Query 033441
Match_columns 119
No_of_seqs 102 out of 1019
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13616 Rotamase_3: PPIC-type 100.0 7.9E-29 1.7E-33 164.8 9.1 102 3-119 12-115 (117)
2 PTZ00356 peptidyl-prolyl cis-t 100.0 3.9E-28 8.3E-33 161.2 12.3 114 3-119 2-115 (115)
3 PF00639 Rotamase: PPIC-type P 99.9 6.8E-27 1.5E-31 150.2 10.6 94 11-119 1-95 (95)
4 TIGR02933 nifM_nitrog nitrogen 99.9 7.9E-26 1.7E-30 168.1 11.9 102 1-119 118-219 (256)
5 PRK15441 peptidyl-prolyl cis-t 99.9 1.1E-25 2.5E-30 144.2 9.8 89 5-119 3-91 (93)
6 KOG3259 Peptidyl-prolyl cis-tr 99.9 3.2E-25 7E-30 150.2 9.6 112 3-118 51-162 (163)
7 PRK10770 peptidyl-prolyl cis-t 99.9 3.5E-24 7.6E-29 167.8 11.3 104 2-119 151-254 (413)
8 PRK10770 peptidyl-prolyl cis-t 99.9 1.2E-22 2.6E-27 159.1 8.9 100 4-119 264-364 (413)
9 PRK04405 prsA peptidylprolyl i 99.9 9.1E-22 2E-26 149.2 9.8 90 4-119 142-235 (298)
10 PRK02998 prsA peptidylprolyl i 99.9 2.3E-21 5E-26 146.0 10.2 89 5-119 133-222 (283)
11 PRK03002 prsA peptidylprolyl i 99.9 3.2E-21 6.9E-26 145.4 10.0 89 5-119 135-224 (285)
12 PRK03095 prsA peptidylprolyl i 99.9 4.6E-21 1E-25 144.6 10.1 89 5-119 131-220 (287)
13 PRK00059 prsA peptidylprolyl i 99.8 1.1E-19 2.4E-24 139.1 10.4 91 3-119 193-286 (336)
14 PRK10788 periplasmic folding c 99.8 4.6E-19 1E-23 145.3 10.3 109 1-119 225-357 (623)
15 PRK01326 prsA foldase protein 99.8 1.9E-19 4.2E-24 137.1 7.4 74 43-119 157-238 (310)
16 TIGR02925 cis_trans_EpsD pepti 99.8 1.1E-18 2.3E-23 127.5 9.5 92 1-119 133-224 (232)
17 KOG3258 Parvulin-like peptidyl 99.7 5.7E-18 1.2E-22 110.0 7.7 88 4-118 37-130 (133)
18 PRK12450 foldase protein PrsA; 99.7 7.2E-18 1.6E-22 128.5 9.5 87 5-119 147-241 (309)
19 COG0760 SurA Parvulin-like pep 99.5 2.7E-15 5.8E-20 110.9 0.6 91 4-119 166-261 (320)
20 PF13145 Rotamase_2: PPIC-type 99.0 6.1E-10 1.3E-14 72.3 5.0 58 57-119 49-107 (121)
21 PRK10788 periplasmic folding c 95.0 0.13 2.8E-06 42.8 7.7 41 79-119 532-577 (623)
22 PF12075 KN_motif: KN motif; 67.4 2.8 6E-05 22.4 0.8 9 106-114 4-12 (39)
23 PF02609 Exonuc_VII_S: Exonucl 48.0 46 0.001 18.5 3.7 29 40-68 3-31 (53)
24 PHA02152 hypothetical protein 41.9 12 0.00026 23.4 0.6 33 74-106 20-54 (96)
25 TIGR00258 inosine/xanthosine t 41.4 38 0.00082 23.8 3.2 41 46-87 104-145 (163)
26 PRK03114 NTPase; Reviewed 41.2 61 0.0013 22.9 4.2 41 46-87 105-146 (169)
27 PRK03941 NTPase; Reviewed 40.0 38 0.00081 24.1 3.0 42 45-87 108-150 (174)
28 PF05225 HTH_psq: helix-turn-h 39.0 61 0.0013 17.4 3.2 26 44-69 4-29 (45)
29 COG1986 Inosine/xanthosine tri 36.2 47 0.001 23.7 3.0 41 46-87 110-151 (175)
30 PRK05074 inosine/xanthosine tr 36.2 49 0.0011 23.4 3.1 41 46-87 109-150 (173)
31 COG0782 Uncharacterized conser 34.4 60 0.0013 22.3 3.3 30 88-118 117-146 (151)
32 PF03918 CcmH: Cytochrome C bi 33.9 1.1E+02 0.0023 21.1 4.5 51 33-83 51-108 (148)
33 PF13026 DUF3887: Protein of u 32.6 75 0.0016 20.5 3.3 30 38-69 4-33 (101)
34 TIGR00370 conserved hypothetic 32.6 20 0.00043 25.9 0.7 12 105-116 165-176 (202)
35 TIGR01280 xseB exodeoxyribonuc 31.1 98 0.0021 18.2 3.4 30 39-68 4-33 (67)
36 PF01931 NTPase_I-T: Protein o 30.6 71 0.0015 22.4 3.2 41 46-87 106-147 (168)
37 PRK05753 nucleoside diphosphat 28.6 90 0.0019 21.0 3.3 23 88-111 93-115 (137)
38 PRK06770 hypothetical protein; 28.4 68 0.0015 23.0 2.8 39 42-83 115-153 (180)
39 PRK14066 exodeoxyribonuclease 28.4 1.1E+02 0.0025 18.5 3.4 32 37-68 5-36 (75)
40 smart00796 AHS1 Allophanate hy 28.3 25 0.00055 25.3 0.6 12 105-116 175-186 (201)
41 PRK00977 exodeoxyribonuclease 28.0 1.1E+02 0.0025 18.6 3.4 34 35-68 9-42 (80)
42 PF04282 DUF438: Family of unk 27.7 74 0.0016 19.2 2.5 23 45-68 2-24 (71)
43 PRK14067 exodeoxyribonuclease 25.8 1.3E+02 0.0029 18.4 3.5 34 36-69 7-40 (80)
44 PRK14068 exodeoxyribonuclease 25.6 1.4E+02 0.003 18.2 3.5 32 37-68 7-38 (76)
45 PF01272 GreA_GreB: Transcript 25.2 1.1E+02 0.0023 18.2 3.0 28 88-116 44-71 (77)
46 PRK14063 exodeoxyribonuclease 25.2 1.4E+02 0.0031 18.1 3.5 32 37-68 6-37 (76)
47 PRK14069 exodeoxyribonuclease 24.3 1.4E+02 0.0031 19.1 3.5 33 36-68 8-40 (95)
48 PF02682 AHS1: Allophanate hyd 24.1 18 0.0004 26.0 -0.8 13 105-117 174-186 (202)
49 PF04218 CENP-B_N: CENP-B N-te 23.7 1E+02 0.0022 17.1 2.5 24 46-70 13-36 (53)
50 COG2152 Predicted glycosylase 23.5 56 0.0012 25.4 1.7 27 90-116 196-222 (314)
51 PF09824 ArsR: ArsR transcript 22.4 1.2E+02 0.0027 21.2 3.1 35 37-71 102-136 (160)
52 COG4634 Uncharacterized protei 21.6 1.2E+02 0.0026 20.0 2.7 41 57-103 56-105 (113)
53 PF00254 FKBP_C: FKBP-type pep 21.6 93 0.002 18.7 2.2 23 83-105 41-63 (94)
54 PRK14064 exodeoxyribonuclease 21.6 1.8E+02 0.0039 17.6 3.4 32 37-68 7-38 (75)
55 PRK01170 phosphopantetheine ad 21.2 1.8E+02 0.004 22.7 4.2 42 45-87 256-298 (322)
56 PF04255 DUF433: Protein of un 20.5 1.5E+02 0.0033 16.5 2.8 23 45-68 21-43 (56)
57 PRK05892 nucleoside diphosphat 20.4 1.8E+02 0.004 20.0 3.7 29 88-117 123-154 (158)
58 PF04014 Antitoxin-MazE: Antid 20.1 1.6E+02 0.0034 15.6 3.1 29 86-115 11-39 (47)
No 1
>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A.
Probab=99.96 E-value=7.9e-29 Score=164.85 Aligned_cols=102 Identities=39% Similarity=0.612 Sum_probs=83.4
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF 81 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~ 81 (119)
.|++++++||+|+.+.. +..+.++|+++|++|+++|++| ++|++||++||+++ ++.+||++||+
T Consensus 12 ~~~~v~~~~I~i~~~~~--------------~~~~~~~ak~~a~~i~~~l~~G-~dF~~lA~~yS~D~~s~~~gG~lgw~ 76 (117)
T PF13616_consen 12 APDEVKVSHILIPVPDA--------------SSRSKEEAKKKADSILKQLKSG-ADFAELAKKYSQDPSSAENGGDLGWM 76 (117)
T ss_dssp E--EEEEEEEEESS-------------------------HHHHHHHHHHHHCT-CCHHHHHHHHTSSCGTGGGTTEEEEE
T ss_pred CcCeEEEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCCcccccCCccccc
Confidence 46799999999998541 1456788899999999999987 79999999999864 59999999999
Q ss_pred c-CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 G-RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~-~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
. .++|+++|.+++++|++|++|.||++++|||||+|++
T Consensus 77 ~~~~~~~~~f~~~~~~l~~G~is~~v~s~~G~hIikv~d 115 (117)
T PF13616_consen 77 SEPSQLPPEFEEAAFSLKVGEISGPVESPNGYHIIKVTD 115 (117)
T ss_dssp ETTTSSSCHHHHHHHHS-TTECTCEEEETTEEEEEEEEE
T ss_pred cCCccccHHHHHHHHcCCCCCCCCeEEECCEEEEEEEEe
Confidence 9 9999999999999999999999999999999999975
No 2
>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
Probab=99.96 E-value=3.9e-28 Score=161.23 Aligned_cols=114 Identities=53% Similarity=0.895 Sum_probs=99.4
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG 82 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~ 82 (119)
.|++++++||||++.+..+++..+.++.. ......++++++.|+++|+.|+.+|+++|++||+++++.+||++||+.
T Consensus 2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~ 78 (115)
T PTZ00356 2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPV---TRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFG 78 (115)
T ss_pred CCcEEEEEEEEEecCCCcCcccccccccc---cccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEc
Confidence 58999999999999876555444332211 367889999999999999998559999999999988888999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
..+|+|+|.++++.|++|++|+||++++|||||+++.
T Consensus 79 ~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~~ 115 (115)
T PTZ00356 79 RGQMQKPFEDAAFALKVGEISDIVHTDSGVHIILRLA 115 (115)
T ss_pred ccccCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEcC
Confidence 9999999999999999999999999999999999973
No 3
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=99.95 E-value=6.8e-27 Score=150.17 Aligned_cols=94 Identities=38% Similarity=0.644 Sum_probs=87.1
Q ss_pred eEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhC-CccccccCCccccccCCCCcHH
Q 033441 11 HILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLGNFGRGQMQKP 89 (119)
Q Consensus 11 ~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S-~~~~~~~gG~~g~~~~~~l~~~ 89 (119)
||||+.+.. ..+.++++++|++|+.+|+.|..+|+++|++|| +.+++.+||++||+..++|+++
T Consensus 1 HIl~~~~~~---------------~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~ 65 (95)
T PF00639_consen 1 HILVKPPPS---------------DEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPE 65 (95)
T ss_dssp EEEEESTTS---------------CCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHH
T ss_pred CEEEECCCc---------------hhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHH
Confidence 899998651 578899999999999999999645999999999 5889999999999999999999
Q ss_pred HHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 90 FEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 90 ~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
|.+++++|++|++|.||++++|||||+|.|
T Consensus 66 ~~~~~~~l~~Gevs~pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 66 FEKALFALKPGEVSKPIETDNGYHIIKVED 95 (95)
T ss_dssp HHHHHHTSTTTSBEEEEEETTEEEEEEEEE
T ss_pred HHHHHHhCCCCCcCCCEEECCEEEEEEEEC
Confidence 999999999999999999999999999975
No 4
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=99.93 E-value=7.9e-26 Score=168.10 Aligned_cols=102 Identities=28% Similarity=0.459 Sum_probs=91.9
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..|+.++++||+|+.++ ...+.++++|+.|+++|++|+.+|++||++||+++++.+||++||
T Consensus 118 ~~~~e~~~~~hIli~~~~-----------------~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~ 180 (256)
T TIGR02933 118 FKRPEQRLTRHLLLTVNE-----------------DDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGW 180 (256)
T ss_pred cCCCCeEEEEEEEEECCc-----------------ccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCC
Confidence 456788899999999742 234667889999999999875689999999999888899999999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+..++|||+|.+++++|++|++|+||++++|||||+|.+
T Consensus 181 ~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~ 219 (256)
T TIGR02933 181 VSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEA 219 (256)
T ss_pred cCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEee
Confidence 999999999999999999999999999999999999974
No 5
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=99.93 E-value=1.1e-25 Score=144.25 Aligned_cols=89 Identities=34% Similarity=0.527 Sum_probs=82.4
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG 84 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~ 84 (119)
.++.++||++.. +++|+.|+++|+.| ++|+++|++||+++++..||++||+..+
T Consensus 3 ~~~~~~~I~~~~-------------------------~~~A~~i~~~l~~g-~~F~~la~~~S~~~~~~~gG~lg~~~~~ 56 (93)
T PRK15441 3 KTAAALHILVKE-------------------------EKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQG 56 (93)
T ss_pred CceEEEEEEECC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhcCccceeeccc
Confidence 578999999974 36788999999988 7999999999997777789999999999
Q ss_pred CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+||++|.++++.|++|++|+||++++|||||+|++
T Consensus 57 ~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~~ 91 (93)
T PRK15441 57 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 91 (93)
T ss_pred ccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEEEe
Confidence 99999999999999999999999999999999986
No 6
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-25 Score=150.22 Aligned_cols=112 Identities=56% Similarity=0.991 Sum_probs=105.1
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG 82 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~ 82 (119)
.|+++++.||||++..+..+++|.... + ..+.++|...++.+.+.|++|..+|.+||+++|+|.++..|||||||.
T Consensus 51 ~p~~Vr~sHlLVKH~~SRrpsSwr~~~--i--t~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fg 126 (163)
T KOG3259|consen 51 EPARVRCSHLLVKHKGSRRPSSWRSEN--I--TRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFG 126 (163)
T ss_pred CccceeEEEEEEccccCCCCccccccc--c--hhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccc
Confidence 478999999999999999999997543 2 678899999999999999999889999999999999999999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEe
Q 033441 83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~ 118 (119)
+++|-+.|+++.|+|++|++|+||.|+.|+|||+-.
T Consensus 127 rgqMqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~ 162 (163)
T KOG3259|consen 127 RGQMQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT 162 (163)
T ss_pred cccccccchhhhhhcccccccCceecCCceEEEEec
Confidence 999999999999999999999999999999999864
No 7
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.91 E-value=3.5e-24 Score=167.82 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=94.4
Q ss_pred CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441 2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF 81 (119)
Q Consensus 2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~ 81 (119)
..+++++++||+|+.+..++ .....+++.+|+.|+.+|++| ++|+++|+.||+++++.+||++||+
T Consensus 151 ~~~~~~~~~~I~i~~~~~~s-------------~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~a~~gGdlg~~ 216 (413)
T PRK10770 151 DASTELNLSHILIPLPENPT-------------QDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQALKGGQMGWG 216 (413)
T ss_pred cccceEEEEEEEEeCCCCCC-------------HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcccccCCcCCcc
Confidence 45789999999999764321 456778889999999999998 7999999999998889999999999
Q ss_pred cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
..++|||+|.+++++|++|++|+||+++.|||||+|.+
T Consensus 217 ~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~ 254 (413)
T PRK10770 217 RIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVND 254 (413)
T ss_pred ccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEee
Confidence 99999999999999999999999999999999999974
No 8
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=99.88 E-value=1.2e-22 Score=159.15 Aligned_cols=100 Identities=37% Similarity=0.475 Sum_probs=89.2
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCcccccc
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFG 82 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~ 82 (119)
.++++++||+|++.+ ....+.|++++++|+.+|..|..+|+++|++||++ .++.+||++||+.
T Consensus 264 ~~e~~~~hIli~~~~----------------~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~~~ 327 (413)
T PRK10770 264 VTEVHARHILLKPSP----------------IMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAT 327 (413)
T ss_pred HHhhhhhheEECCCC----------------CCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCccC
Confidence 457999999999753 22346788999999999998855999999999985 5788999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.+.|+|+|..++++|++|++|.||.+++|||||+|++
T Consensus 328 ~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~ 364 (413)
T PRK10770 328 PDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLD 364 (413)
T ss_pred ccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEee
Confidence 9999999999999999999999999999999999985
No 9
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=99.87 E-value=9.1e-22 Score=149.25 Aligned_cols=90 Identities=26% Similarity=0.454 Sum_probs=78.9
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCcccccc
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFG 82 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~ 82 (119)
+++++++||+|+. ++.|+.++++|++| ++|++||++||.+ .++.+||++||+.
T Consensus 142 ~~~~~v~hIlv~~-------------------------~~~A~~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~ 195 (298)
T PRK04405 142 QPKVTVQHILVSK-------------------------KSTAETVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFD 195 (298)
T ss_pred hhhEEEEEEEecC-------------------------hHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccc
Confidence 3579999999984 24577899999998 7999999999985 5677999999885
Q ss_pred C--CCCcHHHHHHHhcCCCCCcc-ceeEcCCeEEEEEEeC
Q 033441 83 R--GQMQKPFEEATYNLKIGEIS-EVVDTDSGVHLIMRTG 119 (119)
Q Consensus 83 ~--~~l~~~~~~av~~l~~G~is-~pi~s~~G~hIv~v~~ 119 (119)
. ++|+|+|.+++++|++|+++ +||++++|||||+|++
T Consensus 196 ~~~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~ 235 (298)
T PRK04405 196 STDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIK 235 (298)
T ss_pred cCCCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEee
Confidence 4 68999999999999999995 8999999999999974
No 10
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=99.86 E-value=2.3e-21 Score=146.02 Aligned_cols=89 Identities=35% Similarity=0.637 Sum_probs=80.6
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCccccccC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNFGR 83 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~~~ 83 (119)
++++++||+|+.. +.|+.++++|++| ++|+++|+.||.+ .++.+||++||+..
T Consensus 133 ~~~~v~~Ilv~~e-------------------------~~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gG~lg~~~~ 186 (283)
T PRK02998 133 PEMKVSHILVKDE-------------------------KTAKEVKEKVNNG-EDFAALAKQYSEDTGSKEQGGEISGFAP 186 (283)
T ss_pred cceEEEEEEeCCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCCCcCC
Confidence 3689999999842 4577899999988 7999999999985 46789999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
++++|+|.+++++|++|++|+||++++|||||+|++
T Consensus 187 ~~l~~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~ 222 (283)
T PRK02998 187 GQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTD 222 (283)
T ss_pred CcchHHHHHHHHcCCCCCcCCceEECCEEEEEEEec
Confidence 999999999999999999999999999999999985
No 11
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=3.2e-21 Score=145.39 Aligned_cols=89 Identities=39% Similarity=0.694 Sum_probs=80.7
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR 83 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~ 83 (119)
++++++||+|+.+ +.|+.++.+|++| .+|+++|++||.++ ++.+||++||+..
T Consensus 135 ~~~~~~~Ilv~~~-------------------------~~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~ 188 (285)
T PRK03002 135 PEIKASHILVSDE-------------------------NEAKEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNS 188 (285)
T ss_pred cceEEEEEEECCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceecc
Confidence 4689999999842 4567889999988 79999999999964 6789999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus 189 ~~l~p~~~~a~~~L~~GevS~pI~t~~G~hIikv~~ 224 (285)
T PRK03002 189 GRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLTD 224 (285)
T ss_pred ccCCHHHHHHHHcCCCCCcCCcEEECCEEEEEEEee
Confidence 999999999999999999999999999999999975
No 12
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=99.85 E-value=4.6e-21 Score=144.64 Aligned_cols=89 Identities=40% Similarity=0.725 Sum_probs=80.3
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR 83 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~ 83 (119)
++++++||+|+.. ..|..++.+|+.| .+|+++|++||.++ ++.+||++||+..
T Consensus 131 ~~v~~~hIlv~~~-------------------------~~A~~i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~ 184 (287)
T PRK03095 131 PEIKASHILVKDE-------------------------ATAKKVKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGA 184 (287)
T ss_pred ccEEEEEEEeCCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCccccccCCcCceecc
Confidence 3599999999842 3567888999988 69999999999964 6788999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
++|||.|.+++++|++|++|+||++++|||||+|++
T Consensus 185 ~~L~~~~~~al~~L~~GevS~pi~t~~G~hIikv~~ 220 (287)
T PRK03095 185 GKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTD 220 (287)
T ss_pred ccccHHHHHHHHhCCCCCcCCceEECCEEEEEEEee
Confidence 999999999999999999999999999999999985
No 13
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=99.82 E-value=1.1e-19 Score=139.13 Aligned_cols=91 Identities=32% Similarity=0.511 Sum_probs=82.6
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc-cccccCCccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC-SSAKRGGDLGNF 81 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~-~~~~~gG~~g~~ 81 (119)
.|++++++||+++.+ +.|+++++++++| .+|+++|++||.+ .++.+||++||+
T Consensus 193 ~p~~~~v~~I~~~~~-------------------------~~a~~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~ 246 (336)
T PRK00059 193 KPNTMHLAHILVKTE-------------------------DEAKKVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDV 246 (336)
T ss_pred CcceEEEEEEEecCH-------------------------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccccc
Confidence 588999999999842 4678889999998 6999999999985 677899999999
Q ss_pred cC--CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GR--GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~--~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.. +.++|+|.+++++|++|++|+||.+++||||++|++
T Consensus 247 ~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~ 286 (336)
T PRK00059 247 PYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIK 286 (336)
T ss_pred ccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEe
Confidence 98 789999999999999999999999999999999974
No 14
>PRK10788 periplasmic folding chaperone; Provisional
Probab=99.79 E-value=4.6e-19 Score=145.29 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=88.2
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHH-----------------------HHHHHHHHHHHHHHhChh
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRE-----------------------SAVSQLQAIRDDIVSGKA 57 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~a~~~a~~l~~~l~~g~~ 57 (119)
|.+|++++++||+|+..... +...+++.+.. .+++.|+.++.+|++| +
T Consensus 225 f~~pe~~~i~yi~l~~~~~~--------~~~~vt~~ei~~~y~~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G-~ 295 (623)
T PRK10788 225 FMAPEQFKVSYIKLDAATMQ--------QKITVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKG-A 295 (623)
T ss_pred cCCcceEEEEEEEechhhhc--------CCCCCCHHHHHHHHHHHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCC-C
Confidence 67899999999999865321 11111122211 1345789999999998 7
Q ss_pred hHHHHHHHhCCc-cccccCCccccccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 58 KFDEVASRLSDC-SSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 58 ~F~~la~~~S~~-~~~~~gG~~g~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+|+++|++||++ .++.+||++||+.++.|+++|.++++ +++|++|+||++++|||||+|++
T Consensus 296 ~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~pv~t~~G~~Iikv~~ 357 (623)
T PRK10788 296 DFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDD 357 (623)
T ss_pred CHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcCCcEEECCeEEEEEEEe
Confidence 999999999985 58899999999999999999999988 68899999999999999999974
No 15
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=99.79 E-value=1.9e-19 Score=137.11 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhCCccccccCCccccccC-CCCcHHHHHHHhcCCCCCccceeEc------CCeEEE
Q 033441 43 SQLQAIRDDIVS-GKAKFDEVASRLSDCSSAKRGGDLGNFGR-GQMQKPFEEATYNLKIGEISEVVDT------DSGVHL 114 (119)
Q Consensus 43 ~~a~~l~~~l~~-g~~~F~~la~~~S~~~~~~~gG~~g~~~~-~~l~~~~~~av~~l~~G~is~pi~s------~~G~hI 114 (119)
+.|+.++.+|++ | ++|++||++||. ++.+||++||+.. .+||++|.+++|+|++|++|+||++ .+||||
T Consensus 157 ~~A~~i~~~l~~~G-~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~t~~~~~~~~GyhI 233 (310)
T PRK01326 157 DKAKSVLEEAKAEG-ADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVISVLDPTAYQSKYYI 233 (310)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCceecCCCCcCCceEEE
Confidence 567889999984 7 799999999999 5678999999987 5799999999999999999999987 679999
Q ss_pred EEEeC
Q 033441 115 IMRTG 119 (119)
Q Consensus 115 v~v~~ 119 (119)
|+|.+
T Consensus 234 ikv~~ 238 (310)
T PRK01326 234 VKVTK 238 (310)
T ss_pred EEEec
Confidence 99974
No 16
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=99.78 E-value=1.1e-18 Score=127.52 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..+++|+++||+|+.+ ...++.+++.+++| .+|+++++.++..+. ..+|.+||
T Consensus 133 f~~~~~~~~~hIlv~~~------------------------~~~a~~~~~~l~~g-~~f~~la~~~~~~~~-~~~~~~~~ 186 (232)
T TIGR02925 133 FAERKLYNLQEIALPPD------------------------MELLDELRAMVENG-KPLEDILAWLKAKNV-PFNASSAA 186 (232)
T ss_pred cCCCceEEEEEEEecCC------------------------hhHHHHHHHHHhcC-CCHHHHHHHhhhcCc-cccccccc
Confidence 56789999999999842 13567888899998 699999999886433 45678999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+..++|||+|.+++++|++|+|+ ||++++||||++|.+
T Consensus 187 ~~~~~l~~~~~~a~~~l~~G~is-~v~s~~G~hiikv~~ 224 (232)
T TIGR02925 187 RPAEQLPAEILAVLAKLKPGAPL-VVQGPNNVLILVLAD 224 (232)
T ss_pred CchhhCCHHHHHHHHhCCCCCeE-EeecCCceEEEEEec
Confidence 99999999999999999999999 899999999999975
No 17
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.7e-18 Score=110.01 Aligned_cols=88 Identities=36% Similarity=0.622 Sum_probs=76.7
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR 83 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~ 83 (119)
..-+.+||||-.-. -++.+.++.|++| ..|.++|.+||++. +.+||||||+++
T Consensus 37 gtaVKvRHiLCEKq-------------------------GKi~EA~eKLk~G-~~F~evAA~YSEdk-ar~GGDLGW~~R 89 (133)
T KOG3258|consen 37 GTAVKVRHILCEKQ-------------------------GKINEAMEKLKSG-MKFNEVAAQYSEDK-ARQGGDLGWMTR 89 (133)
T ss_pred cceEEEEEeeehhh-------------------------chHHHHHHHHHcc-cchHHHHHHhccCc-cccCCcccceec
Confidence 35688999998753 2567778889998 79999999999987 788999999999
Q ss_pred CCCcHHHHHHHhcCCCC------CccceeEcCCeEEEEEEe
Q 033441 84 GQMQKPFEEATYNLKIG------EISEVVDTDSGVHLIMRT 118 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G------~is~pi~s~~G~hIv~v~ 118 (119)
+.|.-.|.+++|+|+++ -.++||++.+|||||+|.
T Consensus 90 G~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvE 130 (133)
T KOG3258|consen 90 GSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVE 130 (133)
T ss_pred cccccchhhhhhcccccccCCccccCCCcccccceEEEEec
Confidence 99988899999999998 566788999999999985
No 18
>PRK12450 foldase protein PrsA; Reviewed
Probab=99.75 E-value=7.2e-18 Score=128.49 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=72.9
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHh-ChhhHHHHHHHhCCccccccCCccccccC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVS-GKAKFDEVASRLSDCSSAKRGGDLGNFGR 83 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~-g~~~F~~la~~~S~~~~~~~gG~~g~~~~ 83 (119)
++++++||++.. ++.|+.++++|++ | ++|++||++||.++ ..||++||...
T Consensus 147 ~~~~~~~I~~~~-------------------------~~~A~~i~~~l~~~G-~dF~~lAk~~S~~~--~~~g~~~f~~~ 198 (309)
T PRK12450 147 PTMTAEIMQFEK-------------------------EEDAKAALEAVKAEG-ADFAAIAKEKTIAA--DKKTTYTFDSG 198 (309)
T ss_pred ccceeEEEEeCC-------------------------HHHHHHHHHHHHhcC-CCHHHHHHHhCCCc--ccCCcccccCC
Confidence 468899988753 3567888889985 6 79999999999864 46889998764
Q ss_pred -CCCcHHHHHHHhcCCCCCccc------eeEcCCeEEEEEEeC
Q 033441 84 -GQMQKPFEEATYNLKIGEISE------VVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 -~~l~~~~~~av~~l~~G~is~------pi~s~~G~hIv~v~~ 119 (119)
++|+|+|.+++++|++|++|+ ||++++|||||+|++
T Consensus 199 ~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~ 241 (309)
T PRK12450 199 ETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTK 241 (309)
T ss_pred CCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEec
Confidence 579999999999999999998 457899999999975
No 19
>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.7e-15 Score=110.90 Aligned_cols=91 Identities=35% Similarity=0.508 Sum_probs=74.3
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhCh----hhHHHHHHHhCCccccc-cCCcc
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGK----AKFDEVASRLSDCSSAK-RGGDL 78 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~----~~F~~la~~~S~~~~~~-~gG~~ 78 (119)
.++++.+||++... ..+.++...++.+. .+|.++|++||.++... .||++
T Consensus 166 ~~~~~~~~i~~~~~-------------------------~~a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~ 220 (320)
T COG0760 166 VTEVQARHILVKAE-------------------------AKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLL 220 (320)
T ss_pred HHHHhhcccccCch-------------------------HhHHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccc
Confidence 46788999999864 23344444444432 69999999999976665 47788
Q ss_pred ccccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 79 GNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 79 g~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
||...+.|+|+|.++++.+++|+++.||++.+||||++|++
T Consensus 221 ~~~~~~~~~p~f~~a~~~~~~g~~~~pv~t~~g~~ii~v~~ 261 (320)
T COG0760 221 GWNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEK 261 (320)
T ss_pred cccCccccChHHHHHHHhccCcccccccccchHHHHHHHHh
Confidence 88999999999999999999999999999999999999864
No 20
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=99.01 E-value=6.1e-10 Score=72.32 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=44.3
Q ss_pred hhHHHHHHHhCCccccccCCccccccCC-CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 57 AKFDEVASRLSDCSSAKRGGDLGNFGRG-QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 57 ~~F~~la~~~S~~~~~~~gG~~g~~~~~-~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.+|..+++.++... .+.++.... .|+++|.++++.|+.|+||+||.+++|||||+|.+
T Consensus 49 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~~i~~~~~~~v~~v~~ 107 (121)
T PF13145_consen 49 EDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEVSGPIESGNGYYVVKVKE 107 (121)
T ss_dssp HHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-EEEEEEETTEEEEEEEEE
T ss_pred chHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCeeeeEEECCEEEEEEEEe
Confidence 58888888766542 234565554 68899999999999999999999999999999963
No 21
>PRK10788 periplasmic folding chaperone; Provisional
Probab=95.02 E-value=0.13 Score=42.80 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=32.1
Q ss_pred ccccCCCCcHHHHHHHhcCCCCCccceeEc-----CCeEEEEEEeC
Q 033441 79 GNFGRGQMQKPFEEATYNLKIGEISEVVDT-----DSGVHLIMRTG 119 (119)
Q Consensus 79 g~~~~~~l~~~~~~av~~l~~G~is~pi~s-----~~G~hIv~v~~ 119 (119)
+++++..+++.+..++|+++.|.++.|+.. ..|+.|++|.+
T Consensus 532 ~~~~r~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 577 (623)
T PRK10788 532 KTLSRTSQDDPLSQAAFALPLPAKDKPSYGMAQDMQGNVVLIALDE 577 (623)
T ss_pred cceecCCCChHHHHHHhcCCCCCCCCCeeEEEEcCCCCEEEEEEcc
Confidence 466665566779999999999888877654 57899999863
No 22
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=67.39 E-value=2.8 Score=22.43 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=8.0
Q ss_pred eEcCCeEEE
Q 033441 106 VDTDSGVHL 114 (119)
Q Consensus 106 i~s~~G~hI 114 (119)
|++++||||
T Consensus 4 v~tPYGyhi 12 (39)
T PF12075_consen 4 VETPYGYHI 12 (39)
T ss_pred ccCCcceee
Confidence 689999997
No 23
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=48.03 E-value=46 Score=18.51 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 40 SAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 40 ~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
++..+++.|.++|.+|.-+.++..+.|..
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyee 31 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEE 31 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45678899999999887788888887765
No 24
>PHA02152 hypothetical protein
Probab=41.89 E-value=12 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=24.7
Q ss_pred cCCccccccCCCCc--HHHHHHHhcCCCCCcccee
Q 033441 74 RGGDLGNFGRGQMQ--KPFEEATYNLKIGEISEVV 106 (119)
Q Consensus 74 ~gG~~g~~~~~~l~--~~~~~av~~l~~G~is~pi 106 (119)
.-|..||+++++|- ..+.+.+.+..=|+..+|+
T Consensus 20 ~ygnhgwisp~~i~~a~~ii~vv~g~~~g~~~~~~ 54 (96)
T PHA02152 20 RYGNHGWVSPSNIRYAENIINVVNGARFGEENKPV 54 (96)
T ss_pred cccccCccChhHHHHHHHHHHhhcccchhhcCCch
Confidence 34788999999875 4588888888777776554
No 25
>TIGR00258 inosine/xanthosine triphosphatase.
Probab=41.38 E-value=38 Score=23.77 Aligned_cols=41 Identities=12% Similarity=0.401 Sum_probs=34.9
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+...|++| ..+.++..++.. .+.+.++|-+|.++.+.+.
T Consensus 104 ~~v~~~i~~G-~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~v~ 145 (163)
T TIGR00258 104 KVVVEKVLEG-EEVGPVMEEYTGIDEIGRKEGAIGYLTAGKLT 145 (163)
T ss_pred HHHHHHHHcC-CcHHHHHHHHhCCCCcCCCCceEEEecCCccc
Confidence 5677788888 699999999876 7888999999999998775
No 26
>PRK03114 NTPase; Reviewed
Probab=41.23 E-value=61 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+...|++| ..+.++..++.. .+.+.++|-+|.++.+.+.
T Consensus 105 ~~v~~~i~~G-~ELG~vmd~~~g~~ni~~~~GaIG~LT~g~vt 146 (169)
T PRK03114 105 DDFLAPLEAG-KELSEVMEEYVQRKDIRSHEGAIGIFTDGYVD 146 (169)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 5677778888 699999999876 7888999999999998775
No 27
>PRK03941 NTPase; Reviewed
Probab=39.96 E-value=38 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=35.3
Q ss_pred HHHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 45 LQAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 45 a~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
=..+.+.|++| ..+.++..++.. .+.+.++|-+|.++.+.+.
T Consensus 108 P~~v~~~i~~G-~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~vt 150 (174)
T PRK03941 108 PPLVVEEVLKG-KEVGDVMSELTGIKELGRKIGAIGFLSRGMLD 150 (174)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHhCCCCcCcCCceEEEecCCcee
Confidence 35677788888 699999999876 7888999999999998775
No 28
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=38.96 E-value=61 Score=17.43 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhChhhHHHHHHHhCCc
Q 033441 44 QLQAIRDDIVSGKAKFDEVASRLSDC 69 (119)
Q Consensus 44 ~a~~l~~~l~~g~~~F~~la~~~S~~ 69 (119)
.+......++.|..++-++|+.|.-+
T Consensus 4 ~l~~Ai~~v~~g~~S~r~AA~~ygVp 29 (45)
T PF05225_consen 4 DLQKAIEAVKNGKMSIRKAAKKYGVP 29 (45)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHT--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcC
Confidence 34455566677757999999999874
No 29
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=36.18 E-value=47 Score=23.66 Aligned_cols=41 Identities=15% Similarity=0.444 Sum_probs=34.5
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+...++.| ..|.+++.+|+. .+-..+.|-.|.++.+.+.
T Consensus 110 ~~v~~~vl~G-~ElG~v~~~~~g~~~ig~~~GaIG~lT~g~lt 151 (175)
T COG1986 110 PRVLEEVLQG-KELGEVMEEYTGIDEIGRKEGAIGVLTNGKLT 151 (175)
T ss_pred HHHHHHHHcc-ccHHHHHHHHcCCCCcCcccceEEEeeCCeee
Confidence 5577788888 699999999997 6777888999999988775
No 30
>PRK05074 inosine/xanthosine triphosphatase; Reviewed
Probab=36.15 E-value=49 Score=23.44 Aligned_cols=41 Identities=20% Similarity=0.458 Sum_probs=34.5
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+...|++| ..+.++..++.. .+.+.++|-+|.++.+.+.
T Consensus 109 ~~v~~~i~~G-~ELg~vmd~~~g~~~i~~~~GaIG~LT~g~vt 150 (173)
T PRK05074 109 AVVLEALRQG-EELGDVMDRLFGTDNIKQKGGAIGLLTAGKLT 150 (173)
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 5677778888 699999998776 7888899999999998775
No 31
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=34.41 E-value=60 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCccceeEcCCeEEEEEEe
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSGVHLIMRT 118 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G~hIv~v~ 118 (119)
+.+..++.+.++|++. .+.++.|.+-++|+
T Consensus 117 SPig~aLlGk~vGd~v-~v~~p~g~~~~~I~ 146 (151)
T COG0782 117 SPLGRALLGKKVGDTV-EVNTPGGEKEVEIL 146 (151)
T ss_pred CHHHHHHhCCCCCCEE-EEecCCceEEEEEE
Confidence 5799999999999997 57777776665554
No 32
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=33.93 E-value=1.1e+02 Score=21.06 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=25.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHhCh---hhHHHHHHHhCCc----cccccCCccccccC
Q 033441 33 ISNTTRESAVSQLQAIRDDIVSGK---AKFDEVASRLSDC----SSAKRGGDLGNFGR 83 (119)
Q Consensus 33 ~~~~~~~~a~~~a~~l~~~l~~g~---~~F~~la~~~S~~----~~~~~gG~~g~~~~ 83 (119)
|.+....-|++.-..|++.+..|. +=.+.++.+|++. +.....+-+-|+.+
T Consensus 51 i~~s~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG~~Vl~~Pp~~~~~~~lW~~P 108 (148)
T PF03918_consen 51 IADSNAPIARDMRREIREMLAEGKSDEEIIDYFVERYGEFVLYEPPFKGFTWLLWLGP 108 (148)
T ss_dssp TTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT-EES--S-----------
T ss_pred hhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCcceeecCCCCccHHHHHHHH
Confidence 335556778888899999999982 2345567788862 33333344455544
No 33
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=32.59 E-value=75 Score=20.50 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc
Q 033441 38 RESAVSQLQAIRDDIVSGKAKFDEVASRLSDC 69 (119)
Q Consensus 38 ~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~ 69 (119)
.+..++.|+++...++.+ +|+++...|++.
T Consensus 4 ~Ekv~~~Aeevi~~~N~~--dy~~v~~~~d~~ 33 (101)
T PF13026_consen 4 EEKVKQKAEEVIDLLNEK--DYDKVHEKYDEK 33 (101)
T ss_pred HHHHHHHHHHHHHHHhHh--hHHHHHHHHhHH
Confidence 466678899999999986 899999998873
No 34
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=32.59 E-value=20 Score=25.95 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=10.0
Q ss_pred eeEcCCeEEEEE
Q 033441 105 VVDTDSGVHLIM 116 (119)
Q Consensus 105 pi~s~~G~hIv~ 116 (119)
|+.++.|||||=
T Consensus 165 p~~sPGGW~iIG 176 (202)
T TIGR00370 165 PISTPGGWQLIG 176 (202)
T ss_pred ccCCCCcceEee
Confidence 677999999973
No 35
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=31.13 E-value=98 Score=18.25 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 39 ESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 39 ~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
+++.++++.|.+++.+|.-+.++..+.|..
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyee 33 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456788899999999887788888777765
No 36
>PF01931 NTPase_I-T: Protein of unknown function DUF84; InterPro: IPR002786 This is a family of prokaryotic proteins of unknown function.; PDB: 1U5W_E 1ZNO_B 1ZWY_D 1U14_A.
Probab=30.61 E-value=71 Score=22.44 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=32.3
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+.+.|++| ....++..+|.. .+...++|-+|.++.+.+.
T Consensus 106 ~~v~~~i~~G-~ELg~v~d~~~g~~~i~~~~GaiG~LT~g~v~ 147 (168)
T PF01931_consen 106 PEVAEEILEG-KELGEVMDELFGRKNIGQKEGAIGILTNGRVT 147 (168)
T ss_dssp HHHHHHHTTT---HHHHHHHHHTHTTGGGTTHHHHHHTTTSS-
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCCcccCCceEEEecCCccc
Confidence 5677778887 699999998887 7888899999999998875
No 37
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=28.64 E-value=90 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCCCCccceeEcCCe
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSG 111 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G 111 (119)
+.+..++.+.++|+.. .++++.|
T Consensus 93 SPlG~ALlG~~~Gd~v-~v~~p~G 115 (137)
T PRK05753 93 APVGAALLGLSVGQSI-DWPLPGG 115 (137)
T ss_pred CHHHHHHcCCCCCCEE-EEECCCC
Confidence 5799999999999987 4778777
No 38
>PRK06770 hypothetical protein; Provisional
Probab=28.42 E-value=68 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441 42 VSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR 83 (119)
Q Consensus 42 ~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~ 83 (119)
+....+|+.++..| ||+.++..+..-= ..++|+.|-.+.
T Consensus 115 k~~yl~IL~RW~~G--DFS~~VedHN~iW-~~q~G~~GkA~~ 153 (180)
T PRK06770 115 KEELLAILERWEKG--DFSKIVEDHNYLW-KLQGGNTGKATG 153 (180)
T ss_pred HHHHHHHHHHHhcC--CcchHHHHHHHHH-HHcCCcchheee
Confidence 45677889999987 8999998776522 257788886665
No 39
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.40 E-value=1.1e+02 Score=18.49 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 37 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
+=+.+-++++.|.++|.+|.-+.++..+.|-.
T Consensus 5 ~fEeal~~LE~IV~~LE~g~l~Leesl~lyee 36 (75)
T PRK14066 5 KFETALKKLEEVVKKLEGGELSLDDSLKAFEE 36 (75)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34677889999999999987788888877765
No 40
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=28.33 E-value=25 Score=25.30 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=9.8
Q ss_pred eeEcCCeEEEEE
Q 033441 105 VVDTDSGVHLIM 116 (119)
Q Consensus 105 pi~s~~G~hIv~ 116 (119)
|..++.||+||=
T Consensus 175 p~~SPGGW~iIG 186 (201)
T smart00796 175 PLESPGGWQLIG 186 (201)
T ss_pred CCCCCCcceEee
Confidence 567999999984
No 41
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.96 E-value=1.1e+02 Score=18.65 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 35 NTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 35 ~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
..+=+.+.++++.|..+|.+|.-+.++..+.|..
T Consensus 9 ~~sfEea~~~LEeIv~~LE~~~l~Lees~~lyee 42 (80)
T PRK00977 9 PLSFEEALAELEEIVTRLESGDLPLEESLAAFER 42 (80)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3456888899999999999997788888887765
No 42
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=27.68 E-value=74 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHhChhhHHHHHHHhCC
Q 033441 45 LQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 45 a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
.+++..+|..| ++++++-++|.+
T Consensus 2 LK~ii~~Lh~G-~~~e~vk~~F~~ 24 (71)
T PF04282_consen 2 LKEIIKRLHEG-EDPEEVKEEFKK 24 (71)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHH
Confidence 46788899988 699988777754
No 43
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.80 E-value=1.3e+02 Score=18.42 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCc
Q 033441 36 TTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDC 69 (119)
Q Consensus 36 ~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~ 69 (119)
.+=+.+.+++++|.+++.+|.-+.++..+.|...
T Consensus 7 ~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG 40 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGGDLPLEESVALYKEG 40 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4557888999999999999977888888888653
No 44
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.63 E-value=1.4e+02 Score=18.19 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 37 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
+=+.+.++++.|..+|.+|.-+.++..+.|-.
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyee 38 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQR 38 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45778889999999999997788888777755
No 45
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=25.20 E-value=1.1e+02 Score=18.16 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCCCccceeEcCCeEEEEE
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSGVHLIM 116 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G~hIv~ 116 (119)
+.+..++.+.+.|+.- .+..+.|-+-++
T Consensus 44 SPLG~ALlG~~~Gd~v-~~~~~~g~~~~~ 71 (77)
T PF01272_consen 44 SPLGKALLGKKVGDEV-EVELPGGERKYE 71 (77)
T ss_dssp SHHHHHHTT-BTT-EE-EEEETTBEEEEE
T ss_pred CHHHHHhcCCCCCCEE-EEEeCCceEEEE
Confidence 5799999999999986 477777733333
No 46
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.16 E-value=1.4e+02 Score=18.08 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 37 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
+=+.+..+++.|..++.+|.-+.++..+.|..
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyee 37 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKE 37 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45777889999999999997788888887765
No 47
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.32 E-value=1.4e+02 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 36 TTRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 36 ~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
.+=+.+.++++.|.++|.+|.-+.++..+.|-.
T Consensus 8 ~sFEeal~~LEeIV~~LEsgdl~LEesl~lyee 40 (95)
T PRK14069 8 ISFEDALRELEQIAEKLERQDFSLEESLKAYER 40 (95)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456788899999999999987778887777754
No 48
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=24.10 E-value=18 Score=26.03 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.0
Q ss_pred eeEcCCeEEEEEE
Q 033441 105 VVDTDSGVHLIMR 117 (119)
Q Consensus 105 pi~s~~G~hIv~v 117 (119)
|..++.|||||=.
T Consensus 174 P~~sPGGW~iIGr 186 (202)
T PF02682_consen 174 PQESPGGWQIIGR 186 (202)
T ss_dssp SSSEEE-SEEEEE
T ss_pred ecCCCCcceEEee
Confidence 5668899999843
No 49
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=23.69 E-value=1e+02 Score=17.08 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=16.6
Q ss_pred HHHHHHHHhChhhHHHHHHHhCCcc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSDCS 70 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~~~ 70 (119)
-+|...+..| .+..++|++|.-..
T Consensus 13 ~~iI~~~e~g-~s~~~ia~~fgv~~ 36 (53)
T PF04218_consen 13 LEIIKRLEEG-ESKRDIAREFGVSR 36 (53)
T ss_dssp HHHHHHHHCT-T-HHHHHHHHT--C
T ss_pred HHHHHHHHcC-CCHHHHHHHhCCCH
Confidence 3466678888 59999999998743
No 50
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=23.46 E-value=56 Score=25.44 Aligned_cols=27 Identities=22% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHhcCCCCCccceeEcCCeEEEEE
Q 033441 90 FEEATYNLKIGEISEVVDTDSGVHLIM 116 (119)
Q Consensus 90 ~~~av~~l~~G~is~pi~s~~G~hIv~ 116 (119)
...+=++++.|--++||++..||.|++
T Consensus 196 ~~~~~d~~KIG~g~~Pikt~egwLvly 222 (314)
T COG2152 196 MGGWWDELKIGWGTPPIKTEEGWLVLY 222 (314)
T ss_pred cCCcchhhhccCCCCCcCcccceEEEE
Confidence 334557788888888999999999875
No 51
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=22.44 E-value=1.2e+02 Score=21.24 Aligned_cols=35 Identities=11% Similarity=0.310 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccc
Q 033441 37 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSS 71 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~ 71 (119)
..+.-+...++|.+.+++|..+...+++.+.-.+.
T Consensus 102 ~deel~~~~e~i~~~v~~Gn~Sl~~lsr~l~~sp~ 136 (160)
T PF09824_consen 102 SDEELRDYVEKIEKEVEAGNTSLSDLSRKLGISPV 136 (160)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCHH
Confidence 34666788889999999998888999887766544
No 52
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=1.2e+02 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=29.0
Q ss_pred hhHHHHHHHhCCccccccCCccccccCCCCcH---------HHHHHHhcCCCCCcc
Q 033441 57 AKFDEVASRLSDCSSAKRGGDLGNFGRGQMQK---------PFEEATYNLKIGEIS 103 (119)
Q Consensus 57 ~~F~~la~~~S~~~~~~~gG~~g~~~~~~l~~---------~~~~av~~l~~G~is 103 (119)
.||.+++..+..++. .+|+.-+.+++ .+.....-|+.|.+.
T Consensus 56 sDF~~la~~~G~Ppk------i~wLr~gNvs~~~ie~l~~~~l~~~~e~le~g~~v 105 (113)
T COG4634 56 SDFADLALTLGSPPK------IVWLRCGNVSTREIEILIRSVLRAIGEELESGALV 105 (113)
T ss_pred ccHHHHHHHcCCCCe------EEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 699999999998765 67888887764 344444555666654
No 53
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=21.61 E-value=93 Score=18.69 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHhcCCCCCccce
Q 033441 83 RGQMQKPFEEATYNLKIGEISEV 105 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~p 105 (119)
.+.+.+.|..++..|+.|+....
T Consensus 41 ~~~~i~g~e~al~~m~~Ge~~~~ 63 (94)
T PF00254_consen 41 SGQVIPGLEEALIGMKVGEKREF 63 (94)
T ss_dssp SSSSSHHHHHHHTTSBTTEEEEE
T ss_pred cCccccchhhhcccccCCCEeee
Confidence 34688999999999999997653
No 54
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.61 E-value=1.8e+02 Score=17.55 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 37 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
+=+.+-.+.+.|.++|.+|.-+.++..+.|-.
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~ 38 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQK 38 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45778889999999999987778887777754
No 55
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=21.20 E-value=1.8e+02 Score=22.65 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 45 LQAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 45 a~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
=..+...|.+| ....++..++.. .+.+.++|-+|.++.+.+.
T Consensus 256 P~~v~~~i~~G-~ELg~vmd~~~g~~ni~~~~GaIG~LT~g~v~ 298 (322)
T PRK01170 256 PDKIIDMIKRG-MEVSDAYEKYSGIKDIDKKMGIIGKISKGKIR 298 (322)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHhCCCCcCCCCceEEEecCCcee
Confidence 35677788888 689999998876 7889999999999998875
No 56
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.48 E-value=1.5e+02 Score=16.51 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=16.8
Q ss_pred HHHHHHHHHhChhhHHHHHHHhCC
Q 033441 45 LQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 45 a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
...|...+.+| .+.++++..|-.
T Consensus 21 v~~i~~~~~~G-~s~eeI~~~yp~ 43 (56)
T PF04255_consen 21 VRDILDLLAAG-ESPEEIAEDYPS 43 (56)
T ss_dssp HHHHHHHHHTT---HHHHHHHSTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHCCC
Confidence 46677788777 799999998865
No 57
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.45 E-value=1.8e+02 Score=20.04 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCCCccceeEcCCe---EEEEEE
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSG---VHLIMR 117 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G---~hIv~v 117 (119)
+++..++.+.++|+... +.++.| |.|+.|
T Consensus 123 SPlG~ALlGk~vGD~v~-v~~p~g~~~~eI~~I 154 (158)
T PRK05892 123 SPLGQALAGHQAGDTVT-YSTPQGPAQVELLAV 154 (158)
T ss_pred CHHHHHHhCCCCCCEEE-EEcCCCcEEEEEEEE
Confidence 57999999999999874 677776 566654
No 58
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.14 E-value=1.6e+02 Score=15.63 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=20.0
Q ss_pred CcHHHHHHHhcCCCCCccceeEcCCeEEEE
Q 033441 86 MQKPFEEATYNLKIGEISEVVDTDSGVHLI 115 (119)
Q Consensus 86 l~~~~~~av~~l~~G~is~pi~s~~G~hIv 115 (119)
||.+|...+ ++++|+.-.....++|-.++
T Consensus 11 iPk~~~~~l-~l~~Gd~v~i~~~~~g~i~i 39 (47)
T PF04014_consen 11 IPKEIREKL-GLKPGDEVEIEVEGDGKIVI 39 (47)
T ss_dssp E-HHHHHHT-TSSTTTEEEEEEETTSEEEE
T ss_pred CCHHHHHHc-CCCCCCEEEEEEeCCCEEEE
Confidence 677787666 89999877776777764443
Done!