Confidence 999999999987654
No 27
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=2.8e-15 Score=96.77 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=82.3
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcH----------HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY----------SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
.+++.++.+..++|++++.|.+.|.++...+ ++ ++|+..|+++|++ +|+++.+++++|.+|..+
T Consensus 20 eA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~--~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELS--QFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--ccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHh
Confidence 5566788888999999999999999999987 65 5999999999999 999999999999999988
Q ss_pred c-----------CHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 85 G-----------NYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 85 ~-----------~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
| ++++|+..|++|++++|++...+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5 89999999999999999998766554
No 28
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=2.5e-15 Score=94.18 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=85.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++.+...+|.++..+..+|.++...| +|++|+..|++++.+ +|+++.+++++|.|+..+|++++|+.
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--LYEQALQSYSYGALM----DINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 346778889999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHH
Q 033440 93 DAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~ 110 (119)
.++++++++|+++.....
T Consensus 108 ~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 108 GFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCCCCcchHHH
Confidence 999999999988655443
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=2.1e-15 Score=97.34 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=73.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+.....+..+..++|.+...+..+|.+++..| ++++|+..|++++++ +|.++.+++++|.++..+|++++|+..
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG--EHDKAIEAYEKTISI----KPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--CchhHHHHHHHHHHh----cchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 34556677777788888888888888888887 888888888888888 888888888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHhhcc
Q 033440 94 AEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~ 114 (119)
++++++++|++ +.+.+|.+
T Consensus 164 ~~~al~~~p~~--a~~~lali 182 (184)
T 3vtx_A 164 FKKALEKEEKK--AKYELALV 182 (184)
T ss_dssp HHHHHHTTHHH--HHHCSCCS
T ss_pred HHHHHhCCccC--HHHHHHhh
Confidence 88888888865 44555544
No 30
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=3.5e-15 Score=91.68 Aligned_cols=85 Identities=14% Similarity=0.021 Sum_probs=47.7
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++...+|+++.++..+|.++...| ++++|+..|++++++ +|+++.+++++|.++..+|++++|+..+
T Consensus 35 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (121)
T 1hxi_A 35 EAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASL 108 (121)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555556666666666666666655 666666666666666 5666666666666666666666666666
Q ss_pred HHHHhhCCCCH
Q 033440 95 EEALKLCPTNV 105 (119)
Q Consensus 95 ~~al~l~p~~~ 105 (119)
+++++++|++.
T Consensus 109 ~~al~~~P~~~ 119 (121)
T 1hxi_A 109 RAWLLSQPQYE 119 (121)
T ss_dssp HHHHC------
T ss_pred HHHHHhCcCCC
Confidence 66666665543
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=2.1e-15 Score=107.19 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=77.0
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---------------HHHHHHHHHHHH
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVNL 82 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~~ 82 (119)
..++.....+|..+..+..+|+.+++.| +|++|+..|++++.+ .|.+ ..++.++|.|+.
T Consensus 134 ~~~~~a~~~~p~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 134 ESWEMNSEEKLEQSTIVKERGTVYFKEG--KYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667888888888888888888 888888888888888 7766 588888888888
Q ss_pred HhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 83 LLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888888888888888888888888764
No 32
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.60 E-value=4.3e-15 Score=91.48 Aligned_cols=83 Identities=33% Similarity=0.458 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
+..+..+..+|..++..| +|++|+..|.+++.. +|.++.+++++|.|+..+|++++|+..++++++++|+++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhh----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence 345666777777777777 777777777777777 77777777777777777777777777777777777777777
Q ss_pred HHHhhccCc
Q 033440 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++.+|.++.
T Consensus 80 ~~~l~~~~~ 88 (137)
T 3q49_B 80 HFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
No 33
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=3e-14 Score=84.67 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++.+...+|.++..+..+|..++..| ++++|+..+.+++.. .|.++.++.++|.++..+|++++|+.
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 356778888888999999999999999999998 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++++++++|+++.++..++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 94 TYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999887653
No 34
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.9e-15 Score=111.41 Aligned_cols=95 Identities=25% Similarity=0.239 Sum_probs=84.2
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---------------HHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVN 81 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~ 81 (119)
+..++.....+|..+..+..+|+.+++.| +|++|+..|++++.+ .|.+ ..+++++|.|+
T Consensus 254 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 254 KESWEMDTKEKLEQAAIVKEKGTVYFKGG--KYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778899999999999999988 999999999999999 7766 68999999999
Q ss_pred HHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 82 LLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++|+|++|+.+|+++++++|+++.+|+++|.+|..
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988753
No 35
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.59 E-value=2.1e-14 Score=82.52 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+..+..+|..++..| ++++|+..|.+++.. .|.++.+++++|.++..+|++++|+..++++++++|++..++
T Consensus 7 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 46788999999999999 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhccCc
Q 033440 109 ILCSGSHP 116 (119)
Q Consensus 109 ~~~a~~~~ 116 (119)
..+|.++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 36
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=5.9e-15 Score=98.28 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-------HHHHHHHHHHHHhcC
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-------VLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~~~~~l~~ 86 (119)
++++..++++...+|+++..+..+|.++...| ++++|+..|++++.+ .|+++ .++.++|.++..+|+
T Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 59 KEAADYFDIAIKKNYNLANAYIGKSAAYRDMK--NNQEYIATLTEGIKA----VPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 34555566666666666666666666666666 666666666666666 66655 446666666666666
Q ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHhhccC
Q 033440 87 YRRAFTDAEEALKLCPT--NVKVVILCSGSH 115 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~--~~~a~~~~a~~~ 115 (119)
+++|+..++++++++|+ ++.+++.+|.++
T Consensus 133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 133 IEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66666666666666666 666666666554
No 37
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=3.9e-14 Score=85.44 Aligned_cols=97 Identities=22% Similarity=0.168 Sum_probs=87.0
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++...+|+.+..+..+|..++..| ++++|+..+.+++.. .|.++.+++.+|.++..+|++++|+..
T Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--NYAGAVQDCERAICI----DPAYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--chHHHHHHHHHHHhc----CccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45677788888888888999999999999988 999999999999999 899999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|++..+++.+|.++.
T Consensus 103 ~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 103 YKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHH
Confidence 99999999999999998887763
No 38
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=89.99 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=89.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++...+|.+...+..+|.+++..| ++++|+..+++++.. .|.++.+++++|.++..+|++++|+.
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQL----EPTFIKGYTRKAAALEAMKDYTKAMD 105 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHhhHHHHHH
Confidence 346777888888889989999999999999988 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|.+..+++.++.++..
T Consensus 106 ~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 106 VYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999998887643
No 39
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.57 E-value=2.7e-14 Score=87.67 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
.+..+|..+++.| ++++|+..|++++.. +|+++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus 19 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4678999999999 999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q 033440 113 GSHP 116 (119)
Q Consensus 113 ~~~~ 116 (119)
.++.
T Consensus 93 ~~~~ 96 (121)
T 1hxi_A 93 VSHT 96 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 40
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=2.6e-14 Score=101.49 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=89.3
Q ss_pred hhhHHhHHHHHHhcHHH---------------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440 14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
++++..+.++..++|.. +..+.++|.++++.| +|++|+..|++++++ +|+++.+++++|
T Consensus 164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg 237 (336)
T 1p5q_A 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRG 237 (336)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence 35666777777777776 799999999999999 999999999999999 999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|++++|+.+++++++++|++..+++.++.++.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=3.6e-14 Score=91.47 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=78.0
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---------------------------- 65 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------- 65 (119)
++++..++++++++|+++.++..+|.+++..| ++++|+..+.+++...|.
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666677777777777777777777777766 666666666666554221
Q ss_pred --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..|.++.++..+|.++..+|++++|+..++++++++|+++.+|+.+|.+|..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 1777888889999999999999999999999999999999999999988753
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=4.2e-14 Score=94.15 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=88.6
Q ss_pred hhhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 14 ESEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++++..++++..++| .+...+..+|.+++..| ++++|+..|.+++.. +|.++.++.++|.++..+|++++|+.
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--KYKEAADYFDIAIKK----NYNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--cHHHHHHHHHHHHHh----CcchHHHHHHHHHHHHHcccHHHHHH
Confidence 467788899989888 78889999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCH-------HHHHHhhccCc
Q 033440 93 DAEEALKLCPTNV-------KVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~-------~a~~~~a~~~~ 116 (119)
.++++++++|+++ .+|+.+|.++.
T Consensus 98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 98 TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999 66888887653
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=92.02 Aligned_cols=96 Identities=26% Similarity=0.352 Sum_probs=87.0
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++.+...+|..+..+..+|..++..| ++++|+..|++++.. .|.++.++.++|.++..+|++++|+..++
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444555555689999999999999999998 999999999999999 99999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHhhccCcC
Q 033440 96 EALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++|+++.+++.+|.++..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743
No 44
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=2.9e-14 Score=91.63 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=90.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH-HHHhcCH--HH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV-NLLLGNY--RR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~~~l~~~--~~ 89 (119)
.++++..+..+...+|.++..+..+|..++..| ++++|+..|.+++.+ .|.++.++.++|.+ +...|++ ++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--DYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345667888888999999999999999999999 999999999999999 99999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+..++++++++|+++.+++.+|.++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFM 127 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999987743
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=1.8e-13 Score=81.84 Aligned_cols=97 Identities=24% Similarity=0.352 Sum_probs=89.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|.....+..+|..++..| ++++|+..+.+++.. .|.++.++.++|.++..+|++++|+..
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45677788888888988999999999999998 999999999999999 899999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.++..+|.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 100 YQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999999987754
No 46
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.53 E-value=1.3e-14 Score=85.57 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC--CH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT--NV 105 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~ 105 (119)
|+++..+..+|..++..| ++++|+..|++++.. .|.++.+++++|.++..+|++++|+..++++++++|. +.
T Consensus 3 p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAG--NYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CSSTTGGGGHHHHHHSSC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCcHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 344555666777777766 777777777777777 6777777777777777777777777777777777777 77
Q ss_pred HHHHHhhccCcC
Q 033440 106 KVVILCSGSHPN 117 (119)
Q Consensus 106 ~a~~~~a~~~~~ 117 (119)
.+++.+|.++..
T Consensus 77 ~~~~~l~~~~~~ 88 (112)
T 2kck_A 77 DVWAAKADALRY 88 (112)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-13 Score=84.81 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=71.7
Q ss_pred hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
+++..++.+...+|+. ...+..+|.+++..| +|++|+..+.+++.. .|.++.+++++|.++..+|++++|+
T Consensus 46 ~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 46 GALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--DYDKAETEASKAIEK----DGGDVKALYRRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CccCHHHHHHHHHHHHHcCCHHHHH
Confidence 4445566666666665 777778888888877 888888888888887 7777788888888888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
..++++++++|++..++..++.+.
T Consensus 120 ~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 120 LDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888888888877777666543
No 48
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=8.5e-14 Score=86.03 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=79.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-------HHHHHHHHHHHHHhc
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~ 85 (119)
.++++..+++++.++|+++..+..+|.+++..| +|++|+..++++|++ +|++ +.++.++|.++..+|
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--KFAECVQFCEKAVEV----GRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh--hHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHHcC
Confidence 357888999999999999999999999999999 999999999999999 5543 468999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
++++|+..+++++..+|+ +...-
T Consensus 98 ~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CHHHHHHHHHHHHhhCcC-HHHHH
Confidence 999999999999999885 44433
No 49
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=3.6e-14 Score=93.04 Aligned_cols=86 Identities=27% Similarity=0.288 Sum_probs=64.6
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH----------------HHHHHHHHHHHHhcCHH
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS----------------VLYANRAHVNLLLGNYR 88 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~~a~~~~~l~~~~ 88 (119)
...+..+..+..+|..++..| +|++|+..|.+++.+ .|.++ .++.++|.|+..+|+|+
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 105 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKN--EINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 345556777777888888777 788888888888877 55554 67777888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 89 RAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|+..++++++++|++..+++.+|.++.
T Consensus 106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~ 133 (198)
T 2fbn_A 106 KAIDHASKVLKIDKNNVKALYKLGVANM 133 (198)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 8888888888888877777777777653
No 50
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=1.2e-13 Score=90.46 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=86.3
Q ss_pred hhhHHhHHHHHHhcHHHH----------------HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAA----------------IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 77 (119)
++++..+.++..+.|.++ ..+..+|.+++..| +|++|+..+++++.+ +|.++.+++++
T Consensus 55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l 128 (198)
T 2fbn_A 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKL 128 (198)
T ss_dssp HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence 355666777777666554 88999999999999 999999999999999 99999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|.++..+|++++|+..++++++++|++..++..++.++
T Consensus 129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999888765
No 51
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=2.6e-13 Score=85.41 Aligned_cols=94 Identities=27% Similarity=0.316 Sum_probs=79.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|..+..+..+|.++...| +|++|+..+.+++.. +|.++.+++++|.++..+|++++|+..
T Consensus 30 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 45667778888888888888899999998888 899999999999998 888888899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhc
Q 033440 94 AEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~ 113 (119)
+++++.++|.+..++..++.
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 99999999988887754443
No 52
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=5.9e-14 Score=103.41 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=84.6
Q ss_pred hhhHHhHHHHHHhcHHH---------------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440 14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
+.++..+.+++.++|.. ...+.++|.++++.| +|++|+..|+++|.+ +|+++.+++++|
T Consensus 285 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~~g 358 (457)
T 1kt0_A 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRG 358 (457)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHH
Confidence 35666777777777766 799999999999999 999999999999999 999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|..+|+|++|+.+++++++++|++..++..++.++.
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 53
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=2.3e-13 Score=82.74 Aligned_cols=94 Identities=9% Similarity=0.005 Sum_probs=84.1
Q ss_pred ChhhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcC
Q 033440 13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~ 86 (119)
.++++..++.+...+|++. ..+..+|.+++..| +|++|+..|.+++.. .|++ +.+++++|.++..+|+
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--NFQLAEAQFRDLVSR----YPTHDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHcCC
Confidence 3467788888888888777 79999999999999 999999999999999 8888 8889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440 87 YRRAFTDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
+++|+..++++++..|++..+...+.
T Consensus 92 ~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 92 NTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 99999999999999999987766544
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.51 E-value=3.7e-14 Score=98.32 Aligned_cols=81 Identities=33% Similarity=0.467 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+..+|+.++..| +|++|+..|++++.. +|+++.+++++|.++..+|++++|+.+++++++++|++..+++
T Consensus 3 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3556677777777766 777777777777777 7777777777777777777777777777777777777777777
Q ss_pred HhhccCc
Q 033440 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
.+|.++.
T Consensus 77 ~lg~~~~ 83 (281)
T 2c2l_A 77 FLGQCQL 83 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.51 E-value=2.5e-13 Score=81.81 Aligned_cols=86 Identities=30% Similarity=0.388 Sum_probs=80.9
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+|..+..+..+|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..+.++++++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVE--NFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcchhhhHHHHHHHHHHHHcc--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 346788999999999999999 999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCc
Q 033440 105 VKVVILCSGSHP 116 (119)
Q Consensus 105 ~~a~~~~a~~~~ 116 (119)
+.+++.+|.++.
T Consensus 80 ~~~~~~~~~~~~ 91 (131)
T 2vyi_A 80 SKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 56
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.50 E-value=1.2e-13 Score=89.16 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=77.7
Q ss_pred hhhHHhHHHHHHhcHH------------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh---ccCCCcchHHHH----
Q 033440 14 ESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ---NVLSDSENSVLY---- 74 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~---- 74 (119)
+.++..+++++.++|+ ++..|.++|.++...| +|++|+..|+++|++ .-.-+|+++.+|
T Consensus 28 eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~ 105 (159)
T 2hr2_A 28 DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISAV 105 (159)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence 4677888888888887 3459999999999999 999999999999986 011157888899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 105 (119)
+++|.++..+|++++|+.+|+++++++|++.
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999999999998653
No 57
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=1.3e-13 Score=84.77 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=84.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..+..+...+|+++..+..+|.+++..| ++++|+..+.+++.+ +|.++.+++++|.++..+|++++|+..
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 46778889999999999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCC-----CHHHHHHhh
Q 033440 94 AEEALKLCPT-----NVKVVILCS 112 (119)
Q Consensus 94 ~~~al~l~p~-----~~~a~~~~a 112 (119)
++++++++|+ +......+.
T Consensus 100 ~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 100 LQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp HHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHChhHHHHHHHHHHHHHH
Confidence 9999999987 555544443
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=2.4e-13 Score=91.75 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=87.8
Q ss_pred ChhhHHhHHHHHHh----cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440 13 TESEKADLDAIAAL----KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 88 (119)
.++++..++++... +|..+..+..+|..++..| ++++|+..|.+++.. +|.++.++.++|.++..+|+++
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence 34566677777765 5788999999999999998 999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 89 RAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+..++++++++|++..+++.+|.++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 99999999999999999999999987743
No 59
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.50 E-value=4.4e-13 Score=96.60 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=87.5
Q ss_pred hhhHHhHHHHHH----------------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 033440 14 ESEKADLDAIAA----------------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77 (119)
Q Consensus 14 ~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 77 (119)
++++..+.+++. .+|..+..+.++|.++++.| +|++|+..+++++++ +|+++.+++++
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~l 313 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRR 313 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHh----CchhHHHHHHH
Confidence 345566666666 78889999999999999999 999999999999999 99999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|.++..+|++++|+.+++++++++|++..++..++.++
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998887664
No 60
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=3.5e-13 Score=79.90 Aligned_cols=81 Identities=35% Similarity=0.518 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
.+..+..+|..++..| ++++|+..|++++.. .|.++.++.++|.++..+|++++|+..++++++++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 4678899999999999 999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhhccCc
Q 033440 110 LCSGSHP 116 (119)
Q Consensus 110 ~~a~~~~ 116 (119)
.+|.++.
T Consensus 77 ~~a~~~~ 83 (118)
T 1elw_A 77 RKAAALE 83 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998774
No 61
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.49 E-value=3.9e-14 Score=84.10 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=66.6
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.+|+++..+..+|..++..| +|++|+..|++++++ +|+++.+++++|.++..+|++++|+..+++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD--NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 36788999999999999999 999999999999999 9999999999999999999999999999999999774
No 62
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=84.30 Aligned_cols=85 Identities=33% Similarity=0.488 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.|....++..+|..++..| ++++|+..|++++.. .|.++.+++++|.++..+|++++|+..++++++++|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT--CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 3557889999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcC
Q 033440 107 VVILCSGSHPN 117 (119)
Q Consensus 107 a~~~~a~~~~~ 117 (119)
+++.+|.++..
T Consensus 86 ~~~~la~~~~~ 96 (133)
T 2lni_A 86 GYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988743
No 63
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=2.6e-13 Score=89.98 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH----------------HHHHHHHhcCHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN----------------RAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~a~~~~~l~~~~~A~~~ 93 (119)
.+..+..+|..++..| +|++|+..|++++.+ +|+++.+++. +|.++..+|++++|+..
T Consensus 3 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAG--QNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3567889999999999 999999999999999 9999999999 99999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.+++.+|.++.
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~ 99 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQV 99 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999998874
No 64
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.48 E-value=3.6e-14 Score=109.02 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=74.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++..++|+++.+++.+|..++..| ++++|+..|++++++ +|+++.+++++|.++..+|++++ +..
T Consensus 450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTG--DYDSATKHFTEVLDT----FPGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCChHH-HHH
Confidence 35666777777788888888888888888877 888888888888888 77777777777777777777777 777
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+++++++|++..+|+++|.++.
T Consensus 523 ~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 523 YQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHHHHHH
Confidence 77777777777777777777654
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=3.4e-13 Score=99.65 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=91.5
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh--------ChhcHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKK--------GKKHYSDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNL 82 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~ 82 (119)
++++..++++..++|+++..+..+|..+... | ++++|+..|++++.+ +| .++.+++++|.++.
T Consensus 196 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK--ISQQALSAYAQAEKV----DRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHH
Confidence 4677889999999999999999999999998 8 999999999999999 89 99999999999999
Q ss_pred HhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 83 LLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+|++++|+..++++++++|++..++..++.++.
T Consensus 270 ~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303 (474)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999987653
No 66
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.47 E-value=2.2e-13 Score=82.02 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=78.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
..+..++++...+|+++..+..+|..++..| ++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE--QFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567888888999999999999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 033440 95 EEALKLCPT 103 (119)
Q Consensus 95 ~~al~l~p~ 103 (119)
+++++++|.
T Consensus 77 ~~al~~~~~ 85 (115)
T 2kat_A 77 ESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999999884
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=6.9e-13 Score=83.39 Aligned_cols=83 Identities=31% Similarity=0.422 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+..+..+|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus 11 ~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 11 KRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 46788999999999999 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhccCcC
Q 033440 109 ILCSGSHPN 117 (119)
Q Consensus 109 ~~~a~~~~~ 117 (119)
+.+|.++..
T Consensus 85 ~~~a~~~~~ 93 (166)
T 1a17_A 85 YRRAASNMA 93 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988743
No 68
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=1e-13 Score=98.57 Aligned_cols=85 Identities=21% Similarity=0.155 Sum_probs=56.9
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-----------------HHHHHHHHHHHHhcCHH
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-----------------VLYANRAHVNLLLGNYR 88 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~a~~~~~l~~~~ 88 (119)
..+..+..+..+|+.+++.| +|++|+..|.+++.+ .|.+. .+++++|.|+.++|+|+
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEE--KLEEAMQQYEMAIAY----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSS--CCHHHHHHHHHHHHH----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 34555666667777777666 677777777777766 66555 26666777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 89 RAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|+.+|+++++++|++..+|+++|.+|.
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~ 275 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKA 275 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777766654
No 69
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.47 E-value=9.3e-14 Score=106.76 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=90.7
Q ss_pred hhhHHhHHHHH--------HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 14 ESEKADLDAIA--------ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
+++++.++++. ..+|+++..+..+|..++..| ++++|+..|+++++. +|+++.+++++|.++..+|
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG--DVAKATRKLDDLAER----VGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC--CHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHcC
Confidence 46677788888 888999999999999999999 999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++|+.+|+++++++|++..+++.+|.++.
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999998874
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=4.9e-13 Score=94.19 Aligned_cols=98 Identities=16% Similarity=0.072 Sum_probs=92.0
Q ss_pred ChhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
.++++..++++..++|+ ++..+..+|..+...| ++++|+..|++++.. .|.++.++.++|.++..+|++++|
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG--EFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34677888888899998 8999999999999999 999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 91 FTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+..++++++++|+++.+++.+|.++.
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999998874
No 71
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=83.90 Aligned_cols=85 Identities=33% Similarity=0.432 Sum_probs=79.2
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
.++..+..+..+|..++..| +|++|+..|++++.. .|++ ..++.++|.++..+|++++|+..++++++++|
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCG--DYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 34567888999999999999 999999999999999 8887 89999999999999999999999999999999
Q ss_pred CCHHHHHHhhccCc
Q 033440 103 TNVKVVILCSGSHP 116 (119)
Q Consensus 103 ~~~~a~~~~a~~~~ 116 (119)
+++.+++.+|.++.
T Consensus 97 ~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 97 GDVKALYRRSQALE 110 (148)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998774
No 72
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.46 E-value=3.6e-13 Score=97.08 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------CCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------SDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
...+..+..+|+.+++.| +|++|+..|++++++.+. ..|.++.++.++|.|+.++|+|++|+.+|+
T Consensus 220 ~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 446788999999999999 999999999999982111 178889999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHhhccCcC
Q 033440 96 EALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++|+++.+++++|.+|..
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~ 319 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQG 319 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=1.2e-12 Score=78.79 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=90.1
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...+..+...+|.....+..+|..+...| ++++|+..+.+++.. .|.++.++.++|.++...|++++|+..
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 91 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEY 91 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 46677788888888888999999999999998 999999999999999 899999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCcC
Q 033440 94 AEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++++...|.+..+++.+|.++..
T Consensus 92 ~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 92 YQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999887643
No 74
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.45 E-value=5.4e-13 Score=98.89 Aligned_cols=96 Identities=26% Similarity=0.303 Sum_probs=91.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++++.++++..++|+.+..+..+|.++.+.| +|++|+..|++++++ +|.++.+++++|.++..+|++++|+.
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 457888999999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhcc
Q 033440 93 DAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~ 114 (119)
.++++++++|++..++..++.+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999888888766
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.1e-12 Score=83.14 Aligned_cols=97 Identities=19% Similarity=0.074 Sum_probs=84.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++.+...+|.....+..+|..++..| ++++|+..+.+++.. .|.++.++..+|.++..+|++++|+..
T Consensus 59 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 59 DRGTELLERSLADAPDNVKVATVLGLTYVQVQ--KYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 45667777888888888888999999999988 899999999999998 888888999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++.+|+++.+++.+|.++.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHH
Confidence 99999999999988888887764
No 76
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=3.1e-13 Score=81.56 Aligned_cols=82 Identities=27% Similarity=0.324 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC----
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---- 104 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---- 104 (119)
+.+..+..+|..++..| ++++|+..|.+++.. .|.++.++.++|.++..+|++++|+..+++++.+.|++
T Consensus 2 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 46788999999999998 999999999999999 99999999999999999999999999999999999877
Q ss_pred ---HHHHHHhhccCc
Q 033440 105 ---VKVVILCSGSHP 116 (119)
Q Consensus 105 ---~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 76 ~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 76 RQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999998764
No 77
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.45 E-value=3e-13 Score=101.30 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=43.2
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++...+|+++..+..+|..++..| ++++|+..|++++++ +|+++.++.++|.++..+|++++|+..++
T Consensus 8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMG--DTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------CCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444555555555555555555554 555555555555555 55555555555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHhhccC
Q 033440 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++|++..+++.+|.++
T Consensus 82 ~al~~~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 55555555555555555444
No 78
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=4.4e-13 Score=81.52 Aligned_cols=80 Identities=13% Similarity=0.060 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---H
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---V 105 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~ 105 (119)
..+..+|..++..| +|++|+..|.+++.. .|+++ .+++.+|.++..+|++++|+..++++++.+|++ +
T Consensus 3 ~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 3 RTAYNVAFDALKNG--KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence 45678999999999 999999999999999 77777 799999999999999999999999999999999 8
Q ss_pred HHHHHhhccCcC
Q 033440 106 KVVILCSGSHPN 117 (119)
Q Consensus 106 ~a~~~~a~~~~~ 117 (119)
.+++.+|.++..
T Consensus 77 ~~~~~la~~~~~ 88 (129)
T 2xev_A 77 GGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=3.7e-13 Score=99.41 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL--------- 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l--------- 84 (119)
++++..++++.+++|+++.++..+|.+++..| ++++|+..|++++++ +|+ +.++.++|.++..+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--DVTSAHTCFSGALTH----CKN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC-HHHHHHHHHHHHHhccCChhhhh
Confidence 67888999999999999999999999999998 999999999999999 888 69999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|++++|+..++++++++|+++.+|+.+|.++..
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS 225 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
No 80
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=1.7e-12 Score=78.19 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=86.2
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-------HHHHHHHHHHHHHhc
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~ 85 (119)
.++++..+.++...+|..+..+..+|..++..| ++++|+..+.+++.. .|.+ +.+++++|.++..+|
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~ 93 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYFKEE 93 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----ccccchhHHHHHHHHHHHHHHHHHhc
Confidence 356778888999999999999999999999999 999999999999999 6666 889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++|+..++++++++| +...+..++.+.
T Consensus 94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 99999999999999999 677777776543
No 81
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.44 E-value=1.1e-12 Score=76.70 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=65.3
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
..+|..++..| ++++|+..|+++++. +|+++. +++++|.++..+|++++|+..++++++++|++..++
T Consensus 4 ~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQG--DIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 56899999998 999999999999999 999999 999999999999999999999999999999999887
No 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.43 E-value=1.5e-12 Score=91.31 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=90.6
Q ss_pred hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++++..++++...+|+ .+..+..+|..+...| ++++|+..|++++.+ .|.++.++.++|.++..+|++++|+
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3566778888888998 8999999999999999 999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
..++++++++|+++.+++.+|.++.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999998874
No 83
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=4.6e-13 Score=95.15 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=60.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++..++|+++..+..+|..+...| ++++|+..|+++++. .|+++.++.++|.++...|++++|+..+
T Consensus 289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 289 EAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555556666666666666666655 666666666666666 6666666666666666666666666666
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|+++.+++.+|.++
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHhHHHHH
Confidence 666666666666666666554
No 84
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.43 E-value=4e-13 Score=95.49 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=75.1
Q ss_pred ChhhHHhHHHHHHhcHHHH-----------------HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHH
Q 033440 13 TESEKADLDAIAALKESAA-----------------IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYA 75 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 75 (119)
.++++..+.++..+.|.+. ..+.++|.++++.| +|++|+..|+++|.+ +|+++.+++
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~ 268 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTE----EEKNPKALF 268 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT--CCHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHH
Confidence 4567778888888888876 48999999999999 999999999999999 999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 76 NRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++|.++..+|+|++|+.+++++++++|++..++..++.+.
T Consensus 269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 269 RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888763
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=7.9e-13 Score=98.98 Aligned_cols=99 Identities=13% Similarity=0.020 Sum_probs=92.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++++..++|+++..+..+|..+...| ++++|+..|++++++ +|+++.+++++|.++..+|++++|+.
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--RHAEAAVLLQQASDA----APEHPGIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346778888899999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.++++++++|++..+++.+|.++..
T Consensus 113 ~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 113 AYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 86
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=1.5e-12 Score=92.42 Aligned_cols=96 Identities=24% Similarity=0.226 Sum_probs=63.6
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..+.++..++|+++..+..+|..+...| ++++|+..|++++++ .|+++.++.++|.++...|++++|+..
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAIDTYRRAIEL----QPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555556666666666666666666666666 666666666666666 666666666666666666666666666
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|+++.++..+|.++
T Consensus 294 ~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 294 YNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhCcccHHHHHHHHHHH
Confidence 6666666666666666666554
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.42 E-value=1.8e-12 Score=90.32 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=76.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHH--HHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKG--NEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
.+++.+.++++...+|+........+ +.+...| ++++|+..|+++++. .|+++.+++++|.++..+|++++|
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~--~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE--KLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 35666777888777877554333333 2233335 899999999999998 888999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 91 FTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 91 ~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..++++++++|+++.+++++|.++
T Consensus 220 ~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 220 EGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999998888765
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=5.7e-13 Score=90.45 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=53.2
Q ss_pred hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH--------
Q 033440 15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-------- 83 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-------- 83 (119)
+++..++.+...+|++ +.++..+|.+++..| +|++|+..|++++...|. +|..+.+++.+|.|+..
T Consensus 33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~ 109 (261)
T 3qky_A 33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI-DPRVPQAEYERAMCYYKLSPPYELD 109 (261)
T ss_dssp HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHHhccccccc
Confidence 4445555555555555 566666666666666 666666666666666222 22344556666666666
Q ss_pred hcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 84 LGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+|++++|+..++++++..|++..+.
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred chhHHHHHHHHHHHHHHCcCchhHH
Confidence 6666666666666666666554433
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.41 E-value=1.3e-12 Score=93.99 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=78.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
+......+..+...+|.++..+..+|..+++.| ++++|+..|++++.. +|.++.+++.+|.++..+|++++|+.
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 81 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAG--QLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 81 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHH
Confidence 334556677777889999999999999999988 999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|++..+++.+|.++.
T Consensus 82 ~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 82 DLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999988764
No 90
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.8e-12 Score=85.43 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=91.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++...+|+++..+..+|..+...| ++++|+..+++++.. .|+++.++..+|.++..+|++++|+.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356778899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhC------CCCHHHHHHhhccC
Q 033440 93 DAEEALKLC------PTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~------p~~~~a~~~~a~~~ 115 (119)
.++++++++ |++..++..++.++
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999999999 99999998888765
No 91
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=1e-12 Score=86.21 Aligned_cols=94 Identities=21% Similarity=0.198 Sum_probs=81.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++. ++ .+..+..+|.+++..| ++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+..+
T Consensus 24 ~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 24 GALDAFSAVQ--DP-HSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp HHHHHHHTSS--SC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHc--CC-ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcccHHHHHHHH
Confidence 3444444442 33 5779999999999999 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCH----------------HHHHHhhccCcC
Q 033440 95 EEALKLCPTNV----------------KVVILCSGSHPN 117 (119)
Q Consensus 95 ~~al~l~p~~~----------------~a~~~~a~~~~~ 117 (119)
++++++.|.+. .+++.+|.++..
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 99999888776 999999987743
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=2.6e-12 Score=76.67 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
+..+..+|..++..| ++++|+..|.+++.. .|.++.++..+|.++...|++++|+..++++++.+|++..+++.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 788999999999998 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhccCc
Q 033440 111 CSGSHP 116 (119)
Q Consensus 111 ~a~~~~ 116 (119)
+|.++.
T Consensus 83 la~~~~ 88 (125)
T 1na0_A 83 LGNAYY 88 (125)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 93
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=3.8e-12 Score=84.36 Aligned_cols=92 Identities=25% Similarity=0.247 Sum_probs=43.2
Q ss_pred HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+..++++...+|.....+..+|..+...| ++++|+..+.+++.. .|.++.++..+|.++..+|++++|+..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 77 LAFYDKALELDSSAATAYYGAGNVYVVKE--MYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344444444444444444444444444 444444444444444 444444444444444444444444444444
Q ss_pred HHhhCCCCHHHHHHhhcc
Q 033440 97 ALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 97 al~l~p~~~~a~~~~a~~ 114 (119)
+++++|++..+++.+|.+
T Consensus 151 ~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 151 AVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHH
Confidence 444444444444444443
No 94
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=1.8e-12 Score=90.88 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=91.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+.++..++|+++..+..+|..+...| ++++|+..|++++.+ .|.++.++.++|.++..+|++++|+.
T Consensus 233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 356778888889999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCC-----------HHHHHHhhccCc
Q 033440 93 DAEEALKLCPTN-----------VKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~-----------~~a~~~~a~~~~ 116 (119)
.+++++.++|++ ..+|..+|.++.
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 999999999988 889999988763
No 95
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.40 E-value=1.7e-12 Score=76.38 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=81.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh-cCHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-GNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-~~~~~ 89 (119)
.++++..++++...+|.....+..+|..++..| ++++|+..+++++.. .|. ++.++.++|.++..+ |++++
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--RYEEAVDCYNYVINV----IEDEYNKDVWAAKADALRYIEGKEVE 95 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----SCCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccchHHHHHHHHHHHHHHhCCHHH
Confidence 356778899999999999999999999999999 999999999999999 999 999999999999999 99999
Q ss_pred HHHHHHHHHhhCCCC
Q 033440 90 AFTDAEEALKLCPTN 104 (119)
Q Consensus 90 A~~~~~~al~l~p~~ 104 (119)
|+..+++++..+|.+
T Consensus 96 A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 96 AEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999999975
No 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.39 E-value=3.6e-12 Score=87.61 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=91.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++.+...+|..+..+..+|..+...| ++++|+..+.+++.. .|.++.++.++|.++...|++++|+..
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSN--NYDSAAANLRRAVEL----RPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667788888889999999999999999999 999999999999999 999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHhhccCcC
Q 033440 94 AEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++++++|++..+++.+|.++..
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987743
No 97
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=2.4e-12 Score=85.37 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=46.4
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...++++...+|.....+..+|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+..++
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLE--QPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444444444445555555555544 555555555555555 44444445555555555555555555555
Q ss_pred HHHhhCCCCHHHHHHhhccC
Q 033440 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
++++.+|++..+++.+|.++
T Consensus 184 ~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHH
Confidence 55555554444444444443
No 98
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=5e-12 Score=85.22 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=85.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++...+|.++..+..+|..+...| ++++|+..|.+++.+ .|.++.++.++|.++..+|++++|+.
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHH
Confidence 346778888999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhh
Q 033440 93 DAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a 112 (119)
.++++++++|++...+...+
T Consensus 133 ~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 133 DLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHH
Confidence 99999999999986554433
No 99
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=4.5e-12 Score=84.82 Aligned_cols=94 Identities=18% Similarity=0.143 Sum_probs=44.7
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh--hccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+...++++...+|.....+..+|..++..| ++++|+..+.+++. . .|.++.++.++|.++..+|++++|+..
T Consensus 90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 90 ADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEASQDTL----YPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTCTT----CTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhCcc----CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333344444444444444444444444444 44444444444444 3 444444455555555555555555555
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++.+|.+..+++.+|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 164 FEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHH
Confidence 5555555555444444444433
No 100
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=6.9e-12 Score=81.97 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=59.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHh--hccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
++...++++...+|.....+..+|..++.. | ++++|+..+++++. . .|.++.++.++|.++...|++++|+
T Consensus 60 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 60 KAQESFRQALSIKPDSAEINNNYGWFLCGRLN--RPAESMAYFDKALADPT----YPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHTSTT----CSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCcC----CcchHHHHHHHHHHHHHcCCHHHHH
Confidence 445555555556666666666666666666 6 66666666666666 3 5555666666666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
..++++++.+|+++.+++.+|.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 134 AYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHH
Confidence 666666666666666666666554
No 101
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=1.2e-12 Score=82.95 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=86.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++.+...+|..+..+..+|..++..| ++++|+..+.+++.. .|.++.++.++|.++...|++++|+..+
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 99 (186)
T 3as5_A 26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTG--AVDRGTELLERSLAD----APDNVKVATVLGLTYVQVQKYDLAVPLL 99 (186)
T ss_dssp HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCccChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4555566666677888899999999999998 999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHhhccCc
Q 033440 95 EEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++..+|++..+++.+|.++.
T Consensus 100 ~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 100 IKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHHH
Confidence 9999999999999999988764
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.36 E-value=2.3e-12 Score=86.99 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=61.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++...+|+++..+..+|.+++..| ++++|+..+.+++.. +......+.++.++|.++..+|++++|+..
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT--CHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34556666666666666666666677666666 677777777666663 211112244466666666666666666666
Q ss_pred HHHHHhhCCCCHHHHHHhhccC
Q 033440 94 AEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++++++|+++.+++.+|.++
T Consensus 97 ~~~a~~~~~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 97 YQAAVDRDTTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHH
Confidence 6666666666666666666655
No 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.36 E-value=3.4e-12 Score=87.87 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=80.8
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++...+|+.+..+..+|..+...| ++++|+..|.+++.. .|.+...+..+|.++...|++++|+..
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVES--EHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45667777887888888888888888888888 888888888888888 888888888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|+++.+++.+|.++.
T Consensus 182 ~~~al~~~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 182 FSQALSIAPEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHH
Confidence 88888888888888888887664
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.36 E-value=6.4e-12 Score=82.34 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=83.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------CCcchHHHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------SDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~ 80 (119)
.++++..++++..++|..+..+..+|.+++..| ++++|+..|++++...|. ..|..+.+++++|.+
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 356778899999999999999999999999999 999999999999998332 123455999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 81 NLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+..+|++++|+..++++++++|++.......
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 9999999999999999999999775444433
No 105
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=4.9e-12 Score=84.65 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=53.8
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++...+|..+..+..+|..+...| ++++|+..|.+++.. .|.++.++.++|.++...|++++|+..+
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEM--EPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444455555555555555555555555555 555555555555555 5555555555555555555555555555
Q ss_pred HHHHh--hCCCCHHHHHHhhccC
Q 033440 95 EEALK--LCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~--l~p~~~~a~~~~a~~~ 115 (119)
++++. .+|.+..+++.+|.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHhCccCcccHHHHHHHHHHH
Confidence 55555 5555555555555544
No 106
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.35 E-value=4.1e-12 Score=87.31 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=91.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.+++...++.+...+|+++..+..+|..+...| ++++|+..+++++.. .|.++.++.++|.++..+|++++|+.
T Consensus 188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--RPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 356777888888999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCC------------CHHHHHHhhccCc
Q 033440 93 DAEEALKLCPT------------NVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~------------~~~a~~~~a~~~~ 116 (119)
.++++++++|+ +..++..+|.++.
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 99999999999 7889999888764
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.35 E-value=2.1e-12 Score=90.95 Aligned_cols=92 Identities=13% Similarity=-0.019 Sum_probs=71.7
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
++++..++++...+|+++..+..+|..++..| ++++|+..|++++.+ +|.++.++.++|.++..+|++++|+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 35566777777788888888888888888887 888888888888888 888888888888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHh
Q 033440 94 AEEALKLCPTNVKVVILC 111 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~ 111 (119)
++++++++|++..++..+
T Consensus 156 ~~~al~~~p~~~~~~~~~ 173 (365)
T 4eqf_A 156 LKNWIKQNPKYKYLVKNK 173 (365)
T ss_dssp HHHHHHHCHHHHCC----
T ss_pred HHHHHHhCccchHHHhhh
Confidence 888888888766655544
No 108
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=6.4e-12 Score=82.11 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=78.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-cCHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRAFT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~~ 92 (119)
++++..++.+...+|+.+..+..+|..+...| ++++|+..|.+++.. .|.++.++.++|.++... |++++|+.
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLK--VNDKAQESFRQALSI----KPDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 45667777777788888888888888888887 888888888888888 888888888888888888 88888888
Q ss_pred HHHHHHh--hCCCCHHHHHHhhccCc
Q 033440 93 DAEEALK--LCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~--l~p~~~~a~~~~a~~~~ 116 (119)
.++++++ .+|.+..+++.+|.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 8888888 56666778888777653
No 109
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=88.01 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=87.6
Q ss_pred hhhHHhHHHHHHhc---------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAALK---------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
+++...++++.... |..+..+..+|..+...| ++++|+..|++++.. .|+++.++.++|.++..+
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--KYAEALDYHRQALVL----IPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHh
Confidence 45666677776665 666789999999999999 999999999999999 999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|++++|+..++++++++|+++.++..++.++
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 110
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.34 E-value=7.3e-12 Score=84.95 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=85.3
Q ss_pred hhhHHhHHHHHHhcH---HHHHHHHHHHHHHHH--------hChhcHHHHHHHHHHHHhhccCCCcchHHHH--------
Q 033440 14 ESEKADLDAIAALKE---SAAIELKEKGNEYVK--------KGKKHYSDAIDCYTRAINQNVLSDSENSVLY-------- 74 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~--------~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-------- 74 (119)
++++..++++...+| ....+++.+|.+++. .| ++++|+..|++++.. .|+++.+.
T Consensus 69 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~ 142 (261)
T 3qky_A 69 LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDR----YPNHELVDDATQKIRE 142 (261)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHH----CcCchhHHHHHHHHHH
Confidence 467778888888866 567899999999999 88 999999999999999 77765555
Q ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHhhCCC---CHHHHHHhhccCc
Q 033440 75 ---------ANRAHVNLLLGNYRRAFTDAEEALKLCPT---NVKVVILCSGSHP 116 (119)
Q Consensus 75 ---------~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~a~~~~ 116 (119)
+++|.++..+|+|++|+..++++++..|+ .+.+++.+|.++.
T Consensus 143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 88999999999999999999999999998 5679999998775
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.34 E-value=2.6e-12 Score=88.95 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=81.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++++...+|+++..+..+|.++...| ++++|+..|++++.+ +|+++.+++++|.++..+|++++|+.
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA 93 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356788899999999999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 033440 93 DAEEALKLCPTN 104 (119)
Q Consensus 93 ~~~~al~l~p~~ 104 (119)
.++++++++|++
T Consensus 94 ~~~~al~l~p~~ 105 (281)
T 2c2l_A 94 NLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhCccc
Confidence 999999999865
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.34 E-value=5.9e-12 Score=80.73 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=82.4
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHH-HHHhChhcH--HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNE-YVKKGKKHY--SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
.++++..++++..++|.++..+..+|.. ++..| ++ ++|+..+.+++.. +|.++.+++++|.++..+|++++
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 133 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQAS--QHMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQANYAQ 133 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcccHHH
Confidence 3567788899999999999999999999 78888 98 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHH
Q 033440 90 AFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~ 108 (119)
|+..++++++++|++....
T Consensus 134 A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 134 AIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhhCCCCccHH
Confidence 9999999999999875443
No 113
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=4.8e-12 Score=85.41 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=51.6
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~ 94 (119)
+++..++++...+|..+..+..+|..++..| ++++|+..|++++.. .|.++.+++++|.+.+..+++++|+..+
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG--NFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT--CHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555 555555555555555 5555555555552222333555555555
Q ss_pred HHHHhhCCCCHHHHHHhhccC
Q 033440 95 EEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 95 ~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++|++..+++.+|.++
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARAN 186 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHH
Confidence 555555555555555555443
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=3.7e-12 Score=93.25 Aligned_cols=84 Identities=23% Similarity=0.467 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
.+..+..+..+|..+++.| +|++|+..|++++.. +|+++.++.++|.|+..+|++++|+..++++++++|+++.
T Consensus 21 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 94 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAK--NFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH
Confidence 3457899999999999999 999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHhhccCc
Q 033440 107 VVILCSGSHP 116 (119)
Q Consensus 107 a~~~~a~~~~ 116 (119)
+++.+|.++.
T Consensus 95 ~~~~la~~~~ 104 (537)
T 3fp2_A 95 ALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.33 E-value=9.9e-12 Score=90.31 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~ 108 (119)
+.+..+..+|+.+++.| +|++|+..|++++.. +| ++.++.++|.|+..+|++++|+..++++++++|++..++
T Consensus 4 ~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNK--KYDDAIKYYNWALEL----KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hhHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhc----Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence 46788888999999988 899999999999998 77 588888899999999999999999999999999999998
Q ss_pred HHhhccCcC
Q 033440 109 ILCSGSHPN 117 (119)
Q Consensus 109 ~~~a~~~~~ 117 (119)
+.+|.++..
T Consensus 77 ~~l~~~~~~ 85 (514)
T 2gw1_A 77 LRRASANEG 85 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887643
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.32 E-value=2.7e-11 Score=89.98 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=89.1
Q ss_pred ChhhHHhHHHHHHh------cHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 13 TESEKADLDAIAAL------KESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~------~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.+++.+.++++... +|+. +..+..+|..+.+.| ++++|+..|+++++. .|+++.++..+|.++...|
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--MYDAAIDALNQGLLL----STNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhC
Confidence 34566777777776 4443 789999999999999 999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..++++++++|+++.++..++.+|..
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999998864
No 117
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.31 E-value=4.2e-11 Score=71.66 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
+.....+|..+++.+ +|..|+..|.+|+...+.. .+..+.++.++|.|++++|++++|+..++++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~--~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456789999999998 9999999999999873221 24678899999999999999999999999999999999999
Q ss_pred HHHhh
Q 033440 108 VILCS 112 (119)
Q Consensus 108 ~~~~a 112 (119)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 87775
No 118
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.30 E-value=1.3e-11 Score=90.32 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=87.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..+..+...+|+++..+..+|..+...| ++++|+..|++++.. .|.++.++.++|.++..+|++++|+.
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--DYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456778888888889988999999999999988 999999999999999 88888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|+++.+++.+|.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999988887764
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=9.3e-12 Score=86.35 Aligned_cols=100 Identities=12% Similarity=-0.084 Sum_probs=70.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---------------------------- 65 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------- 65 (119)
+++...++++...+|+++.++..+|..+...| ++++|+..+++++...|.
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a 211 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQ 211 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence 45566677777778888888888888888777 777776555444322110
Q ss_pred --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--HHHHHHhhccC
Q 033440 66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN--VKVVILCSGSH 115 (119)
Q Consensus 66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~ 115 (119)
.+|+++.+++++|.++...|++++|+..++++++.+|++ ..++..++.++
T Consensus 212 l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 212 VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 067777777788888888888888888888888888777 66777776654
No 120
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.30 E-value=2e-11 Score=85.06 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=82.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH-HH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR-AF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~-A~ 91 (119)
.+++...++++...+|+++..+..+|.++.+.| ++++|+..|++++.+ +|+++.++.++|.++..+|++.+ +.
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~----~p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG--RWEAAEGVLQEALDK----DSGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 456777888888899999999999999999999 999999999999999 99999999999999999999987 56
Q ss_pred HHHHHHHhhCCCCHHHH
Q 033440 92 TDAEEALKLCPTNVKVV 108 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~ 108 (119)
..++++++++|+++.+.
T Consensus 256 ~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 256 RYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCChHHH
Confidence 78899999999998765
No 121
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.30 E-value=2.3e-11 Score=84.25 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++.+...+|+++..+..+|.+++..| ++++|+..+++++.. .|+++.++..+|.++..+|++++|+.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHH
Confidence 356778888888999999999999999999998 999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhhCC---CCHHHHHHhh
Q 033440 93 DAEEALKLCP---TNVKVVILCS 112 (119)
Q Consensus 93 ~~~~al~l~p---~~~~a~~~~a 112 (119)
.++++++++| ++..++..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 93 DFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccChHHHHHHHH
Confidence 9999999999 8888887774
No 122
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=7.9e-13 Score=98.02 Aligned_cols=83 Identities=31% Similarity=0.412 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
++.+..+..+|..+++.| +|++|+..|++++++ +|+++.++.++|.++..+|+|++|+..++++++++|++..+
T Consensus 3 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHHHTTSSSSSSSTTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 456778888999999998 999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhccCc
Q 033440 108 VILCSGSHP 116 (119)
Q Consensus 108 ~~~~a~~~~ 116 (119)
++++|.+|.
T Consensus 77 ~~~lg~~~~ 85 (477)
T 1wao_1 77 YYRRAASNM 85 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 123
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.29 E-value=4.5e-11 Score=82.79 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=71.2
Q ss_pred hhhHHhHHHHHHhcH---HHHHHHHHH------------HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440 14 ESEKADLDAIAALKE---SAAIELKEK------------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~------------g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a 78 (119)
+++...++.+...+| +....+..+ |..++..| ++++|+..+++++.. .|.++.++..+|
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~ 161 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--DYTAAITFLDKILEV----CVWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCchHHHHHHH
Confidence 345556666666667 666666655 57777777 778888888887777 777777777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777788888888888877777777777777776653
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=2.2e-11 Score=78.40 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=81.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-----------------------------
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----------------------------- 64 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----------------------------- 64 (119)
+++...++++...+|+++.++..+|..+...| ++++|+..+++++...|
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 100 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQE 100 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 45667778888889999999999999999988 88888877666544321
Q ss_pred -CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--HHHHHHhhccCc
Q 033440 65 -LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN--VKVVILCSGSHP 116 (119)
Q Consensus 65 -~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~~ 116 (119)
..+|+++.+++++|.++..+|++++|+..++++++++|++ ..+++.+|.++.
T Consensus 101 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 101 LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 0167888899999999999999999999999999999876 568888887653
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=2.7e-11 Score=80.87 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH-
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK- 106 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~- 106 (119)
+..++.+|..++..| +|++|+..|++++.. .|.+ ..+++.+|.+++.+|+|++|+..++++++.+|+++.
T Consensus 4 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDG--NWRQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 567899999999999 999999999999998 6654 578999999999999999999999999999998864
Q ss_pred --HHHHhhccCc
Q 033440 107 --VVILCSGSHP 116 (119)
Q Consensus 107 --a~~~~a~~~~ 116 (119)
+++.+|.++.
T Consensus 78 ~~a~~~~g~~~~ 89 (225)
T 2yhc_A 78 DYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 8999988764
No 126
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=4.3e-12 Score=76.79 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++|+..|++++++.+. +|+++.+++++|.++..+|+|++|+..++++++++|+++.+++.+|.++.
T Consensus 5 ~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp --CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 899999999999998111 28899999999999999999999999999999999999999999998874
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=3.5e-11 Score=83.43 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=81.6
Q ss_pred ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHH
Q 033440 13 TESEKADLDAIAALKESA------AIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~ 79 (119)
.++++..++++..+.+.. +..+..+|.++... | ++++|+..|++++++ .|.. ..++.++|.
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~----~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEW----YAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHH
Confidence 345677778877776653 67899999999996 9 999999999999999 5543 567999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhhCCCCHH-------HHHHhhccCc
Q 033440 80 VNLLLGNYRRAFTDAEEALKLCPTNVK-------VVILCSGSHP 116 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~~-------a~~~~a~~~~ 116 (119)
++..+|+|++|+..+++++++.|++.. +++++|.++.
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999987643 5777777664
No 128
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=5.3e-11 Score=85.48 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=86.9
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
.++++..++.+...+|+++..+..+|.+++..| ++++|+..|.+++.. +|+++.++..+|.++..+|++++|+.
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 346778888888899999999999999999999 999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCH---HHHHHhh
Q 033440 93 DAEEALKLCPTNV---KVVILCS 112 (119)
Q Consensus 93 ~~~~al~l~p~~~---~a~~~~a 112 (119)
.++++++++|++. .++..++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~ 138 (450)
T 2y4t_A 116 DFKKVLKSNPSENEEKEAQSQLI 138 (450)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999988 7776554
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=4.5e-11 Score=90.51 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=89.2
Q ss_pred CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc----------HHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
+.++++++.++.+..++|++..+|..+|.++...| + +++++..+++++.. +|.+..+|++|+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34667788899999999999999999999999887 6 99999999999999 99999999999999
Q ss_pred HHHhc--CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 81 NLLLG--NYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 81 ~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+.+++ +|++++..+.++++++|.|..+|..++.++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l 153 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 153 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence 99999 779999999999999999999999888654
No 130
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.26 E-value=9.9e-12 Score=80.10 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY----------RRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
.|++|+..|++++++ +|+++.++.++|.++..++++ ++|+..|+++|+++|++..+|+++|.+|..
T Consensus 17 ~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 899999999999999 999999999999999999875 599999999999999999999999998853
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=7.4e-11 Score=70.79 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
.++..+|..++..| ++++|+..+.+++.. .|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+
T Consensus 2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcC--cHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 46788999999998 999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hccCcC
Q 033440 112 SGSHPN 117 (119)
Q Consensus 112 a~~~~~ 117 (119)
|.++..
T Consensus 76 ~~~~~~ 81 (136)
T 2fo7_A 76 GNAYYK 81 (136)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887643
No 132
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.23 E-value=7e-11 Score=87.72 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=71.3
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
+++...++++..++|.+...+..+|..+.+.| ++++|+..|++++.. .|.++.++..+|.++.+.|++++|+..
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG--EHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT----TTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556666666667777777777777777777 777777777777777 777777777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHhhccCc
Q 033440 94 AEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 94 ~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++++++|.++.+|..+|.++.
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777776653
No 133
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=7.6e-11 Score=79.16 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=86.4
Q ss_pred ChhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHH
Q 033440 13 TESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHV 80 (119)
Q Consensus 13 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~ 80 (119)
.++++..++++..+ +|..+..+..+|..++..| ++++|+..|.+++.+.. ...|..+.++.++|.+
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 44566666666552 4889999999999999999 99999999999998731 1147788999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCcC
Q 033440 81 NLLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~~ 117 (119)
+..+|++++|+..+++++.+ +|....+++.+|.++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998 57778899999987754
No 134
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=5.3e-11 Score=79.47 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=82.6
Q ss_pred ChhhHHhHHHHHHhcHHHH---HHHHHHHHHHHH------------------hChhcHHHHHHHHHHHHhhccCCCcchH
Q 033440 13 TESEKADLDAIAALKESAA---IELKEKGNEYVK------------------KGKKHYSDAIDCYTRAINQNVLSDSENS 71 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~------------------~g~~~~~~A~~~~~~al~~~~~~~~~~~ 71 (119)
.++++..++++...+|++. .++..+|.+++. .| ++++|+..|++++.. .|+++
T Consensus 57 ~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~P~~~ 130 (225)
T 2yhc_A 57 LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ--QARAAFSDFSKLVRG----YPNSQ 130 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCH--HHHHHHHHHHHHHTT----CTTCT
T ss_pred HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH--HHHHHHHHHHHHHHH----CcCCh
Confidence 3567788888888888765 478899998886 45 899999999999999 77766
Q ss_pred HHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HHHHHhhccCcC
Q 033440 72 VLY-----------------ANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---KVVILCSGSHPN 117 (119)
Q Consensus 72 ~~~-----------------~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~a~~~~~ 117 (119)
.+. ..+|.+++..|++.+|+..++++++..|+++ .+++.+|.++..
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 433 6789999999999999999999999999986 679999888753
No 135
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.1e-10 Score=81.32 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=76.4
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH-------hChhcH-------HHHHHHHHHHHh-hccCCCcchHHHHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHY-------SDAIDCYTRAIN-QNVLSDSENSVLYANRA 78 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~a 78 (119)
++.+..+++++..+|.++..|...|..+.. .| ++ ++|+..|++++. + .|++..++.++|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHH
Confidence 345567888888888888888888888764 35 64 888888888888 7 788888888888
Q ss_pred HHHHHhcCHHHHHHHHHHHHhhCCCCHH-HHHHhhccC
Q 033440 79 HVNLLLGNYRRAFTDAEEALKLCPTNVK-VVILCSGSH 115 (119)
Q Consensus 79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~-a~~~~a~~~ 115 (119)
.++...|++++|+..|+++++++|.++. +|..+|.++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence 8888888888888888888888888775 777777654
No 136
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=6.5e-11 Score=79.48 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=86.1
Q ss_pred hhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHH
Q 033440 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~ 81 (119)
+++...+.++..+ +|..+..+..+|.++...| ++++|+..|.+++.+.. ..+|....++.++|.++
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4566666776655 5888999999999999999 99999999999998731 11478889999999999
Q ss_pred HHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCc
Q 033440 82 LLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~ 116 (119)
..+|++++|+..+++++++ +|....+++.+|.++.
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7777889999988764
No 137
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=1.8e-10 Score=80.20 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=83.0
Q ss_pred hhhHHhHHHHHH-hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH-HHHHHHHHHHHhcCHHHHH
Q 033440 14 ESEKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~ 91 (119)
+++...++++.. ++|+....|...|..+...| ++++|...|++++++ .|.++. ++.++|.++.+.|++++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 567888899888 79999999999999999988 999999999999999 888886 8999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHhhcc
Q 033440 92 TDAEEALKLCPTNVKVVILCSGS 114 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~ 114 (119)
..++++++++|.+..+|...+..
T Consensus 155 ~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 155 MIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999888887777665543
No 138
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.7e-11 Score=86.74 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=60.1
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH------HHHHHHHHHHH---h
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV------LYANRAHVNLL---L 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~a~~~~~---l 84 (119)
+++...++.+...+|..+..+..+|..+...| ++++|+..|.+++.. .|.++. ++.++|.++.. +
T Consensus 355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKN--DFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----hhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 34555556666666666666666666666666 666666666666666 444432 66666666666 6
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|++++|+..+++++.++|+++.+++.+|.++
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6666666666666666666666666666554
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=1.4e-10 Score=80.34 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH----
Q 033440 21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE---- 96 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~---- 96 (119)
..+...-|+....+..+|..+...| ++++|+..|++++.. +|+++.+++++|.++..+|++++|+..+++
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQES--NYTDALPLLXDAWQL----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCC--CHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344445888899999999999999 999999999999999 999999999999999999999988765554
Q ss_pred ------------------------------HHhhCCCCHHHHHHhhccCc
Q 033440 97 ------------------------------ALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 97 ------------------------------al~l~p~~~~a~~~~a~~~~ 116 (119)
++.++|++..+++.+|.++.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 46667777777777777653
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.15 E-value=3.7e-10 Score=79.77 Aligned_cols=100 Identities=15% Similarity=-0.031 Sum_probs=69.3
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH----HHh---
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLL--- 84 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l--- 84 (119)
.+++++..++.++.++|++..+|..+|.++...|++++++++..++.+|.. +|.+..+++.|+.++ ..+
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhcccc
Confidence 455667777777777777777777777777665412677777777777777 777777777777777 555
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++++++..+.++++.+|.|..+|+.++.++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl 154 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLV 154 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677777777777777777777776666543
No 141
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=2.1e-10 Score=79.46 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=71.8
Q ss_pred ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-------HHHHHHHH
Q 033440 13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-------VLYANRAH 79 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~ 79 (119)
.++++..++++..+.|.. +..+..+|..+...| +|++|+..|++++.+ .|.+. .++.++|.
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--QYIEASDIYSKLIKS----SMGNRLSQWSLKDYFLKKGL 207 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TSSCTTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----HhcCCcccHHHHHHHHHHHH
Confidence 457788888888887754 677899999999999 999999999999999 54433 37899999
Q ss_pred HHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 80 VNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
|+..+|++++|+..+++++.++|++...
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999999999999999987653
No 142
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.14 E-value=2.3e-10 Score=80.82 Aligned_cols=99 Identities=9% Similarity=-0.105 Sum_probs=91.1
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHH----HHh---ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEY----VKK---GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~---g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
..++++..++.++..+|+...+|..++.++ ... + ++++++..++++++. +|.+..++..|+.+...+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l 157 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF--DPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTF 157 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999 665 6 899999999999999 999999999999999999
Q ss_pred cCHH--HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 85 GNYR--RAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~--~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|.++ +++..+.++++.+|.|..||..++.++.
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9998 9999999999999999999999887653
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.5e-10 Score=87.62 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=92.6
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~ 91 (119)
.+++++.++.+...+|+...+|..++.++.+.++.+|++++..+++++++ +|.+..+|.+|+.+...+| .+++++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~----d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh----ccccccHHHHHHHHHHHcCCChHHHH
Confidence 45788899999999999999999999999998732459999999999999 9999999999999999999 999999
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+++.++++.+|.+..+|+.++.++.
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHH
Confidence 9999999999999999999998754
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.13 E-value=6.4e-10 Score=79.34 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=90.6
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFT 92 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~ 92 (119)
++++..++.+...+|++..+|..++.++...++.++++++..++++++. +|.|..++.+|+.+...+|. +++++.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4678889999999999999999999999998721389999999999999 99999999999999999999 699999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccC
Q 033440 93 DAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.+.++++.+|.|..+|..++.++
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999999998765
No 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=3.5e-10 Score=81.88 Aligned_cols=100 Identities=18% Similarity=0.075 Sum_probs=81.5
Q ss_pred hhhHHhHHHHHHh---------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHH
Q 033440 14 ESEKADLDAIAAL---------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHV 80 (119)
Q Consensus 14 ~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~ 80 (119)
+++++.++++..+ +|..+..+.++|.+++..| ++++|+.+|++++.+.+. ..+..+.++.++|.+
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 4566667776655 4555778899999999999 999999999999987332 145677889999998
Q ss_pred HHHhc--CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 81 NLLLG--NYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 81 ~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+..+| +|++|+..|+++++++|+++.+++.+|.++
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88765 699999999999999999999998887654
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.12 E-value=6.3e-10 Score=79.37 Aligned_cols=100 Identities=9% Similarity=-0.038 Sum_probs=92.2
Q ss_pred CCCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc----------HHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440 10 EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YSDAIDCYTRAINQNVLSDSENSVLYANRAH 79 (119)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~ 79 (119)
.+.+++++..++.++.++|++..+|..++.++...+ . +++++..++.++.. +|.+..+++.|+.
T Consensus 43 ~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~--~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~w 116 (331)
T 3dss_A 43 GELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCW 116 (331)
T ss_dssp TCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhc--ccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 355778899999999999999999999999998876 4 78999999999999 9999999999999
Q ss_pred HHHHhcC--HHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 80 VNLLLGN--YRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 80 ~~~~l~~--~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++..+++ +++++..+.++++.+|.|..+|..++.++
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999994 99999999999999999999999988654
No 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=2.8e-10 Score=82.37 Aligned_cols=98 Identities=10% Similarity=-0.017 Sum_probs=82.0
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC--hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKG--KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++++.+.++..++|+++..+..+|..+...+ .+++++|+..|++++.. +|.++.++.++|.++...|++++|+.
T Consensus 193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHH
Confidence 4667777888888888888888877665432 12778899999999999 99999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHhhccCc
Q 033440 93 DAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.++++++++|++..+++.+|.+|.
T Consensus 269 ~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 269 LLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999999999998763
No 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=5.1e-10 Score=79.62 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=77.3
Q ss_pred hhhHHhHHHHHHh-------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l 84 (119)
++++..+.++..+ .+..+..+..+|.++...| +|++|+..|.+++.+.+.. .+....++.++|.++..+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 3455556666655 5666778889999999988 9999999999999873321 223346888899999999
Q ss_pred cCHHHHHHHHHHHHh-----hC-CCCHHHHHHhhccCc
Q 033440 85 GNYRRAFTDAEEALK-----LC-PTNVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~-----l~-p~~~~a~~~~a~~~~ 116 (119)
|++++|+..++++++ .+ |....+++.+|.++.
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 275 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 999999999999988 46 777888888888764
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=6.3e-10 Score=79.87 Aligned_cols=100 Identities=10% Similarity=-0.021 Sum_probs=92.7
Q ss_pred CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-c-CHH
Q 033440 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-G-NYR 88 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~-~~~ 88 (119)
+.++++++.++.++.++|++..+|..++.++...|+ ++++++..++.+|.. +|.+..+++.|+.++..+ + +++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCChH
Confidence 356789999999999999999999999999999872 499999999999999 999999999999999998 8 999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 89 RAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 89 ~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
+++..+.++++.+|.|..+|..++.++
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl 169 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999887654
No 150
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=4.3e-11 Score=77.03 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
||+....+..+|..++..| ++++|+..|++++.. +|+++.+++++|.++...|++++|+..+++++..+| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQG--EHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 3445567888999999999 999999999999999 999999999999999999999999998888888877 665
Q ss_pred HHHHhh
Q 033440 107 VVILCS 112 (119)
Q Consensus 107 a~~~~a 112 (119)
.+...+
T Consensus 75 ~~~~~~ 80 (176)
T 2r5s_A 75 YKSLIA 80 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 151
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.10 E-value=8.5e-10 Score=70.54 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=72.4
Q ss_pred HhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 25 ALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
+.++.+.++.++.|+++.+.. +.+.++++..++..+.. + | .+..++|++|..++++|+|++|+..++++|+++
T Consensus 26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345667899999999999865 23566999999999999 7 7 678999999999999999999999999999999
Q ss_pred CCCHHHHHHh
Q 033440 102 PTNVKVVILC 111 (119)
Q Consensus 102 p~~~~a~~~~ 111 (119)
|+|..+...+
T Consensus 102 P~n~QA~~Lk 111 (152)
T 1pc2_A 102 PQNNQAKELE 111 (152)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999887654
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=1e-10 Score=80.85 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=80.9
Q ss_pred hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CCCcchHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l 84 (119)
++++..+.++..+.+ ..+..+..+|.+++..| +|++|+.+|.+++.... ...+..+.+++++|.+|..+
T Consensus 132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 456666777665421 23557999999999999 99999999999996422 22456667999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCC------HHHHHHhhccCcC
Q 033440 85 GNYRRAFTDAEEALKLCPTN------VKVVILCSGSHPN 117 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~ 117 (119)
|+|++|+..+++++++.+.. ..+++.+|.++..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999986543 7889999988753
No 153
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.08 E-value=5.7e-10 Score=66.82 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
+|+..|.+++.. +|+++.+++++|.++...|++++|+..++++++++|++..+|+.+|.++.
T Consensus 3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 578999999999 99999999999999999999999999999999999999999999998874
No 154
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=74.40 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=85.0
Q ss_pred hhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHH
Q 033440 14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVN 81 (119)
Q Consensus 14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~ 81 (119)
+++...++++..+ ++..+..+..+|..+...| ++++|+..+.+++.+.. ...|....++.++|.++
T Consensus 86 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3455666666655 5888999999999999999 99999999999998721 11477889999999999
Q ss_pred HHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCc
Q 033440 82 LLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~ 116 (119)
..+|++++|+..+++++++ +|....+++.+|.++.
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 7777888888888764
No 155
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.04 E-value=9.1e-10 Score=64.87 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 27 KESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
+|+++..+..+|..++..+ +....+|...+.+++.+ +|+++.+.+.+|..++..|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567888999999997655 11279999999999999 99999999999999999999999999999999999974
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=5.1e-10 Score=77.32 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=75.8
Q ss_pred hhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc----hHHHHHHHHHHHHHh
Q 033440 15 SEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLLL 84 (119)
Q Consensus 15 ~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~l 84 (119)
+++..+.++..+. ...+.++..+|..+...| +|++|+..|.+++.+... .|+ ...+++++|.+|..+
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHHH
Confidence 4555555554332 223678999999999998 999999999999954211 333 236899999999999
Q ss_pred cCHHHHHHHHHHHHhhCCC------CHHHHHHhhccCc
Q 033440 85 GNYRRAFTDAEEALKLCPT------NVKVVILCSGSHP 116 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~------~~~a~~~~a~~~~ 116 (119)
|+|++|+..+++++++.+. ...+++.+|.++.
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987643 2678888888774
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=1.5e-09 Score=71.98 Aligned_cols=96 Identities=6% Similarity=-0.118 Sum_probs=82.9
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHH--
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLL-- 83 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~-- 83 (119)
-.++++..+.++. ++.++.++..+|..+.. .+ ++++|+..|+++++. .| .++.+++++|.+|..
T Consensus 68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~--d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGAT--DVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCC
Confidence 3556777777764 45678899999999987 77 999999999999999 77 469999999999999
Q ss_pred --hcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 84 --LGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 84 --l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
.+++++|+..+++++++ |.++.+++.+|.+|.
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 88999999999999999 778889999998874
No 158
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=3.3e-10 Score=77.24 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=80.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
......+|..+..+..+|..++..| ++++|+..+++++.+... ..|..+.++..+|.++..+|++++|+..+++
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3334457888999999999999999 999999999999984211 1678889999999999999999999999999
Q ss_pred HHhh--------CCCCHHHHHHhhccCcC
Q 033440 97 ALKL--------CPTNVKVVILCSGSHPN 117 (119)
Q Consensus 97 al~l--------~p~~~~a~~~~a~~~~~ 117 (119)
++.+ +|....+++.+|.++..
T Consensus 95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 95 ALAIREKTLGKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9987 46667888888887653
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=8.3e-11 Score=69.37 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=70.7
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHHHHHHhcC
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~ 86 (119)
.++++..++++..++|.++..+..+|.+++..| +|++|+..|++++.+ +|++ ..+++++|.++..+|+
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--EYTQAIQMCQQGLRY----TSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 357888899999999999999999999999999 999999999999999 8888 8899999999999999
Q ss_pred HHHHHHHHHH
Q 033440 87 YRRAFTDAEE 96 (119)
Q Consensus 87 ~~~A~~~~~~ 96 (119)
+++|+..+++
T Consensus 94 ~~~a~~~~~~ 103 (111)
T 2l6j_A 94 VQIPVVEVDE 103 (111)
T ss_dssp CCCCSSSSSS
T ss_pred HhhhHhHHHH
Confidence 8888776554
No 160
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.00 E-value=1.6e-09 Score=75.50 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=68.2
Q ss_pred hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhc
Q 033440 14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~ 85 (119)
++++..++++..+.+ ..+..+..+|.++.. | ++++|+..|++++++.+... +....++.++|.++..+|
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 456666666665532 346778888888877 7 88888888888888722210 112567888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
+|++|+..+++++++.|.+ ..+++.+|.++.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 8888888888888876543 235666665553
No 161
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=3.4e-09 Score=75.40 Aligned_cols=100 Identities=16% Similarity=0.015 Sum_probs=75.9
Q ss_pred hhHHhHHHHHHh-------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440 15 SEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 15 ~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
.++..+.++..+ .+..+..+..+|.++...| +|++|+..|.+++.+.+.. .+....++.++|.++..+|
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 444555555543 2346778888999999988 9999999999999863321 2234568888999999999
Q ss_pred CHHHHHHHHHHHHh-----hCCCCHHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALK-----LCPTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~-----l~p~~~~a~~~~a~~~~ 116 (119)
++++|+..++++++ .+|....+++.+|.++.
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 99999999999988 67777888888888764
No 162
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.96 E-value=9.1e-09 Score=73.12 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=78.1
Q ss_pred hhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-C-cchHHHHHHHHHHHHHhc
Q 033440 14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-D-SENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~a~~~~~l~ 85 (119)
+++...+.++..+. +..+..+..+|.++...| ++++|+..|.+++.+.+.. + |..+.++.++|.++..+|
T Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 278 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence 45666666666553 344578999999999999 9999999999999942221 5 888999999999999999
Q ss_pred CHHHHHHHHHHHHhhC-----CCCHHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALKLC-----PTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~-----p~~~~a~~~~a~~~~ 116 (119)
++++|+..+++++++. |.....+..+|.++.
T Consensus 279 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999984 333333444555543
No 163
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.96 E-value=5.7e-10 Score=64.94 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=70.3
Q ss_pred ChhhHHhHHHHHHhcHHHHH-HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440 13 TESEKADLDAIAALKESAAI-ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
.++++..++++...+|+++. .+..+|.+++..| ++++|+..|.+++.+ +|+++.++.+ +.+.+++
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~--------~~~~~a~ 81 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--DWQKALNNYQSAIEL----NPDSPALQAR--------KMVMDIL 81 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHH--------HHHHHHH
Confidence 35678889999999999999 9999999999999 999999999999999 9999888754 7788999
Q ss_pred HHHHHHHhhCCCCH
Q 033440 92 TDAEEALKLCPTNV 105 (119)
Q Consensus 92 ~~~~~al~l~p~~~ 105 (119)
..+++++.++|++.
T Consensus 82 ~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 82 NFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHCCTTHHHHCCS
T ss_pred HHHHHHhccCcccc
Confidence 99999999888764
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=8.5e-09 Score=69.93 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhC
Q 033440 30 AAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 30 ~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~ 101 (119)
++.++..+|..+.. .+ ++++|+..|.++++. . ++.+++++|.++.. .+++++|+..++++++.+
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDL----N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 108 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence 34455555555555 55 555555555555554 2 44455555555555 555555555555555442
Q ss_pred CCCHHHHHHhhccC
Q 033440 102 PTNVKVVILCSGSH 115 (119)
Q Consensus 102 p~~~~a~~~~a~~~ 115 (119)
++.+++.+|.+|
T Consensus 109 --~~~a~~~lg~~~ 120 (273)
T 1ouv_A 109 --YAEGCASLGGIY 120 (273)
T ss_dssp --CHHHHHHHHHHH
T ss_pred --CccHHHHHHHHH
Confidence 445555555443
No 165
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.94 E-value=3.2e-09 Score=74.78 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+..+..+|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|++++|+..+++++.+.|..
T Consensus 183 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 5667788999999999998 9999999999999883331 12233488999999999999999999999999887655
Q ss_pred ------HHHHHHhhccCc
Q 033440 105 ------VKVVILCSGSHP 116 (119)
Q Consensus 105 ------~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 261 ~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHH
Confidence 667778877664
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.94 E-value=7.9e-09 Score=63.59 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=75.8
Q ss_pred hhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440 14 ESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
++++..+.++..+.++. +..+..+|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 103 (164)
T 3ro3_A 26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 45666666666655443 358899999999999 9999999999999873321 1223678999999999999
Q ss_pred CHHHHHHHHHHHHhhCC------CCHHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALKLCP------TNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p------~~~~a~~~~a~~~~ 116 (119)
++++|+..+++++++.+ ....+++.+|.++.
T Consensus 104 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 99999999999998742 12456677776653
No 167
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.92 E-value=3.4e-09 Score=75.33 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS----VLYANRAHVNLLLGNYRRAFTDAEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
++..+..+..+|..++..| ++++|+..|++++.+ .|.++ .++..+|.++..+|++++|+..+++++.+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAG--DCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3566777788888888887 888888888888888 66654 57788888888888888888888888877
Q ss_pred ----CCCCHHHHHHhhccCc
Q 033440 101 ----CPTNVKVVILCSGSHP 116 (119)
Q Consensus 101 ----~p~~~~a~~~~a~~~~ 116 (119)
+|....+++.+|.++.
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHH
Confidence 5666777777777654
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.92 E-value=2.4e-09 Score=76.10 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred hhhHHhHHHHHHhcHHHH----HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCH
Q 033440 14 ESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
++++..++++..++|++. ..+..+|..++..| ++++|+..|.+++.+... ..|....++.++|.++..+|++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence 456667777777776644 68999999999999 999999999999987322 1367788999999999999999
Q ss_pred HHHHHHHHHHHhh------CCCCHHHHHHhhccCc
Q 033440 88 RRAFTDAEEALKL------CPTNVKVVILCSGSHP 116 (119)
Q Consensus 88 ~~A~~~~~~al~l------~p~~~~a~~~~a~~~~ 116 (119)
++|+..+++++++ .|....+++.+|.++.
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 9999999999998 5666778888887764
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=3.3e-09 Score=76.15 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=92.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH---
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR--- 88 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~--- 88 (119)
.++++..++.++..+|+...+|..++.++... + .++++++..+.++++. +|.+..++..|+.+...+|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~ 179 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRIS 179 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-SCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccc
Confidence 46789999999999999999999999999886 2 1689999999999999 9999999999999999999988
Q ss_pred -----HHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 89 -----RAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 89 -----~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+++..+.++++.+|.|..||..++.++..
T Consensus 180 ~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 180 EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999887643
No 170
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.90 E-value=2.4e-08 Score=67.65 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=56.9
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hc
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~ 85 (119)
++++..++++...+ ++.++..+|..+.. .+ ++++|+..|+++++. . ++.+++++|.++.. .+
T Consensus 59 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 59 KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDL----K--YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHc----C--CccHHHHHHHHHHcCCCccc
Confidence 44555555555543 45666666766666 66 677777777766665 3 55666666666666 66
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
++++|+..++++++.+ ++.+++.+|.++
T Consensus 129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 6666666666666654 455666666554
No 171
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.8e-08 Score=70.17 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=73.7
Q ss_pred ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHh
Q 033440 13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l 84 (119)
.++++..++++..+.+.. +..+..+|..+...| +|++|+..|++++.+.+... +....++.++|.|+..+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ--KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 456778888888776643 688999999999999 99999999999999833211 11245888999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCH
Q 033440 85 GNYRRAFTDAEEALKLCPTNV 105 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~ 105 (119)
|++++|+..+++++ ++|++.
T Consensus 209 g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp TCHHHHHHHHHHHT-TSTTST
T ss_pred CCHHHHHHHHHHHh-CCCCCC
Confidence 99999999999999 999754
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=6.7e-09 Score=63.94 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN- 104 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~- 104 (119)
+..+..+..+|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|++++|+..+++++++.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 346788999999999999 9999999999999983221 11223589999999999999999999999999876542
Q ss_pred -----HHHHHHhhccCc
Q 033440 105 -----VKVVILCSGSHP 116 (119)
Q Consensus 105 -----~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 84 ~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 567777777653
No 173
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=7.7e-09 Score=68.54 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=68.4
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----CHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NYRRAF 91 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~~~A~ 91 (119)
+...+.++... .++.++..+|..++..+ ++++|+..|+++++. .++.+++++|.+|.. + ++++|+
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 44556665543 56788888999988877 899999999988776 467778888888877 6 788888
Q ss_pred HHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 92 TDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 92 ~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
..++++++ +.++.+++.+|.+|..
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHc
Confidence 88888854 5678888888877653
No 174
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=9.4e-09 Score=66.27 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CCC
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL---CPT 103 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l---~p~ 103 (119)
..+..+..+|..+...| ++++|+..+.+++.+.... .+..+.++.++|.++..+|++++|+..+++++.+ .++
T Consensus 24 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 67899999999999999 9999999999999953221 5677889999999999999999999999999998 443
Q ss_pred C----HHHHHHhhccCc
Q 033440 104 N----VKVVILCSGSHP 116 (119)
Q Consensus 104 ~----~~a~~~~a~~~~ 116 (119)
+ ..+++.+|.++.
T Consensus 102 ~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 102 DPLAASANAYEVATVAL 118 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 3 456777776653
No 175
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=4.7e-08 Score=69.46 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=71.1
Q ss_pred hhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-CCcchHHHHHHHHHHHHHhcC
Q 033440 14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~l~~ 86 (119)
+++.+.+.++..+. +..+.++..+|.++...| ++++|+..|.+++.+.+. .+|..+.++.++|.++..+|+
T Consensus 199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 276 (378)
T 3q15_A 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence 34555666655542 346778999999999999 999999999999993211 178889999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 033440 87 YRRAFTDAEEALKLCP 102 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p 102 (119)
+++|+..+++++++.+
T Consensus 277 ~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 277 TQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999843
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.87 E-value=2.7e-09 Score=62.85 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
+|+++.+++++|.++..+|+|++|+..++++++++|+++.+|+.+|.++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 53 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER 53 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999998753
No 177
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.85 E-value=8.7e-09 Score=72.53 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=72.1
Q ss_pred hhHHhHHHHHHhcHH------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcC
Q 033440 15 SEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~ 86 (119)
+++..++++..+.++ .+..+..+|..++..| ++++|+..+.+++.+.+.. .+....++.++|.++..+|+
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence 455556666555433 3448888999999988 9999999999999872221 11126788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440 87 YRRAFTDAEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
+++|+..+++++.+.+.. ..++..+|.++.
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999988875533 567777776653
No 178
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.85 E-value=1.7e-08 Score=57.19 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=61.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
.++++..++++...+|.++..+..+|.+++..| ++++|+..+++++.+ +|.++.++.++|.++..+|
T Consensus 25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcC
Confidence 346778888999999999999999999999999 999999999999999 9999999999999998765
No 179
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.85 E-value=5e-08 Score=71.82 Aligned_cols=79 Identities=6% Similarity=0.011 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
+|..+..+.++|..|..+| +|++|+.+|.++|++ .+..+|+-+..++|+|.+|..+|+|++|+..+++|+++
T Consensus 336 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQ--DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 6888999999999999999 999999999999976 33447888899999999999999999999999999985
Q ss_pred ---CCCCHHH
Q 033440 101 ---CPTNVKV 107 (119)
Q Consensus 101 ---~p~~~~a 107 (119)
.|+++..
T Consensus 414 ~~lG~~Hp~~ 423 (433)
T 3qww_A 414 VAHGKDHPYI 423 (433)
T ss_dssp HHTCTTCHHH
T ss_pred HHcCCCChHH
Confidence 5777654
No 180
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.85 E-value=1.1e-08 Score=69.74 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+..+..+..+|..++..| ++++|+..+++++.+.+.. .+....++.++|.++..+|++++|+..+++++.+.|..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 4556778899999999988 9999999999999873221 12233488999999999999999999999999886654
Q ss_pred ------HHHHHHhhccCc
Q 033440 105 ------VKVVILCSGSHP 116 (119)
Q Consensus 105 ------~~a~~~~a~~~~ 116 (119)
..+++.+|.++.
T Consensus 257 ~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 667777777653
No 181
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.85 E-value=1.8e-08 Score=74.70 Aligned_cols=94 Identities=17% Similarity=0.089 Sum_probs=83.0
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHH-------hChhcHH-------HHHHHHHHHHh-hccCCCcchHHHHHHHHHH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHYS-------DAIDCYTRAIN-QNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~a~~ 80 (119)
.+..+++++..+|.++..|...|..+.+ .| +++ +|+..|++++. . .|+++.++.++|..
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHHH
Confidence 4467888888999999999999999986 57 876 89999999997 8 89999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhCCCCH-HHHHHhhccC
Q 033440 81 NLLLGNYRRAFTDAEEALKLCPTNV-KVVILCSGSH 115 (119)
Q Consensus 81 ~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~a~~~ 115 (119)
+...|++++|...|+++++++|.++ .+|...+.++
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence 9999999999999999999999885 5888776543
No 182
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.81 E-value=1.5e-08 Score=69.15 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=79.3
Q ss_pred ChhhHHhHHHHHHhcHHH----HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcC
Q 033440 13 TESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~ 86 (119)
.++++..++++...+|++ +..+..+|..++..| ++++|+..+.+++.+.+. ..|..+.++..+|.++..+|+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence 346777888888888886 467888899999988 999999999999876322 134557788889999999999
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440 87 YRRAFTDAEEALKLCPTN------VKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~ 116 (119)
+++|+..+.+++++.|.. ..+++.+|.++.
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 999999999999997643 337777776654
No 183
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=2.1e-08 Score=64.63 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=77.6
Q ss_pred hhhHHhHHHHHH------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--c-chHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAA------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--S-ENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~-~~~~~~~~~a~~~~~l 84 (119)
+++...++++.. ..+..+..+..+|..+...| ++++|+..+.+++.+..... + ....++.++|.++..+
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 120 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 355666677666 56778899999999999999 99999999999998743211 2 4567899999999999
Q ss_pred cCHHHHHHHHHHHHhhCC--CC----HHHHHHhhccC
Q 033440 85 GNYRRAFTDAEEALKLCP--TN----VKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p--~~----~~a~~~~a~~~ 115 (119)
|++++|+..+++++.+.+ .+ ..++..+|.++
T Consensus 121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 999999999999997632 22 23456666655
No 184
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=3.9e-08 Score=67.78 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=68.7
Q ss_pred hhhHHhHHHHHH-------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHh
Q 033440 14 ESEKADLDAIAA-------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL 84 (119)
Q Consensus 14 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l 84 (119)
+++...++++.. ..+..+..+.++|.+++..| +|++|+..+.+++++.+.. .+..+.+++++|.++..+
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~--~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS--RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 345555666552 34567779999999999999 9999999999999983321 233478999999999999
Q ss_pred c-CHHHHHHHHHHHHhhC
Q 033440 85 G-NYRRAFTDAEEALKLC 101 (119)
Q Consensus 85 ~-~~~~A~~~~~~al~l~ 101 (119)
| .+++|+..+++++.+.
T Consensus 250 g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 250 EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 9 4799999999999863
No 185
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1.4e-07 Score=64.94 Aligned_cols=85 Identities=16% Similarity=0.001 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhCCCCH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEAL---KLCPTNV 105 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al---~l~p~~~ 105 (119)
...+...|..+...| ++++|+..|.+++...+... .....+++++|.+|..+|+|++|+..+++++ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 344567888888888 99999999999998743321 1236689999999999999999999999999 4566643
Q ss_pred ----HHHHHhhccCcC
Q 033440 106 ----KVVILCSGSHPN 117 (119)
Q Consensus 106 ----~a~~~~a~~~~~ 117 (119)
.+++++|.+|..
T Consensus 193 ~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHH
Confidence 688888887753
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.76 E-value=1.4e-07 Score=70.35 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
+|..+..+.++|..|..+| +|++|+.++.++|++ .+..+|+-...++|+|.+|..+|+|++|+..+++|+++
T Consensus 347 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQ--AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6888999999999999999 999999999999976 33447888899999999999999999999999999985
Q ss_pred ---CCCCHHHH
Q 033440 101 ---CPTNVKVV 108 (119)
Q Consensus 101 ---~p~~~~a~ 108 (119)
.|+++..-
T Consensus 425 ~~lG~~Hp~~~ 435 (490)
T 3n71_A 425 VTHGPSHPITK 435 (490)
T ss_dssp HHTCTTSHHHH
T ss_pred HHhCCCChHHH
Confidence 57776543
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=1e-08 Score=71.70 Aligned_cols=76 Identities=16% Similarity=0.008 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SE-NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
..++..+|..+...| ++++|+..|++++.- . |. .+.+.+++|.|+..+|+.++|...+++++..+|+ ..+
T Consensus 171 ~~a~~~LG~al~~LG--~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA--LFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 457788888888888 888999888888854 2 54 6678888899999999999999999999999988 777
Q ss_pred HHHhhc
Q 033440 108 VILCSG 113 (119)
Q Consensus 108 ~~~~a~ 113 (119)
+..+..
T Consensus 244 ~~aL~~ 249 (282)
T 4f3v_A 244 AAALKD 249 (282)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 766654
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.71 E-value=1.1e-07 Score=70.43 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=77.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++.++..+|.+...|..++.. .+.| ++++|...|+++++. .|.++.++...+....+.|++++|...+++++.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456778899999999999984 7777 999999999999999 999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHhh
Q 033440 100 LCPTNVKVVILCS 112 (119)
Q Consensus 100 l~p~~~~a~~~~a 112 (119)
..| ++..|+..+
T Consensus 75 ~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 75 KVL-HIDLWKCYL 86 (530)
T ss_dssp TCC-CHHHHHHHH
T ss_pred cCC-ChHHHHHHH
Confidence 999 677776655
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=3.7e-07 Score=63.80 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=77.7
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFT 92 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~ 92 (119)
++.+.++.+....|.+. ..+.+|..+++.+ +|++|+..++.++.. .+. ...+++++|.++..+|++++|+.
T Consensus 120 eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~--r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 120 DAMEALEAAPVAGSEHL-VAWMKAVVYGAAE--RWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAER 192 (282)
T ss_dssp HHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT--CHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCchH-HHHHHHHHHHHcC--CHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34444555555678888 9999999999999 999999999988776 322 24689999999999999999999
Q ss_pred HHHHHHhhC--CC-CHHHHHHhhccCc
Q 033440 93 DAEEALKLC--PT-NVKVVILCSGSHP 116 (119)
Q Consensus 93 ~~~~al~l~--p~-~~~a~~~~a~~~~ 116 (119)
.+++++... |. ...+++.+|.++.
T Consensus 193 ~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 193 RLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 999998654 66 6779999998874
No 190
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.62 E-value=3e-07 Score=67.52 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-- 100 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-- 100 (119)
+|..+..+.++|..|..+| +|++|+.++.++|++ .+..+|.-...++++|.+|..+|++++|+..+++|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLG--LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 6888999999999999999 999999999999976 34457888899999999999999999999999999885
Q ss_pred ---CCCCHHH
Q 033440 101 ---CPTNVKV 107 (119)
Q Consensus 101 ---~p~~~~a 107 (119)
.|+++..
T Consensus 403 ~~lG~~Hp~~ 412 (429)
T 3qwp_A 403 VTHGREHSLI 412 (429)
T ss_dssp HHTCTTSHHH
T ss_pred HhcCCCChHH
Confidence 5777643
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=9.6e-07 Score=54.85 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=59.6
Q ss_pred hHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCH
Q 033440 16 EKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNY 87 (119)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~ 87 (119)
++..+.++... .++.+...+|..+.. .+ |+++|+..|+++.+. .++.+.+++|.+|.. .+++
T Consensus 44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~--d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCH
Confidence 55556655443 456777778877777 56 788888888887776 466777778888877 7788
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440 88 RRAFTDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
++|+..++++.+.. ++.+.+.++
T Consensus 114 ~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 114 KQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHh
Confidence 88888888887763 466666554
No 192
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.62 E-value=5e-07 Score=55.90 Aligned_cols=80 Identities=18% Similarity=0.057 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHH---HHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSD---AIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~---A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
++....+-++.|+.+.+.. +... +|..++..+.. + | ..-..++.+|..++++|+|.+|+..++.+|+.+
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~--~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTR--YNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3455788889999998877 6665 88988888876 6 5 677899999999999999999999999999999
Q ss_pred CCCHHHHHHhh
Q 033440 102 PTNVKVVILCS 112 (119)
Q Consensus 102 p~~~~a~~~~a 112 (119)
|+|..|.-.+.
T Consensus 105 P~n~QA~~Lk~ 115 (126)
T 1nzn_A 105 PQNNQAKELER 115 (126)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99998875543
No 193
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.59 E-value=5.2e-07 Score=66.22 Aligned_cols=92 Identities=14% Similarity=-0.009 Sum_probs=67.8
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hc
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~ 85 (119)
++++..+.++... .++.++..+|..+.. .+ ++++|+..|+++++. . ++.+++++|.+|.. .+
T Consensus 348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~----~--~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK--DEQQAAIWMRKAAEQ----G--LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHhC----C--CHHHHHHHHHHHHcCCCCCC
Confidence 3445555555444 456777888888877 66 888888888888776 3 57778888888887 78
Q ss_pred CHHHHHHHHHHHHhhCC---CCHHHHHHhhccC
Q 033440 86 NYRRAFTDAEEALKLCP---TNVKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p---~~~~a~~~~a~~~ 115 (119)
++++|+..|+++++.+| +++.+++.+|.++
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 88888888888888884 3777888777765
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.58 E-value=3.5e-07 Score=56.85 Aligned_cols=90 Identities=8% Similarity=-0.092 Sum_probs=75.0
Q ss_pred hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHH
Q 033440 14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRR 89 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~ 89 (119)
++++..+.++.......+. +|..+...+ .+++|+..|+++.+. .++.+.+++|.+|.. .+++++
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~--~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCC--CHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 4566677777666543333 999998877 899999999999988 578899999999999 899999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
|+..++++.+. .++.+++.+|.+|..
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 99999999987 689999999988753
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.57 E-value=5.2e-07 Score=63.51 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=67.4
Q ss_pred hHHhHHHHHHhcHH------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhc
Q 033440 16 EKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 16 ~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~ 85 (119)
+...+.++..+.+. .+..+..+|..++..| ++++|+..+++++.+.+.. .|....++.++|.++...|
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (373)
T 1hz4_A 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence 34445555444332 2344677888888888 8888888888888773221 1445667788888888899
Q ss_pred CHHHHHHHHHHHHhhCCCC-----HHHHHHhhccC
Q 033440 86 NYRRAFTDAEEALKLCPTN-----VKVVILCSGSH 115 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~-----~~a~~~~a~~~ 115 (119)
++++|+..+++++.+.|.. ..++..+|.++
T Consensus 150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 9999999999988887642 34566666544
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.56 E-value=5.7e-07 Score=64.97 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=72.2
Q ss_pred HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
..+|.++..+..++..++..| ++++|+..+++|+.+ +| ++..+..+|.++...|++++|+..+.+|+.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~g--d~d~A~~~l~rAl~L----n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKG--KTDESYQAINTGIDL----EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 446778889999999898888 999999999999999 76 46778889999999999999999999999999988
Q ss_pred HHHHHHhhccC
Q 033440 105 VKVVILCSGSH 115 (119)
Q Consensus 105 ~~a~~~~a~~~ 115 (119)
...++....++
T Consensus 344 ~t~~~~~~l~F 354 (372)
T 3ly7_A 344 NTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHSSS
T ss_pred ChHHHHhCcee
Confidence 75555544444
No 197
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.56 E-value=3.9e-07 Score=63.88 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=75.3
Q ss_pred hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHh-----ChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHH-h
Q 033440 14 ESEKADLDAIAALKES--AAIELKEKGNEYVKK-----GKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL-L 84 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~-----g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~-l 84 (119)
+.....++++.+++|+ +..++..+|..|.+. | +.++|..+|++||++ +|+. ...++..|..+.. .
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--d~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--GMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--CHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--CHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhc
Confidence 3556678999999999 777999999999985 7 999999999999999 9975 9999999999988 5
Q ss_pred cCHHHHHHHHHHHHhhCCC
Q 033440 85 GNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~ 103 (119)
|+++++...+++++..+|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999998876
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.51 E-value=1.2e-06 Score=51.34 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH
Q 033440 11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY 74 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 74 (119)
..+++....+++++.++|+++.++..+|+.+++.| +|++|+..++++++..|. +|+...+-
T Consensus 23 ~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--~y~~Ai~~w~~~l~~~p~-~~~~~~i~ 83 (93)
T 3bee_A 23 AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--RFQEAIDTWVLLLDSNDP-NLDRVTII 83 (93)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence 44778899999999999999999999999999999 999999999999999444 44433333
No 199
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.48 E-value=4.5e-06 Score=52.58 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=76.3
Q ss_pred CCCCChhhHHhHHHHHHhc---HHHHHHHHHHHHHHHHhCh-hcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHH
Q 033440 9 SEPKTESEKADLDAIAALK---ESAAIELKEKGNEYVKKGK-KHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL 83 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~ 83 (119)
+++.+++++..++..-... .....+-++.++++.+... .+-..++.+++..+.. .| ..-..++.+|..+++
T Consensus 14 ~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~~~~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 14 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK 89 (144)
T ss_dssp GCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CCSTHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHH
Confidence 3555666776666643322 2357778889999987651 2445788899998887 66 567889999999999
Q ss_pred hcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440 84 LGNYRRAFTDAEEALKLCPTNVKVVILC 111 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~ 111 (119)
+|+|.+|...++.+|+.+|+|..+.-.+
T Consensus 90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999999999998876544
No 200
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.46 E-value=7.7e-06 Score=50.92 Aligned_cols=100 Identities=13% Similarity=-0.012 Sum_probs=76.4
Q ss_pred CCCCChhhHHhHHHHH-Hh-cH-HHHHHHHHHHHHHHHhCh-hcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHH
Q 033440 9 SEPKTESEKADLDAIA-AL-KE-SAAIELKEKGNEYVKKGK-KHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL 83 (119)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~ 83 (119)
.++.++++...++..- .. .+ -.+.+-++.++++.+... .+...+|.+++..+.. +| ..-..++.+|..+++
T Consensus 15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yk 90 (134)
T 3o48_A 15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK 90 (134)
T ss_dssp GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHH
Confidence 4455666666666542 22 22 146778888988887652 2445789999998887 77 467889999999999
Q ss_pred hcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440 84 LGNYRRAFTDAEEALKLCPTNVKVVILCS 112 (119)
Q Consensus 84 l~~~~~A~~~~~~al~l~p~~~~a~~~~a 112 (119)
+|+|.+|...++.+|+++|+|..|.-.+.
T Consensus 91 lgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 91 LGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 99999999999999999999998875543
No 201
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.45 E-value=4.9e-07 Score=66.27 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=73.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHH---HhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYV---KKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---- 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---- 85 (119)
.++++..++++. |.++.++..+|..++ ..+ ++++|+..|+++++. .++.+++++|.+|. .|
T Consensus 233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~--d~~~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG--DVEQMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSC
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCC
Confidence 345666666654 788899999999843 445 999999999999877 37888999999988 55
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 86 -NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 86 -~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
++++|+..++++. |.++.+++.+|.+|..
T Consensus 301 ~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 8999999999988 8899999999987753
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=7e-07 Score=66.67 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----C
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----C 101 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~ 101 (119)
+....+.+..+..+| +|++|+..|.+++++... .+|.-...+.++|.+|..+|+|++|+..++++|.+ .
T Consensus 309 a~~~le~a~~~~~qg--~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 309 SKDTLEKIDKARSEG--LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 444556666777878 999999999999987332 36777889999999999999999999999999986 3
Q ss_pred CCC---HHHHHHhhccCcCC
Q 033440 102 PTN---VKVVILCSGSHPNQ 118 (119)
Q Consensus 102 p~~---~~a~~~~a~~~~~~ 118 (119)
|++ ...+.++|.+|..+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~ 406 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHA 406 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHC
Confidence 555 45778888877543
No 203
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.42 E-value=3.6e-07 Score=64.36 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=73.8
Q ss_pred hhhHHhHHHHHHhcHH-----HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcC
Q 033440 14 ESEKADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~ 86 (119)
++....++++....|. ....+..+|..++..| ++++|+..+.+++.+.+.... ....++.++|.++...|+
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~ 108 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence 3455566665554332 3446888999999998 999999999999988333111 123457889999999999
Q ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHhhccCc
Q 033440 87 YRRAFTDAEEALKLC--------PTNVKVVILCSGSHP 116 (119)
Q Consensus 87 ~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~ 116 (119)
+++|+..+++++.+. |....++..+|.++.
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 999999999999875 334556777776653
No 204
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.39 E-value=3.5e-06 Score=61.78 Aligned_cols=75 Identities=11% Similarity=-0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q 033440 31 AIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 31 ~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p 102 (119)
+.++..+|..+.. .+ ++++|+..|.++++. .++.+++++|.+|.. .+++++|+..++++++.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-- 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 3444444444444 44 444444444444433 233444444444444 44444444444444332
Q ss_pred CCHHHHHHhhccC
Q 033440 103 TNVKVVILCSGSH 115 (119)
Q Consensus 103 ~~~~a~~~~a~~~ 115 (119)
+++.+++.+|.+|
T Consensus 145 ~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 145 GRDSGQQSMGDAY 157 (490)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 2344444444433
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.33 E-value=1.6e-06 Score=63.85 Aligned_cols=84 Identities=8% Similarity=-0.035 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CCC
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----CPT 103 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~ 103 (119)
...+.+......| +|++|+..|.+++++... .+|.-...+.++|.+|..+|+|++|+..++++|.+ .|+
T Consensus 300 ~~le~~~~~~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 300 NVIEEFRRAKHYK--SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHhhhcc--CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444445567 999999999999986322 36677788999999999999999999999999986 345
Q ss_pred C---HHHHHHhhccCcCC
Q 033440 104 N---VKVVILCSGSHPNQ 118 (119)
Q Consensus 104 ~---~~a~~~~a~~~~~~ 118 (119)
+ ...++++|.+|..|
T Consensus 378 Hp~~a~~l~nLa~~~~~q 395 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGL 395 (433)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 4 45788888887544
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.27 E-value=6.5e-06 Score=58.20 Aligned_cols=94 Identities=12% Similarity=-0.038 Sum_probs=70.6
Q ss_pred ChhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh
Q 033440 13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l 84 (119)
.+.+.+.++.....+| +........|++.+..|++++++|...|+++... .|+ .+..+++ |++.+
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHc
Confidence 3456666777777787 3334444456556665555899999999999888 776 4555666 89999
Q ss_pred cCHHHHHHHHHHHHhh----------CCCCHHHHHHhhc
Q 033440 85 GNYRRAFTDAEEALKL----------CPTNVKVVILCSG 113 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l----------~p~~~~a~~~~a~ 113 (119)
|+|++|...++.++++ +|+++.++.++..
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 9999999999988887 5889999977643
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.23 E-value=4.8e-06 Score=61.12 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CCC
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----CPT 103 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~ 103 (119)
........+..+| +|++|+..|++++++.. ..+|.-...+.++|.+|..+|+|++|+..+++++.+ .|+
T Consensus 289 ~ll~~ie~~~~~g--~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 289 ESLKKIEELKAHW--KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhc--cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 3444455667777 99999999999997632 236667789999999999999999999999999976 345
Q ss_pred C---HHHHHHhhccCcCC
Q 033440 104 N---VKVVILCSGSHPNQ 118 (119)
Q Consensus 104 ~---~~a~~~~a~~~~~~ 118 (119)
+ ...++++|.+|..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~ 384 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQ 384 (429)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhc
Confidence 5 45778888877543
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.22 E-value=5.3e-06 Score=60.76 Aligned_cols=93 Identities=8% Similarity=-0.022 Sum_probs=73.0
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh----ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH-H--HHhc
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKK----GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV-N--LLLG 85 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~--~~l~ 85 (119)
.++++..+.++....+..+..+..+|..+... + ++++|+..|+++. |.++.+++++|.+ + ...+
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP--DEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCC
Confidence 34566667777777777777778888888664 4 8899999998876 3677888999988 4 4678
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++++|+..++++++.+ ++.+++.+|.+|.
T Consensus 266 d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD--QPRAELLLGKLYY 294 (452)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 9999999999988654 7889999888764
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.10 E-value=1.7e-05 Score=57.29 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=71.5
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhCh-----hcHHHHHHH-HHH--HHhhccCCCcchHHHHHHHHHHHHHh
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK-----KHYSDAIDC-YTR--AINQNVLSDSENSVLYANRAHVNLLL 84 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~~~A~~~-~~~--al~~~~~~~~~~~~~~~~~a~~~~~l 84 (119)
..+++..++++.+++|+.+.++..++.+++.... +....++.. +.. ++.. +|.++.++..++..+...
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~----~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE----LNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG----GTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc----CCcCHHHHHHHHHHHHhC
Confidence 3567788999999999999999988888853220 011112221 111 2234 788999999999999989
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|++++|+..+++++.++|+ ..+|..+|.++
T Consensus 291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~ 320 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVY 320 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 9999999999999999974 67777777654
No 210
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.04 E-value=1.4e-05 Score=56.52 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
...+..+|.++...| ++++|++.+.+.|.. +| .+..++...+.+++++|+++.|...++++.+.+|+
T Consensus 100 ~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 100 PYELYLLATAQAILG--DLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred cHHHHHHHHHHHHcC--CHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 455678999999999 999999999999998 76 89999999999999999999999999999999993
No 211
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.02 E-value=6e-05 Score=48.60 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CC------------------CcchHHHHHHHHHHHHHhcCHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LS------------------DSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------------~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
...+.-.|+.+|..+ +|..|...|+++|.+.. +. .+.+..+.+..+.||.+++++.+
T Consensus 63 ~~~l~~ladalf~~~--eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 63 YQLLVYHADSLFHDK--EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 457888999999998 99999999999987622 11 12234788999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
|+.....+ -..-..++.-..+|+.|-
T Consensus 141 Ai~~Le~I-p~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 141 AIAILDGI-PSRQRTPKINMLLANLYK 166 (167)
T ss_dssp HHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred HHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence 99975543 223356788888877663
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.93 E-value=5.7e-05 Score=52.99 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHhcHHHHHHHHHHHHHHHH---h--Ch----hcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh-----cC
Q 033440 23 IAALKESAAIELKEKGNEYVK---K--GK----KHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-----GN 86 (119)
Q Consensus 23 ~~~~~~~~~~~~~~~g~~~~~---~--g~----~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-----~~ 86 (119)
+...+|++++.++=.|..... . |. +....|...++++|++ +|. +..+|..+|..|..+ |+
T Consensus 144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 445567777776655555432 1 20 2356788889999999 998 778999999999996 99
Q ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHhhccCcC
Q 033440 87 YRRAFTDAEEALKLCPTN-VKVVILCSGSHPN 117 (119)
Q Consensus 87 ~~~A~~~~~~al~l~p~~-~~a~~~~a~~~~~ 117 (119)
.++|..+++++++++|+. ...++..|..+..
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 999999999999999975 8888888876654
No 213
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.9e-05 Score=54.65 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=67.7
Q ss_pred hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440 14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~ 85 (119)
+..+..+.......+ ..+..+..+|..++..| +|.+|+..+.+++...... .+....++.+.|.++..+|
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK--QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 344444544444322 24677889999999999 9999999999998764432 4667789999999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q 033440 86 NYRRAFTDAEEALKLC 101 (119)
Q Consensus 86 ~~~~A~~~~~~al~l~ 101 (119)
+|.+|...+++++.+.
T Consensus 190 ~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAA 205 (434)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999998864
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.82 E-value=3.9e-05 Score=56.73 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------------------CCcchHHHHHHHHHHHHHhcCH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------------------SDSENSVLYANRAHVNLLLGNY 87 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~a~~~~~l~~~ 87 (119)
..|..+|.++++.| +|++|++.|.++-...++ .+|+. ...+..+|.+.|++
T Consensus 149 ~n~~~LA~~L~~Lg--~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYF 223 (449)
T ss_dssp TCHHHHHHHHHTTT--CHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhc--cHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCH
Confidence 45556666666666 667766666666322000 02333 33466789999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 88 RRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++|+..+++++.+++.+..++..+|.+|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887653
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.71 E-value=0.0002 Score=42.06 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=49.3
Q ss_pred hhHHhHHHHHHhc-------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 15 SEKADLDAIAALK-------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
.++..+..+.... +..+..+..+|.++++.| +++.|+..+++++.+ .|++..+..|++..
T Consensus 23 ~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~n~~~~ 89 (104)
T 2v5f_A 23 HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHhhHHHH
Confidence 4556666665542 346788999999999999 999999999999999 99999998888733
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.70 E-value=0.00011 Score=60.90 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
.+.+..|.++|..+...| ++++|+..|.+ .+++..|.++|.++.++|+|++|+..+..+.+.+++
T Consensus 1102 vn~p~vWsqLAKAql~~G--~~kEAIdsYiK---------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCC--CHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 456889999999999999 99999999944 478888999999999999999999999999988754
No 217
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=9.7e-05 Score=52.59 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-------------SENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..+.|..+.+.| +|++|++.|.+++...+... +....++.++|.+|...|+|++|+..+.+++.
T Consensus 6 ~~l~~a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 6 SKLEEARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456788888888 99999999999999843311 11224688999999999999999999999988
Q ss_pred hCCCCH
Q 033440 100 LCPTNV 105 (119)
Q Consensus 100 l~p~~~ 105 (119)
..+...
T Consensus 84 ~~~~~~ 89 (434)
T 4b4t_Q 84 YMMQFA 89 (434)
T ss_dssp HHHTSC
T ss_pred HHHHcc
Confidence 766543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.00075 Score=42.91 Aligned_cols=61 Identities=7% Similarity=-0.007 Sum_probs=52.4
Q ss_pred hhhHHhHHHHHHhc-H-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 14 ESEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 14 ~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
.+.+..++.+...+ | ...+.++.+|..+++.| +|++|..+++++|++ +|++..+..-+-.+
T Consensus 52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~~lL~i----eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 36778888888888 8 67999999999999999 999999999999999 99988776655444
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.62 E-value=0.00018 Score=59.78 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---------------------CcchHHHHHHHHHHHHHhcCHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---------------------DSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
+..|..+|.++.+.| ++++|++.+.+|....+|. -..++..+..++..|...|.|++
T Consensus 1221 A~ny~rLA~tLvkLg--e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred hhHHHHHHHHHHHhC--CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHH
Confidence 345556666666666 6677776666665541110 00134456677888999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 90 AFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 90 A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
|+..++.+|.++|.+...+..+|.++
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHH
Confidence 99999999999999988887777655
No 220
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00082 Score=52.64 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
....+..++..+..+| +|+-|+.+..+|+.. .|.+...|+.++.||..+|+|+.|+-.++-
T Consensus 336 ~~~LL~~Qa~FLl~K~--~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRG--DYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccC--cHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4456777888888877 999999999999999 999999999999999999999999975444
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.32 E-value=9.9e-05 Score=54.57 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
..+|...|..++..| .|++|..+|.++ ..+..+|.|+.++|+|++|+..++++ .++.+|..
T Consensus 122 ~~a~~~IGd~~~~~g--~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 122 NAHIQQVGDRCYDEK--MYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp -----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHH
Confidence 458999999999999 999999999864 24788999999999999999999999 35655554
Q ss_pred h
Q 033440 111 C 111 (119)
Q Consensus 111 ~ 111 (119)
.
T Consensus 183 v 183 (449)
T 1b89_A 183 V 183 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.28 E-value=0.0022 Score=49.72 Aligned_cols=92 Identities=4% Similarity=-0.022 Sum_probs=79.1
Q ss_pred ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC---HHH
Q 033440 13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---YRR 89 (119)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---~~~ 89 (119)
+++.+..++..+..+|.+...|........+.+ +++.+...|++++.. .|....++......-.+.++ ++.
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence 445566788888999999999999999999888 999999999999999 99999999998888888899 999
Q ss_pred HHHHHHHHHhhCC--CCHHHHHH
Q 033440 90 AFTDAEEALKLCP--TNVKVVIL 110 (119)
Q Consensus 90 A~~~~~~al~l~p--~~~~a~~~ 110 (119)
+...|++++...| .++..|..
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999884 56666643
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.08 E-value=0.0027 Score=40.86 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---------VLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...+.+....++..| .|+.|+.....++.+ ..+++ .+++..|..++..++|..|...|+++|.+
T Consensus 20 ~~~l~dqik~L~d~~--LY~sA~~La~lLlSl----~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAG--LHSNVRLLSSLLLTL----SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 456778888899988 999999999998887 33333 47888999999999999999999998775
No 224
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.96 E-value=0.0033 Score=48.73 Aligned_cols=77 Identities=13% Similarity=-0.134 Sum_probs=70.3
Q ss_pred HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHH-HHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440 18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAI-DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 96 (119)
..+++++...|..+..|...+......| +.++|. ..|.+|+.. .|.+..++...+......|++++|...+++
T Consensus 330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 330 YVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4577778889999999999999999988 888997 999999999 898999999999999999999999999999
Q ss_pred HHhh
Q 033440 97 ALKL 100 (119)
Q Consensus 97 al~l 100 (119)
++..
T Consensus 404 ~l~~ 407 (679)
T 4e6h_A 404 CIDR 407 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 225
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.016 Score=43.41 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL 110 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 110 (119)
...+..+|...--.. .+..|..+|.+|+.+ .|.+...|..+|.+....|+.-+|+-+|.+++-....++.+.-+
T Consensus 152 hr~l~~LGDL~RY~~--~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 152 QHCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred HHHHHHcccHHHHHH--HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence 346778899988877 899999999999999 99999999999999999999999999999999987778877766
Q ss_pred hhcc
Q 033440 111 CSGS 114 (119)
Q Consensus 111 ~a~~ 114 (119)
+...
T Consensus 226 L~~~ 229 (497)
T 1ya0_A 226 LQKA 229 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.035 Score=34.08 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=48.8
Q ss_pred hhHHhHHHHHHhc-H-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 15 SEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
..+..++.+...+ | ..-+.++.+|..+++.| +|+.|..+.+..|+. .|++..+..-...+
T Consensus 56 ~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg--~Y~~A~~~~~~lL~~----eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 56 KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 4566777776666 6 57788999999999999 999999999999999 99988776544443
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.28 E-value=0.068 Score=38.48 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
......+...++..+...| ++.+++..+.+++.. +|.+-.++..+-.++...|+..+|+..|++..+
T Consensus 167 ~~~~~~a~~~~~~~~l~~g--~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 167 VEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566777888889988 999999999999999 999999999999999999999999999888643
No 228
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.18 E-value=0.026 Score=39.05 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=55.7
Q ss_pred HHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 39 NEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
..+++.| +.++|+......|.. .|.++.....+...+...|+|+.|...++-+.+++|....
T Consensus 5 ~~ll~~g--~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3456777 999999999999999 9999999999999999999999999999999999998754
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.99 E-value=0.089 Score=32.58 Aligned_cols=60 Identities=20% Similarity=0.027 Sum_probs=49.6
Q ss_pred hhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
..+..++.+....| ..-+.++.+|..+++.| +|+.|..+.+..++. .|+|..+..-...+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg--dY~~Ar~y~d~lL~~----eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCCHHHHHHHHHH
Confidence 56677777777777 46788999999999999 999999999999999 99988776555444
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.55 E-value=0.21 Score=35.91 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----C--Ccc-----------hHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----S--DSE-----------NSVLYANRAHVNLLLGNYRRAFTDAE 95 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----~--~~~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~ 95 (119)
+...|......| +++.|+..+.+|+.+-.. . .++ ...+...++.++...|++.+++..+.
T Consensus 118 l~~~~~~~~~~~--~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 118 EKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555667 899999999999987321 1 011 11344556778889999999999999
Q ss_pred HHHhhCCCCHHHHHHhhccC
Q 033440 96 EALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 96 ~al~l~p~~~~a~~~~a~~~ 115 (119)
+++..+|-+..+|..+-.++
T Consensus 196 ~~~~~~P~~E~~~~~lm~al 215 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAY 215 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHH
Confidence 99999999988887765554
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.19 E-value=0.099 Score=38.75 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440 49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG 113 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~ 113 (119)
.+.....|+++|.. .|..+.++...+..+...|+.++|...+.+++.. |.+...++..+.
T Consensus 195 ~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 195 ESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp HHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence 34567789999999 8888999999999999999999999999999999 998776665443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.25 Score=38.90 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
++.-=+.-+...|+|+-|+..+++++..-|.....|+.++.+|.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi 382 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI 382 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 33333555667899999999999999999999999999999884
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.01 E-value=0.21 Score=31.30 Aligned_cols=60 Identities=20% Similarity=0.027 Sum_probs=47.7
Q ss_pred hhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440 15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV 80 (119)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~ 80 (119)
+.+..++.+....| ..-+.++.++..+++.| +|+.|.++.+..|+. .|+|..+..-...+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~----eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHT----CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHH
Confidence 45566777766666 46778999999999999 999999999999999 99888765544333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.69 E-value=0.11 Score=32.99 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
|.+.|-..|+.++.+ +..-+.++...|.--.+.|+...|...+.+++.+.|.
T Consensus 75 D~d~aR~vy~~a~~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 75 EPDDARDYFQMARAN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CGGGCHHHHHHHHHH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 444444444444444 3333444444444444555555555555555555553
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.52 E-value=0.57 Score=32.40 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=68.1
Q ss_pred CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--------------------------
Q 033440 12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-------------------------- 65 (119)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-------------------------- 65 (119)
..+..+..+...++.+|.++..-..+...++-.| +|+.|+..++....+.|.
T Consensus 12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G--~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~ 89 (273)
T 1zbp_A 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 89 (273)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456777888888899999999999999999989 999999998888887321
Q ss_pred -----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 66 -----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 66 -----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..|..+....-.+......|+.++|.....++++..|.
T Consensus 90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 12233333444455566678999999998889888764
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.42 E-value=0.11 Score=37.92 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+++..+|..+++.| |++.|++.|.++...+.. ......++...-.+++..++|..+...+.++..+
T Consensus 131 ~~~~~~la~~~~~~G--d~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIG--DKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHC--CCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346789999999999 999999999999987555 3456678888888889999999999999998654
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.08 E-value=0.84 Score=33.14 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=51.9
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
.+|..++..| +|.+|+..+.+.+..+.+.+ .....++.....+|..++++.++...+.++...
T Consensus 104 kL~~l~~~~~--~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 104 RLIALYFDTA--LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 7899999998 99999999999998755533 234466777788899999999999999988664
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.55 E-value=1.3 Score=28.20 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=36.4
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~ 85 (119)
...+.+..+..+..+.+..|...+..-.++| +...|...+.+||.+ .|..... ...|..-++.|
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg--nl~kARkILg~AiG~----~~k~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQG--NVKKSKQLLQKAVER----GAVPLEM-LEIALRNLNLQ 141 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCBCHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhcc----CCCcHHH-HHHHHHhhhcC
Confidence 3344455554555556666666666666666 777777777777776 5544433 33444444444
No 239
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=91.32 E-value=0.52 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..+|...-+.| +|++|+.+|..+|+.
T Consensus 18 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 18 MARKYAINAVKADKEG--NAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 4566777788888888 999999999999876
No 240
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.08 E-value=1.8 Score=32.15 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...|..+...+.+.| ++++|+..+.+.... ...| +...|..+-.++.+.|++++|...+++..+.
T Consensus 104 d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 104 NEATFTNGARLAVAKD--DPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567778888888888 888888888876653 1133 4455666667777888888888888887663
No 241
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.91 E-value=3.1 Score=30.72 Aligned_cols=73 Identities=8% Similarity=-0.004 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAFTDAEEALKLCPTNVKVVI 109 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~ 109 (119)
...|..-+....+.+ +.+.|...|.+| .. .+....++...|..-...+ +++.|...++++++.-|+.+..+.
T Consensus 286 ~~lw~~y~~~~~r~~--~~~~AR~i~~~A-~~----~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 286 DLLRINHLNYVLKKR--GLELFRKLFIEL-GN----EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHHHHH-TT----SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHh-hC----CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 455666676666766 899999999999 43 2334566666676666666 599999999999998888876554
Q ss_pred H
Q 033440 110 L 110 (119)
Q Consensus 110 ~ 110 (119)
.
T Consensus 359 ~ 359 (493)
T 2uy1_A 359 E 359 (493)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=90.75 E-value=0.63 Score=26.16 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..+|...=+.| +|++|+.+|..+|+.
T Consensus 10 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEG--KVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 4666777888888888 999999999999876
No 243
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.69 E-value=2.1 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+...|..+-..+.+.| ++++|.+.+.+..+. ...| +...|..+-.++.+.|++++|...+++.-+.
T Consensus 139 d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~--G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 139 RLRSYGPALFGFCRKG--DADKAYEVDAHMVES--EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHCC--CHHHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 4667888888999988 999999999998764 2245 4456777888999999999999999998663
No 244
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=90.61 E-value=1.5 Score=25.23 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH-HHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLL 83 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~ 83 (119)
...++.+...|..+++.+ +|.+|+..++++..... +|+...++ +.++.|--+
T Consensus 50 e~~~r~~i~eak~~y~~~--ny~ea~~l~~k~~n~te--n~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETA--NYGEALVFFEKALNLSD--NEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc--chhHHHHHHHHHHcccc--CHHHHHHHHHHHHHHHHH
Confidence 467889999999999999 99999999999986610 23434444 666777544
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.91 E-value=2.9 Score=27.43 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccC---------CCcchHHHHH-HHHHHHHHhcCHHHHHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVL---------SDSENSVLYA-NRAHVNLLLGNYRRAFTDAEE 96 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~---------~~~~~~~~~~-~~a~~~~~l~~~~~A~~~~~~ 96 (119)
+.+.+-...++.+.. ||..|+...+..|+- .|+ ++|.+...++ -.|..+...|+-+|||.++..
T Consensus 62 ~Ts~YYk~LCy~klK--dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 62 CTSKYYESLCYKKKK--DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 455566777888866 999999999999842 121 3555665554 468888899999999999999
Q ss_pred HHhhCCCCHH
Q 033440 97 ALKLCPTNVK 106 (119)
Q Consensus 97 al~l~p~~~~ 106 (119)
.....|-.+.
T Consensus 140 Sf~~~~lf~~ 149 (242)
T 3kae_A 140 SFGKSFLFSP 149 (242)
T ss_dssp HHHHCCCHHH
T ss_pred hcCCccccch
Confidence 9999886543
No 246
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=89.70 E-value=0.83 Score=26.38 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.+..+-.++..+.+.|+|++||+..+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34556667777888888888877666654
No 247
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=89.65 E-value=0.96 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...-..| +|++|+.+|..+|+.
T Consensus 15 ~A~~lv~~Ave~D~~g--~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSES--RYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 3455666677777777 999999999999976
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.33 E-value=3.7 Score=26.91 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
+--.-.+..++-.| .|..++-.+ .. -+..+..+..+.||.++++|..|+......+
T Consensus 34 eY~lL~~I~Lyyng--EY~R~Lf~L---~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 34 EYRMLMSIVLYLNG--EYTRALFHL---HK------LNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp CTHHHHHHHHHHTT--CHHHHHHHH---HT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcc--hHhHHHHHH---Hh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677788888 888777654 22 3556666778999999999999999999999
No 249
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=88.10 E-value=1.2 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|...-..| +|++|+.+|..+++.
T Consensus 14 ~Ai~lv~~Ave~D~~g--~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAES--RYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3455666777777777 999999999988876
No 250
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=87.99 E-value=1.3 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+...|...-..| +|++|+.+|..+++.
T Consensus 13 A~~l~~~Av~~D~~g--~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTAT--QYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 445555666666767 999999999998875
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.48 E-value=3 Score=26.86 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--------hHHH-------------HHHHHHHHHHhcCHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--------NSVL-------------YANRAHVNLLLGNYR 88 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--------~~~~-------------~~~~a~~~~~l~~~~ 88 (119)
+...|..+|......| +++-|.++|.++=.. +.- +..- +.-...+++.+|+++
T Consensus 33 ~~~~Wk~Lg~~AL~~g--n~~lAe~cy~~~~D~----~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~ 106 (177)
T 3mkq_B 33 DSITWERLIQEALAQG--NASLAEMIYQTQHSF----DKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK 106 (177)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHTTCH----HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHcC--ChHHHHHHHHHhCCH----HHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHH
Confidence 4668999999999999 999999999875433 110 1111 122245677788888
Q ss_pred HHHHHHHHH
Q 033440 89 RAFTDAEEA 97 (119)
Q Consensus 89 ~A~~~~~~a 97 (119)
+++..+.+.
T Consensus 107 ~~i~lL~~~ 115 (177)
T 3mkq_B 107 ERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 888877553
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.22 E-value=2 Score=32.14 Aligned_cols=62 Identities=16% Similarity=0.023 Sum_probs=47.9
Q ss_pred hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440 15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~ 82 (119)
.+...+.++..++|+....+.++|..+...| +.-.|+-+|.+++.. ....+.+..|+...+-
T Consensus 170 ~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~--~~l~a~y~y~rsl~~----~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKG--DHLTTIFYYCRSIAV----KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT--CHHHHHHHHHHHHSS----SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhccc--ccHHHHHHHHHHHhc----CCCChhHHHHHHHHHH
Confidence 4455678888999999999999999999988 999999999999975 3334444455444443
No 253
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=86.98 E-value=1.5 Score=26.36 Aligned_cols=30 Identities=33% Similarity=0.570 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+..+|...-..| +|++|+.+|..++++
T Consensus 18 Ai~lv~~Ave~D~ag--~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 18 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 445566666666767 999999999998875
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.84 E-value=1.9 Score=32.49 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 104 (119)
.+.+..+.-+-..|...+ .|++|.....++. .|.. ++.....++..|.++...++|.+|..++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~--~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNG--EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSS--CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccC--cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 456777777788888887 9999999998874 2211 22335678889999999999999999999999988754
No 255
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=86.63 E-value=2.1 Score=33.06 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
+......|..++..| +|.-|.+..+.++.. +|++..+..-++.+|..+|.
T Consensus 449 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~~----~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHH
Confidence 455677889999988 999999999999999 99999999999999988873
No 256
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=85.64 E-value=2.2 Score=23.43 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~ 72 (119)
..+|-.+...| ++++|+..+..||.. +|....
T Consensus 21 V~~GE~L~~~g--~~~~~~~hf~nAl~V----c~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQG--DYEKGVDHLTNAIAV----CGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHH----cCCHHH
Confidence 46788899988 999999999999998 655443
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.01 E-value=6.2 Score=32.56 Aligned_cols=70 Identities=7% Similarity=-0.169 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..-..+..+-+.+++.| +.++|...+....+.......-+...|..+-..|.+.|++++|+..+++..+.
T Consensus 125 ~~~~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34445888888999988 99999999866433200001235667788888888999999999999998763
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=84.77 E-value=6.3 Score=29.99 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
...|..+|..+.+.+ +++.|..+|.++
T Consensus 681 ~~~W~~la~~al~~~--~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRF--NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcC--CHHHHHHHHHHc
Confidence 567899999999998 999999999885
No 259
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=82.75 E-value=6.3 Score=25.70 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV 64 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~ 64 (119)
..++-.+-+|..++.++ +|.+|.+.+.+|+..+|
T Consensus 12 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~~~ 45 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDS--DFKQAEEYLSFAFEHCH 45 (203)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHCC
Confidence 35667888999999988 99999999999999943
No 260
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=82.57 E-value=6.6 Score=28.66 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
|+..+..++.|+...|.. .++...++.-+|.+|+-+|+|++|+..+++++..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 455566677777765532 2345567888899999999999999999999864
No 261
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.66 E-value=2.6 Score=27.58 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440 69 ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 107 (119)
.-....+.+|..++..++|.+|..++..|++..|.....
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence 456788899999999999999999999999998866443
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.65 E-value=7.7 Score=24.46 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
.-++--+.+...+.- .+-++..+..+|.+|-++|+-.+|-+...+|.+-.
T Consensus 106 KkDqLdki~~~~l~n----~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 106 KRDKLEEIGREILKN----NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHhcc----CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444444444443333 56679999999999999999999999999988753
No 263
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=81.65 E-value=7.1 Score=28.88 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhccCC-------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 49 YSDAIDCYTRAINQNVLS-------DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
|+..+..++.|+...|.. .++...++.-+|.+|+-+++|++|+..+++++...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344455566666655431 13455678888999999999999999999999753
No 264
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=81.04 E-value=8.3 Score=24.43 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchH--HHH-HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENS--VLY-ANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~--~~~-~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
-...|..+|+.| +|=+|=+.++.+....+.. ...-. .+. ...|..+...||+.-|...+.+++.
T Consensus 35 ~~~~~i~lFn~g--~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSG--EFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466788899988 9999999998888762221 00112 233 4455566778999999999999987
No 265
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=80.95 E-value=4.5 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+..++..+.+.| .|++||++..++...
T Consensus 14 ~AH~~~RrAe~ll~~g--kydeAIech~kAa~y 44 (97)
T 2crb_A 14 LAHQQSRRADRLLAAG--KYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 3666777888899988 999999887777744
No 266
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=80.86 E-value=8.1 Score=28.24 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
|+..+..++.|+...|.. -++...++.-+|.+|+-+|+|++|+..+++++..
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345556677777665532 2455667888899999999999999999999863
No 267
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=80.82 E-value=7.5 Score=26.61 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++. |..+|-...+..|.+..|+. ++++++|+..++++++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777888888652 22355555666777776665 7999999998888775
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=80.59 E-value=4.2 Score=22.73 Aligned_cols=14 Identities=14% Similarity=-0.043 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
.+.|+....+|++.
T Consensus 16 ~~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 16 EEMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 269
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=80.58 E-value=8.6 Score=28.17 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
|+..+..++.|+...|.. -+....++.-+|.+|+-+|+|++|+..+++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 455566677777765532 23455678888999999999999999999999753
No 270
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=79.85 E-value=7.2 Score=26.16 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~l 100 (119)
+-+.|...|..|.++. |..+|-...+..|.+..|+ -++++++|....+++++.
T Consensus 140 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 140 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678889999998752 2235666677777777766 578999999999999764
No 271
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=79.21 E-value=3.6 Score=23.77 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=23.6
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+|-.+...| +++.|+..+..||..
T Consensus 24 V~lGE~L~~~g--~~e~av~Hf~nAl~V 49 (95)
T 1om2_A 24 IQLGEELLAQG--DYEKGVDHLTNAIAV 49 (95)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 56888999988 999999999999998
No 272
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=78.05 E-value=5.6 Score=22.13 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhh
Q 033440 50 SDAIDCYTRAINQ 62 (119)
Q Consensus 50 ~~A~~~~~~al~~ 62 (119)
+.|+....+|++.
T Consensus 9 ~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 9 DMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 273
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=76.38 E-value=15 Score=24.71 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|+++. |..+|-...+..|.+..|+. ++++++|...++++++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777888888652 22355555666677776665 8999999999988876
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.38 E-value=8 Score=21.15 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
..+|..+...|++++|+.++-+|+.+.|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45677888889999999999999999876444
No 275
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=75.29 E-value=14 Score=27.42 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhccCC-------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQNVLS-------DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
|+..+..++.|+...|.. -.....++.-+|.+++..++|++|+..+++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666665531 2344567888899999999999999999999964
No 276
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=75.19 E-value=11 Score=27.55 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
++...++.-+|.+|+-+++|++|+..+++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445678888899999999999999999999874
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.06 E-value=7.9 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHhh
Q 033440 48 HYSDAIDCYTRAINQ 62 (119)
Q Consensus 48 ~~~~A~~~~~~al~~ 62 (119)
..+.|+....+|++.
T Consensus 11 ~l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 11 DSTAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666666554
No 278
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=74.06 E-value=13 Score=25.13 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++. |..+|-...+..|-+..|+ -++++++|...++++++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677788887642 2225555566666666666 47999999998888765
No 279
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=73.86 E-value=8.3 Score=21.35 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=11.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Q 033440 77 RAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|.-.-..|+|++|+..|..+++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344666666665555544
No 280
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=73.76 E-value=38 Score=28.15 Aligned_cols=67 Identities=6% Similarity=-0.084 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFTDAEEALKLC 101 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~ 101 (119)
+...|..+-+.+.+.| ++++|++.|.+-.+. +..| |...|..+-.|+.+.|+ .++|...+++..+-.
T Consensus 164 dvvTYNtLI~Glck~G--~~~eA~~Lf~eM~~~--G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQG--AFKELVYVLFMVKDA--GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CHhHHHHHHHHHHhCC--CHHHHHHHHHHHHHc--CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 5778899999999999 999999999998764 1145 55557777778999998 578889999887643
No 281
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=73.58 E-value=8.8 Score=21.51 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=12.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Q 033440 77 RAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 77 ~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.|.-.-..|+|++|+..|..+++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333445666666665555554
No 282
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.27 E-value=15 Score=26.91 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
...++.-+|.+|+-.|+|++|+..+++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 4467777889999999999999999999965
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.66 E-value=4.4 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
...+|..+-..| +|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~G--nYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLG--NYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHT--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--ChHHHHHHHHHHHHH
Confidence 345677788888 999999999999976
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.52 E-value=12 Score=30.15 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=38.5
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.....+...| .++-+. ..+.. .|.++..-|-+|.+++.+|++++|...+.+|-
T Consensus 815 ~l~~~L~~~~--~~~~a~----eL~~~----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFK--QYNACM----QLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTT--CHHHHH----HHGGG----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhc--HHHHHH----HHHhh----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3555666666 655332 23444 66777777889999999999999999999863
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.17 E-value=21 Score=28.73 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-------------------CCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-------------------SDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.-+-+|.++...| ++++|..+|.+|-.-+.. .......+|..+...+...+-++-+++.
T Consensus 842 ~~yv~gr~~L~~g--e~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 842 AVYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3478999999999 999999999876532110 0112335788888899999999999999
Q ss_pred HHHHHh-hCCCCHH
Q 033440 94 AEEALK-LCPTNVK 106 (119)
Q Consensus 94 ~~~al~-l~p~~~~ 106 (119)
++.|+. +++++..
T Consensus 920 A~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 920 SLLADASKETDDED 933 (950)
T ss_dssp HHHHHHTCCSCCHH
T ss_pred HHHHHhhcccCCcc
Confidence 999997 4455554
No 286
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.55 E-value=8.8 Score=22.86 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
.+.|+.+..+|++.
T Consensus 15 l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 15 LQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 287
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=71.10 E-value=14 Score=25.43 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhc------cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Q 033440 50 SDAIDCYTRAINQN------VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~------~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~l 100 (119)
+.|...|+.|.++. |..+|-...+..|-+..|+ -++++++|...++++++-
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677788887652 2225555566667777666 589999999999999875
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.06 E-value=6.2 Score=22.76 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..+|..+...|+++.|+.++-+|+.+.|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34677777888888888888888888764
No 289
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=70.74 E-value=20 Score=27.19 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 68 SENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
.++...+.++|....+.++++.|+..|.++
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 356778899999999999999999999885
No 290
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=70.14 E-value=13 Score=21.21 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=41.8
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
...|..+|+.| +|=+|=+.++..-.. .|.. ..+....|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g--~~~eaHEvlE~~W~~----~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAG--RYYEVHEVLEPYWLK----ATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCC--ChHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 35678899988 999999999888877 4332 23344445556677888 9999999877
No 291
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=72.65 E-value=0.94 Score=35.13 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A 90 (119)
+......+..++..| +|.-|..+.+.++.. +|++..+..-++.+|..+|.-.+.
T Consensus 461 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~a----~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKG--DYRWAVQLGNHLVFA----DPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 556677888889988 999999999999999 999999988899998888754443
No 292
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.91 E-value=21 Score=29.23 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-------------------CCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-------------------SDSENSVLYANRAHVNLLLGNYRRAFTD 93 (119)
Q Consensus 33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~ 93 (119)
.-+-+|.+++..| ++++|..+|.++-.-... .....+.+|..+...+.+.+.++.+++.
T Consensus 844 ~~yl~g~~~L~~g--e~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 844 AVYLKALIYLKSK--EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4478999999999 999999999887432110 0122345677777888889999999999
Q ss_pred HHHHHhhCC
Q 033440 94 AEEALKLCP 102 (119)
Q Consensus 94 ~~~al~l~p 102 (119)
.+.|++..+
T Consensus 922 a~lAi~~~~ 930 (1139)
T 4fhn_B 922 SLLADASKE 930 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcc
Confidence 999998654
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=68.89 E-value=12 Score=27.73 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHhhccC-----CC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CCCC
Q 033440 36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----SD--SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-CPTN 104 (119)
Q Consensus 36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~ 104 (119)
.+-..||+.+ +...+-..+. +++.... .. ......+|.+|..++..++|.+|.+++..|++. .|..
T Consensus 181 ~L~kiYFkl~--~~~lckni~k-~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIE--SPQLCSNIFK-NFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSS--CCTTHHHHHH-THHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcC--CHHHHHHHHH-HhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4557788888 7777666553 3332100 01 245578899999999999999999999999998 7755
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.78 E-value=28 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=22.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440 80 VNLLLGNYRRAFTDAEEALKLCPTNVK 106 (119)
Q Consensus 80 ~~~~l~~~~~A~~~~~~al~l~p~~~~ 106 (119)
..++.++|..|...+++.|++.|.-..
T Consensus 216 ~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 356889999999999999999986543
No 295
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=67.49 E-value=26 Score=23.77 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|..|.++. |..+|-...+..|.+..|+. ++++++|...++++++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777788887642 22255555666667666665 7999999998888865
No 296
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=66.88 E-value=28 Score=23.84 Aligned_cols=50 Identities=18% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++ .|..+|-...+..|.+..|+. ++++++|...++++++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788888764 222255555666677766665 7999999998888865
No 297
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=66.51 E-value=29 Score=25.88 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhccC---------CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 50 SDAIDCYTRAINQNVL---------SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
+..+..++.|+...|. .-+....++.-+|.+++-.++|++|...+++++..
T Consensus 168 ~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 168 KWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555666665441 01334467788889999999999999999999874
No 298
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.45 E-value=30 Score=23.66 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440 50 SDAIDCYTRAINQN---VLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK 99 (119)
Q Consensus 50 ~~A~~~~~~al~~~---~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~ 99 (119)
+.|...|+.|.++. |..+|-...+..|.+..|+. ++++++|...++++++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778899888764 11244444566666666665 8999999999998876
No 299
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=64.70 E-value=15 Score=26.98 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
|+..+..++.|+...|.. .+....++.-+|.+|+..++|++|+..+++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 445556666666665531 234556778889999999999999999999875
No 300
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=62.27 E-value=20 Score=26.12 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 52 AIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 52 A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++.+|.+||....+. .....--|..+|-++++.+++.+|+.....+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 677788887652221 123344566778899999999999998887654
No 301
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=61.86 E-value=18 Score=27.86 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP 116 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~ 116 (119)
....+|...+..|+|.-|.+.++.++..+|+|..+...++.+|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~ 494 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALE 494 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 45556777788999999999999999999999999988887763
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.58 E-value=52 Score=25.21 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=43.2
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+..+. ..+.| |++.|...+.+.-.. ....+...+=+|.++..+|+.++|...+.++..
T Consensus 290 ~~~r~-Alr~~--d~~~a~~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRM-ALGTG--DRRGLNTWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHH-HHHHT--CHHHHHHHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHH-HHHCC--CHHHHHHHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33444 45667 999999988764333 344566666678888999999999999999976
No 303
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=61.28 E-value=21 Score=20.90 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=29.1
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..++++....+....+.| +|++|.....++=+.
T Consensus 15 ~~aG~ArS~~~eAl~~Ak~g--~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 15 AYAGDARSKLLEALKAAENG--DFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35678999999999999988 999999988776543
No 304
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.88 E-value=45 Score=24.22 Aligned_cols=67 Identities=19% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
.++.-..++..++..| ++.+|...+.....-..... ..-..++..-...++..++|.+|...++++.
T Consensus 136 rarl~~~La~i~e~~g--~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEG--KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555678899999999 99999999888664321112 2334566667778889999999999999874
No 305
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=60.44 E-value=22 Score=20.70 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..++++....+....+.| +|++|.....++=+.
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g--~fe~A~~~l~eA~~~ 47 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQG--DFAAAKAMMDQSRMA 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 5678889999999999988 999999888776543
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=59.48 E-value=23 Score=26.20 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 52 AIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 52 A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++.+|.+||....+. .....-.|..+|-++.+.++|.+|+..+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 567777777653222 123345566678899999999999999888754
No 307
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.01 E-value=18 Score=29.69 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=36.3
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
+...+...+ .++-+.+ .+.. .|.++..-+-+|.+++..|++++|...+.++
T Consensus 818 l~~~l~~~~--~~~~~~~----l~~~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFK--QYNACMQ----LIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHS--CTTHHHH----HHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhh--hHHHHHH----Hhhh----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455555 5544433 2334 5666667788999999999999999999886
No 308
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=57.39 E-value=11 Score=27.69 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440 32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86 (119)
Q Consensus 32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~ 86 (119)
+.+...+..+|..|+ .|+.|+..|...+.. .....-=|..++.++..+.+
T Consensus 92 e~L~~~~i~~f~kg~-~~E~ai~l~k~L~~~----yE~~~~Dy~~Ls~~~~~~a~ 141 (436)
T 2yin_A 92 ETLYETIIGYFDKGK-MWEEAISLCKELAEQ----YEMEIFDYELLSQNLIQQAK 141 (436)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH----HHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 456777888888875 999999999999876 43332224556666655543
No 309
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=56.98 E-value=27 Score=20.56 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
+..++++....+....+.| +|++|...+.++=+
T Consensus 18 ~aG~Ars~~~eAl~~Ak~g--dfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQG--KMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 5667888888999999988 99999988877754
No 310
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=54.45 E-value=54 Score=23.12 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQN 63 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~ 63 (119)
-.+.|-.++..| +|++|+..|+..|-.+
T Consensus 105 ~Lk~gyk~~t~g--Kf~eAl~~Fr~iL~~i 132 (320)
T 3mkr_B 105 RLQLCYQLTTVG--KFEEAVEKFRSILLSV 132 (320)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHh
Confidence 457789999988 9999999998888553
No 311
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=54.13 E-value=40 Score=21.55 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440 38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97 (119)
Q Consensus 38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 97 (119)
-....+.| +++.|.+.... + ++...|..+|..-+..|+++-|..+|.++
T Consensus 12 F~LAL~lg--~l~~A~e~a~~---l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 12 FDLALEYG--NLDAALDEAKK---L------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHTT--CHHHHHHHHHH---H------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcC--CHHHHHHHHHH---h------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34456667 88888887533 2 45667888899888999999999888775
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.06 E-value=71 Score=24.12 Aligned_cols=36 Identities=17% Similarity=-0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL 65 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~ 65 (119)
...++-++-.|.++.-++ +|.+|.+++..|+..+|.
T Consensus 267 ~q~~rY~YY~GRI~a~q~--~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 267 SLEARYFFYLSKINAIQL--DYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCc
Confidence 345677888999999988 999999999999998543
No 313
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.56 E-value=64 Score=23.41 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh-ccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ-NVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 100 (119)
..+.+......+...+ ||..|...++++... .....+ ....++...|..+..-++|.+|-.+|.+++..
T Consensus 176 kve~~l~q~rl~l~~~--d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 176 KIQFILEQMELSILKG--DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566777788888888 999999998887431 111112 23345666677888889999999999999764
No 314
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=51.11 E-value=21 Score=20.25 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQ 62 (119)
Q Consensus 49 ~~~A~~~~~~al~~ 62 (119)
|+.|..+.+++|..
T Consensus 13 h~~AF~~Is~aL~~ 26 (89)
T 3eab_A 13 HKQAFEYISIALRI 26 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444444
No 315
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=50.65 E-value=60 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhccCC-----CcchHHHHHHHHHHHH------HhcCHHHHHHHHHHHHh
Q 033440 49 YSDAIDCYTRAINQNVLS-----DSENSVLYANRAHVNL------LLGNYRRAFTDAEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~a~~~~------~l~~~~~A~~~~~~al~ 99 (119)
|+..+..++.|+...|.. -+....++.-+|.+|+ ..++|++|+..+++++.
T Consensus 161 y~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 161 FNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 445556666676665432 2334456666677666 46899999999999985
No 316
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=50.40 E-value=62 Score=23.66 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhccCC------CcchHHHHHHHHHHHHHh------cCHHHHHHHHHHHHh
Q 033440 49 YSDAIDCYTRAINQNVLS------DSENSVLYANRAHVNLLL------GNYRRAFTDAEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~------~~~~~~~~~~~a~~~~~l------~~~~~A~~~~~~al~ 99 (119)
|+..+..++.|+...|.. -+....++.-+|.+++-. ++|++|+..+++++.
T Consensus 169 y~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 169 YTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 345556677777665531 123455667777777754 899999999999996
No 317
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=49.73 E-value=61 Score=23.98 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhccCC-----------CcchHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhh
Q 033440 49 YSDAIDCYTRAINQNVLS-----------DSENSVLYANRAHVNLLL--------GNYRRAFTDAEEALKL 100 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~a~~~~~l--------~~~~~A~~~~~~al~l 100 (119)
|+..+..++.|+...|.. -.....++.-+|.+|+-. ++|++|+..+++++..
T Consensus 163 ~~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~ 233 (535)
T 3ihv_A 163 YEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVES 233 (535)
T ss_dssp HHHHHHHHHHHHHHCCCTTTCCSSSCCTTSCCHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccCccHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhc
Confidence 344445566666655532 123345666777788776 5799999999999864
No 318
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=49.02 E-value=27 Score=25.96 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 51 DAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 51 ~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.++.+|.++|....+. .....--|..+|-++++.+++.+|+.....+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 3567777777652221 123344566778899999999999998887654
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.04 E-value=47 Score=20.69 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
....+..|..-|..+...|++.+|...++.+++-+.
T Consensus 97 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 456778888889999999999999999999998653
No 320
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=47.56 E-value=27 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+..+...|..|...| |.+.|.-.|.+.+.+
T Consensus 38 rta~~llr~A~~y~~eg--d~e~AYily~R~~~L 69 (146)
T 2xze_A 38 RSGVEIIRMASIYSEEG--NIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence 35677888899999999 999999999887655
No 321
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=47.03 E-value=49 Score=24.22 Aligned_cols=50 Identities=20% Similarity=0.064 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhh-ccCC----CcchHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhh
Q 033440 51 DAIDCYTRAINQ-NVLS----DSENSVLYANRAHVNLLLG---------NYRRAFTDAEEALKL 100 (119)
Q Consensus 51 ~A~~~~~~al~~-~~~~----~~~~~~~~~~~a~~~~~l~---------~~~~A~~~~~~al~l 100 (119)
..+..++.|+.. .|.. -.+...++.-+|.+|+-.+ +|++|+..+++++..
T Consensus 163 ~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 163 IIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp THHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 455566777765 5521 2345567788888998888 899999999999874
No 322
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=44.29 E-value=4.7 Score=27.57 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+..+|..+-+.| +|++|+.+|..+|+.
T Consensus 23 Ai~lv~~AVe~D~~g--~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 23 AATVLKRAVELDSES--RYPQALVCYQEGIDL 52 (257)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 444556666666767 999999999999976
No 323
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.84 E-value=66 Score=21.06 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
||.....|...+..+.. + +...+...|.-....-. ....+..|..-|..+...|++.+|...|+.+++-+
T Consensus 76 D~RYLklWl~Ya~~~~~-~--~~~~p~~if~~L~~~~I--G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 76 DPRFLKIWIWYINLFLS-N--NFHESENTFKYMFNKGI--GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHHST-T--CHHHHHHHHHHHHHHTS--STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhcc-c--ccCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56666666666655421 1 35566666665554310 45778888899999999999999999999999865
No 324
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.87 E-value=46 Score=19.03 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
.+.....-|.-+++.++|.+|...++++..+..
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 444556677789999999999999999987654
No 325
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=42.34 E-value=54 Score=19.62 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=28.8
Q ss_pred hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440 26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61 (119)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~ 61 (119)
.+..++++....+....+.| +|++|...+.++=+
T Consensus 32 ~~aG~ARS~~~eAl~~Ak~g--dfe~A~~~l~eA~e 65 (120)
T 3l8r_A 32 LNSGNARSIVHEAFDAMREK--NYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 46778999999999999988 99999998877754
No 326
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.25 E-value=93 Score=22.33 Aligned_cols=70 Identities=6% Similarity=-0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS--VLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
..+.+......++..+ ||..+...+.++-.+.....++.. .+....|..+...++|.+|...|-.++..-
T Consensus 167 kid~~l~~irl~l~~~--d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 167 KIDVMLTIARLGFFYN--DQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4555666677777777 999999999998766332221121 334445666777899999999999887653
No 327
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.35 E-value=90 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh-ccC
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ-NVL 65 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~ 65 (119)
..+.-.+-.|..++-++ +|.+|-+.+..|+.. +|.
T Consensus 218 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNS--QVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHC
T ss_pred ceEeeeHHHHHHHHHHc--cHHHHHHHHHHHHHhcCCc
Confidence 45677889999999988 999999999999998 775
No 328
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=38.74 E-value=1.1e+02 Score=22.07 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCc-chHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDS-ENSVLYANRAHVNL-LLGNYRRAFTDAEEALK 99 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~-~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~ 99 (119)
.-..+.+......+...+ ++..+-..|+++...... .+| -.+.+...-|..++ ..++|.+|..++-++++
T Consensus 136 ~~llev~lle~~~~~~~~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALS--NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 345566777788888988 999999999999865211 122 23456666788888 89999999999999875
No 329
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=38.70 E-value=28 Score=16.15 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.8
Q ss_pred cCHHHHHHHHHHHHhhC
Q 033440 85 GNYRRAFTDAEEALKLC 101 (119)
Q Consensus 85 ~~~~~A~~~~~~al~l~ 101 (119)
+-|++|+..++.+++.+
T Consensus 16 KayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 16 KAYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44677888777777654
No 330
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=37.58 E-value=55 Score=18.37 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
+.+..+.+-|..++..| |+..|+.++.-+
T Consensus 37 ~mA~~Y~~Da~~fl~kG--D~v~Ala~isYa 65 (87)
T 2pmr_A 37 ERALNYRDDSVYYLEKG--DHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 35666777777777766 777777765433
No 331
>3jq0_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Probab=37.20 E-value=70 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHh
Q 033440 69 ENSVLYANRAHVNLLLG--------NYRRAFTDAEEALK 99 (119)
Q Consensus 69 ~~~~~~~~~a~~~~~l~--------~~~~A~~~~~~al~ 99 (119)
....++.-+|.+|+-.+ +|.+|+..+++++.
T Consensus 181 tk~aA~allArvyL~~~~~~~~~~~~~~~A~~~a~~vi~ 219 (493)
T 3jq0_A 181 SAAATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVKK 219 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHh
Confidence 34456666777887665 78999999999985
No 332
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=36.58 E-value=57 Score=18.28 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440 28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRA 59 (119)
Q Consensus 28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~a 59 (119)
-+.+..+.+-|..++..| |+..|+.++.-+
T Consensus 32 l~mA~~Y~~Da~~fl~kG--D~v~Ala~isYa 61 (86)
T 2oo2_A 32 MRNIEAYISDSRYFLEKG--DLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 346777777788888877 888888775443
No 333
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=34.03 E-value=68 Score=19.41 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.++.+...|..+...| |+-+|-+.|=+|++.
T Consensus 6 lAe~yL~EA~ell~kG--D~vQAsEK~ykAaee 36 (129)
T 2jpu_A 6 SAEVYYEEAEEFLSKG--DLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 4667778888888877 888887776666654
No 334
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=33.81 E-value=65 Score=23.38 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++++..+|.|+.++|+..+|+.+++++.+
T Consensus 338 aEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 366 (461)
T 3kez_A 338 SEAYLNAAEAAVQTGDNAKAVKYLNSIVQ 366 (461)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 46888899999999999899888887654
No 335
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.63 E-value=77 Score=18.86 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+-.+...|...-..| +-+.|+.+|.+.|..
T Consensus 21 ~AF~~Is~AL~~DE~g--~k~~Al~lYk~GI~e 51 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELG--QKEEAKNYYKQGIGH 51 (116)
T ss_dssp HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcC--CHHHHHHHHHHHHHH
Confidence 4555556666666666 777777777777754
No 336
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.31 E-value=9.1 Score=29.69 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440 73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117 (119)
Q Consensus 73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~ 117 (119)
....+|...+..|+|.-|.+.++.++..+|+|..+...++.+|.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~ 507 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQ 507 (668)
Confidence 344566667788999999999999999999999999888888754
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.94 E-value=1.1e+02 Score=20.27 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
....+..|..-|..+...|+|.+|...|+.++.-+
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45567788888999999999999999999999865
No 338
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=30.93 E-value=95 Score=19.08 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
.+..+...|..+...| |.+.|--.|.+.+.+
T Consensus 41 sa~~L~r~A~~y~~EG--d~E~AYilymRy~~L 71 (144)
T 2a9u_A 41 SALKIFKTAEECRLDR--DEERAYVLYMKYVTV 71 (144)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4667788899999999 999999998887655
No 339
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=30.78 E-value=10 Score=27.52 Aligned_cols=30 Identities=33% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+..+..+|..+-+.| +|++|+.+|..+++.
T Consensus 11 A~~~~~~Av~~D~~g--~~~eA~~~Y~~a~~~ 40 (444)
T 2zan_A 11 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY 40 (444)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 344455555566666 899999999998876
No 340
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=30.73 E-value=1.1e+02 Score=19.59 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=8.4
Q ss_pred HHHhChhcHHHHHHHHHHHH
Q 033440 41 YVKKGKKHYSDAIDCYTRAI 60 (119)
Q Consensus 41 ~~~~g~~~~~~A~~~~~~al 60 (119)
+.+.| .|++|..+..+..
T Consensus 42 Llql~--~ydea~~yI~~~~ 59 (192)
T 1ixm_A 42 NLSLQ--KYDRVFEMIEEMV 59 (192)
T ss_dssp HHHTT--CHHHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHH
Confidence 34444 4555555444433
No 341
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=29.49 E-value=37 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEAL 98 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al 98 (119)
...++.-+|.+|+-+++|++|+..+++++
T Consensus 200 k~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 200 QAAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 34567778889999999999999999987
No 342
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.71 E-value=97 Score=22.56 Aligned_cols=30 Identities=13% Similarity=-0.087 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 70 NSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
.++++..+|.|..++|+..+|+..++++..
T Consensus 363 ~AEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 392 (478)
T 3hdx_A 363 LEDITLLRAEALCALNRSTEAVSYLNMIRT 392 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 367899999999999999999988888654
No 343
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=25.93 E-value=1.1e+02 Score=18.12 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+.+......+...+..| .|+.|.-...++++.
T Consensus 14 ~~A~~dL~~A~~~l~~g--~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHG--FYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHH
Confidence 44566666777778877 888888777777765
No 344
>3nqp_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Probab=25.10 E-value=1.9e+02 Score=21.21 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccCC---------Cc---chHHHHHHHHHHHHHhc------------CHHHHHHHHHHHHh
Q 033440 49 YSDAIDCYTRAINQNVLS---------DS---ENSVLYANRAHVNLLLG------------NYRRAFTDAEEALK 99 (119)
Q Consensus 49 ~~~A~~~~~~al~~~~~~---------~~---~~~~~~~~~a~~~~~l~------------~~~~A~~~~~~al~ 99 (119)
|+..+..++.|+...|.. .. ....++.-+|.+|+-.+ +|.+|+..+++++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~g~~~~~~~~~~~A~~~a~~vi~ 241 (514)
T 3nqp_A 167 MTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLN 241 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCTTSSCTTSSCCHHHHHHHHHHHHHHHHHCCBTTBCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCcccccHHHHHHHHHHHHHHhCCcccCCCccchHHHHHHHHHHHHHHh
No 345
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.10 E-value=82 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHh
Q 033440 71 SVLYANRAHVNLLLG--NYRRAFTDAEEALK 99 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~--~~~~A~~~~~~al~ 99 (119)
++++..+|.|+.++| +..+|+.+++++.+
T Consensus 335 aEv~Li~AEA~~~~gg~~~~~A~~~lN~vR~ 365 (454)
T 3myv_A 335 SEVYLIAAEAGCKLGGDAAVQGLGYLNEIVK 365 (454)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 467888888888888 77788877776654
No 346
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=24.89 E-value=1.2e+02 Score=18.24 Aligned_cols=60 Identities=8% Similarity=-0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
+-+....+|..+ |.+..+..+...-+...+ .| ......+.....-.+..+|...+++-.+
T Consensus 43 LeeASrlyf~~~--n~~~m~~~L~pLh~~l~~-~P---eT~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 43 LEEASRLYFGER--NVKGMFEVLEPLHAMMER-GP---QTLKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SC---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--CHHHHHHHHHHHHHHHcc-CC---CCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455667887 999999888666443111 23 2233333443334456777777776653
No 347
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.65 E-value=1.3e+02 Score=18.62 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
..+.-+..-|..+...| ++.+|...|..+|..
T Consensus 99 ~~AlfYe~wA~~lE~~g--~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQG--ELQHASAVLQRGIQN 130 (152)
T ss_dssp TBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc
Confidence 34555666688888888 999999999999987
No 348
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=23.85 E-value=86 Score=16.25 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHhhccCCCcc-hHHHHHHHHHHHHHhcCHHHHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNYRRAF 91 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~ 91 (119)
..++|..+.+- ++. .+. .-.+-.-|...+++.|+|++|+
T Consensus 21 cH~EA~tIA~~-L~~----~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADW-LAQ----EECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHH-HHT----SSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHH-HHh----CCCHHHHHHHHHHHHHHccchHhHhh
Confidence 56777766544 333 333 3334455677788889999886
No 349
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.76 E-value=84 Score=22.85 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhcCH-HHHHHHHHHHHh
Q 033440 70 NSVLYANRAHVNLLLGNY-RRAFTDAEEALK 99 (119)
Q Consensus 70 ~~~~~~~~a~~~~~l~~~-~~A~~~~~~al~ 99 (119)
.++++..+|.|+.++|+. .+|+.+++++.+
T Consensus 356 ~aEvyLi~AEA~~~~g~~~~~A~~~lN~vR~ 386 (477)
T 3mcx_A 356 LSEVYLNAAEAGLKKGTDIEEAQGYLNDIIS 386 (477)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 357888899999988887 888888888766
No 350
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=23.53 E-value=1.2e+02 Score=22.09 Aligned_cols=29 Identities=7% Similarity=-0.008 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440 71 SVLYANRAHVNLLLGNYRRAFTDAEEALK 99 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 99 (119)
++++...|.|..++|+..+|+.+.+++.+
T Consensus 361 AEvlL~~AEA~~~~g~~~~A~~~lN~VR~ 389 (481)
T 3jq1_A 361 ADVLLMLAEAYMNKGALDTSIGYINQIRR 389 (481)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCChHHHHHHHHHHHH
Confidence 58999999999999999999998888754
No 351
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.43 E-value=1.4e+02 Score=22.85 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440 50 SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115 (119)
Q Consensus 50 ~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~ 115 (119)
.++...+.+.... ..++...-...+.+ ++.|++..|...++++-.-.+......|-+|+++
T Consensus 269 ~~~~~~~~~~~~~----~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~ 329 (618)
T 1qsa_A 269 DEQAKWRDDAIMR----SQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL 329 (618)
T ss_dssp HHHHHHHHHHHHT----CCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH
T ss_pred hHHHHHHHhcccc----CCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHH
Confidence 3444445544433 23232233333344 4679999999998876554445577777777654
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.32 E-value=1.7e+02 Score=19.55 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=41.7
Q ss_pred CCCChhhHHhHHHHHHhcH---HH----HHHHHHH-HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 033440 10 EPKTESEKADLDAIAALKE---SA----AIELKEK-GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81 (119)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~-g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~ 81 (119)
.++.+.++..++.+....+ +. -...... -.++.++| .|++|.+.+.+...- ++.+-.+-..+..+-
T Consensus 85 lTPLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~--~f~kA~eiLkr~~~~----~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 85 LTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNK--EFEKASKILKKHMSK----DPTTQKLRNDLLNII 158 (235)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHSTT----CGGGHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHhcC----CCCchHHHHHHHHHH
Confidence 3445566666666655431 21 1222222 33456666 999999999999887 666666666665554
Q ss_pred HHhc
Q 033440 82 LLLG 85 (119)
Q Consensus 82 ~~l~ 85 (119)
.+.+
T Consensus 159 ~~Kd 162 (235)
T 3bu8_A 159 REKN 162 (235)
T ss_dssp HHTC
T ss_pred hccC
Confidence 4433
No 353
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.82 E-value=1.1e+02 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Q 033440 71 SVLYANRAHVNLLLG-NYRRAFTDAEEALK 99 (119)
Q Consensus 71 ~~~~~~~a~~~~~l~-~~~~A~~~~~~al~ 99 (119)
++++..+|.|+.++| +..+|+.+++++..
T Consensus 321 aEvyLi~AEA~~~~gg~~~~A~~~lN~vR~ 350 (460)
T 3snx_A 321 AEMYLIEAEAKVRDGVALDQAVAPLNTLRT 350 (460)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 468888999999999 89999888887765
No 354
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.52 E-value=1.6e+02 Score=19.61 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440 76 NRAHVNLLLGNYRRAFTDAEEALKLCP 102 (119)
Q Consensus 76 ~~a~~~~~l~~~~~A~~~~~~al~l~p 102 (119)
.++......++|++++....++...++
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v~~~~~ 36 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKVAGMDV 36 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcccC
Confidence 344555556777777776666666554
No 355
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=21.50 E-value=1.2e+02 Score=17.18 Aligned_cols=35 Identities=6% Similarity=0.257 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440 48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89 (119)
Q Consensus 48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 89 (119)
+...++...-.+++. +|++|.++. ....++++|.-
T Consensus 31 ~~~~~l~~Al~~L~~----~psNPa~LA---e~Qa~lseynl 65 (92)
T 2g0u_A 31 DLNKQLQDAQANLTK----NPSDPTALA---NYQMIMSEYNL 65 (92)
T ss_dssp HHHHHHHHHHHHHHH----STTCHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCCCHHHHH---HHHHHHHHHHH
Confidence 555556656666777 899998744 44444555443
No 356
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.10 E-value=1.6e+02 Score=18.42 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHH--hhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440 27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI--NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC 101 (119)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 101 (119)
||.....|...+... + + +...|.... .+ ....+..|..-|..+...|++.+|.+.|+.++.-+
T Consensus 62 D~RyLklWl~ya~~~---~--~---p~~if~~L~~~~I----G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC---N--E---PLDMYSYLHNQGI----GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHHHHC---S--C---HHHHHHHHHHTTS----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc---C--C---HHHHHHHHHHCCc----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 566666665555432 3 4 334444433 33 56778888899999999999999999999999866
No 357
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.21 E-value=2e+02 Score=19.26 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440 75 ANRAHVNLLLGNYRRAFTDAEEALKLCPT 103 (119)
Q Consensus 75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 103 (119)
..+|......++|++.+....++...++.
T Consensus 12 v~~AklaeqaeRyddM~~~mk~v~~~~~e 40 (236)
T 3iqu_A 12 IQKAKLAEQAERYEDMAAFMKGAVEKGEE 40 (236)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 44566667778888888888888877664
No 358
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=20.12 E-value=2e+02 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440 29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62 (119)
Q Consensus 29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~ 62 (119)
+....+++++..++++| ++++|.-++-.++-+
T Consensus 96 ~~~~ky~~~A~~~~~~g--~~~~A~~~LG~a~Hy 127 (370)
T 2wxu_A 96 SQIRKFSALARYEWQRG--NYKQATFYLGEAMHY 127 (370)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 35677899999999988 999999998888855
Done!