Query 033441
Match_columns 119
No_of_seqs 102 out of 1019
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 23:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lj4_A Peptidyl-prolyl CIS-tra 100.0 7.7E-34 2.6E-38 187.8 12.9 114 4-119 2-115 (115)
2 3i6c_A Peptidyl-prolyl CIS-tra 100.0 7.7E-33 2.6E-37 184.9 13.2 115 1-119 9-123 (123)
3 1j6y_A Peptidyl-prolyl CIS-tra 100.0 2.4E-32 8.3E-37 185.9 8.7 119 1-119 21-139 (139)
4 3gpk_A PPIC-type peptidyl-prol 100.0 2.3E-31 7.9E-36 175.2 11.0 99 3-119 4-102 (112)
5 3tc5_A Peptidyl-prolyl CIS-tra 100.0 6.3E-31 2.2E-35 183.6 13.2 114 2-119 53-166 (166)
6 4g2p_A Chaperone SURA; structu 100.0 3.3E-31 1.1E-35 173.8 10.9 101 3-119 5-106 (110)
7 2pv1_A Chaperone SURA; surviVa 100.0 1.2E-30 4E-35 168.9 10.2 101 5-119 1-101 (103)
8 2jzv_A Foldase protein PRSA; p 100.0 5.1E-30 1.7E-34 168.0 12.3 107 3-119 4-111 (111)
9 1yw5_A Peptidyl prolyl CIS/tra 100.0 3.7E-29 1.3E-33 176.1 13.7 115 2-119 63-177 (177)
10 2rqs_A Parvulin-like peptidyl- 100.0 4.9E-29 1.7E-33 159.9 10.9 93 1-119 4-97 (97)
11 1jns_A Peptidyl-prolyl CIS-tra 100.0 6.2E-29 2.1E-33 158.0 9.9 89 5-119 2-90 (92)
12 1zk6_A Foldase protein PRSA; a 100.0 9.3E-29 3.2E-33 157.3 9.6 90 4-119 2-92 (93)
13 3ui4_A Peptidyl-prolyl CIS-tra 100.0 7.3E-28 2.5E-32 155.7 10.2 89 4-119 5-99 (101)
14 2kgj_A Peptidyl-prolyl CIS-tra 99.9 1.8E-27 6.1E-32 154.1 7.9 90 5-119 2-92 (102)
15 3rfw_A Cell-binding factor 2; 99.9 3.2E-23 1.1E-27 151.7 8.8 94 1-119 107-207 (252)
16 1m5y_A SurviVal protein, survi 99.9 8.1E-23 2.8E-27 157.8 9.6 105 1-119 148-252 (408)
17 3nrk_A LIC12922; NC domain, pa 99.9 4.2E-23 1.4E-27 156.5 7.2 100 4-119 157-263 (325)
18 1m5y_A SurviVal protein, survi 99.8 5.2E-21 1.8E-25 147.6 10.8 100 3-119 261-362 (408)
19 3rgc_A Possible periplasmic pr 99.6 8.7E-17 3E-21 117.5 4.7 76 1-119 130-205 (252)
20 4hyz_A Uncharacterized protein 50.3 19 0.00066 22.4 3.7 31 36-68 11-41 (114)
21 3twe_A Alpha4H; unknown functi 40.7 28 0.00095 15.9 2.5 19 37-55 9-27 (27)
22 2yqr_A KIAA0907 protein; struc 35.7 82 0.0028 19.8 5.0 30 35-67 83-112 (119)
23 3bmb_A Regulator of nucleoside 30.5 50 0.0017 21.1 3.3 29 88-117 92-124 (136)
24 1u14_A Hypothetical UPF0244 pr 30.1 40 0.0014 22.8 2.9 41 46-87 109-150 (172)
25 1vp7_A Exodeoxyribonuclease VI 27.8 71 0.0024 19.7 3.5 34 35-68 29-62 (100)
26 3f7s_A Uncharacterized NTF2-li 27.5 45 0.0015 20.5 2.7 34 36-71 5-38 (142)
27 1zwy_A Hypothetical UPF0244 pr 25.7 45 0.0015 22.8 2.5 41 46-87 119-160 (185)
28 2rod_B NOXA, noxaa; MCL-1, apo 25.0 37 0.0013 15.5 1.3 13 85-97 2-14 (27)
29 2pn0_A Prokaryotic transcripti 24.7 53 0.0018 21.2 2.6 29 88-117 95-127 (141)
30 3jtz_A Integrase; four strande 24.3 56 0.0019 19.3 2.5 21 35-55 58-78 (88)
31 3h3h_A Uncharacterized snoal-l 23.9 65 0.0022 19.2 2.9 34 36-71 5-38 (122)
32 2ux0_A Calcium-calmodulin depe 23.2 76 0.0026 19.4 3.2 32 38-71 12-43 (143)
33 2kw0_A CCMH protein; oxidoredu 22.4 1.4E+02 0.0047 18.0 4.4 33 35-68 36-72 (90)
34 2zp2_A Kinase A inhibitor; KIP 22.0 23 0.00079 23.3 0.4 15 57-71 26-40 (141)
35 2f23_A Anti-cleavage anti-GREA 21.3 1E+02 0.0036 20.0 3.6 28 88-116 123-150 (156)
No 1
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=100.00 E-value=7.7e-34 Score=187.78 Aligned_cols=114 Identities=46% Similarity=0.746 Sum_probs=102.1
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR 83 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~ 83 (119)
|++++++||||++++...+..+...+... ..+.++|++++++|+++|++|+.+|++||++||+++++.+||+|||+.+
T Consensus 2 pe~vrasHILi~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~ 79 (115)
T 2lj4_A 2 SEKLRAAHLLVKFSGSRNPVSRRTGDSTA--DVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSS 79 (115)
T ss_dssp CCEEEEEEEEECCTTSSCCCCTTTSSCCT--TSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEET
T ss_pred CCcEEEEEEEEecCCccChhhhhhccccc--cccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecC
Confidence 79999999999988776665555433332 5678899999999999999996699999999999999999999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
++|+|+|.+++|+|++|++|+||+|++|||||+|+.
T Consensus 80 ~~~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~A 115 (115)
T 2lj4_A 80 GEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRLA 115 (115)
T ss_dssp TSSCHHHHHHHTTSCBTCBCCCEECSSSEEEEEECC
T ss_pred CCCCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEeC
Confidence 999999999999999999999999999999999974
No 2
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=100.00 E-value=7.7e-33 Score=184.92 Aligned_cols=115 Identities=50% Similarity=0.818 Sum_probs=98.3
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..|++|+++||||++++...+..+.. +.. ..++++|++++++|+++|++|+++|++||++||+++++.+||+|||
T Consensus 9 ~~~~~~v~~~HILi~~~~~~~p~~~~~-~~~---~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~ 84 (123)
T 3i6c_A 9 QGEPARVRCSHLLVKHSQSRRPSSWRQ-EQI---TRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGA 84 (123)
T ss_dssp --CCSEEEEEEEEECCTTSSSCCBTTB-SSC---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEE
T ss_pred cCCCcEEEEEEEEEecCCccCccccch-hhh---hhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCchhhhCCceee
Confidence 568999999999999865433322211 111 4578999999999999999985699999999999999999999999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+.+++|+|+|.+++|+|++|++|+||++++|||||+|++
T Consensus 85 ~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~E 123 (123)
T 3i6c_A 85 FSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 123 (123)
T ss_dssp EETTTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC
T ss_pred EcCCCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEeC
Confidence 999999999999999999999999999999999999986
No 3
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=99.97 E-value=2.4e-32 Score=185.89 Aligned_cols=119 Identities=78% Similarity=1.216 Sum_probs=107.4
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..|++|+++||||+.+...++.+|+.+++..++..+.++|+++|++|+++|++|..+|++||++||+++++.+||+|||
T Consensus 21 f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~ 100 (139)
T 1j6y_A 21 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS 100 (139)
T ss_dssp CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred cCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCchhhcCCeeee
Confidence 67899999999999988766666676676666667888999999999999999984369999999999888999999999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+..++|+|+|.+++|+|++|+||+||++++|||||+|++
T Consensus 101 ~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~~ 139 (139)
T 1j6y_A 101 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139 (139)
T ss_dssp CSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSCC
T ss_pred ecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEeC
Confidence 999999999999999999999999999999999999874
No 4
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=99.97 E-value=2.3e-31 Score=175.15 Aligned_cols=99 Identities=18% Similarity=0.351 Sum_probs=91.9
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG 82 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~ 82 (119)
.+++|+++||||+.. +.+.++|+++|++|+++|++| ++|++||++||+++++.+||++||+.
T Consensus 4 ~~~~~~v~hIli~~~-----------------~~~~~~a~~~A~~i~~~l~~G-~~F~~lA~~~S~d~sa~~GGdlG~~~ 65 (112)
T 3gpk_A 4 GTEEYRIGEIFLAAT-----------------EENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEASTAAVGGDLGWIR 65 (112)
T ss_dssp -CCEEEEEEEEEECC-----------------GGGHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEEEC
T ss_pred CCcEEEEEEEEEeCC-----------------hhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhcCcccceEc
Confidence 468999999999942 456788999999999999998 79999999999988999999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+++|+|+|.+++|+|++|++|+||++++|||||+|.+
T Consensus 66 ~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~~ 102 (112)
T 3gpk_A 66 LAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLID 102 (112)
T ss_dssp GGGSCHHHHHHHHHCCTTCEEEEEEETTEEEEEEEEE
T ss_pred ccccCHHHHHHHHhCCCCCccceEEECCEEEEEEEEe
Confidence 9999999999999999999999999999999999974
No 5
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=99.97 E-value=6.3e-31 Score=183.59 Aligned_cols=114 Identities=49% Similarity=0.826 Sum_probs=99.7
Q ss_pred CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441 2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF 81 (119)
Q Consensus 2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~ 81 (119)
..+++|+++||||++.....+++|+..+ . ..++++|++++++|+++|++|+++|++||++||+++++.+||||||+
T Consensus 53 ~~~~~v~~~HILi~~~~~~~p~~~~~~~-~---~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~ 128 (166)
T 3tc5_A 53 GEPARVRCSHLLVKHSQSRRPSSWRQEK-I---TRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF 128 (166)
T ss_dssp -CCSCEEEEEEEECCTTSSSCCBTTBSS-C---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE
T ss_pred ccccceeEeeeEEecccccCccccchhh-h---hhHHHHHHHHHHHHHHHHHcCccCHHHHHHHhCcccHHhcCCcccee
Confidence 4578999999999987655444443221 1 46789999999999999999856999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.+++|+++|.+++|+|++|++|+||++++|||||+|++
T Consensus 129 ~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~e 166 (166)
T 3tc5_A 129 SRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 166 (166)
T ss_dssp CTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC
T ss_pred cccccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEeC
Confidence 99999999999999999999999999999999999986
No 6
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=99.97 E-value=3.3e-31 Score=173.77 Aligned_cols=101 Identities=36% Similarity=0.443 Sum_probs=91.6
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF 81 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~ 81 (119)
..++|+++||||+.+. ..+.++|+++|++|+++|++|..+|++||++||+++ ++.+||++||+
T Consensus 5 ~~~~v~~~hIli~~~~----------------~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~ 68 (110)
T 4g2p_A 5 SVTEVHARHILLKPSP----------------IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWA 68 (110)
T ss_dssp CCEEEEEEEEEECCCS----------------SSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEE
T ss_pred cccEEEEEEEEEECCC----------------CCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCee
Confidence 4579999999999754 234578999999999999998339999999999975 89999999999
Q ss_pred cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
..++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus 69 ~~~~l~~~f~~a~~~l~~Geis~pv~t~~G~hIikv~~ 106 (110)
T 4g2p_A 69 TPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLD 106 (110)
T ss_dssp CGGGSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEEEE
T ss_pred cccccCHHHHHHHHcCCCCCcCccEEECCEEEEEEEEE
Confidence 99999999999999999999999999999999999974
No 7
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=99.97 E-value=1.2e-30 Score=168.94 Aligned_cols=101 Identities=27% Similarity=0.327 Sum_probs=91.7
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG 84 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~ 84 (119)
++|+++||+|+.+...+ ..+.++++++|++++++|++| ++|++||++||+++++.+||++||+..+
T Consensus 1 ~~~~~~hIli~~~~~~~-------------~~~~~~a~~~a~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gG~lg~~~~~ 66 (103)
T 2pv1_A 1 TELNLSHILIPLPENPT-------------SDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQ 66 (103)
T ss_dssp CCEEEEEEEEECCSSCC-------------HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEEECGG
T ss_pred CcEEEEEEEEECCCCCC-------------HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcccccCCccceEchh
Confidence 46999999999864321 456678899999999999998 7999999999998889999999999999
Q ss_pred CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+|+++|.+++++|++|+||+||++++|||||+|++
T Consensus 67 ~l~~~f~~a~~~l~~G~is~pv~t~~G~hii~v~~ 101 (103)
T 2pv1_A 67 ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 101 (103)
T ss_dssp GSCHHHHHHTTTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred hcCHHHHHHHHcCCCCCeeccEEECCEEEEEEEEE
Confidence 99999999999999999999999999999999974
No 8
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=99.97 E-value=5.1e-30 Score=168.01 Aligned_cols=107 Identities=35% Similarity=0.520 Sum_probs=94.1
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNF 81 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~ 81 (119)
.+++++++||+|+++...++. . ..+.++++++|++|+++|++|+++|++||++||+++ ++.+||++||+
T Consensus 4 ~~~~~~~~hIli~~~~~~~~~------~----~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~ 73 (111)
T 2jzv_A 4 GSDSKKASHILIKVKSKKSDK------E----GLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYV 73 (111)
T ss_dssp CCSEEEEEEEEEEBCSCSSCS------S----SBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEE
T ss_pred CCcEEEEEEEEEECCCCCChh------h----hhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCcccee
Confidence 578999999999987543211 0 123677899999999999998569999999999987 89999999999
Q ss_pred cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.+++|+++|.+++|+|++|+||+||++++|||||+|++
T Consensus 74 ~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~ 111 (111)
T 2jzv_A 74 LKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK 111 (111)
T ss_dssp ETTSSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEECC
T ss_pred cCCcccHHHHHHHHhCCCCCcCccEEECCEEEEEEEeC
Confidence 99999999999999999999999999999999999975
No 9
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=99.96 E-value=3.7e-29 Score=176.07 Aligned_cols=115 Identities=50% Similarity=0.894 Sum_probs=98.3
Q ss_pred CCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccc
Q 033441 2 SSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNF 81 (119)
Q Consensus 2 ~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~ 81 (119)
..+++++++||||+.+....+.+|..+.+. ..++++|+++++.|+++|++|..+|++||++||+++++.+||+|||+
T Consensus 63 ~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~---~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~ 139 (177)
T 1yw5_A 63 NEDGQVRVSHLLIKNNQSRKPKSWKSPDGI---SRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFF 139 (177)
T ss_dssp CTTSCEEEEEEEECCTTSSSCCBTTBTTCC---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEE
T ss_pred CCcceEEEEEEEEecCCccCcccccccccc---hhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcchhcCCcccee
Confidence 578899999999998765444333322111 34578899999999999999833799999999999899999999999
Q ss_pred cCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 82 GRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 82 ~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.+++|+++|.+++|+|++|+||+||++++|||||+|++
T Consensus 140 ~~~~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~~ 177 (177)
T 1yw5_A 140 SKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177 (177)
T ss_dssp CTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEECC
T ss_pred cccccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEeC
Confidence 99999999999999999999999999999999999975
No 10
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=99.96 E-value=4.9e-29 Score=159.91 Aligned_cols=93 Identities=46% Similarity=0.796 Sum_probs=86.4
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhC-CccccccCCccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS-DCSSAKRGGDLG 79 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S-~~~~~~~gG~~g 79 (119)
|..|++++++||+|+. +++|++++++|++| ++|+++|++|| +++++.+||++|
T Consensus 4 ~~~~~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~d~~s~~~GG~lG 57 (97)
T 2rqs_A 4 GSMADKIKCSHILVKK-------------------------QGEALAVQERLKAG-EKFGKLAKELSIDGGSAKRDGSLG 57 (97)
T ss_dssp CCCCCSEEEEEEEESC-------------------------HHHHHHHHHHHTTT-CCHHHHHHHTCCCCGGGGGTTEEE
T ss_pred ccccceEEEEEEEeCC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCCcchhcCceee
Confidence 4678999999999984 36789999999998 69999999999 578999999999
Q ss_pred cccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 80 NFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 80 ~~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
|+..++|+++|.+++++|++|+||+||++++|||||+|.+
T Consensus 58 ~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~d 97 (97)
T 2rqs_A 58 YFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97 (97)
T ss_dssp EECTTSSCHHHHHHHTTCTTSCBCCCEECSSCEEEEEECC
T ss_pred eEcCCCCCHHHHHHHHcCCCCCccccEEECCEEEEEEEeC
Confidence 9999999999999999999999999999999999999975
No 11
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=99.96 E-value=6.2e-29 Score=158.01 Aligned_cols=89 Identities=34% Similarity=0.527 Sum_probs=83.4
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccCC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRG 84 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~~ 84 (119)
++++++||+|+. +++|++++++|++| ++|+++|++||+++++.+||++||+..+
T Consensus 2 ~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gGdlg~~~~~ 55 (92)
T 1jns_A 2 KTAAALHILVKE-------------------------EKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQG 55 (92)
T ss_dssp CEEEEEEEEESS-------------------------HHHHHHHHHHHHHT-CCHHHHHHHHHCSTTTTTGGGCCEEETT
T ss_pred CEEEEEEEEeCC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCcchhcCCeeeEEcCc
Confidence 689999999985 25789999999998 6999999999998899999999999999
Q ss_pred CCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 85 QMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 85 ~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus 56 ~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~ 90 (92)
T 1jns_A 56 QMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 90 (92)
T ss_dssp SSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEEC
T ss_pred ccCHHHHHHHHhCCCCCcCCcEEECCEEEEEEEEe
Confidence 99999999999999999999999999999999985
No 12
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=99.96 E-value=9.3e-29 Score=157.30 Aligned_cols=90 Identities=40% Similarity=0.697 Sum_probs=83.6
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccccc-
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFG- 82 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~- 82 (119)
+++++++||+|+. +++|++++++|++| ++|+++|++||+++++.+||++||+.
T Consensus 2 ~~~~~~~hIl~~~-------------------------~~~A~~i~~~l~~g-~~F~~lA~~~S~~~s~~~gG~lg~~~~ 55 (93)
T 1zk6_A 2 SGKIRASHILVAD-------------------------KKTAEEVEKKLKKG-EKFEDLAKEYSTDSSASKGGDLGWFAK 55 (93)
T ss_dssp -CCEEEEEEEESS-------------------------HHHHHHHHHHHHHT-CCHHHHHHHHCCSGGGGGTTEEEEECT
T ss_pred CCEEEEEEEEecc-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhhCCeeeeecc
Confidence 5789999999983 36789999999998 69999999999988999999999999
Q ss_pred CCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 83 RGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 83 ~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
.++|+|+|.+++++|++|+||+||++++|||||+|.+
T Consensus 56 ~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 56 EGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKKTE 92 (93)
T ss_dssp TTSSCTTHHHHHHHSCTTCBCCCEECSSCEEEEEEEE
T ss_pred cccCCHHHHHHHHcCCCCCccceEEECCEEEEEEEec
Confidence 9999999999999999999999999999999999974
No 13
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=99.95 E-value=7.3e-28 Score=155.71 Aligned_cols=89 Identities=37% Similarity=0.657 Sum_probs=82.3
Q ss_pred CceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCccccccC
Q 033441 4 ANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGR 83 (119)
Q Consensus 4 ~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~~~~ 83 (119)
+++|+++||+|+. +++|++++++|++| ++|++||++||+++ +.+||++||+.+
T Consensus 5 ~~~v~~~~Ilv~~-------------------------~~~A~~i~~~l~~G-~~F~~lA~~~S~d~-a~~GGdlG~~~~ 57 (101)
T 3ui4_A 5 SNAVKVRHILCEK-------------------------HGKIMEAMEKLKSG-MRFNEVAAQYSEDK-ARQGGDLGWMTR 57 (101)
T ss_dssp GCEEEEEEEEESS-------------------------HHHHHHHHHHHHTT-CCHHHHHHHHCSSS-GGGTTEEEEEET
T ss_pred CcEEEEEEEEECC-------------------------HHHHHHHHHHHHCC-CCHHHHHHHhCcCc-hhcCCceeeEcC
Confidence 5799999999984 36789999999998 79999999999974 789999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccc------eeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISE------VVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~------pi~s~~G~hIv~v~~ 119 (119)
++|+++|.+++|+|++|++|. ||++++|||||+|++
T Consensus 58 ~~l~~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIikv~~ 99 (101)
T 3ui4_A 58 GSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEG 99 (101)
T ss_dssp TSSCHHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCCCccCcccCCcEEECCEEEEEEEEe
Confidence 999999999999999999997 999999999999974
No 14
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.94 E-value=1.8e-27 Score=154.10 Aligned_cols=90 Identities=21% Similarity=0.385 Sum_probs=82.2
Q ss_pred ceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCcc-ccccCCccccccC
Q 033441 5 NQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCS-SAKRGGDLGNFGR 83 (119)
Q Consensus 5 ~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~-~~~~gG~~g~~~~ 83 (119)
++++++|||+... ++++|++|+++|++| ++|++||++||+++ ++.+||++||+.+
T Consensus 2 ~~~~~~hIl~~~~-----------------------~~~~A~~i~~~l~~G-~~F~~lA~~~S~d~~sa~~GGdlG~~~~ 57 (102)
T 2kgj_A 2 QPQRTRYSIIQTK-----------------------TEDEAKAVLDELNKG-GDFAALAKEKSADIISARNGGDMGWLED 57 (102)
T ss_dssp CCCEEEEEEEEES-----------------------SHHHHHHHHHHHHHT-SCHHHHHHHTCTTHHHHTTTSEEEEEET
T ss_pred CEEEEEeeecChh-----------------------hHHHHHHHHHHHHCC-CCHHHHHHHhCCCchhhhcCCccceecc
Confidence 6799999998641 146789999999998 69999999999986 8999999999999
Q ss_pred CCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 84 GQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 84 ~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
++|+|+|.+++|+ ++|+||+||++++|||||+|.+
T Consensus 58 ~~l~~~f~~a~~~-~~GeiS~pv~t~~G~hIikv~~ 92 (102)
T 2kgj_A 58 ATIPDELKNAGLK-EKGQLSGVIKSSVGFLIVRLDD 92 (102)
T ss_dssp TCCCHHHHTTCCC-STTCEEEEEEETTEEEEEEEEE
T ss_pred cccCHHHHHHHhc-CCCCccccEEECCEEEEEEEee
Confidence 9999999999999 9999999999999999999974
No 15
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=99.89 E-value=3.2e-23 Score=151.75 Aligned_cols=94 Identities=35% Similarity=0.600 Sum_probs=81.9
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHh--Ch---hhHHHHHHHhCCccc-ccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVS--GK---AKFDEVASRLSDCSS-AKR 74 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~--g~---~~F~~la~~~S~~~~-~~~ 74 (119)
|..|++++++||+|+.+ +.|+.++++|+. |+ ++|+++|++||.+++ +.+
T Consensus 107 f~~~~~~~~~~I~~~~~-------------------------~~A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~ 161 (252)
T 3rfw_A 107 YVKPARVQAKHILVATE-------------------------KEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQ 161 (252)
T ss_dssp SEECCEEEEEEEEESSH-------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGG
T ss_pred ccccceEEEEEEEeCCH-------------------------HHHHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhc
Confidence 55689999999999852 456788888884 43 499999999999654 456
Q ss_pred CCccccccCCCCcHHHHHHHhcCCCCCcc-ceeEcCCeEEEEEEeC
Q 033441 75 GGDLGNFGRGQMQKPFEEATYNLKIGEIS-EVVDTDSGVHLIMRTG 119 (119)
Q Consensus 75 gG~~g~~~~~~l~~~~~~av~~l~~G~is-~pi~s~~G~hIv~v~~ 119 (119)
||++||+..++|+|+|.+++++|++|++| .||++++|||||+|++
T Consensus 162 gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~ 207 (252)
T 3rfw_A 162 GGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKEN 207 (252)
T ss_dssp TTEEEEECSSSSCHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEE
T ss_pred CCcccccccccccHHHHHHHHcCCCCCccCceEEECCEEEEEEEEE
Confidence 99999999999999999999999999999 5999999999999974
No 16
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.88 E-value=8.1e-23 Score=157.76 Aligned_cols=105 Identities=26% Similarity=0.322 Sum_probs=92.1
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..+++++++||+|+.+... +..+..+++++|++++.+|++| .+|+++|+.||+++++.+||++||
T Consensus 148 ~~~~~~~~~~~i~i~~~~~~-------------s~~~~~~~~~~a~~~~~~l~~g-~~F~~lA~~~S~~~~~~~gG~lg~ 213 (408)
T 1m5y_A 148 NDASTELNLSHILIPLPENP-------------TSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGW 213 (408)
T ss_dssp ----CCEEEEEEEEECCSSC-------------CHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCSTTGGGTTEEEE
T ss_pred cCCcccEEEEEEEEeCCCCC-------------CHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHcCCCcccccCCcccc
Confidence 45678999999999976421 1456677889999999999998 799999999999889999999999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+..++|+|+|.++++.|++|++|+||++++||||++|++
T Consensus 214 ~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~ 252 (408)
T 1m5y_A 214 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 252 (408)
T ss_dssp ECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred cchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEE
Confidence 999999999999999999999999999999999999974
No 17
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=99.88 E-value=4.2e-23 Score=156.47 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=87.5
Q ss_pred CceeEEeeEEE-eccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHH-HHhChhhHHHHHHHhCCcc-ccccCCcccc
Q 033441 4 ANQVRASHILI-KHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDD-IVSGKAKFDEVASRLSDCS-SAKRGGDLGN 80 (119)
Q Consensus 4 ~~~~~~~~I~i-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~-l~~g~~~F~~la~~~S~~~-~~~~gG~~g~ 80 (119)
++.++++||+| +.+.. ......++++|++++.+ +++| ++|++||++||+++ ++.+||++||
T Consensus 157 ~~~~~~~~Ili~~~~~~---------------~~~~~~~~~~a~~i~~~~l~~g-~~F~~lA~~~S~d~~s~~~gG~lg~ 220 (325)
T 3nrk_A 157 GFEIRYRIISIAPENDS---------------IQEENRLYKEVSEIRKSILADP-SSFALIAGSPRNDPALRARRGMVEW 220 (325)
T ss_dssp CEEEEEEEEEECCSSSC---------------HHHHHHHHHHHHHHHHHHHHCT-THHHHHHHSTTSCHHHHHTTTEEEE
T ss_pred CcceEEEEEEEecCCCC---------------ccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHhCCCccccccCCcccc
Confidence 46789999999 65431 22336888999999999 8888 69999999999975 4589999999
Q ss_pred ccCCCCc---HHHHHHHhcCCCCCccceeEcCC-eEEEEEEeC
Q 033441 81 FGRGQMQ---KPFEEATYNLKIGEISEVVDTDS-GVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~---~~~~~av~~l~~G~is~pi~s~~-G~hIv~v~~ 119 (119)
+..++|+ |+|.+++++|++|+||+||++++ |||||+|++
T Consensus 221 ~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hIikv~~ 263 (325)
T 3nrk_A 221 ISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEG 263 (325)
T ss_dssp EEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEEEEEEE
T ss_pred cccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEEEEEec
Confidence 9999999 99999999999999999999999 999999974
No 18
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.85 E-value=5.2e-21 Score=147.63 Aligned_cols=100 Identities=36% Similarity=0.450 Sum_probs=89.8
Q ss_pred CCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChh-hHHHHHHHhCCc-cccccCCcccc
Q 033441 3 SANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKA-KFDEVASRLSDC-SSAKRGGDLGN 80 (119)
Q Consensus 3 ~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~-~F~~la~~~S~~-~~~~~gG~~g~ 80 (119)
..++++++||+|+... ....+.|++++.+++.+|++| . +|+++|++||.+ .++.+||++||
T Consensus 261 ~~~~~~~~~Il~~~~~----------------~~~~~~a~~~a~~~~~~l~~g-~~~f~~~A~~~s~~~~s~~~gg~lg~ 323 (408)
T 1m5y_A 261 SVTEVHARHILLKPSP----------------IMTDEQARVKLEQIAADIKSG-KTTFAAAAKEFSQDPGSANQGGDLGW 323 (408)
T ss_dssp CCEEEEEEEEEECCCS----------------SSCHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHCCCTTTGGGTTEEEE
T ss_pred cccchhhheeeecCCC----------------CcCHHHHHHHHHHHHHHHHcC-cccHHHHHHHhCCCcchhhcCCcCcc
Confidence 3468999999999643 234578889999999999998 6 999999999996 58899999999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+.+++|+|+|.+++|+|++|++|+||++++|||||+|++
T Consensus 324 ~~~~~~~~~~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~ 362 (408)
T 1m5y_A 324 ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLD 362 (408)
T ss_dssp ECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEE
T ss_pred cCcccchHHHHHHHHcCCCCCccCcEeeCCeEEEEEEee
Confidence 999999999999999999999999999999999999974
No 19
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=99.64 E-value=8.7e-17 Score=117.49 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCCCceeEEeeEEEeccCCCCcCCCCCCCCccCCcccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccccccCCcccc
Q 033441 1 MSSANQVRASHILIKHQGSRRKASWKDPEGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGN 80 (119)
Q Consensus 1 ~~~~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~~~~gG~~g~ 80 (119)
|..|++++++||++.. .+++++|++| ++|+ .||++||
T Consensus 130 f~~~~~v~~~~i~~~~-----------------------------~~~~~~l~~g-~~f~-------------l~g~lg~ 166 (252)
T 3rgc_A 130 FTFYTQINANIYLSNN-----------------------------PQTLENIKNT-KKTI-------------LKPQNAS 166 (252)
T ss_dssp CCEESEEEEEEEECSC-----------------------------HHHHHHHHHH-CCCC-------------SCCEEEE
T ss_pred cCCCceEEEEEecCCC-----------------------------HHHHHHHHhC-CCcc-------------cccccce
Confidence 5678899999999642 1234567777 5776 3689999
Q ss_pred ccCCCCcHHHHHHHhcCCCCCccceeEcCCeEEEEEEeC
Q 033441 81 FGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 119 (119)
Q Consensus 81 ~~~~~l~~~~~~av~~l~~G~is~pi~s~~G~hIv~v~~ 119 (119)
+..++|+|+|.+++++|++|++|+||++++|||||+|++
T Consensus 167 ~~~~~l~~~~~~a~~~l~~G~is~pv~t~~G~hiikv~~ 205 (252)
T 3rgc_A 167 LNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKS 205 (252)
T ss_dssp EETTTSCHHHHHHHHHSCTTCBCCCBTTTTCEEEEEEEE
T ss_pred ecHHhcCHHHHHHHHcCCCCCcCCcEEeCCeEEEEEEec
Confidence 999999999999999999999999999999999999974
No 20
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=50.33 E-value=19 Score=22.38 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 36 TTRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 36 ~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
-+++..+++|.++...+.++ +|+++...+++
T Consensus 11 fde~~v~~~A~~~I~~l~~~--dy~~i~~~~~~ 41 (114)
T 4hyz_A 11 FDKETVRKQAMEDIEIAQSK--DYESWKSRFTK 41 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CHHHHHTTBCH
T ss_pred hhHHHHHHHHHHHHHHHHhC--CHHHHHHHhCH
Confidence 45567788999999999986 89999754443
No 21
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.75 E-value=28 Score=15.87 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHHHHHhC
Q 033441 37 TRESAVSQLQAIRDDIVSG 55 (119)
Q Consensus 37 ~~~~a~~~a~~l~~~l~~g 55 (119)
+.++.+++...+++.+++|
T Consensus 9 eledlqerlrklrkklrsg 27 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3455566666677666653
No 22
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.74 E-value=82 Score=19.83 Aligned_cols=30 Identities=3% Similarity=0.148 Sum_probs=19.0
Q ss_pred cccHHHHHHHHHHHHHHHHhChhhHHHHHHHhC
Q 033441 35 NTTRESAVSQLQAIRDDIVSGKAKFDEVASRLS 67 (119)
Q Consensus 35 ~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S 67 (119)
....++|+++++.|...+.. +|...-++.+
T Consensus 83 ~e~i~~A~~~Ie~Ll~~v~~---~~~~~~~q~~ 112 (119)
T 2yqr_A 83 PEGLAAAKKLCENLLQTVHA---EYSRFVNQIN 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhchHH---HHHHHHHhhC
Confidence 45567777888888777764 4555544433
No 23
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=30.47 E-value=50 Score=21.08 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCccceeEcCCe----EEEEEE
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSG----VHLIMR 117 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G----~hIv~v 117 (119)
+.+..++.+.++|+.- -+.++.| |.|+.|
T Consensus 92 SPlG~ALlGk~~GD~v-~v~~p~G~~~~~~I~~I 124 (136)
T 3bmb_A 92 APVGAALLGLRVGDSI-HWELPGGVATHLEVLEL 124 (136)
T ss_dssp SHHHHHHTTCBTTCEE-EEEETTTEEEEEEEEEE
T ss_pred CHHHHHHcCCCCCCEE-EEEcCCCCEEEEEEEEE
Confidence 5799999999999986 4778888 555554
No 24
>1u14_A Hypothetical UPF0244 protein YJJX; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 1.68A {Salmonella typhimurium} SCOP: c.51.4.3 PDB: 1u5w_A
Probab=30.14 E-value=40 Score=22.82 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=33.6
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+.+.|++| ....++..++.. .+.+.++|-+|.++.+.+.
T Consensus 109 ~~v~~~i~~G-~ELG~vmd~~~~~~~i~~~~GaIG~lT~g~~~ 150 (172)
T 1u14_A 109 AVILDRVRQG-EALGPVMSQYTGIDEIGRKEGAIGVFTAGKLT 150 (172)
T ss_dssp HHHHHHHTTT-CCHHHHHHHHHCCTTGGGTTHHHHHHTTTSSC
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCccCccCchHhhhcCCcee
Confidence 4566677788 689999888876 7888999999999988775
No 25
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.85 E-value=71 Score=19.70 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCC
Q 033441 35 NTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSD 68 (119)
Q Consensus 35 ~~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~ 68 (119)
..+=+++.++++.|.++|.+|.-+.++..+.|-.
T Consensus 29 ~~sFEeal~eLEeIV~~LE~gel~LEesl~lyee 62 (100)
T 1vp7_A 29 PQDFETALAELESLVSAMENGTLPLEQSLSAYRR 62 (100)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566889999999999999987788887777754
No 26
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=27.51 E-value=45 Score=20.47 Aligned_cols=34 Identities=3% Similarity=0.019 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccc
Q 033441 36 TTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSS 71 (119)
Q Consensus 36 ~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~ 71 (119)
..+++.++..+...+.+.+| |++.++.-|+++..
T Consensus 5 ~~~~~I~~l~~~~~~A~~~~--D~~~~~~l~a~D~v 38 (142)
T 3f7s_A 5 AAESEIRQLIERWMQAVRDR--DIPGIIAPYADDIV 38 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHTTEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHcC--CHHHHHhhcCCCEE
Confidence 45566777778888888876 99999999987643
No 27
>1zwy_A Hypothetical UPF0244 protein VC0702; hypothetical protein, structural genomics, PSI, protein STRU initiative; 1.90A {Vibrio cholerae} SCOP: c.51.4.3 PDB: 1zno_A
Probab=25.71 E-value=45 Score=22.85 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHhChhhHHHHHHHhCC-ccccccCCccccccCCCCc
Q 033441 46 QAIRDDIVSGKAKFDEVASRLSD-CSSAKRGGDLGNFGRGQMQ 87 (119)
Q Consensus 46 ~~l~~~l~~g~~~F~~la~~~S~-~~~~~~gG~~g~~~~~~l~ 87 (119)
..+.+.|++| ....++..++.. .+.+.++|-+|.++.+.+.
T Consensus 119 ~~v~~~i~~G-~ELG~vmd~~~g~~ni~~~~GaIG~lT~g~~t 160 (185)
T 1zwy_A 119 PLVLERLRQA-KELGDVMDEVFGTENIKQKGGAIGLLTRHHLT 160 (185)
T ss_dssp HHHHHHHTTC--CHHHHHHHHHC-------CHHHHHHTTTSSC
T ss_pred HHHHHHHHcC-CCHHHHHHHHhCCCcccccCchhhhhcCCcee
Confidence 4566677788 689999988876 7888899999999988775
No 28
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=24.99 E-value=37 Score=15.47 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=9.5
Q ss_pred CCcHHHHHHHhcC
Q 033441 85 QMQKPFEEATYNL 97 (119)
Q Consensus 85 ~l~~~~~~av~~l 97 (119)
+|||+|+..+..+
T Consensus 2 elppefaaqlrki 14 (27)
T 2rod_B 2 ELPPEFAAQLRKI 14 (27)
T ss_dssp CCCTHHHHHHHHH
T ss_pred CCChHHHHHHHHh
Confidence 5889998877543
No 29
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=24.65 E-value=53 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCCCccceeEcCCe----EEEEEE
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSG----VHLIMR 117 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G----~hIv~v 117 (119)
+.+..++.+.++|+.- -+.++.| |.|+.|
T Consensus 95 SPlG~ALlGk~vGD~v-~v~~P~G~~~~~~I~~I 127 (141)
T 2pn0_A 95 APVGSALLGLAQGDEI-EWPKPGGGVLRVRIVEV 127 (141)
T ss_dssp STTHHHHTTCBTTCEE-EEECTTSSEEEEEEEEE
T ss_pred CHHHHHHcCCCCCCEE-EEEcCCCCEEEEEEEEE
Confidence 5799999999999986 4788877 556555
No 30
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.32 E-value=56 Score=19.32 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHHHHHhC
Q 033441 35 NTTRESAVSQLQAIRDDIVSG 55 (119)
Q Consensus 35 ~~~~~~a~~~a~~l~~~l~~g 55 (119)
.-+.++|+++|++++..|..|
T Consensus 58 ~~sL~~AR~~a~~~r~~l~~G 78 (88)
T 3jtz_A 58 AISLSDARQQREGIRKMLALN 78 (88)
T ss_dssp TSCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHHcC
Confidence 357899999999999999988
No 31
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=23.91 E-value=65 Score=19.21 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccc
Q 033441 36 TTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSS 71 (119)
Q Consensus 36 ~~~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~ 71 (119)
.+.+++++.++...+.++++ |.+.++.-|+++..
T Consensus 5 m~~~~~~~~~~~~~~a~n~~--D~~~l~~l~a~D~v 38 (122)
T 3h3h_A 5 ITQAFAQQFSREWIDAWNAH--DLDAILSHYADGFE 38 (122)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcc--CHHHHHHhcCCCEE
Confidence 45567778888889899875 89999999987543
No 32
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=23.16 E-value=76 Score=19.37 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHhCCccc
Q 033441 38 RESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSS 71 (119)
Q Consensus 38 ~~~a~~~a~~l~~~l~~g~~~F~~la~~~S~~~~ 71 (119)
.++..+..+.+.+.++.| |++.+..-|.++..
T Consensus 12 ~~~I~~l~~~~~~A~~~~--D~~~~~~l~a~d~~ 43 (143)
T 2ux0_A 12 KQEIIKITEQLIEAINNG--DFEAYTKICDPGLT 43 (143)
T ss_dssp HHHHHHHHHHHHHHHHHT--CHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHhcCCCcE
Confidence 455666677788888876 99999999987533
No 33
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.37 E-value=1.4e+02 Score=18.02 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHHHHHHhChhhH----HHHHHHhCC
Q 033441 35 NTTRESAVSQLQAIRDDIVSGKAKF----DEVASRLSD 68 (119)
Q Consensus 35 ~~~~~~a~~~a~~l~~~l~~g~~~F----~~la~~~S~ 68 (119)
+....-|+..-..|++.|+.| .+- +-++.+|++
T Consensus 36 dSnA~iA~dlR~~Vre~l~~G-~Sd~eI~~~mv~RYGd 72 (90)
T 2kw0_A 36 DSNSMIATDLRQKVYELMQEG-KSKKEIVDYMVARYGN 72 (90)
T ss_dssp SCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCC
Confidence 344477788889999999998 343 445566665
No 34
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=22.04 E-value=23 Score=23.32 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=11.1
Q ss_pred hhHHHHHHHhCCccc
Q 033441 57 AKFDEVASRLSDCSS 71 (119)
Q Consensus 57 ~~F~~la~~~S~~~~ 71 (119)
-+-+++.+.++...-
T Consensus 26 ls~~evi~~h~~~~y 40 (141)
T 2zp2_A 26 LSPEEVIDIHTNGEY 40 (141)
T ss_dssp CCHHHHHHHHTTCCE
T ss_pred cCHHHHHHHHhCCCe
Confidence 578888888887433
No 35
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=21.27 E-value=1e+02 Score=20.02 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCCccceeEcCCeEEEEE
Q 033441 88 KPFEEATYNLKIGEISEVVDTDSGVHLIM 116 (119)
Q Consensus 88 ~~~~~av~~l~~G~is~pi~s~~G~hIv~ 116 (119)
+++..++.+.++|+.- -+.+|.|-.-++
T Consensus 123 SPlG~ALlGk~~GD~v-~~~~p~G~~~~~ 150 (156)
T 2f23_A 123 SPMGKALLGHRVGDVL-SLDTPKGKREFR 150 (156)
T ss_dssp SHHHHHHTTCCTTCEE-EEEETTEEEEEE
T ss_pred CHHHHHHcCCCCCCEE-EEEcCCCcEEEE
Confidence 5799999999999986 478888744333
Done!