BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033441
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 202 bits (514), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 93/118 (78%), Positives = 111/118 (94%)
Query: 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFD 60
M+S +QV+ASHILIKHQGSRRKASWKDPEG++I TTRE+AV QL++IR+DIVSGKA F+
Sbjct: 21 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80
Query: 61 EVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct: 81 EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 138
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 3/114 (2%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
QVR SH+LIK+ SR+ SWK P+G IS T R+ ++ L+ + I+SG+ K E+A+
Sbjct: 67 QVRVSHLLIKNNQSRKPKSWKSPDG--ISRT-RDESIQILKKHLERILSGEVKLSELANT 123
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
SDCSS RGGDLG F +GQMQ PFEEA +NL +GE+S +++T+SGVH++ RTG
Sbjct: 124 ESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 5 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 60
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 61 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 113
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 49 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 104
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 105 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 157
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 14 RVRCSHLLVKHSQSRRPSSWRQEQ----ITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 70 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 57 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 112
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 113 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 165
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 58 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 14 RVRCSHLLVKHSQSRRPSSWRQEQ----ITRTQEEALELINGYIQKIKSGEEDFESLASQ 69
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 70 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 122
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 52 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 107
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 108 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 160
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 58 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 53 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 108
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 109 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 161
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+ H SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVAHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 58 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 113
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQM KPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 114 FSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHIILRT 166
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SDCSSAK GDLG F RGQ QKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDCSSAKARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 4/113 (3%)
Query: 6 QVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASR 65
+VR SH+L+KH SRR +SW+ + T+E A+ + I SG+ F+ +AS+
Sbjct: 54 RVRCSHLLVKHSQSRRPSSWRQEK----ITRTKEEALELINGYIQKIKSGEEDFESLASQ 109
Query: 66 LSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118
SD SSAK GDLG F RGQMQKPFE+A++ L+ GE+S V TDSG+H+I+RT
Sbjct: 110 FSDASSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVA 63
+ ++RA+H+L+K GSR S + G ++ T E A+ +LQ I SG+ F+E A
Sbjct: 2 SEKLRAAHLLVKFSGSRNPVSRR--TGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAA 59
Query: 64 SRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 117
S+ SDC S GGDLG F G+M KPFE+A LKIG+IS +V TDSG+H+I R
Sbjct: 60 SQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKR 113
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 27/119 (22%)
Query: 2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDE 61
S A++++ SHIL+K QG + A+++ + +G+ KF +
Sbjct: 5 SMADKIKCSHILVKKQG-------------------------EALAVQERLKAGE-KFGK 38
Query: 62 VASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119
+A LS D SAKR G LG FGRG+M KPFE+A + L++GE+SE V ++ G H+I R G
Sbjct: 39 LAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 8 RASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS 67
+ASHILIK K+ D EG + A + + I+ ++ +KF E+A + S
Sbjct: 9 KASHILIK-----VKSKKSDKEG-----LDDKEAKQKAEEIQKEVSKDPSKFGEIAKKES 58
Query: 68 -DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
D SAK+ G+LG +GQ K FE+A + LK GE+SEVV + G H+I
Sbjct: 59 MDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 58 KFDEVASRLSDCSSAKRGGDLGNFGR-GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIM 116
KF+++A S SSA +GGDLG F + GQM + F +A + LK GE+S+ V T G H+I
Sbjct: 30 KFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIK 89
Query: 117 RT 118
+T
Sbjct: 90 KT 91
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 57 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
A F ++A + S C S KRGGDLG F +GQM F++ ++ + E + + T G H+I
Sbjct: 28 ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58 KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
+F+EVA++ S+ A++GGDLG RG M PF+EA + L + + + V TD G
Sbjct: 28 RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 86
Query: 112 VHLIMRTG 119
H+IM G
Sbjct: 87 YHIIMVEG 94
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58 KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
+F+EVA++ S+ A++GGDLG RG M PF+EA + L + + + V TD G
Sbjct: 33 RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 91
Query: 112 VHLIMRTG 119
H+IM G
Sbjct: 92 YHIIMVEG 99
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 58 KFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDS------G 111
+F+EVA++ S+ A++GGDLG RG M PF+EA + L + + + V TD G
Sbjct: 36 RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFG 94
Query: 112 VHLIMRTG 119
H+IM G
Sbjct: 95 YHIIMVEG 102
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 57 AKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEV-VDTDSGVHL 114
AKF E+A S D S +GG+LG F + M KPF +A + LK G I+ V T+ G H+
Sbjct: 143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHV 202
Query: 115 IMR 117
I++
Sbjct: 203 ILK 205
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEV 62
S +V A HIL+K I N + A +L+ I DI SGK F
Sbjct: 5 SVTEVHARHILLK--------------PSPIXND--QQARLKLEEIAADIKSGKTTFAAA 48
Query: 63 ASRLS-DCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLI 115
A S D SA +GGDLG F +A L G+IS V + G HLI
Sbjct: 49 AKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 102
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21
21)
Length = 326
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 8 RASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS 67
R SH+ I + + W+DP + I N T + + AI D +S E+ S
Sbjct: 17 RGSHMYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLS----VSELVSVAW 72
Query: 68 DCSSAKRGGD 77
+S RGGD
Sbjct: 73 ASASTFRGGD 82
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 10 SHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC 69
SH+ I + + W+DP + I N T + + AI D +S E+ S
Sbjct: 2 SHMYIGPEVPKEDLIWQDPLPQPIYNPTEQDIIDLKFAIADSGLS----VSELVSVAWAS 57
Query: 70 SSAKRGGD 77
+S RGGD
Sbjct: 58 ASTFRGGD 65
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 22 KASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKF 59
K ++K + RV E S I DIVSGKA F
Sbjct: 367 KVAYKLVKDRVFDKFIEERYASYKDGIGADIVSGKADF 404
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 HILIKHQGSRRKASWKDPEGRVISNTTRESAVSQ 44
H+L+ G ++K S DP+G + + T E VS+
Sbjct: 221 HMLMSLSGPKKKMSKSDPQGAIFMDDT-EQEVSE 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,210,981
Number of Sequences: 62578
Number of extensions: 110982
Number of successful extensions: 258
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 34
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)